Citrus Sinensis ID: 009515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
Protein Sequence
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccEEEcccccccccccEEEccccccccccccEEEEccccccccccEEEccccccEEEEEEEEEccccccccccccEEEEEccEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHcccccEEEEEcccccccEEEEEEEEEEcccccccccEEEEEEEcccccccccccccccccEEEEEEEEEEcccccEEEEccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEEccccHcccccccccccccccccccccEEEccccccccccEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccccccEEEccccccccEEccccccccccccccccEcccccccccccccccccHHHHHHHcccccccEEEEccccccccEEEEEEEEEEHHccccccEEEEEEEEcccEccccccccccccEEEEEcccccccccEEEEEEEccccccccEEEHHEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccEEEEEEcccccccccccHHHHHHHHccEEEccccccccccccHccccccEEEEcccccccccccHHHHHcccccEEEEccccccccccHHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
msllspssfFFLSLLLVLPlslassypykasyridcgsatsttdpfnttwqaddryytsgatsivseplhfrfphektlryfppssgkkncyiipnlppgryyirtftvydnydgkshspsfdvsvegtlvfswrspwpeglardgaySDLFAFvkdgeldlcfysfatdppviaslevqqidplsydaatignnhILVNygrltsgsnqwgpgfsndaddfgrswqsdaasrspnakssiksvttreritntnqppnyypmklYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVndknvtrvdIFNSVGSFAAYSWHYVAKNlssteltvKLVPVVGAALISglenyalvpndlstVPEQVIAMRALKEslrvpdrmgwngdpcaptnwdawegitchpnkdeTAVVISQIDlgsqglkgyiSDKISLLSNLVNLnlstnslggtlpsglgqqslvrldlsdnqftgsipdsltssSKLQLVLLNNnllegrvpeelysigvhggafeyvktpnc
Flexible Loop (DISEMBL)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGsatsttdpfnttwQADDRYYTSGATSIVSEPLHFRFPHEKTlryfppssgkkncYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWqsdaasrspnakssiksvttreritntnqppnyypMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKEslrvpdrmgwNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIgvhggafeyvktpnc
Low Complexity Region (SEG)
MsllspssffflslllvlplslassYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKIsllsnlvnlnlstnslggtlPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKlqlvllnnnllEGRVPEELYSIGVHGGAFEYVKTPNC
Disordered region (IsUnstruct)
*******SFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQW**********************************************NYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL********LVRL*******************KLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYV*****
Disordered Region (DISOPRED)
******S**FFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP**
Disordered Region (DISEMBL)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRS********************TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC
Disordered Region (DISPRO)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	533	2.2.26 [Sep-21-2011]
Q9FZB1	872	Probable LRR receptor-lik	no	no	0.801	0.489	0.286	1e-32
Q9ZQQ7	886	Putative leucine-rich rep	no	no	0.878	0.528	0.255	1e-30
O81069	884	Probable leucine-rich rep	no	no	0.812	0.489	0.266	1e-29
Q9LIG2	899	Receptor-like protein kin	no	no	0.861	0.510	0.272	2e-29
C0LGT5	866	Probable LRR receptor-lik	no	no	0.731	0.450	0.271	2e-28
Q9FZB8	871	Probable LRR receptor-lik	no	no	0.849	0.520	0.261	3e-28
Q9FN94	868	Receptor-like protein kin	no	no	0.816	0.501	0.274	3e-28
C0LGD8	864	Probable LRR receptor-lik	no	no	0.823	0.508	0.279	5e-28
Q9SNA3	889	Putative receptor-like pr	no	no	0.814	0.488	0.266	1e-27
C0LGD6	852	Probable LRR receptor-lik	no	no	0.782	0.489	0.286	7e-26

>sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 144/502 (28%), Positives = 230/502 (45%), Gaps = 75/502 (14%)

Query: 34  IDCG----SATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
           +DCG    +AT T    N T+++D  Y  SG    +S     +   +  T+R FP   G+
Sbjct: 32  LDCGLVPKNATYTEKTTNITYKSDANYIDSGLVGRISAEYKAQLQQQTWTVRSFP--EGE 89

Query: 89  KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAY 148
           +NCY        RY IR    Y NYDG    P FD+ +  +    W S   +G+  +GA 
Sbjct: 90  RNCYNFNLTAKSRYLIRATFTYGNYDGLRQVPKFDIHIGPS---KWTSVKLDGVG-NGAV 145

Query: 149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGS 208
            ++   +    L +C        P I+SLE++ ++  +Y    +  +  L+ + R+   +
Sbjct: 146 LEMIHVLTQDRLQICLVKTGKGIPFISSLELRPLNNNTY----LTQSGSLIGFARVFFSA 201

Query: 209 NQWGPGFSN-DADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
               P F   D D   R W            + +KS++T   +  +N  P   P  + +T
Sbjct: 202 T---PTFIRYDEDIHDRVWVRQFG-------NGLKSISTDLLVDTSN--PYDVPQAVAKT 249

Query: 268 AIVSSGAIQYNLAVDAKLDYL-----IWFHFAEI----DSSVTK------AGQRVFDILV 312
           A V S A Q  L  D  LD +     ++ HFAEI    D+ + +       GQ V+  L 
Sbjct: 250 ACVPSNASQ-PLIFDWTLDNITSQSYVYMHFAEIQTLKDNDIREFNITYNGGQNVYSYLR 308

Query: 313 NDKNVTRVDIFNSV------GSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366
            +K      +F+S       GSF+          LS T+     +P     LI+GLE Y 
Sbjct: 309 PEKFEIST-LFDSKPLSSPDGSFS----------LSFTKTGNSTLP----PLINGLEIYK 353

Query: 367 LVP-NDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC-HPNKDETAV 424
           ++   +L T  ++V AM  +K +  +  ++ W GDPCAP ++  WEG+ C +PN D+  +
Sbjct: 354 VLDLLELETDQDEVSAMINIKATYDLSKKVSWQGDPCAPKSYQ-WEGLNCSYPNSDQPRI 412

Query: 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRL-DLSDN-Q 482
           +   ++L    L G I+ +IS L+ L+ L+LS N L G +P       L++L +LS N  
Sbjct: 413 I--SLNLAENKLTGTITPEISKLTQLIELDLSKNDLSGEIPEFFADMKLLKLINLSGNLG 470

Query: 483 FTGSIPDSLTS---SSKLQLVL 501
              +IPDS+     S  L L+L
Sbjct: 471 LNSTIPDSIQQRLDSKSLILIL 492

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZQQ7|Y2144_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 234/541 (43%), Gaps = 73/541 (13%)

Query: 7   SSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTT---DPF-NTTWQADDRYYTSGAT 62
           S    L+      +SL  S   +    + CG  ++ +   +P  N T+ +D  +   G T
Sbjct: 5   SKLMLLACATFSIISLVKSQNQQGFISLYCGLPSNESPYIEPLTNLTYISDVNFVRGGKT 64

Query: 63  SIVSEPLHFRFPHE--KTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSP 120
             +       F     K LRYFP   G +NCY +      +Y IRT   Y NYDG + SP
Sbjct: 65  GNIKNNSDIDFTSRPYKVLRYFP--EGIRNCYSLSVKQGTKYLIRTLFFYGNYDGLNTSP 122

Query: 121 SFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEV 179
            FD+ +   +   W S   + +   DG   ++    +   LD+C     T  P+I+++E+
Sbjct: 123 RFDLFLGPNI---WTSVDVQKVDGGDGVIEEIIHVTRCNILDICLVKTGTTTPMISAIEL 179

Query: 180 QQIDPLSYDA--ATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNA 237
           +   PL YD   A  G+   ++++    SG     P      D + R W        P++
Sbjct: 180 R---PLRYDTYTARTGSLKKILHFYFTNSGKEVRYP-----EDVYDRVW-------IPHS 224

Query: 238 KSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGA---IQYNLAVDAKLDYL-IWFHF 293
           +     + T   ++  +   N  P  + +TA + +     + +    ++  D    + +F
Sbjct: 225 QPEWTQINTTRNVSGFSDGYNP-PQDVIKTASIPTNVSEPLTFTWMSESSDDETYAYLYF 283

Query: 294 AEIDSSVTKAGQ-RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVP 352
           AEI     KA + R F ILVN                  Y   Y+ +   +  L      
Sbjct: 284 AEIQQ--LKANETRQFKILVN----------------GVYYIDYIPRKFEAETLITPAAL 325

Query: 353 VVGAAL----------------ISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRM 395
             G  +                ++ +E ++++    S T  ++VIA++ ++ + +V  R+
Sbjct: 326 KCGGGVCRVQLSKTPKSTLPPQMNAIEIFSVIQFPQSDTNTDEVIAIKNIQSTYKV-SRI 384

Query: 396 GWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNL 455
            W GDPC P  + +W G++C+     T   I  +DL S GL G I+  I  L+ L  L+L
Sbjct: 385 SWQGDPCVPIQF-SWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPSIQNLTMLRELDL 443

Query: 456 STNSLGGTLPSGLGQQSLVR-LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           S N+L G +P  L   +++R LDLS+N  TG +P+ L +   L ++ L  N L G VP+ 
Sbjct: 444 SNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQA 503

Query: 515 L 515
           L
Sbjct: 504 L 504

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 225/491 (45%), Gaps = 58/491 (11%)

Query: 34  IDCGSATSTT---DPFN-TTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
           +DCG  +  +   D FN  T+ +D  +  +G    V + L+     +  TLRYFP   GK
Sbjct: 28  LDCGLPSDESPYDDSFNGLTFTSDSTFIQTGKIDSVDKDLNINLSKQYLTLRYFP--EGK 85

Query: 89  KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAY 148
           +NCY +       Y I    VY NYDG +  P+FD+ +       W+    +G  ++G  
Sbjct: 86  RNCYSLDVKRGTTYLIVVSFVYGNYDGLNRDPNFDIHLGPN---KWKRIDLDG-EKEGTR 141

Query: 149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGS 208
            ++    +   LD+C        P+I+++E++   PL  +     +  +++++ R+   +
Sbjct: 142 EEIIHKARSNSLDICLVKTGETLPIISAIEIR---PLRNNTYVTQSGSLMMSF-RVYLSN 197

Query: 209 NQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTA 268
           +     +++D  D  R W       SP   SS   +TT   I N+N      P  + QTA
Sbjct: 198 SDASIRYADDVHD--RIW-------SPFNGSSHTHITTDLNINNSNAYE--IPKNILQTA 246

Query: 269 IVSSGA-----IQYN-LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDI 322
            +   A     I ++ L ++A++   ++ HFAEI  ++     R FD+++          
Sbjct: 247 AIPRNASAPLIITWDPLPINAEV--YLYMHFAEI-QTLEANETRQFDVILRGN------- 296

Query: 323 FNSVG-------SFAAYSWHYVAKNLSSTELTVKLVPVVGAAL---ISGLENYALVP-ND 371
           FN  G        F  Y+         S    ++LV    + L   I+ +E Y+++  + 
Sbjct: 297 FNHSGFSPTKLKVFTLYTEE--PMKCGSEGCYLQLVKTPNSTLPPLINAIEAYSVIEFSQ 354

Query: 372 LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDL 431
           L T    V A++ +K + ++ +++ W GDPC P +  +WE I C      T+  I  +DL
Sbjct: 355 LETSLSDVDAIKNIKNTYKL-NKITWQGDPCLPQDL-SWESIRCTYVDGSTSPTIISLDL 412

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-QQSLVRLDLSDNQFTGSIPDS 490
              GL G I   +   + L  L+LS NSL G +P  L   ++L  ++LS N  +GS+P +
Sbjct: 413 SKSGLNGSIPQILQNFTQLQELDLSNNSLTGPVPIFLANMKTLSLINLSGNNLSGSVPQA 472

Query: 491 LTSSSKLQLVL 501
           L    K  LVL
Sbjct: 473 LLDKEKEGLVL 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 220/500 (44%), Gaps = 41/500 (8%)

Query: 20  LSLASSYPYKASYRIDCGSATSTTDPFN-----TTWQADDRYYTSGATSIVSEPLH--FR 72
           L L  +   K    +DCGS  +   P+N      T+  DD +  SG T  + +     F 
Sbjct: 22  LHLVEAQDQKGFISLDCGSLPNE-PPYNDPSTGLTYSTDDGFVQSGKTGRIQKAFESIFS 80

Query: 73  FPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVF 132
            P  K LRYFP   G +NCY +       Y I+   VY NYDG ++ PSFD+ +   L  
Sbjct: 81  KPSLK-LRYFP--DGFRNCYTLNVTQDTNYLIKAVFVYGNYDGLNNPPSFDLYLGPNL-- 135

Query: 133 SWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATI 192
            W +    G   +G   ++        L +C     T  P+I +LE++ +   +Y+  + 
Sbjct: 136 -WVTVDMNGRT-NGTIQEIIHKTISKSLQVCLVKTGTSSPMINTLELRPLKNNTYNTQS- 192

Query: 193 GNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQS--DAASRSPNAKSSIKSVTTRERI 250
           G+      Y    SG N   P   ND     R W    DA   +         +TT   I
Sbjct: 193 GSLKYFFRYYFSGSGQNIRYPDDVND-----RKWYPFFDAKEWT--------ELTTNLNI 239

Query: 251 TNTN--QPPNYYPMKLYQTAIVSSGAIQYN-LAVDAKLDYLIWFHFAEIDSSVTKAGQRV 307
            ++N   PP    M    T I + G   ++ L   +   + ++ HFAEI + +     R 
Sbjct: 240 NSSNGYAPPEVV-MASASTPISTFGTWNFSWLLPSSTTQFYVYMHFAEIQT-LRSLDTRE 297

Query: 308 FDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366
           F + +N K    R            YS     ++ +      K        L++ LE + 
Sbjct: 298 FKVTLNGKLAYERYSPKTLATETIFYSTPQQCEDGTCLLELTKTPKSTLPPLMNALEVFT 357

Query: 367 LVP-NDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVV 425
           ++    + T P+ V A+++++ +  +  ++ W GDPC P  +  WEG+ C+   + T  +
Sbjct: 358 VIDFPQMETNPDDVAAIKSIQSTYGL-SKISWQGDPCVPKQF-LWEGLNCNNLDNSTPPI 415

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++ ++L S  L G I+  I  L++L  L+LS N+L G +P  L   +SL+ ++LS N F 
Sbjct: 416 VTSLNLSSSHLTGIIAQGIQNLTHLQELDLSNNNLTGGIPEFLADIKSLLVINLSGNNFN 475

Query: 485 GSIPDSLTSSSKLQLVLLNN 504
           GSIP  L     L+L+L  N
Sbjct: 476 GSIPQILLQKKGLKLILEGN 495

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT5|Y5169_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 193/445 (43%), Gaps = 55/445 (12%)

Query: 79  LRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPW 138
           LRYFP   G +NCY +  L   RY I+   VY NYDG +  PSFD+ +       W    
Sbjct: 77  LRYFP--DGLRNCYTLDVLQNRRYMIKAVFVYGNYDGYNDYPSFDLYLGPN---KWVRVD 131

Query: 139 PEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHIL 198
            EG   +G+  ++        L +C        P I++LE++ +   +Y    +   H+ 
Sbjct: 132 LEGKV-NGSVEEIIHIPSSNSLQICLVKTGNSLPFISALELRLLRNDTYVVQDVSLKHLF 190

Query: 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPN 258
             Y R +    ++        D + R W       SP        +TT   + N+N   N
Sbjct: 191 RRYYRQSDRLIRY------PDDVYDRVW-------SPFFLPEWTQITTSLDVNNSN---N 234

Query: 259 YYPMKLYQTAIVSSGAIQYNLAVDAKLD-----YLIWFHFAEI-------DSSVTKAGQR 306
           Y P K   T+  + G     L +   LD       ++ HFAE+       D ++     R
Sbjct: 235 YEPPKAALTSAATPGDNGTRLTIIWTLDNPDEQIHLYVHFAELEPVGENTDEALRTLFTR 294

Query: 307 VFDILVN-----DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLV-----PVVGA 356
            F  +VN     D+++T +D+       A  +   V         +++LV     P V  
Sbjct: 295 TFYFVVNGKISYDESITPLDL-------AVSTVETVVNKCDGGNCSLQLVRSEASPGVRV 347

Query: 357 ALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415
            L++ +E +  +    S T P+ VI+++ ++ +  +  R+ W GDPC P  +  W G+ C
Sbjct: 348 PLVNAMEAFTAIKFPHSETNPDDVISIKVIQATYEL-SRVDWQGDPCLPQQF-LWTGLNC 405

Query: 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-QQSLV 474
                 T+  I  +DL S  L G I   I  L+ L  L+LS N L G +P  L   +SL+
Sbjct: 406 SYMNMSTSPRIISLDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLL 465

Query: 475 RLDLSDNQFTGSIPDSLTSSSKLQL 499
            ++LS+N   GSIP +L     L+L
Sbjct: 466 FINLSNNNLVGSIPQALLDRKNLKL 490

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZB8|Y5181_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 238/523 (45%), Gaps = 70/523 (13%)

Query: 9   FFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNT-----TWQADDRYYTSGATS 63
            FF+   L+L L  A   P      +DCG +   + P+       T+ +DD +  SG   
Sbjct: 6   LFFVIFSLILHLVQAQD-PI-GFINLDCGLSIQGS-PYKESSTGLTYTSDDGFVQSGKIG 62

Query: 64  IVSEPLHFRFPH-EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSF 122
            +++ L   +   E+TLRYFP   G +NC+ +      +Y I+   +Y NYDG++  P F
Sbjct: 63  KITKELESLYKKPERTLRYFP--DGVRNCFSLNVTRGTKYLIKPTFLYGNYDGRNVIPDF 120

Query: 123 DVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQI 182
           D+ +   +   W +     +  D    ++    K   L +C     T  P I +LE++  
Sbjct: 121 DLYIGPNM---WIT-----VNTDNTIKEILHVSKSNTLQVCLVKTGTSIPYINTLELR-- 170

Query: 183 DPLSYDAATIGNNHILVNYGRLTSGSNQWG-PGFSNDADDFGRSWQSDAASRSPNAKSSI 241
            PL+ D  T  N    +NY      SN  G   + +D  D  R W+     +        
Sbjct: 171 -PLADDIYT--NESGSLNYLFRVYYSNLKGYIEYPDDVHD--RIWKQILPYQD------W 219

Query: 242 KSVTTRERITNTNQPPNY-YPMKLYQTAIVSSGAIQYNLAVDAKLD-----YLIWFHFAE 295
           + +TT  +I  +N   +Y  P ++ +TA+    A    +     L+     + ++ HFAE
Sbjct: 220 QILTTNLQINVSN---DYDLPQRVMKTAVTPIKASTTTMEFPWNLEPPTSQFYLFLHFAE 276

Query: 296 IDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVA---------KNLSSTEL 346
           + S +     R F++++N  NVT          F +YS  ++          K     + 
Sbjct: 277 LQS-LQANETREFNVVLNG-NVT----------FKSYSPKFLEMQTVYSTAPKQCDGGKC 324

Query: 347 TVKLVPVVGAAL---ISGLENYALVP-NDLSTVPEQVIAMRALKESLRVPDRMGWNGDPC 402
            ++LV    + L   I+ +E Y ++    + T  ++VIA++ ++ +  +  +  W GDPC
Sbjct: 325 LLQLVKTSRSTLPPLINAMEAYTVLDFPQIETNVDEVIAIKNIQSTYGL-SKTTWQGDPC 383

Query: 403 APTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG 462
            P  +  W+G+ C+ + D T  +I+ ++L S GL G I   I  L+NL  L+LS N+L G
Sbjct: 384 VPKKF-LWDGLNCNNSDDSTPPIITSLNLSSSGLTGIIVLTIQNLANLQELDLSNNNLSG 442

Query: 463 TLPSGLG-QQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            +P  L   +SL+ ++LS N  +G +P  L     L+L +  N
Sbjct: 443 GVPEFLADMKSLLVINLSGNNLSGVVPQKLIEKKMLKLNIEGN 485

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN94|RLK7_ARATH Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 212/496 (42%), Gaps = 61/496 (12%)

Query: 34  IDCGSATSTTDPFNTT-----WQADDRYYTSGATSIVSEPLHFRF--PHEKTLRYFPPSS 86
           +DCG   + T P+  T     + +D  +  SG T  V      +F  P+ +TLRYFP   
Sbjct: 31  LDCGLPANETSPYTETQTGLLFSSDATFIQSGKTGRVQANQESKFLKPY-RTLRYFP--E 87

Query: 87  GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD- 145
           G +NCY +      +Y I    +Y NYDG + +P FD+ +   L       W +   +D 
Sbjct: 88  GVRNCYNLSVFKERKYLIAASFLYGNYDGHNIAPVFDLYLGPNL-------WAKIDLQDV 140

Query: 146 -GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRL 204
            G   ++        L +C        P+I+SLE++ +   SY   +      L  Y RL
Sbjct: 141 NGTGEEILHIPTSNSLQICLVQTGETTPLISSLELRPMRTGSYTTVSGS----LKTYRRL 196

Query: 205 TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTN--QPPNYYPM 262
               +  G       D + RSW        P        ++T   + NTN  QPP    +
Sbjct: 197 YFKKS--GSRLRYSKDVYDRSW-------FPRFMDEWTQISTALGVINTNIYQPPED-AL 246

Query: 263 KLYQTAIVSSGAIQYNLAVDAKLD--YLIWFHFAEIDSSVTKAGQRVFDILVNDKNVT-- 318
           K   T   +S  + +    + KLD  Y  + H+AEI   +     R F+IL+N +N++  
Sbjct: 247 KNAATPTDASAPLTFKWNSE-KLDVQYYFYAHYAEIQD-LQANDTREFNILLNGQNLSVT 304

Query: 319 --------RVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPN 370
                    +  F S    +   W   A N          +P     L++ LE Y ++  
Sbjct: 305 GPEVPDKLSIKTFQSSSPISCNGW---ACNFQLIRTKRSTLP----PLLNALEVYTVIQF 357

Query: 371 DLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQI 429
             S   E  V+AM+ +  S  +  R+ W GDPC P     W+ + C          I+ +
Sbjct: 358 PRSETDESDVVAMKNISASYGL-SRINWQGDPCFPQQL-RWDALDCTNRNISQPPRITSL 415

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +L S  L G I+  I  ++ L  L+LS N+L G +P  LG+ +SL  ++LS N   GSIP
Sbjct: 416 NLSSSRLNGTIAAAIQSITQLETLDLSYNNLTGEVPEFLGKMKSLSVINLSGNNLNGSIP 475

Query: 489 DSLTSSSKLQLVLLNN 504
            +L    +L+L L  N
Sbjct: 476 QAL-RKKRLKLYLEGN 490

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD8|Y1755_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1

 Score =  126 bits (316), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 144/516 (27%), Positives = 227/516 (43%), Gaps = 77/516 (14%)

Query: 20  LSLASSYPYKASYRIDCGSATSTTDPFNT-----TWQADDRYYTSGATSIVSEPLHFRFP 74
           L L  S   +    +DCG A S   P+N      T+ +D  +   G T  V + L  +  
Sbjct: 18  LHLVQSQNQQGFISLDCGLA-SNESPYNEANSNLTYISDADFIQGGKTGNVQKDLLMKLR 76

Query: 75  HEKT-LRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFS 133
              T LRYFP   G +NCY +       Y IR    Y NYDG ++SP FD+ +   +   
Sbjct: 77  KPYTVLRYFP--DGIRNCYSLNVKQDTNYLIRVMFRYGNYDGLNNSPRFDLYLGPNI--- 131

Query: 134 WRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIG 193
           W +    G + DG   ++    +   LD+C     T  P+I+S+E++   PL YD   I 
Sbjct: 132 W-TTIDMGKSGDGVLEEIIHITRSNILDICLVKTGTSTPMISSIELR---PLLYDTY-IA 186

Query: 194 NNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASR--SPNAKSSIKSVTTRERIT 251
               L NY R           +  D++++ R +  D   R   P        + T   + 
Sbjct: 187 QTGSLRNYNRF----------YFTDSNNYIR-YPQDVHDRIWVPLILPEWTHINTSHHVI 235

Query: 252 NT--NQPPNYYPMKLYQTAIVSSGA-----IQYNL--AVDAKLDYLIWFHFAEIDSSVTK 302
           ++     P   P  + +T  + + A     I +NL  A D    Y+      E+ ++ T 
Sbjct: 236 DSIDGYDP---PQDVLRTGAMPANASDPMTITWNLKTATDQVYGYIYIAEIMEVQANET- 291

Query: 303 AGQRVFDILVNDK------NVTRVD---IFNSV-----GSFAAYSWHYVAKNLSSTELTV 348
              R F+++VN+K        TR +   +FN+V     G F       + K   ST    
Sbjct: 292 ---REFEVVVNNKVHFDPFRPTRFEAQVMFNNVPLTCEGGFCRLQ---LIKTPKST---- 341

Query: 349 KLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNW 407
            L P++ A  + +G+E     P    T    VIA++ ++ S  + +R+ W GDPC P  +
Sbjct: 342 -LPPLMNAFEIFTGIE----FPQS-ETNQNDVIAVKNIQASYGL-NRISWQGDPCVPKQF 394

Query: 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG 467
             W G++C+     T   I ++DL S GL G I   I  L+ L  L+LS N+L G +P  
Sbjct: 395 -LWTGLSCNVIDVSTPPRIVKLDLSSSGLNGVIPPSIQNLTQLQELDLSQNNLTGKVPEF 453

Query: 468 LGQQS-LVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           L +   L+ ++LS N+ +G +P +L    K  L LL
Sbjct: 454 LAKMKYLLVINLSGNKLSGLVPQALLDRKKEGLKLL 489

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SNA3|Y3463_ARATH Putative receptor-like protein kinase At3g46340 OS=Arabidopsis thaliana GN=At3g46340 PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 209/491 (42%), Gaps = 57/491 (11%)

Query: 34  IDCGSATSTTDPF-----NTTWQADDRYYTSGATSIVSEPLHFR-FPHEKTLRYFPPSSG 87
           +DCG   +   P+        + +D  +  SG    V +           TLRYFP   G
Sbjct: 35  LDCGLPPNEVSPYIEPFTGLRFSSDSSFIQSGKIGKVDKSFEATTLKSYMTLRYFP--DG 92

Query: 88  KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
           K+NCY +       Y IR   +Y NYDG + SP FD+ +       W +    G    G 
Sbjct: 93  KRNCYNLIVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANF---W-TTLDAGEYLSGV 148

Query: 148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSG 207
             ++    +   LD+C     T  P ++ LE++   PL  D+   G+   L  + R    
Sbjct: 149 VEEVNYIPRSNSLDVCLVKTDTSTPFLSLLELR---PLDNDSYLTGSGS-LKTFRRYYLS 204

Query: 208 SNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
           +++    +  D  D  R W+       P   S  K + T  +  N+N      P  +  T
Sbjct: 205 NSESVIAYPEDVKD--RIWE-------PTFDSEWKQIWTTLKPNNSNG--YLVPKNVLMT 253

Query: 268 AIV---SSGAIQYNLAVDAKLDYL-IWFHFAEIDSSVTKAGQRVFDILVNDK-------- 315
           A +    S   ++   +D+  D L ++ HF+E+  S+     R FDIL + +        
Sbjct: 254 AAIPANDSAPFRFTEELDSPTDELYVYLHFSEV-QSLQANESREFDILWSGEVAYEAFIP 312

Query: 316 ---NVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVP-ND 371
              N+T +     V          + +  +ST             LI+ +E Y +V    
Sbjct: 313 EYLNITTIQTNTPVTCPGGKCNLELKRTKNSTH----------PPLINAIEFYTVVNFPQ 362

Query: 372 LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDL 431
           L T    V+A++ +K +  + +R+ W GDPC P  +  WEG+ C+     T   I+ ++L
Sbjct: 363 LETNETDVVAIKDIKATYEL-NRITWQGDPCVPQKF-IWEGLDCNSKDALTLPRITSLNL 420

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-QQSLVRLDLSDNQFTGSIPDS 490
            S GL G I+  I  L++L  L+LS N+L G +P  L   +SL  ++LS N   GSIP +
Sbjct: 421 SSTGLTGNIAAGIQNLTHLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQA 480

Query: 491 LTSSSKLQLVL 501
           L    K  L L
Sbjct: 481 LLKREKDGLKL 491

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 221/493 (44%), Gaps = 76/493 (15%)

Query: 34  IDCGSATSTTDPFNTT---WQADDRYYTSGATSIVSEPLHFRFPHE-KTLRYFPPSSGKK 89
           IDCG  + ++   +TT   + +D  +  +G    VS+ + F    + + LR FP   G +
Sbjct: 34  IDCGIPSGSSYKDDTTGINYVSDSSFVETG----VSKSIPFTAQRQLQNLRSFP--EGSR 87

Query: 90  NCY-IIPNLPPGR-YYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
           NCY +IP    G+ Y IR   +Y NYDG++ SP FD+ + G +       W   L  +G+
Sbjct: 88  NCYTLIPIQGKGKKYLIRASFMYGNYDGENGSPEFDLFLGGNI-------WDTVLLSNGS 140

Query: 148 --YSDLFAFVKDGE-LDLCFYSFATDPPVIASLEVQQI--DPLSYDAATIGNNHILVNYG 202
              S    ++   E + +C  +     P I++LE++ +  D  +YD+     N  L  + 
Sbjct: 141 SIVSKEVVYLSQSENIFVCLGNKGKGTPFISTLELRFLGNDNTTYDSP----NGALF-FS 195

Query: 203 RLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYP- 261
           R     +  G     D D + R W        P      + + T   +T+ N   N Y  
Sbjct: 196 RRWDLRSLMGSPVRYDDDVYDRIW-------IPRNFGYCREINTSLPVTSDN---NSYSL 245

Query: 262 ----MKLYQTAIVSSGAIQYNLA-VDAKLDYLIWFHFAEIDSSVTKAGQ-RVFDILVNDK 315
               M    T I ++  I   L   D  + Y ++ HFAE++    K  Q R FDI +N  
Sbjct: 246 SSLVMSTAMTPINTTRPITMTLENSDPNVRYFVYMHFAEVEDLSLKPNQTREFDISINGV 305

Query: 316 NVTRVDIFNSVGSFAAYSWHYVAKNL------SSTELTVKLVPVVGAAL---ISGLENYA 366
            V            A +S  Y+  N       S +++   LV    + L   ++ LE Y 
Sbjct: 306 TVA-----------AGFSPKYLQTNTFFLNPESQSKIAFSLVRTPKSTLPPIVNALEIY- 353

Query: 367 LVPNDLS---TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETA 423
            V N  S   T  E   A+ +LK S +V  +  W+GDPC P ++  WEG+ C  +   T 
Sbjct: 354 -VANSFSQSLTNQEDGDAVTSLKTSYKV--KKNWHGDPCLPNDY-IWEGLNCSYDS-LTP 408

Query: 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVR-LDLSDNQ 482
             I+ ++L S GL G+IS   S L+ +  L+LS N L G +P  L +   +R L+L +N 
Sbjct: 409 PRITSLNLSSSGLTGHISSSFSNLTMIQELDLSNNGLTGDIPEFLSKLKFLRVLNLENNT 468

Query: 483 FTGSIPDSLTSSS 495
            TGS+P  L   S
Sbjct: 469 LTGSVPSELLERS 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
255566849	674	serine-threonine protein kinase, plant-t	0.932	0.737	0.754	0.0
449445156	626	PREDICTED: putative leucine-rich repeat	0.954	0.813	0.709	0.0
449526481	591	PREDICTED: receptor-like protein kinase	0.954	0.861	0.709	0.0
225423893	630	PREDICTED: Di-glucose binding protein wi	0.973	0.823	0.694	0.0
356499717	636	PREDICTED: putative leucine-rich repeat	0.923	0.773	0.686	0.0
356498336	642	PREDICTED: putative leucine-rich repeat	0.932	0.774	0.669	0.0
357488299	632	Receptor-like protein kinase [Medicago t	0.962	0.811	0.656	0.0
42562316	628	Di-glucose binding protein with Leucine-	0.924	0.785	0.688	0.0
356574639	626	PREDICTED: probable LRR receptor-like se	0.964	0.821	0.615	0.0
12320747	585	hypothetical protein [Arabidopsis thalia	0.881	0.803	0.654	0.0

>gi|255566849|ref|XP_002524408.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223536369|gb|EEF38019.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/502 (75%), Positives = 438/502 (87%), Gaps = 5/502 (0%)

Query: 27  PYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSS 86
           PY  SY IDCG  T+TTDPFNTTW +D R++T G+TS+VSEPLHFRFP EK LRYFP SS
Sbjct: 19  PYDISYYIDCGGPTNTTDPFNTTWLSD-RFFTGGSTSVVSEPLHFRFPQEKNLRYFPLSS 77

Query: 87  GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
           GKKNCYI+P LP GRYYIRTFTVYDNYDGK HSPSFDVSVEGTLVFSWRSPW E LARDG
Sbjct: 78  GKKNCYILP-LPNGRYYIRTFTVYDNYDGKLHSPSFDVSVEGTLVFSWRSPWSENLARDG 136

Query: 147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
           AYSDLF F+ DGE D+CFYS ATDPPVI SLE++Q+DP SYD+ T+GNN ILVNYGRL+ 
Sbjct: 137 AYSDLFTFIDDGEADICFYSIATDPPVIGSLEIRQVDPASYDSITVGNNSILVNYGRLSC 196

Query: 207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSI--KSVTTRERITNTNQPPNYYPMKL 264
           GS QWGPGFSND D+FGRSWQSD   R+P    ++  +S++TRE+I+ T+QPPNY+PMKL
Sbjct: 197 GSVQWGPGFSNDTDNFGRSWQSDLEFRTPTTTKTMAFRSLSTREKISGTDQPPNYFPMKL 256

Query: 265 YQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN 324
           YQTA+  +GA++Y L VDAKLDYL+WFHFAEIDS+VTK GQRVFD++VNDKN +RVDIF 
Sbjct: 257 YQTAVTGNGALEYELTVDAKLDYLLWFHFAEIDSTVTKKGQRVFDVVVNDKNASRVDIFA 316

Query: 325 SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRA 384
           +VGSFAAYS+ Y  +NLS+  LTVK+VP +GA LISG+ENYALVPND+ST P+QV AMRA
Sbjct: 317 AVGSFAAYSFSYAVRNLSNGALTVKIVPHIGAPLISGIENYALVPNDISTAPDQVAAMRA 376

Query: 385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
           LKESLRVPDRMGWNGDPCAPTNWDAWEG+TCHPNK+ TA+VISQIDLGSQGLKGYI+D+I
Sbjct: 377 LKESLRVPDRMGWNGDPCAPTNWDAWEGVTCHPNKNGTALVISQIDLGSQGLKGYINDQI 436

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           S LSNLV+LNLS+NSLGG LP GLG +SL+RLDLS+NQF+G IP+SL SSS LQLVLL+N
Sbjct: 437 SQLSNLVSLNLSSNSLGGMLPPGLGHKSLMRLDLSNNQFSGPIPESLASSS-LQLVLLHN 495

Query: 505 NLLEGRVPEELYSIGVHGGAFE 526
           NLLEGRV EELYSIG+HGG  +
Sbjct: 496 NLLEGRVQEELYSIGLHGGTID 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445156|ref|XP_004140339.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Cucumis sativus]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/513 (70%), Positives = 421/513 (82%), Gaps = 4/513 (0%)

Query: 16  LVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPH 75
           ++ P S+++ YP+  SY IDCG   ++TDPF TTW +D R+YT G T+IVSEPL FR P 
Sbjct: 12  VITPSSISAPYPFSISYHIDCGGLINSTDPFGTTWLSD-RFYTGGTTAIVSEPLIFRHPQ 70

Query: 76  EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWR 135
           EK LR+FP SSGKKNCYIIPNLP GRYY RTFTVYDNYDGKSH PSFD S+EGTLVFSWR
Sbjct: 71  EKNLRFFPLSSGKKNCYIIPNLPTGRYYFRTFTVYDNYDGKSHPPSFDASIEGTLVFSWR 130

Query: 136 SPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNN 195
           SPW E LAR GAYSDLFAF+ DGE D CFYS +TD PVI S ++ Q+DP+SY++  IG N
Sbjct: 131 SPWSEDLARHGAYSDLFAFIGDGEADFCFYSLSTDSPVIGSFQLVQVDPMSYNSTAIGEN 190

Query: 196 HILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQ 255
            ILVNYGRLT GS QWGPGFSND D FGRSWQSD+    P+ K S++ ++T + ++  +Q
Sbjct: 191 FILVNYGRLTCGSEQWGPGFSNDTDVFGRSWQSDSIFIIPSLKQSVRVLSTAKSVSGADQ 250

Query: 256 PPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN 313
            PNY+PMKLYQ A+    +G ++Y L VDAKLDYL+W HFAEIDSSV KAGQRVFD+++N
Sbjct: 251 QPNYFPMKLYQKAVTVGGTGVLEYELPVDAKLDYLVWLHFAEIDSSVKKAGQRVFDVVIN 310

Query: 314 DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
             N TR+DIF  VGSFAAYSW Y  KNLSS+ L+VKLV VVG+ L+SGLENYALVP DLS
Sbjct: 311 GNNATRIDIFAKVGSFAAYSWSYTMKNLSSSALSVKLVGVVGSPLLSGLENYALVPRDLS 370

Query: 374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
           T PEQV AMRALKESLRVP RMGWNGDPCAPTNWDAWEGITC PNK+ TA+VI QIDLGS
Sbjct: 371 TAPEQVSAMRALKESLRVPGRMGWNGDPCAPTNWDAWEGITCRPNKNATALVIFQIDLGS 430

Query: 434 QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTS 493
           QGLKGYISD+I LL+NLV+LNLS+NSLGGT+P GLG+ SL RLDLS NQ TGSIPDSL +
Sbjct: 431 QGLKGYISDQIVLLTNLVSLNLSSNSLGGTIPPGLGEHSLTRLDLSKNQLTGSIPDSL-A 489

Query: 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           S  LQLV+LN+NLLEGRVPEELYSIGVHGGA +
Sbjct: 490 SRNLQLVILNDNLLEGRVPEELYSIGVHGGAID 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526481|ref|XP_004170242.1| PREDICTED: receptor-like protein kinase At3g21340-like, partial [Cucumis sativus]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/513 (70%), Positives = 421/513 (82%), Gaps = 4/513 (0%)

Query: 16  LVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPH 75
           ++ P S+++ YP+  SY IDCG   ++TDPF TTW +D R+YT G T+IVSEPL FR P 
Sbjct: 12  VITPSSISAPYPFSISYHIDCGGLINSTDPFGTTWLSD-RFYTGGTTAIVSEPLIFRHPQ 70

Query: 76  EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWR 135
           EK LR+FP SSGKKNCYIIPNLP GRYY RTFTVYDNYDGKSH PSFD S+EGTLVFSWR
Sbjct: 71  EKNLRFFPLSSGKKNCYIIPNLPTGRYYFRTFTVYDNYDGKSHPPSFDASIEGTLVFSWR 130

Query: 136 SPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNN 195
           SPW E LAR GAYSDLFAF+ DGE D CFYS +TD PVI S ++ Q+DP+SY++  IG N
Sbjct: 131 SPWSEDLARHGAYSDLFAFIGDGEADFCFYSLSTDSPVIGSFQLVQVDPMSYNSTAIGEN 190

Query: 196 HILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQ 255
            ILVNYGRLT GS QWGPGFSND D FGRSWQSD+    P+ K S++ ++T + ++  +Q
Sbjct: 191 FILVNYGRLTCGSEQWGPGFSNDTDVFGRSWQSDSIFIIPSLKQSVRVLSTAKSVSGADQ 250

Query: 256 PPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN 313
            PNY+PMKLYQ A+    +G ++Y L VDAKLDYL+W HFAEIDSSV KAGQRVFD+++N
Sbjct: 251 QPNYFPMKLYQKAVTVGGTGVLEYELPVDAKLDYLVWLHFAEIDSSVKKAGQRVFDVVIN 310

Query: 314 DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
             N TR+DIF  VGSFAAYSW Y  KNLSS+ L+VKLV VVG+ L+SGLENYALVP DLS
Sbjct: 311 GNNATRIDIFAKVGSFAAYSWSYTMKNLSSSALSVKLVGVVGSPLLSGLENYALVPRDLS 370

Query: 374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
           T PEQV AMRALKESLRVP RMGWNGDPCAPTNWDAWEGITC PNK+ TA+VI QIDLGS
Sbjct: 371 TAPEQVSAMRALKESLRVPGRMGWNGDPCAPTNWDAWEGITCRPNKNATALVIFQIDLGS 430

Query: 434 QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTS 493
           QGLKGYISD+I LL+NLV+LNLS+NSLGGT+P GLG+ SL RLDLS NQ TGSIPDSL +
Sbjct: 431 QGLKGYISDQIVLLTNLVSLNLSSNSLGGTIPPGLGEHSLTRLDLSKNQLTGSIPDSL-A 489

Query: 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           S  LQLV+LN+NLLEGRVPEELYSIGVHGGA +
Sbjct: 490 SRNLQLVILNDNLLEGRVPEELYSIGVHGGAID 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423893|ref|XP_002281668.1| PREDICTED: Di-glucose binding protein with Leucine-rich repeat domain-like [Vitis vinifera] gi|297737862|emb|CBI27063.3| unnamed protein product [Vitis vinifera]

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/527 (69%), Positives = 442/527 (83%), Gaps = 8/527 (1%)

Query: 3   LLSPSSFFFLSLLLVLPLSLAS-SYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGA 61
           +L+ + FFF+  +L  PLS +   YP+  SY IDCG +T++ D FN TW +D R YT G+
Sbjct: 1   MLAFAVFFFILPILFSPLSSSEVQYPFNVSYNIDCGGSTNSVDQFNRTWLSD-RNYTGGS 59

Query: 62  TSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPS 121
           T +VSEPLHF    EKT+R+FP SSGKKNCYI+ NLP GRYY+RTFTVYDNYDGKSHSPS
Sbjct: 60  TGLVSEPLHFHPLQEKTIRFFPLSSGKKNCYIV-NLPNGRYYVRTFTVYDNYDGKSHSPS 118

Query: 122 FDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQ 181
           FD+SVEGTLVFSWRSPWPE +++ GAYSDLF +V DGE D+CFYS ATDPPVI SLE+ Q
Sbjct: 119 FDLSVEGTLVFSWRSPWPEEVSQHGAYSDLFVYVNDGEADVCFYSIATDPPVIGSLEIIQ 178

Query: 182 IDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSI 241
           ID  SYD+ATIG + ILVNYGRLT GS+QWGPGFSND D FGRSWQSD   R+ N  S+I
Sbjct: 179 IDAYSYDSATIGTDQILVNYGRLTCGSDQWGPGFSNDTDFFGRSWQSDEEFRAKN--SNI 236

Query: 242 KSVTTRERITNTNQPPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSS 299
           K + T + I NTN+ PNY+PM+LYQ+A+    +GA++Y L VDAKLDYL+WFHFAEID+S
Sbjct: 237 KRLLTSKSIANTNKLPNYFPMRLYQSAVTVTGNGALEYELQVDAKLDYLLWFHFAEIDAS 296

Query: 300 VTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALI 359
           V  AG+RVF++++N  NVTR+D++  VG FAA +WHYV KNLS+T LTVKLVPVVGA ++
Sbjct: 297 VNAAGKRVFEVVINGNNVTRIDVYQRVGGFAADNWHYVVKNLSNTLLTVKLVPVVGAPIL 356

Query: 360 SGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNK 419
           SGLENYAL+P DLSTVP+QVIAMRALKESLR+P RMGWNGDPCAPTNWDAWEG+TCHPNK
Sbjct: 357 SGLENYALIPADLSTVPDQVIAMRALKESLRIPARMGWNGDPCAPTNWDAWEGVTCHPNK 416

Query: 420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLS 479
            ETA+V+SQIDLGSQGLKG+ISD+I  LSNLV+LNLS+N L GTLPSGLGQ+SL RLDLS
Sbjct: 417 KETALVVSQIDLGSQGLKGFISDQIGHLSNLVSLNLSSNFLEGTLPSGLGQESLARLDLS 476

Query: 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           +NQ TGSIP+SL +SS LQLVLLN+NLLEG+VP++++S+GVHGG+ +
Sbjct: 477 NNQLTGSIPESL-ASSNLQLVLLNDNLLEGKVPDKIFSVGVHGGSID 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499717|ref|XP_003518683.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/501 (68%), Positives = 415/501 (82%), Gaps = 9/501 (1%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKN 90
           SY IDCGS T++TD FNTTW +D RY++ GAT IVSEPL FR  HEKTLR+FP SSGKKN
Sbjct: 37  SYHIDCGSPTNSTDQFNTTWLSD-RYFSGGATGIVSEPLRFRHGHEKTLRFFPISSGKKN 95

Query: 91  CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSD 150
           CY IPNLPP RY +RTF VYDNYDG+SH PSFDV++  T+VFSWRSPWP+ LARDGAY+D
Sbjct: 96  CYTIPNLPPSRYLLRTFVVYDNYDGRSHPPSFDVAIAATVVFSWRSPWPQSLARDGAYAD 155

Query: 151 LFAFV-KDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIG-NNHILVNYGRLTSGS 208
           LFA +    E  +CFYSFATDPPV++S+E+   DP SYDAA IG N+ +LVNYGRL+ GS
Sbjct: 156 LFATITASSEALICFYSFATDPPVVSSIELFAADPASYDAAAIGKNDSVLVNYGRLSCGS 215

Query: 209 NQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTA 268
            QWGPGFSND+D FGRSWQSD+  R+   +S +++++TR RI+ T Q PNY+P KLYQTA
Sbjct: 216 KQWGPGFSNDSDRFGRSWQSDSDFRT--GRSKVRAMSTRSRISGTEQKPNYFPEKLYQTA 273

Query: 269 IVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNS 325
             +    G ++Y L+VDAKLDYL+W HFAEI+  V + G+RVFD+ +ND N+TRVDI+  
Sbjct: 274 ATAEEGGGVLEYELSVDAKLDYLVWLHFAEIEERVRRVGERVFDVYINDDNLTRVDIYKQ 333

Query: 326 VGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL 385
           VG FAA++WH+  KNLSS+ L+VKLV VVGA LI G+ENYALVP+D STVPEQV+AM+AL
Sbjct: 334 VGGFAAFTWHHTVKNLSSSVLSVKLVGVVGAPLICGIENYALVPSDPSTVPEQVVAMKAL 393

Query: 386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKIS 445
           K+SLRVP+RMGWNGDPCAPTNWDAWEG+TC  +K+ TA+VISQIDLGSQGLKG ISD+IS
Sbjct: 394 KDSLRVPERMGWNGDPCAPTNWDAWEGVTCRTSKNNTALVISQIDLGSQGLKGSISDQIS 453

Query: 446 LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           LLS+LV+LNLS+N L G +PSGLGQ+SL+ LDLS+NQ TG IPDS+ SSS LQLVLLN N
Sbjct: 454 LLSDLVSLNLSSNLLVGEIPSGLGQKSLIHLDLSNNQLTGPIPDSMASSS-LQLVLLNGN 512

Query: 506 LLEGRVPEELYSIGVHGGAFE 526
           LLEGRVPE+LYSIGVHGGA +
Sbjct: 513 LLEGRVPEQLYSIGVHGGAID 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498336|ref|XP_003518009.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/509 (66%), Positives = 416/509 (81%), Gaps = 12/509 (2%)

Query: 26  YPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPS 85
           +P   SY IDCGS T++TD FNTTW +D RY++ GAT IVSEPL FR  HEKTLR+FP S
Sbjct: 35  FPSGLSYHIDCGSPTNSTDQFNTTWLSD-RYFSGGATGIVSEPLRFRHGHEKTLRFFPIS 93

Query: 86  SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD 145
           SGKKNCY +PNLPP RY +RTF VYDNYDG+SH PSFDV+V  T+VFSWRSPWP+ LAR+
Sbjct: 94  SGKKNCYTVPNLPPSRYLLRTFVVYDNYDGRSHPPSFDVAVAATVVFSWRSPWPQSLARN 153

Query: 146 GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHI-LVNYGRL 204
           GAY+DLFA +   E  +CFYSFATDPPV++S+E+   DP SYDAA IG N I LVNYGRL
Sbjct: 154 GAYADLFATIASSEALICFYSFATDPPVVSSIELFAADPASYDAAAIGKNDIVLVNYGRL 213

Query: 205 TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKL 264
           + GSNQWGPGFSND+D FGRSWQSD+  R+   +S +++V+TR  I+ T Q PNY+P KL
Sbjct: 214 SCGSNQWGPGFSNDSDRFGRSWQSDSDFRT--GRSKVRAVSTRSGISGTEQKPNYFPEKL 271

Query: 265 YQTAIVSS-------GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317
           YQ+A +++       G ++Y L+VDAKLDYL+W HFAEI+  V + G+RVFD+ +N+ N+
Sbjct: 272 YQSAAMTAVTAEEGDGVLEYELSVDAKLDYLVWLHFAEIEGRVRRVGERVFDVYINNDNL 331

Query: 318 TRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE 377
           TR+DI+  VG FAA++WH+  KNLSS+ L+VKLV VVGA LI G+ENYALVP+D STVPE
Sbjct: 332 TRIDIYKQVGGFAAFTWHHTVKNLSSSVLSVKLVGVVGAPLICGIENYALVPSDPSTVPE 391

Query: 378 QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLK 437
           QV+AM+ALK+S RVP+RMGWNGDPCAPTNWDAWEG+TC  +K+ T +VISQIDLGSQGLK
Sbjct: 392 QVVAMKALKDSFRVPERMGWNGDPCAPTNWDAWEGVTCRTSKNSTTLVISQIDLGSQGLK 451

Query: 438 GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           G ISD+ISLLS+LV+LNLS+N L G +PSGLGQ+SL+ LDLS+NQ TG IPDS+ SSS L
Sbjct: 452 GSISDQISLLSDLVSLNLSSNLLVGEIPSGLGQKSLIHLDLSNNQLTGPIPDSIASSS-L 510

Query: 498 QLVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           QLVLLN NLLEGRVPE+LYSIGVHGGA +
Sbjct: 511 QLVLLNGNLLEGRVPEQLYSIGVHGGAID 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488299|ref|XP_003614437.1| Receptor-like protein kinase [Medicago truncatula] gi|355515772|gb|AES97395.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/527 (65%), Positives = 421/527 (79%), Gaps = 14/527 (2%)

Query: 12  LSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHF 71
           L L   +  +++++ PY  SY IDCG+ T+TTD FNTTW +D R++T G T  VSEPL F
Sbjct: 5   LILFFSILTTVSTALPYGISYHIDCGTPTNTTDSFNTTWLSD-RFFTGGTTGFVSEPLQF 63

Query: 72  RFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV 131
              HEKTLR+FP SSGKKNCY IP+    RY IRTF VYDNYDGKSH PSFDVSV GT+V
Sbjct: 64  HHHHEKTLRFFPISSGKKNCYSIPSSTTSRYLIRTFVVYDNYDGKSHPPSFDVSVSGTVV 123

Query: 132 FSWRSPWPEGLARDGAYSDLFAFVKDGE-LDLCFYSFATDPPVIASLEVQQIDPLSYDAA 190
           FSWRSPWP+ LARDGAYSDLFA  K+ E + +CFYSFATDPPV++S+E+  +DP SYD+A
Sbjct: 124 FSWRSPWPQNLARDGAYSDLFASFKEQEDVLICFYSFATDPPVVSSIELFGVDPASYDSA 183

Query: 191 TIGNNH-ILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASR---SPNAKSSIKSVTT 246
           +IGNN  ILVNYGR++ GSNQWGPGF+ND D FGRSWQSD+  R   S + ++ + +V+T
Sbjct: 184 SIGNNDTILVNYGRVSCGSNQWGPGFTNDDDRFGRSWQSDSDYRISGSGSRRNKVVAVST 243

Query: 247 RERITNTNQPPNYYPMKLYQTAIVSSG-------AIQYNLAVDAKLDYLIWFHFAEIDSS 299
           R  I  TNQ PNY+P KLY+TA  ++         +++ L VDAKLDYL+W HFAEI+  
Sbjct: 244 RRNIAGTNQKPNYFPAKLYETAATTAETAEEGGGVLEFELNVDAKLDYLVWLHFAEIEDR 303

Query: 300 VTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALI 359
           V KAG+RVFD+ +N  N+TRVDI+  VG  AA++WH+  KNLSS+ L VKLV VVGA +I
Sbjct: 304 VRKAGERVFDVFINGDNLTRVDIYKQVGGLAAFTWHHTVKNLSSSSLIVKLVGVVGAPII 363

Query: 360 SGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNK 419
            G+ENYALVP D STVP+QVIAM+ALK+SLRVP+RMGWNGDPCAPTNWDAWEG+TC  +K
Sbjct: 364 CGIENYALVPGDPSTVPQQVIAMKALKDSLRVPERMGWNGDPCAPTNWDAWEGVTCRMSK 423

Query: 420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLS 479
           D TA+VISQIDLGSQGLKG+ISD+ISLLS+LV+LNLS+N L G +P GLGQ+SL+ LDLS
Sbjct: 424 DNTALVISQIDLGSQGLKGFISDQISLLSDLVSLNLSSNLLVGEVPPGLGQKSLIHLDLS 483

Query: 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           +NQ TGSIPDS+TSSS LQLVLLN NLLEG+VP+ELYSIGVHGGA +
Sbjct: 484 NNQLTGSIPDSITSSS-LQLVLLNGNLLEGQVPDELYSIGVHGGAID 529

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562316|ref|NP_564237.2| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana] gi|332192522|gb|AEE30643.1| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/498 (68%), Positives = 415/498 (83%), Gaps = 5/498 (1%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKN 90
           S+ IDCGS  ++TD FN TW  D ++Y+ G+T++VSEPL F    EKT+RYFP S GKKN
Sbjct: 29  SFFIDCGSPETSTDVFNRTWLPD-QFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSFGKKN 87

Query: 91  CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSD 150
           CY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG+YSD
Sbjct: 88  CYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDGSYSD 146

Query: 151 LFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQ 210
           LFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ GS+Q
Sbjct: 147 LFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSCGSDQ 206

Query: 211 WGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIV 270
           WGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQTA+ 
Sbjct: 207 WGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQTAVT 266

Query: 271 SSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGS 328
            SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+ VG 
Sbjct: 267 VSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFHEVGG 326

Query: 329 FAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKES 388
           FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+ALK+S
Sbjct: 327 FAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKALKDS 386

Query: 389 LRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLS 448
           LRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++ISLL+
Sbjct: 387 LRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQISLLT 446

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
           NL +LNLS+N+L G LP GLG +SLV LDLS+NQ TG IP+SLT SS L+LVLLN N L+
Sbjct: 447 NLNSLNLSSNTLSGQLPLGLGHKSLVSLDLSNNQLTGPIPESLTLSS-LKLVLLNGNELQ 505

Query: 509 GRVPEELYSIGVHGGAFE 526
           G+VPEE+YS+GVHGG  +
Sbjct: 506 GKVPEEVYSVGVHGGIID 523

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574639|ref|XP_003555453.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g16900-like [Glycine max]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/525 (61%), Positives = 411/525 (78%), Gaps = 11/525 (2%)

Query: 8   SFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSE 67
           ++ FL  L+ + ++ ++      SY I+CG++T +TD FNTTW +D R++++G++++VSE
Sbjct: 4   AYSFLVSLVFITMTPSTPQVEAFSYHINCGASTDSTDSFNTTWLSD-RFFSAGSSALVSE 62

Query: 68  PLHFRFPHEKTLRYFPPSS-GKKNCYIIPNLP-PGRYYIRTFTVYDNYDGKSHSPSFDVS 125
           PLHF  P EKTLR+FPPSS GK+NCY  P+LP P RY +RTFTVYDNYD KS  PSFDVS
Sbjct: 63  PLHFPLPSEKTLRFFPPSSSGKRNCYTFPSLPSPSRYLLRTFTVYDNYDAKSRPPSFDVS 122

Query: 126 VEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATDPPVIASLEVQQIDP 184
           +  T++FSWRSPWPE  AR+GAYSDLFA + +   LDLCFY FATD P+++S+E+ Q+ P
Sbjct: 123 LSSTVLFSWRSPWPESTARNGAYSDLFASLPNTSSLDLCFYGFATDSPLVSSIELVQVHP 182

Query: 185 LSYDAATIGNNHILVNYGRLTSGS--NQWGPGFSNDADDFGRSWQSDAASRS-PNAKSSI 241
            +Y   T  NN ILVNYGR++ G+    WG GF+N  D F RSWQ D   R+ P  +  +
Sbjct: 183 AAY---TNSNNLILVNYGRISCGAAAKPWGAGFTNHTDRFSRSWQPDYDFRTIPEDRDEV 239

Query: 242 KSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVT 301
           +S++T   I+  ++ PNY+PMKLYQ+A+ + G + Y L+VDAKLDY +W HFAEIDSSV 
Sbjct: 240 RSLSTDNSISGADEAPNYFPMKLYQSAVTTEGPLGYELSVDAKLDYTVWLHFAEIDSSVN 299

Query: 302 KAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISG 361
           KAG+RVFDI +ND NVTR+DI+N VG+FAA + ++  KNLS   LT+KLVP VGA LI  
Sbjct: 300 KAGERVFDIFINDDNVTRLDIYNHVGAFAALTLNFTVKNLSDNVLTLKLVPAVGAPLICA 359

Query: 362 LENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDE 421
           +ENYALVP D ST+P QV AM+ALKESLRVPDRMGWNGDPCAPTNWDAWEG+TC    D+
Sbjct: 360 IENYALVPVDPSTLPLQVSAMKALKESLRVPDRMGWNGDPCAPTNWDAWEGVTCRMTNDK 419

Query: 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDN 481
           TA VISQIDLGSQGLKG+ISD+ISLLS+LV+LNLS+NSLGG +P GLGQ+SL+++DLS+N
Sbjct: 420 TAHVISQIDLGSQGLKGFISDQISLLSDLVSLNLSSNSLGGEIPPGLGQKSLIQVDLSNN 479

Query: 482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           Q  G IPDSL +SS L+LVLLN NLLEGRVPE+LYS+GVHGGA +
Sbjct: 480 QLMGFIPDSL-ASSNLKLVLLNGNLLEGRVPEQLYSVGVHGGAID 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12320747|gb|AAG50525.1|AC084221_7 hypothetical protein [Arabidopsis thaliana]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/498 (65%), Positives = 395/498 (79%), Gaps = 28/498 (5%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKN 90
           S+ IDCGS  ++TD FN TW  D ++Y+ G+T++VSEPL F    EKT+RYFP S GKKN
Sbjct: 29  SFFIDCGSPETSTDVFNRTWLPD-QFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSFGKKN 87

Query: 91  CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSD 150
           CY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG+YSD
Sbjct: 88  CYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDGSYSD 146

Query: 151 LFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQ 210
           LFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ GS+Q
Sbjct: 147 LFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSCGSDQ 206

Query: 211 WGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIV 270
           WGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQTA+ 
Sbjct: 207 WGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQTAVT 266

Query: 271 SSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGS 328
            SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+ VG 
Sbjct: 267 VSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFHEVGG 326

Query: 329 FAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKES 388
           FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+ALK+S
Sbjct: 327 FAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKALKDS 386

Query: 389 LRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLS 448
           LRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++ISLL+
Sbjct: 387 LRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQISLLT 446

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
           NL +LNLS+N+L G LP GLG +SLV L                        LLN N L+
Sbjct: 447 NLNSLNLSSNTLSGQLPLGLGHKSLVSL------------------------LLNGNELQ 482

Query: 509 GRVPEELYSIGVHGGAFE 526
           G+VPEE+YS+GVHGG  +
Sbjct: 483 GKVPEEVYSVGVHGGIID 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
TAIR|locus:2031175	628	AT1G25570 [Arabidopsis thalian	0.932	0.791	0.643	3e-179
TAIR|locus:2032221	626	RLP4 "receptor like protein 4"	0.917	0.781	0.332	5.2e-65
TAIR|locus:2094103	519	AT3G19230 [Arabidopsis thalian	0.866	0.890	0.274	1.9e-35
TAIR|locus:2195855	876	AT1G51910 [Arabidopsis thalian	0.806	0.490	0.268	6.9e-26
TAIR|locus:2055160	886	AT2G14440 [Arabidopsis thalian	0.844	0.507	0.251	3.7e-25
TAIR|locus:2078171	883	AT3G46400 [Arabidopsis thalian	0.823	0.497	0.253	6.3e-25
TAIR|locus:2028446	888	AT1G49100 [Arabidopsis thalian	0.825	0.495	0.257	6.4e-25
TAIR|locus:2078186	889	AT3G46340 [Arabidopsis thalian	0.829	0.497	0.243	1.1e-24
TAIR|locus:2024987	864	AT1G07550 [Arabidopsis thalian	0.810	0.5	0.260	4e-24
TAIR|locus:2126540	876	AT4G29990 [Arabidopsis thalian	0.810	0.493	0.264	4.1e-24

TAIR|locus:2031175 AT1G25570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
 Identities = 323/502 (64%), Positives = 391/502 (77%)

Query:    27 PYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSS 86
             P+  S+ IDCGS  ++TD FN TW   D++Y+ G+T++VSEPL F    EKT+RYFP S 
Sbjct:    25 PFNTSFFIDCGSPETSTDVFNRTW-LPDQFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSF 83

Query:    87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
             GKKNCY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG
Sbjct:    84 GKKNCYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDG 142

Query:   147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
             +YSDLFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ 
Sbjct:   143 SYSDLFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSC 202

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
             GS+QWGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQ
Sbjct:   203 GSDQWGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQ 262

Query:   267 TAIVSSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN 324
             TA+  SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+
Sbjct:   263 TAVTVSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFH 322

Query:   325 SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRA 384
              VG FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+A
Sbjct:   323 EVGGFAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKA 382

Query:   385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
             LK+SLRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++I
Sbjct:   383 LKDSLRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQI 442

Query:   445 XXXXXXXXXXXXXXXXXXXXPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKXXXXXXXX 504
                                 P GLG +SLV LDLS+NQ TG IP+SLT SS         
Sbjct:   443 SLLTNLNSLNLSSNTLSGQLPLGLGHKSLVSLDLSNNQLTGPIPESLTLSS-LKLVLLNG 501

Query:   505 XXXEGRVPEELYSIGVHGGAFE 526
                +G+VPEE+YS+GVHGG  +
Sbjct:   502 NELQGKVPEEVYSVGVHGGIID 523

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2032221 RLP4 "receptor like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 170/512 (33%), Positives = 252/512 (49%)

Query:    27 PYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPS 85
             PY  + RI CG+  +  T P    W  D  Y T G  +  + P +   P  KTLRYFP S
Sbjct:    26 PY--ALRISCGARKNVRTPPTYALWFKDIAY-TGGVPANATTPTYIT-PPLKTLRYFPIS 81

Query:    86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD 145
              G  NCY I  +P G Y +R F    +       P FD+S+EGT + S +S W      D
Sbjct:    82 EGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDISIEGTQISSLKSGWSS--QDD 139

Query:   146 GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAAT-IGNNHILVNYGRL 204
               +++   F+  G   +CF+S     P I S+E+ Q+D  +Y      G   IL    RL
Sbjct:   140 QVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAYSFGEGWGQGVILRTATRL 199

Query:   205 TSGSNQWGPGFSNDADDFGRSWQSDAA-SRSPN-AKSSIKSVTTRERITNTNQPPNYYPM 262
             T G+ +    F  D D  G  W  D   +R  +  KS+    +T E I   +  PN+YP 
Sbjct:   200 TCGTGK--SRF--DEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEETIKKASVSPNFYPE 255

Query:   263 KLYQTAIVSSGA---IQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DKNVT 318
              LYQ+A+VS+     + Y+L V+   +Y +W HFAEID+++T  G+RVFD+++N D    
Sbjct:   256 GLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGKRVFDVVINGDTFFE 315

Query:   319 RVDIFN-SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVP 376
              VDI   S G +AA   +     +S   LTV L P  G  A+I+ +E + ++  +  T+ 
Sbjct:   316 DVDIIKMSGGRYAALVLNATV-TVSGRTLTVVLQPKAGGHAIINAIEVFEIITAEFKTLR 374

Query:   377 EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGL 436
             ++V A++ +K++L +P R GWNGDPC P     W G  C  +K+ +   I  +DL +QGL
Sbjct:   375 DEVSALQKMKKALGLPSRFGWNGDPCVPPQ-HPWSGANCQLDKNTSRWFIDGLDLDNQGL 433

Query:   437 KGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS 495
             KG++ + I                    P+ LG   SL  LDLS N F GSIP++L   +
Sbjct:   434 KGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSFNGSIPETLGELT 493

Query:   496 KXXXXXXXXXXXEGRVPEELYSIGVHGGAFEY 527
                          G+VP  +    +H  +F +
Sbjct:   494 SLRILNLNGNSLSGKVPAAVGGRLLHRASFNF 525

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2094103 AT3G19230 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 137/500 (27%), Positives = 218/500 (43%)

Query:    27 PYKASYRIDCGSATSTTDPFNTT-WQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPS 85
             P    + ++CGS++ST    N   +  D+ + + G T+ + +      P   TLRYFP  
Sbjct:    18 PPPRGFFLNCGSSSSTN--LNEIEYTPDEGFISVGNTTTIKQK--DLVPILSTLRYFPDK 73

Query:    86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTL--VFSWRSPWPEGLA 143
             S +K+CY  P     +Y IRT   Y N+DGK++ P FD  + GT   V +    + +G  
Sbjct:    74 SSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTKWSVVNTSEDYAKG-- 131

Query:   144 RDGAYSDLFAFVKDGELDLCFYSFA---TDPPVIASLEVQQIDPLSYDAATIGNNHILVN 200
                +Y ++   V    L +C    A   +  P I+SL+VQ ++   Y++  +G+  + + 
Sbjct:   132 -QSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYNSTDLGSYKLSL- 189

Query:   201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYY 260
               R + G +  G   S   D + R WQ       P +     +VT+R RI  +N   N  
Sbjct:   190 IARNSFGGD--GEIISYPDDKYNRLWQ-------PFSDQKHLTVTSRSRINPSNFW-NIP 239

Query:   261 PMKLYQTAIVSSGA----IQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN 316
             P + +     +S      +Q+         Y +  +F + + S      R FD+ VN  +
Sbjct:   240 PAEAFVEGFTASKGKPLELQWPPFPLPATKYYVALYFQD-NRSPGPMSWRAFDVSVNGLS 298

Query:   317 VTRVDIFNSVGSFAAYSWHYVAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTV 375
               R  +  S      YS  +     +   LT  K  PV G  + +G E + ++P   +T 
Sbjct:   299 FLR-KLNVSTNGVMVYSGQWPLSGQTQITLTPAKDAPV-GPFINAG-EVFQILPLGGTTN 355

Query:   376 PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQG 435
              +  IAM  L ES+  P  + W+GDPC P   ++W G+TC  +KD+ A VIS ++L + G
Sbjct:   356 IKDAIAMEDLLESIMKPP-VDWSGDPCLPRA-NSWTGLTC--SKDKIARVIS-LNLTNLG 410

Query:   436 LKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSS 495
             L G +   I                    P       L  L L DNQFTG+IP+SL    
Sbjct:   411 LSGSLPPSINKMTALKDLWLGKNKLTGPIPDLSPMTRLETLHLEDNQFTGAIPESLAKLP 470

Query:   496 KXXXXXXXXXXXEGRVPEEL 515
                         +G +P  L
Sbjct:   471 SLRTLSIKNNKLKGTIPSVL 490

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195855 AT1G51910 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 6.9e-26, P = 6.9e-26
 Identities = 128/477 (26%), Positives = 209/477 (43%)

Query:    34 IDCG----SATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
             +DCG      T T    N T+ +D  Y  SG T  +S+    +   +  TLR FP   G+
Sbjct:    32 LDCGLIPKDTTYTEQITNITYISDADYIDSGLTERISDSYKSQLQQQTWTLRSFP--EGQ 89

Query:    89 KNCYIIPNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
             +NCY   NL    +Y IR   VY NYDG +  P FD+ +       W S   EG+A    
Sbjct:    90 RNCYNF-NLKANLKYLIRGTFVYGNYDGLNQMPKFDLHIGPN---KWTSVILEGVANATI 145

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDA-ATIGNNHILVNYGRLTS 206
             +  +    +D  L +C        P I+SLE++   PL+ D   T G +  L+++ R+  
Sbjct:   146 FEIIHVLTQD-RLQVCLVKTGQTTPFISSLELR---PLNNDTYVTQGGS--LMSFARIYF 199

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
                 +   +S+D  D  R W   + + + +  +++   T+     + N P N     +  
Sbjct:   200 PKTAYFLRYSDDLYD--RVWVPFSQNETVSLSTNLPVDTSSN---SYNVPQNVANSAIIP 254

Query:   267 TAIVSSGAIQYNLA-VDAKLDYLIWFHFAEIDSSVTKAGQ-RVFDILVNDKNVTRVDI-- 322
                     I ++L  ++A   Y ++ HFAEI +   KA   R F+I  N   V    I  
Sbjct:   255 AEATHPLNIWWDLQNINAP-SY-VYMHFAEIQN--LKANDIREFNITYNGGQVWESSIRP 310

Query:   323 ----FNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDL-STVPE 377
                   ++ S  A +      N + T  T   +P     LI+ LE Y LV N L  T  +
Sbjct:   311 HNLSITTISSPTALNSSDGFFNFTFTMTTTSTLP----PLINALEVYTLVENLLLETYQD 366

Query:   378 QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC-HPNKDETAVVISQIDLGSQGL 436
             +V AM  +K++  +  ++ W GDPC+P  +  WEG+ C + + D+   +I+ ++L + GL
Sbjct:   367 EVSAMMNIKKTYGLSKKISWQGDPCSPQIY-RWEGLNCLYLDSDQP--LITSLNLRTSGL 423

Query:   437 KGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQSLVRL-DLSDN-QFTGSIPDSL 491
              G I+  I                    P  L    ++ L +L  N +   ++PDS+
Sbjct:   424 TGIITHDISNLIQLRELDLSDNDLSGEIPDFLADMKMLTLVNLKGNPKLNLTVPDSI 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2055160 AT2G14440 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 126/501 (25%), Positives = 213/501 (42%)

Query:    36 CGSATSTT---DPF-NTTWQADDRYYTSGATSIV--SEPLHFRFPHEKTLRYFPPSSGKK 89
             CG  ++ +   +P  N T+ +D  +   G T  +  +  + F     K LRYFP   G +
Sbjct:    34 CGLPSNESPYIEPLTNLTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFP--EGIR 91

Query:    90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAY 148
             NCY +      +Y IRT   Y NYDG + SP FD+ +   +   W S   + +   DG  
Sbjct:    92 NCYSLSVKQGTKYLIRTLFFYGNYDGLNTSPRFDLFLGPNI---WTSVDVQKVDGGDGVI 148

Query:   149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATI--GNNHILVNYGRLTS 206
              ++    +   LD+C     T  P+I+++E++   PL YD  T   G+   ++++    S
Sbjct:   149 EEIIHVTRCNILDICLVKTGTTTPMISAIELR---PLRYDTYTARTGSLKKILHFYFTNS 205

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
             G     P      D + R W        P+++     + T   ++  +   N  P  + +
Sbjct:   206 GKEVRYP-----EDVYDRVW-------IPHSQPEWTQINTTRNVSGFSDGYNP-PQDVIK 252

Query:   267 TAIVSSGA---IQYNLAVDAKLDYLI-WFHFAEIDSSVTKAGQ-RVFDILVN-----DKN 316
             TA + +     + +    ++  D    + +FAEI     KA + R F ILVN     D  
Sbjct:   253 TASIPTNVSEPLTFTWMSESSDDETYAYLYFAEIQQ--LKANETRQFKILVNGVYYIDYI 310

Query:   317 VTRVDIFNSVGSFAAYSWHYVAK-NLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV 375
               + +    +   A      V +  LS T  +  L P + A  I  +  +    +D +T 
Sbjct:   311 PRKFEAETLITPAALKCGGGVCRVQLSKTPKST-LPPQMNAIEIFSVIQFP--QSDTNT- 366

Query:   376 PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQG 435
              ++VIA++ ++ + +V  R+ W GDPC P  + +W G++C+     T   I  +DL S G
Sbjct:   367 -DEVIAIKNIQSTYKV-SRISWQGDPCVPIQF-SWMGVSCNVIDISTPPRIISLDLSSSG 423

Query:   436 LKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQSLVR-LDLSDNQFTGSIPDSLTSS 494
             L G I+  I                    P  L   +++R LDLS+N  TG +P+ L + 
Sbjct:   424 LTGVITPSIQNLTMLRELDLSNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATI 483

Query:   495 SKXXXXXXXXXXXEGRVPEEL 515
                           G VP+ L
Sbjct:   484 KPLLVIHLRGNNLRGSVPQAL 504

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078171 AT3G46400 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 121/478 (25%), Positives = 206/478 (43%)

Query:    34 IDCGSATSTTDPF---NTTWQ--ADDRYYTSGATSIVSEPLHFRFPHEKT-LRYFPPSSG 87
             +DCG + +   P+    T  Q  +D  +  SG    +   L  ++P  +T LRYFP   G
Sbjct:    31 LDCGLSPNEQSPYVELETGLQFLSDSSFIQSGKIGRIDASLESKYPRSQTTLRYFP--DG 88

Query:    88 KKNCYIIPNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
              +NCY + N+  G  Y IR    Y NYDG + SP FD+ +       W +   E      
Sbjct:    89 IRNCYNV-NVYKGTNYLIRATINYGNYDGLNISPRFDLYIGPNF---WVTIDLEKHVGGD 144

Query:   147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
              + ++    K   LD+C     T  P+I+ LE++ +   +Y   +     IL +Y  +++
Sbjct:   145 TWEEIIHIPKSNSLDVCLIKTGTSTPIISVLELRSLPNNTYITESGSLKSILRSYLSVST 204

Query:   207 GSNQWGPGFSNDADDF-GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLY 265
                ++ P      DDF  R W        P  +S  + ++T  ++ NT          L 
Sbjct:   205 KVIRY-P------DDFYDRKWV-------PYFESEWRQISTILKVNNTINGFLAPQEVLM 250

Query:   266 QTAIVSSGAIQYNLAVDAKL--DYL-IWFHFAEIDSSVTKAGQ-RVFDILVNDKNVTRVD 321
               A+ S+ ++  +   D +   D L  +FHF+EI     +A Q R F IL N + +    
Sbjct:   251 TAAVPSNASVPLSFTKDLEFPKDKLYFYFHFSEIQP--LQANQSREFSILWNGEIIIPTL 308

Query:   322 IFNSVGSFAAYSWHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLS-TVPEQV 379
                 + +   YS       +    L +K         L++ +E + ++    S T  + V
Sbjct:   309 SPKYLKASTLYSVSPFVCEVGKCLLELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDV 368

Query:   380 IAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY 439
              A++ +K++  +  R+ W GDPC P  +  WEG++C+      +  I+ ++L S GL G 
Sbjct:   369 SAIKNIKDTHGL-SRVSWQGDPCVPRQF-LWEGLSCNDKNVSASPRITSLNLSSSGLVGT 426

Query:   440 ISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
             I   I                    P  L + ++L+ +DL  N+  GSIP++L    K
Sbjct:   427 IPSGIQNFTLLEKLDLSNNNLTGLVPEFLAKMETLLFIDLRKNKLNGSIPNTLRDREK 484

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2028446 AT1G49100 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 6.4e-25, P = 6.4e-25
 Identities = 123/477 (25%), Positives = 205/477 (42%)

Query:    34 IDCG---SATSTTDPFN-TTWQADDRYYTSGATSIVSEPLHFRFPHE-KTLRYFPPSSGK 88
             +DCG     +  T+P    T+ +D  +  SG    VS+     F     TLRYFP   G+
Sbjct:    33 LDCGLLPDGSPYTNPSTGLTFTSDSSFIESGKNGRVSKDSERNFEKAFVTLRYFP--DGE 90

Query:    89 KNCYIIPNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
             +NCY + N+  G  Y IR   +Y NYDG +  P+FD+ +    V +       G    G 
Sbjct:    91 RNCYNL-NVTQGTNYLIRAAFLYGNYDGLNTVPNFDLFIGPNKVTTVNFNATGG----GV 145

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSG 207
             + ++    +   LD+C     T  P+I++LE++ +   +Y +A IG++ +L   G L   
Sbjct:   146 FVEIIHMSRSTPLDICLVKTGTTTPMISTLELRPLRSDTYISA-IGSSLLLYFRGYLNDS 204

Query:   208 SNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTN--QPPNYYPMKLY 265
                    + +D +D  R W        P +    K VTT   +  +N    P    M   
Sbjct:   205 GVVLR--YPDDVND--RRW-------FPFSYKEWKIVTTTLNVNTSNGFDLPQG-AMASA 252

Query:   266 QTAIVSSGAIQYNLAV-DAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV--TRVDI 322
              T +  +G  ++  ++ D+   + I+ HFAE+ + +     R F++L+N K         
Sbjct:   253 ATRVNDNGTWEFPWSLEDSTTRFHIYLHFAELQTLLANE-TREFNVLLNGKVYYGPYSPK 311

Query:   323 FNSVGSFAAY-SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVI 380
               S+ + +         K  S     VK        LI+ +E + +V    S T  ++VI
Sbjct:   312 MLSIDTMSPQPDSTLTCKGGSCLLQLVKTTKSTLPPLINAIELFTVVEFPQSETNQDEVI 371

Query:   381 AMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYI 440
             A++ ++ +  +  R+ W GDPC P  +  W G+ C      T   I+ ++L S GL G I
Sbjct:   372 AIKKIQLTYGL-SRINWQGDPCVPEQF-LWAGLKCSNINSSTPPTITFLNLSSSGLTGII 429

Query:   441 SDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
             S  I                    P  L   +SL+ ++LS N F+G +P  L    +
Sbjct:   430 SPSIQNLTHLQELDLSNNDLTGDVPEFLADIKSLLIINLSGNNFSGQLPQKLIDKKR 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078186 AT3G46340 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 115/473 (24%), Positives = 186/473 (39%)

Query:    34 IDCGSATSTTDPF-----NTTWQADDRYYTSGATSIVSEPLHFR-FPHEKTLRYFPPSSG 87
             +DCG   +   P+        + +D  +  SG    V +           TLRYFP   G
Sbjct:    35 LDCGLPPNEVSPYIEPFTGLRFSSDSSFIQSGKIGKVDKSFEATTLKSYMTLRYFP--DG 92

Query:    88 KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
             K+NCY +       Y IR   +Y NYDG + SP FD+ +       W +    G    G 
Sbjct:    93 KRNCYNLIVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANF---WTT-LDAGEYLSGV 148

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSG 207
               ++    +   LD+C     T  P ++ LE++   PL  D+   G+   L  + R    
Sbjct:   149 VEEVNYIPRSNSLDVCLVKTDTSTPFLSLLELR---PLDNDSYLTGSGS-LKTFRRYYLS 204

Query:   208 SNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
             +++    +  D  D  R W+    S      +++K   +   +     P N   +     
Sbjct:   205 NSESVIAYPEDVKD--RIWEPTFDSEWKQIWTTLKPNNSNGYLV----PKNV--LMTAAI 256

Query:   268 AIVSSGAIQYNLAVDAKLDYL-IWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSV 326
                 S   ++   +D+  D L ++ HF+E+ S       R FDIL + +      I   +
Sbjct:   257 PANDSAPFRFTEELDSPTDELYVYLHFSEVQSLQANES-REFDILWSGEVAYEAFIPEYL 315

Query:   327 GSFAAYSWHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVP-NDLSTVPEQVIAMRA 384
                   +   V        L +K         LI+ +E Y +V    L T    V+A++ 
Sbjct:   316 NITTIQTNTPVTCPGGKCNLELKRTKNSTHPPLINAIEFYTVVNFPQLETNETDVVAIKD 375

Query:   385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
             +K +  + +R+ W GDPC P  +  WEG+ C+     T   I+ ++L S GL G I+  I
Sbjct:   376 IKATYEL-NRITWQGDPCVPQKF-IWEGLDCNSKDALTLPRITSLNLSSTGLTGNIAAGI 433

Query:   445 XXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
                                 P  L   +SL  ++LS N   GSIP +L    K
Sbjct:   434 QNLTHLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQALLKREK 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2024987 AT1G07550 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.0e-24, P = 4.0e-24
 Identities = 126/483 (26%), Positives = 200/483 (41%)

Query:    34 IDCGSATSTTDPFNT-----TWQADDRYYTSGATSIVSEPLHFRFPHEKT-LRYFPPSSG 87
             +DCG A S   P+N      T+ +D  +   G T  V + L  +     T LRYFP   G
Sbjct:    32 LDCGLA-SNESPYNEANSNLTYISDADFIQGGKTGNVQKDLLMKLRKPYTVLRYFP--DG 88

Query:    88 KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGA 147
              +NCY +       Y IR    Y NYDG ++SP FD+ +   +   W +    G + DG 
Sbjct:    89 IRNCYSLNVKQDTNYLIRVMFRYGNYDGLNNSPRFDLYLGPNI---WTTI-DMGKSGDGV 144

Query:   148 YSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLT-S 206
               ++    +   LD+C     T  P+I+S+E++   PL YD   I     L NY R   +
Sbjct:   145 LEEIIHITRSNILDICLVKTGTSTPMISSIELR---PLLYDTY-IAQTGSLRNYNRFYFT 200

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
              SN +   +  D  D  R W         +  +S   +   + I   + P +        
Sbjct:   201 DSNNY-IRYPQDVHD--RIWVPLILPEWTHINTSHHVI---DSIDGYDPPQDVLRTGAMP 254

Query:   267 TAIVSSGAIQYNL--AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK------NVT 318
                     I +NL  A D    Y+      E+ ++ T    R F+++VN+K        T
Sbjct:   255 ANASDPMTITWNLKTATDQVYGYIYIAEIMEVQANET----REFEVVVNNKVHFDPFRPT 310

Query:   319 RVD---IFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLST 374
             R +   +FN+V         +    L  T  +  L P++ A  + +G+E     P    T
Sbjct:   311 RFEAQVMFNNVP--LTCEGGFCRLQLIKTPKST-LPPLMNAFEIFTGIE----FPQS-ET 362

Query:   375 VPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQ 434
                 VIA++ ++ S  + +R+ W GDPC P  +  W G++C+     T   I ++DL S 
Sbjct:   363 NQNDVIAVKNIQASYGL-NRISWQGDPCVPKQF-LWTGLSCNVIDVSTPPRIVKLDLSSS 420

Query:   435 GLKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQQS-LVRLDLSDNQFTGSIPDSLTS 493
             GL G I   I                    P  L +   L+ ++LS N+ +G +P +L  
Sbjct:   421 GLNGVIPPSIQNLTQLQELDLSQNNLTGKVPEFLAKMKYLLVINLSGNKLSGLVPQALLD 480

Query:   494 SSK 496
               K
Sbjct:   481 RKK 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126540 AT4G29990 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.1e-24, P = 4.1e-24
 Identities = 128/484 (26%), Positives = 200/484 (41%)

Query:    34 IDCG---SATSTTDPFNTTWQADDRYYTSGAT-SIVSEPLHFRFPHE-KTLRYFPPSSGK 88
             IDCG    ++ T +  N  + +D  +  SG + SIVS+        + + +R FP   GK
Sbjct:    30 IDCGIPDDSSYTDEKTNMKYVSDLGFVESGTSHSIVSDLQTTSLERQFQNVRSFP--EGK 87

Query:    89 KNCYII-PNLPPG-RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
             +NCY I P    G +Y IRT  +Y NYDG S +P FD+ +   L   W S     L  + 
Sbjct:    88 RNCYDIRPQQGKGFKYLIRTRFMYGNYDGFSKTPEFDLYIGANL---WESVV---LINET 141

Query:   147 AY--SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRL 204
             A    ++        + +C        P ++ LE++ +   +YD            Y  L
Sbjct:   142 AIMTKEIIYTPPSDHIHVCLVDKNRGTPFLSVLEIRFLKNDTYDTP----------YEAL 191

Query:   205 TSGSNQWGPGFSNDA-----DDF-GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPN 258
               G  +W  G + +      DDF  R W      +SP  K+   S+T  E   N  +P +
Sbjct:   192 MLG-RRWDFGTATNLQIRYKDDFYDRIWMP---YKSPYQKTLNTSLTIDETNHNGFRPAS 247

Query:   259 YYPMKLYQTAIVSSGAIQYNLAVD-AKLDYLIWFHFAEIDSSVTKAGQRVFDILVND--- 314
                M+        S  +++N A D  +  + I+ HFAE+   + +   R FDI +ND   
Sbjct:   248 IV-MRSAIAPGNESNPLKFNWAPDDPRSKFYIYMHFAEV-RELQRNETREFDIYINDVIL 305

Query:   315 -KNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
              +N     +F    S        + + +        L P++ A  I  +  +  +P D  
Sbjct:   306 AENFRPFYLFTDTRSTVDPVGRKMNEIVLQRTGVSTLPPIINAIEIYQINEFLQLPTD-- 363

Query:   374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
                + V AM  +K   RV  +  W GDPC P + ++WEG+ C  + + T+     ++L S
Sbjct:   364 --QQDVDAMTKIKFKYRV--KKNWQGDPCVPVD-NSWEGLECLHSDNNTSPKSIALNLSS 418

Query:   434 QGLKGYISDKIXXXXXXXXXXXXXXXXXXXXPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492
              GL G I                        P  L    +L  L+L  N+ TGSIP  L 
Sbjct:   419 SGLTGQIDPAFANLTSINKLDLSNNSLTGKVPDFLASLPNLTELNLEGNKLTGSIPAKLL 478

Query:   493 SSSK 496
               SK
Sbjct:   479 EKSK 482

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	533
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-116
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	5e-58
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  355 bits (913), Expect = e-116
 Identities = 194/534 (36%), Positives = 275/534 (51%), Gaps = 23/534 (4%)

Query: 9   FFFLSLLLVLPLSLASSYPYKASYRIDCGS-ATSTTDPFNTTWQADDRYYTSGATSIVSE 67
               S LL +  SLAS  P+  + RI CG+     T P NT W   D  YT G  +  + 
Sbjct: 5   LLAASALLAVLASLASPEPF--TMRISCGARVNVRTAPTNTLW-YKDFAYTGGIPANATR 61

Query: 68  PLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE 127
           P  F  P  KTLRYFP S G +NCY I  +P G Y +R F            P FDVSVE
Sbjct: 62  P-SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVE 120

Query: 128 GTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSY 187
           GT + S +S W      +  +++   F+ DG   +CF+S     P I S+E+ Q+D  +Y
Sbjct: 121 GTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDDKAY 178

Query: 188 D-AATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA--ASRSPNAKSSIKSV 244
           +   + G   IL    RL+ G+ +    F  D D  G  W  D            S +++
Sbjct: 179 NFGPSWGQGVILRTAKRLSCGAGK--SKF--DEDYSGDHWGGDRFWNRMQTFGSGSDQAI 234

Query: 245 TTRERITNTNQPPNYYPMKLYQTAIVSSG---AIQYNLAVDAKLDYLIWFHFAEIDSSVT 301
           +T   I   +  PN+YP  LYQ+A+VS+     + Y + VD   +Y +W HFAEID+S+T
Sbjct: 235 STENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSIT 294

Query: 302 KAGQRVFDILVN-DKNVTRVDIFNSVGS-FAAYSWHYVAKNLSSTELTVKLVPVVGA-AL 358
             G+RVFD+L+N D     VDI    G  + A   +     +S   LT+ L P  G  A+
Sbjct: 295 AEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVA-VSGRTLTIVLQPKKGTHAI 353

Query: 359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPN 418
           I+ +E + ++  +  T+ E+V A++ LK SL +P R GWNGDPC P     W G  C  +
Sbjct: 354 INAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWSGADCQFD 412

Query: 419 KDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD 477
             +    I  + L +QGL+G+I + IS L +L ++NLS NS+ G +P  LG   SL  LD
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP 531
           LS N F GSIP+SL   + L+++ LN N L GRVP  L    +H  +F +    
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  196 bits (499), Expect = 5e-58
 Identities = 96/352 (27%), Positives = 148/352 (42%), Gaps = 39/352 (11%)

Query: 34  IDCGSA--TSTTDPF-NTTWQADDRYYTSGATSIVSEPL--HFRFPHEKTLRYFPPSSGK 88
           IDCG     S TDP    TW +D  +  +G +  +S+     F     KTLR FP   GK
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSSFLSKPYKTLRSFP--DGK 58

Query: 89  KNCYIIPNLPPG--RYYIRTFTVYDNYDGK---SHSPSFDVSVEGTLVFSWRSPWPEGLA 143
           +NCY +P  P    +Y IR   +Y NYDG    S  PSFD+ +   L   W +      +
Sbjct: 59  RNCYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNL---WTTVNLSNDS 115

Query: 144 RDGAYSDLFAFV-KDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYG 202
            D    +    V K   L +C  +  T  P I++LE++ +    Y ++  G +  L    
Sbjct: 116 GDSVVKEYIIHVTKSDTLSVCLVNTGTGTPFISALELRPLPDSLYPSS--GGSQALKLVA 173

Query: 203 RLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPM 262
           RL  G ++    + +D   + R W+        ++    +  T+     ++N  P   P 
Sbjct: 174 RLNFGGSEGTIRYPDDV--YDRIWEPFF-----SSPGWSQISTSLSVDISSNNAPYIPPS 226

Query: 263 KLYQTAIVSSGA-----IQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317
            + QTA+  + A       ++L VD   +Y ++ HFAEI S       R FDI +N K V
Sbjct: 227 AVLQTAVTPTNASAPLNFTWDL-VDPNFEYYVYLHFAEIQSLE----TREFDIYINGKTV 281

Query: 318 -TRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENY 365
              V          A    +         L + LVP  G+    L++ LE +
Sbjct: 282 YGDVSPKYLGTDTGALYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIF 333

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 220 DDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279
           D  G ++++D      +A   +        I  T  P      +LYQT   S  +  Y +
Sbjct: 14  DSDGITYEADTYFTGGSADYYVSDTNGSSSIAGTTDP------ELYQTERYSPSSFSYYI 67

Query: 280 AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDIFNSVGSF 329
                 +Y +  HFAEI       G+RVFD+ V  K V +  DI    G  
Sbjct: 68  PCLENGNYTVILHFAEIYFGEDGLGRRVFDVYVQGKLVLKDFDIVAEAGGK 118

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           +D+ +  L+G I+ +   + +L  L+L+ N   G LP   G + L  LDLS NQF+G++P
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 489 DSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
             L S S+L  + L+ N L G +P+EL S
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSS 521

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 417 PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475
           P K  +   + Q+ L    L G I D++S    LV+L+LS N L G +P+   +   L +
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512
           LDLS NQ +G IP +L +   L  V +++N L G +P
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  +DL      G +  K+  LS L+ L LS N L G +P  L   + LV LDLS NQ +
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           G IP S +    L  + L+ N L G +P+ L
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT 484
           I  I+L +  L G I D I   S +L  LNLS N+  G++P G    +L  LDLS+N  +
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-SIPNLETLDLSNNMLS 153

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
           G IP+ + S S L+++ L  N+L G++P  L ++
Sbjct: 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 431 LGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTGSIPD 489
           L S    G I   ++ L  L  L L +N   G +P  LG+ + L  LDLS N  TG IP+
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 490 SLTSSSKLQLVLLNNNLLEGRVPEEL 515
            L SS  L  ++L +N LEG +P+ L
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494
           L G I   I  L  L++L+LS NSL G +P  + Q Q+L  L L  N FTG IP +LTS 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            +LQ++ L +N   G +P+ L
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTGSI 487
           I LG   L G I  +I  L++L +L+L  N+L G +PS LG    L  L L  N+ +G I
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPE 513
           P S+ S  KL  + L++N L G +PE
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 25/115 (21%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ----------------- 471
           +DLG   L G I + ++ L++L  L L++N L G +P  LGQ                  
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 472 --------SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
                   SL  LDL  N  TG IP SL +   LQ + L  N L G +P  ++S+
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Length = 968

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 29/152 (19%)

Query: 31  SYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLH----FRFPHEKTL----RYF 82
              I+CG     TD    T++A D Y+T G+        +         +  L    RY 
Sbjct: 2   VLAINCG-GPEHTDSDGITYEA-DTYFTGGSADYYVSDTNGSSSIAGTTDPELYQTERYS 59

Query: 83  PPSSGKKNCYIIPNLPPGRYYIRTFTVY-------DNYDGKSHSPSFDVSVEGTLVFSWR 135
           P S      Y IP L  G Y   T  ++       ++  G+     FDV V+G LV    
Sbjct: 60  PSSFS----YYIPCLENGNY---TVILHFAEIYFGEDGLGRRV---FDVYVQGKLVLKDF 109

Query: 136 SPWPEGLARDGAYSDLF--AFVKDGELDLCFY 165
               E   +       +    V DG L++ FY
Sbjct: 110 DIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFY 141

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +DL +  L G I + I   S+L  L+L  N L G +P+ L    SL  L L+ NQ  G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           P  L     L+ + L  N L G +P E+
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQQSLVRLDLSDNQFT 484
           ++ +DL    L G I   +  L NL  L L  N L G +P S    Q L+ LDLSDN  +
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
           G IP+ +     L+++ L +N   G++P  L S+
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRL---DLSDNQFTG 485
           +DL    L G I + +  L NL  L+L +N+  G +P  L   SL RL    L  N+F+G
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSG 346

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519
            IP +L   + L ++ L+ N L G +PE L S G
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFTGSI 487
           + L S    G I   +   +NL  L+LSTN+L G +P GL    +L +L L  N   G I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           P SL +   L+ V L +N   G +P E
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +DL +  L G I + +    NL  L L +NSL G +P  LG  +SL R+ L DN F+G +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 488 PDSLTSSSKLQLVL---LNNNLLEGRV 511
           P   T   KL LV    ++NN L+GR+
Sbjct: 421 PSEFT---KLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT------LPSGLGQQS-LV 474
             + +    LG +  K  ++  +    +L  L LS N  G        L  GL +   L 
Sbjct: 26  QVLRLEGNTLGEEAAKA-LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 475 RLDLSDNQFTGSIP---DSLTSSSKLQLVLLNNNLLEGR 510
            LDLSDN          +SL  SS LQ + LNNN L  R
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           +   +  L NL NL+LS N L           +L  LDLS N+ +  +P  +   S L+ 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 500 VLLNNNLLE 508
           + L+NN + 
Sbjct: 214 LDLSNNSII 222

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	533
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN03150	623	hypothetical protein; Provisional	99.88
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.67
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.49
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.36
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.22
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.21
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.06
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.95
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	98.93
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.24
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.07
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.53
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.81
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.47
PRK15386	426	type III secretion protein GogB; Provisional	95.41
PRK15386	426	type III secretion protein GogB; Provisional	95.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.29
KOG3593	355	consensus Predicted receptor-like serine/threonine	94.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.86
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.8
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.43
KOG3593	355	consensus Predicted receptor-like serine/threonine	92.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.85
smart00370	26	LRR Leucine-rich repeats, outliers.	90.55
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	86.54
smart00370	26	LRR Leucine-rich repeats, outliers.	86.12
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	85.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.44

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=9.2e-89  Score=744.24  Aligned_cols=500  Identities=37%  Similarity=0.653  Sum_probs=418.1

Q ss_pred             hhccCCCCccEEEccCCCCCC-CCCCCceEeeCCCceecCCcccccCCCCCCCCcCceeeecCCCCCCCcceEeecCCCc
Q 009515           22 LASSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPG  100 (533)
Q Consensus        22 ~~~~~~~~~~~~IdCG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~~~~~cY~l~~~~~~  100 (533)
                      .+++.+.+++|+||||++++. +|.+||+|++|..+ +.|.....+.+ ....++|+|+|+||.++|+++||+||+.++|
T Consensus        16 ~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g   93 (623)
T PLN03150         16 ASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDGPENCYNINRVPKG   93 (623)
T ss_pred             cccccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccccccceEeeecCCC
Confidence            333445677799999999876 67899999997444 43433322222 2345789999999987789999999998999


Q ss_pred             eEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEeecCCCCceeeeEEEE
Q 009515          101 RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQ  180 (533)
Q Consensus       101 ~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~~~~~~pfIs~iEl~  180 (533)
                      +|+||+||+|||||+.++.|.|||++|++.|.+....|..  ....++||+|+.++++.++|||+|++.++||||+||||
T Consensus        94 ~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~  171 (623)
T PLN03150         94 HYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEIL  171 (623)
T ss_pred             cEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEE
Confidence            9999999999999998889999999999776664433322  23468899999999999999999999999999999999


Q ss_pred             EcCCCCccccC-cCccceEEEEeeeccCCCCCCCCCcCCCCCC--CcccccCCCCCCCCCCCCceEeeecceecCCCCCC
Q 009515          181 QIDPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPP  257 (533)
Q Consensus       181 ~l~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~--dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~  257 (533)
                      |+|+++|.... .+++.+|++++|+|||+......++|+||++  ||+|.+|..|..+    .+..+++...|+++...|
T Consensus       172 ~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st~~~I~~~~~~~  247 (623)
T PLN03150        172 QVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAISTENVIKKASNAP  247 (623)
T ss_pred             EcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----cccccccccccccccCCC
Confidence            99999996432 2346689999999999976555578999999  9999999887632    244566777787766667


Q ss_pred             CCchHHHHHHhhccC---cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCe-ecccccccccCCC-ccee
Q 009515          258 NYYPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGS-FAAY  332 (533)
Q Consensus       258 ~~~P~~V~~TA~~~~---~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~-~l~~~di~~~~~~-~~~~  332 (533)
                      +.+|+.||||||++.   .+++|.|+++++++|+|||||||++......++|+|+|++||+ .+.++|+....+. ..+.
T Consensus       248 ~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~  327 (623)
T PLN03150        248 NFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTAL  327 (623)
T ss_pred             ccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccce
Confidence            779999999999984   4799999999999999999999998644566899999999998 5678888766654 5566


Q ss_pred             eeeeeEeecCCceEEEEecccchh-hhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515          333 SWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (533)
Q Consensus       333 ~~~l~~l~l~~n~L~~~l~~~~~~-~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~  411 (533)
                      ++++.+. ..++.|+++|.|..++ |+|||+||+++.+.+..+.++|+.+|+.+|+.+..+...+|+++||.|.. +.|.
T Consensus       328 ~~~~~v~-~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~-~~w~  405 (623)
T PLN03150        328 VLNKTVA-VSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWS  405 (623)
T ss_pred             EEEeEEe-ecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc-cccc
Confidence            6555443 3457899999998776 99999999999998889999999999999998876544589999998765 6899


Q ss_pred             ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      |+.|..........++.|+|++|++.|.+|..++.|++|+.|+|++|++.|.+|..++. ++|+.|+|++|+++|.+|+.
T Consensus       406 Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        406 GADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             cceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence            99997543222346899999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +++|++|+.|+|++|+++|.+|..++....++..+++++|+
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            99999999999999999999999998765457899999986

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=3.9e-62  Score=497.69  Aligned_cols=319  Identities=27%  Similarity=0.469  Sum_probs=244.3

Q ss_pred             EccCCCCCC---CC-CCCceEeeCCCceecCCcccccCC----CCCCCCcCceeeecCCCCCCCcceEeecC--CCceEE
Q 009515           34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSEP----LHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY  103 (533)
Q Consensus        34 IdCG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~~----~~~~~~~y~t~R~f~~~~~~~~cY~l~~~--~~~~yl  103 (533)
                      ||||++.+.   +| .+||+|++|++|+.+|.+..++..    .....++|+|||+||  +|.|+||+||+.  +++|||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl   78 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL   78 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence            799998664   44 679999999988888887665321    134468999999999  477899999997  456999


Q ss_pred             EEEEeecCCCCCCC-----CCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEec-CCeEEEEEeecCCCC-ceeee
Q 009515          104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS  176 (533)
Q Consensus       104 vRl~F~~~nyd~~~-----~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~-~~~l~v~~~~~~~~~-pfIs~  176 (533)
                      |||||+|||||+++     +++.|||++|++.|.+.....   ....+++||+++.+. ++.++|||+|++.|. |||||
T Consensus        79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~---~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa  155 (347)
T PF12819_consen   79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN---SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA  155 (347)
T ss_pred             EEEEeccccccccccccccCCcceEEEECCceeEEEEecC---CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence            99999999999864     257799999999864433211   112468999888887 799999999999887 99999


Q ss_pred             EEEEEcCCCCccccCcCccceEEEEeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEeeecceec-CCCC
Q 009515          177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ  255 (533)
Q Consensus       177 iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~-~~~~  255 (533)
                      |||||||+++|+.....++.+|++++|+|||+...  .+||++|++||+|.+...      ...|..++++..|+ ....
T Consensus       156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~--~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~  227 (347)
T PF12819_consen  156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS--FIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN  227 (347)
T ss_pred             EEEEECCccceeccccCCCceeEEEEeecCCCccc--ccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence            99999999999543234678899999999998641  278999999999996521      13567777766676 3334


Q ss_pred             CCCCchHHHHHHhhccC-----cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeecccccccc-cCCC-
Q 009515          256 PPNYYPMKLYQTAIVSS-----GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS-  328 (533)
Q Consensus       256 ~~~~~P~~V~~TA~~~~-----~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l~~~di~~-~~~~-  328 (533)
                      .++.+|++|||||+++.     .+++|.+ ++++..|+||||||||+......++|+|+|++||+...+ ++.. ..+. 
T Consensus       228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~  305 (347)
T PF12819_consen  228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD  305 (347)
T ss_pred             ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence            46679999999999992     3677777 888999999999999997655566899999999995543 4432 2222 


Q ss_pred             cceeeeeeeEeecCCceEEEEecccchh---hhhhccccccc
Q 009515          329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL  367 (533)
Q Consensus       329 ~~~~~~~l~~l~l~~n~L~~~l~~~~~~---~iLn~lEi~~l  367 (533)
                      ..+.+.++.+....+..+.++|.++.++   |+|||+|||++
T Consensus       306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            3344444444333445788899988776   99999999975

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=99.88  E-value=5.7e-22  Score=217.74  Aligned_cols=318  Identities=18%  Similarity=0.254  Sum_probs=195.6

Q ss_pred             EEEccCCCCCC--CC----CC--CceEeeCCCceecCC-----ccccc----CCCCCCCCcCceeeecCCCCCCCcceEe
Q 009515           32 YRIDCGSATST--TD----PF--NTTWQADDRYYTSGA-----TSIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYII   94 (533)
Q Consensus        32 ~~IdCG~~~~~--~d----~~--~~~w~~Dd~~~~~g~-----~~~~~----~~~~~~~~~y~t~R~f~~~~~~~~cY~l   94 (533)
                      +|||||+.+..  .|    .-  .|.|.+|+.|.....     ...+.    .++..|..+|+|+|.+... ....+|++
T Consensus       194 ~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~~  272 (623)
T PLN03150        194 KRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYTM  272 (623)
T ss_pred             EEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEEe
Confidence            59999986432  22    22  699999876543211     11111    1222355689999998752 24569999


Q ss_pred             ecCCCceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEeccCCCcccc-cCCceEEEEEEEecCCeEEEEEeecCCCCc
Q 009515           95 PNLPPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDPP  172 (533)
Q Consensus        95 ~~~~~~~ylvRl~F~~~nyd-~~~~~~~Fdv~~~~~~~l~~~~~~~~~~-~~~~~~~e~i~~~~~~~l~v~~~~~~~~~p  172 (533)
                      ++.+++.|+||+||..-... .....++|||++++..+++.+|+....+ ...++++++.+.+.++.+.|+|+|.....|
T Consensus       273 ~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p  352 (623)
T PLN03150        273 DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA  352 (623)
T ss_pred             ecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence            99888999999999644321 1224688999999999999888743222 235678899888878889999999876679


Q ss_pred             eeeeEEEEEcCCCCccccCcCccceEEEEeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEeeecceecC
Q 009515          173 VIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITN  252 (533)
Q Consensus       173 fIs~iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~  252 (533)
                      +||||||+.+...-..+. .....+|..+. -..+            +...--|..|.                      
T Consensus       353 ilNaiEI~~~~~~~~~t~-~~~~~aL~~~k-~~~~------------~~~~~~W~g~~----------------------  396 (623)
T PLN03150        353 IINAIEVFEIITAESKTL-LEEVSALQTLK-SSLG------------LPLRFGWNGDP----------------------  396 (623)
T ss_pred             eeeeeeeeeccccccccC-chHHHHHHHHH-HhcC------------CcccCCCCCCC----------------------
Confidence            999999987754211000 00001111100 0000            00000121100                      


Q ss_pred             CCCCCCCchHHHHHHhhccCcceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeecccccccccCCCccee
Q 009515          253 TNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAY  332 (533)
Q Consensus       253 ~~~~~~~~P~~V~~TA~~~~~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l~~~di~~~~~~~~~~  332 (533)
                        ..    |..             +.|.   +    |  - |....                .          .+     
T Consensus       397 --C~----p~~-------------~~w~---G----v--~-C~~~~----------------~----------~~-----  416 (623)
T PLN03150        397 --CV----PQQ-------------HPWS---G----A--D-CQFDS----------------T----------KG-----  416 (623)
T ss_pred             --CC----Ccc-------------cccc---c----c--e-eeccC----------------C----------CC-----
Confidence              00    000             0000   0    0  0 00000                0          00     


Q ss_pred             eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      ...+..++|++|.|.+.+|+.+.                                                         
T Consensus       417 ~~~v~~L~L~~n~L~g~ip~~i~---------------------------------------------------------  439 (623)
T PLN03150        417 KWFIDGLGLDNQGLRGFIPNDIS---------------------------------------------------------  439 (623)
T ss_pred             ceEEEEEECCCCCccccCCHHHh---------------------------------------------------------
Confidence            00123344455544332221111                                                         


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                               .+..|+.|+|++|.+.|.+|+.++.+++|+.|+|++|+++|.+|+.++. ++|+.|+|++|+++|.+|..+
T Consensus       440 ---------~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        440 ---------KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             ---------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence                     1123778999999999999999999999999999999999999999998 999999999999999999988


Q ss_pred             CCC-cCCCEEEeecccCcccCc
Q 009515          492 TSS-SKLQLVLLNNNLLEGRVP  512 (533)
Q Consensus       492 ~~l-~~L~~L~L~~N~l~g~lP  512 (533)
                      +.+ .++..+++.+|......|
T Consensus       511 ~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        511 GGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             hhccccCceEEecCCccccCCC
Confidence            764 467788999887654444

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.67  E-value=8.7e-17  Score=148.15  Aligned_cols=141  Identities=28%  Similarity=0.401  Sum_probs=90.3

Q ss_pred             cEEEccCCCCCCCCCCCceEeeCCCceecCCcc------------cccC--CCCCCCCcCceeeecCCCCCCCcceEeec
Q 009515           31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IVSE--PLHFRFPHEKTLRYFPPSSGKKNCYIIPN   96 (533)
Q Consensus        31 ~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~~~--~~~~~~~~y~t~R~f~~~~~~~~cY~l~~   96 (533)
                      .++||||++.. +|..|..|.+| .++.+|...            ....  ..+..+.+|+|.|+-+.    .+.|.||+
T Consensus         2 ~~~IN~Gg~~~-~~~~g~~w~~D-~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~   75 (174)
T PF11721_consen    2 VLRINAGGPAY-TDSSGIVWEAD-QYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV   75 (174)
T ss_dssp             EEEEEETSSSE-EETTTEEE-SS-SSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred             EEEEECCCCcc-cCCCCCEEcCC-CCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence            37999999865 77899999995 444433330            0001  11223579999999764    28999997


Q ss_pred             CCCceEEEEEEeecCCCCC-----CCCCCceEEEECCEEEEeccCCCcccccCC-ceEEEE-EEEecCCeEEEEEee---
Q 009515           97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS---  166 (533)
Q Consensus        97 ~~~~~ylvRl~F~~~nyd~-----~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~-~~~~e~-i~~~~~~~l~v~~~~---  166 (533)
                      .+.|.|.|||||....+..     ....++|||+++|..+++++|++.+++... ++++++ -+.+.++.|.|+|..   
T Consensus        76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~  155 (174)
T PF11721_consen   76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK  155 (174)
T ss_dssp             -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred             CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence            7999999999995432222     123789999999999999999988876554 677777 446799999999996   


Q ss_pred             --------cCCCCceeeeE
Q 009515          167 --------FATDPPVIASL  177 (533)
Q Consensus       167 --------~~~~~pfIs~i  177 (533)
                              ...+.|.||||
T Consensus       156 ~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  156 GTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             SEEEEEEESSSSSSSEEEE
T ss_pred             CcEEeeccccCCCcEEeeC
Confidence                    44566888886

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.65  E-value=9.7e-17  Score=147.82  Aligned_cols=143  Identities=24%  Similarity=0.384  Sum_probs=84.8

Q ss_pred             EeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEee-ecceecCCCCCCCCchHHHHHHhhccCcceEEEE
Q 009515          201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT-TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL  279 (533)
Q Consensus       201 ~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~-t~~~i~~~~~~~~~~P~~V~~TA~~~~~~l~~~~  279 (533)
                      ++|||||+..      + +|..++.|.+|+.|..+.+. -..... ...........+...+..+|||+|.....++|.+
T Consensus         2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~-y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~i   73 (174)
T PF11721_consen    2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWG-YYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDI   73 (174)
T ss_dssp             EEEEEETSSS------E-EETTTEEE-SSSSSTTSS------------SSTTS--TTS-HHHHHTTT-----SSSEEEEE
T ss_pred             EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCcc-cccccccccccccccccccCCCchhhhHhhcCCCCceEEEE
Confidence            5799999875      2 57789999999988754440 000000 0000111111223357799999997544799999


Q ss_pred             ecCCCCcEEEEEEeeccccCc----CCCceeEEEEEECCe-ecccccccccCCCcc-eeeeeeeEeecCCceEEEEec
Q 009515          280 AVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV  351 (533)
Q Consensus       280 ~~~~~~~y~v~lhF~ei~~~~----~~~~~R~F~I~ing~-~l~~~di~~~~~~~~-~~~~~l~~l~l~~n~L~~~l~  351 (533)
                      |+.+++.|.|+|||+|+....    ...++|+|||++||+ .+.++||+..+|... +....+......++.|.+.|.
T Consensus        74 p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~  151 (174)
T PF11721_consen   74 PVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFV  151 (174)
T ss_dssp             E--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEE
T ss_pred             ecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEE
Confidence            976789999999999998643    236899999999998 789999999887743 555555344456777877776

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.49  E-value=1.7e-13  Score=159.71  Aligned_cols=147  Identities=30%  Similarity=0.498  Sum_probs=98.7

Q ss_pred             ChhHHHHHHHHHHhcCCCC--CCCCCC-CCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCC
Q 009515          375 VPEQVIAMRALKESLRVPD--RMGWNG-DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLV  451 (533)
Q Consensus       375 ~p~~~~~l~~lk~~~~~~~--~~~w~g-dpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~  451 (533)
                      .|+|..+|.++|+.+..+.  ..+|+. +.|     |.|.|+.|...     .+++.|+|++|++.|.++..+..+++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~-----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~   96 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADV-----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ   96 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCC-----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence            6789999999999885432  246853 455     79999999742     2467777777777777777777777777


Q ss_pred             EEEccCCCCCCCCCCccC-C-CCccEEEccCCc----------------------cccCCCccCCCCcCCCEEEeecccC
Q 009515          452 NLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQ----------------------FTGSIPDSLTSSSKLQLVLLNNNLL  507 (533)
Q Consensus       452 ~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~----------------------l~g~iP~~~~~l~~L~~L~L~~N~l  507 (533)
                      .|+|++|+++|.+|..+. . ++|++|+|++|+                      +++.+|..++.+++|++|+|++|.+
T Consensus        97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            777777777766666554 3 555555555554                      4455555566666666666666666


Q ss_pred             cccCchhHHhcccCCcEEEccCCCC
Q 009515          508 EGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       508 ~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .+.+|..++++.. |++|+|++|.+
T Consensus       177 ~~~~p~~~~~l~~-L~~L~L~~n~l  200 (968)
T PLN00113        177 VGKIPNSLTNLTS-LEFLTLASNQL  200 (968)
T ss_pred             cccCChhhhhCcC-CCeeeccCCCC
Confidence            6666666666554 66676666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.47  E-value=5.7e-14  Score=163.79  Aligned_cols=109  Identities=31%  Similarity=0.478  Sum_probs=103.3

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.|+|++|++.+.+|..+.++++|+.|++++|++.|.+|..+.. ++|+.|+|++|+++|.+|..++.+++|+.|+|
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            45899999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++|+++|.+|..+..+.. |+.|++++|++.
T Consensus       555 s~N~l~~~~p~~l~~l~~-L~~l~ls~N~l~  584 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVES-LVQVNISHNHLH  584 (968)
T ss_pred             CCCcccccCChhHhcCcc-cCEEeccCCcce
Confidence            999999999999998876 999999999863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=2.1e-14  Score=126.80  Aligned_cols=172  Identities=22%  Similarity=0.353  Sum_probs=141.7

Q ss_pred             eeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceee
Q 009515          336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC  415 (533)
Q Consensus       336 l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c  415 (533)
                      .+.+.++.|+++ .+||.+..  |..+|++.+.+|++..+|..+..|.++|..- +.                 ...+.-
T Consensus        35 ITrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~ln-vg-----------------mnrl~~   93 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRILN-VG-----------------MNRLNI   93 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhhee-cc-----------------hhhhhc
Confidence            455678999999 78888887  8999999999999999999999999997642 21                 112222


Q ss_pred             cCCCCCceeEEEEEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          416 HPNKDETAVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       416 ~~~~~~~~~~L~~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .+...+..+.|+.|||+.|++. ..+|..|..|+.|+-|+|+.|.+. .+|+.+++ ++|+.|.+..|.+- ++|.+++.
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~  171 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD  171 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence            2344455677999999999987 468999999999999999999998 99999999 99999999999999 89999999


Q ss_pred             CcCCCEEEeecccCcccCchhHHhccc--CCcEEEccCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGV--HGGAFEYVKTP  531 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~--~L~~L~ls~N~  531 (533)
                      |..|++|++.+|+++ .+|++++.+..  +-+.+.+.+|+
T Consensus       172 lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP  210 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP  210 (264)
T ss_pred             HHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence            999999999999999 99999987642  12344555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.36  E-value=1e-13  Score=143.41  Aligned_cols=172  Identities=21%  Similarity=0.303  Sum_probs=141.0

Q ss_pred             eEeecCCceEE-EEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceee
Q 009515          337 VAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC  415 (533)
Q Consensus       337 ~~l~l~~n~L~-~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c  415 (533)
                      +-+++++|.++ ..||.....  +..+.-+++....+..+|+++.++.+|..+-...+.                  +.-
T Consensus        10 rGvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~------------------L~~   69 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ------------------LIS   69 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHH--hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh------------------hHh
Confidence            34567888888 577777776  888899999999999999999999999764322111                  111


Q ss_pred             cCCCCCceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc-CC
Q 009515          416 HPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS-LT  492 (533)
Q Consensus       416 ~~~~~~~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~-~~  492 (533)
                      .......+++|+.+.+..|++.. -+|+.+..|..|..||||+|+|. ++|..+.. +++-+|+||+|++. .||.. +.
T Consensus        70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfi  147 (1255)
T KOG0444|consen   70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFI  147 (1255)
T ss_pred             hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHH
Confidence            11223345568888999999863 58999999999999999999999 99999998 99999999999999 88876 56


Q ss_pred             CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|..|-.|||++|++. .+|+.+.++.. |++|+|++|+|
T Consensus       148 nLtDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPL  185 (1255)
T ss_pred             hhHhHhhhccccchhh-hcCHHHHHHhh-hhhhhcCCChh
Confidence            8999999999999999 99999999876 99999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=9.7e-14  Score=137.22  Aligned_cols=189  Identities=19%  Similarity=0.238  Sum_probs=113.6

Q ss_pred             eeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCC---CCCCCCCCCCC--CCC
Q 009515          336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMG---WNGDPCAPTNW--DAW  410 (533)
Q Consensus       336 l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~---w~gdpc~~~~~--~~w  410 (533)
                      ++++++.+|++. ++|+.++.  +.++.-+.++.+.++.+|+++..+..+++..-..+..-   -...-|.....  ..-
T Consensus        70 l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   70 LTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             eeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence            566777777777 77777776  55666666666667777777776666665432211100   00000000000  000


Q ss_pred             cc--------eeec---------------CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc
Q 009515          411 EG--------ITCH---------------PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG  467 (533)
Q Consensus       411 ~g--------v~c~---------------~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~  467 (533)
                      +.        +.|.               +...-...+|++||..+|-+. .+|+.++.|.+|+.|+|..|++. .+| +
T Consensus       147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e  223 (565)
T KOG0472|consen  147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E  223 (565)
T ss_pred             cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C
Confidence            00        0110               000011234666666666665 67777777777777777777776 666 4


Q ss_pred             cCC-CCccEEEccCCccccCCCccCC-CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          468 LGQ-QSLVRLDLSDNQFTGSIPDSLT-SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       468 l~~-~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |.. ..|.+|+++.|+++ .+|.+++ ++.+|.+|||..|+++ ++|.+++.+.. |..||+|+|.++
T Consensus       224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs-L~rLDlSNN~is  288 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS-LERLDLSNNDIS  288 (565)
T ss_pred             CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh-hhhhcccCCccc
Confidence            555 66777777777777 6776655 6778888888888888 78888887765 888888888764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.22  E-value=1.8e-12  Score=133.60  Aligned_cols=187  Identities=20%  Similarity=0.214  Sum_probs=122.3

Q ss_pred             eeeEeecCCceEEEEecc-cchhhhhhccccccccCCCCCCChhHHHH-HHHHHHhcCCCCC------CCCCCCCCCCCC
Q 009515          335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQVIA-MRALKESLRVPDR------MGWNGDPCAPTN  406 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~-~~~~~iLn~lEi~~l~~~~~~~~p~~~~~-l~~lk~~~~~~~~------~~w~gdpc~~~~  406 (533)
                      .+..++|++|.++ .+.. ...+  +|.+-.++++.|.++++|.-+.. |.+|+.+-...+.      ..++|-|-    
T Consensus       174 ni~~L~La~N~It-~l~~~~F~~--lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S----  246 (873)
T KOG4194|consen  174 NIKKLNLASNRIT-TLETGHFDS--LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS----  246 (873)
T ss_pred             CceEEeecccccc-ccccccccc--cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh----
Confidence            5677888888877 3332 3344  88888889999999999987666 7777654221111      01122111    


Q ss_pred             CCCCcceeecCCCC--------CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEE
Q 009515          407 WDAWEGITCHPNKD--------ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD  477 (533)
Q Consensus       407 ~~~w~gv~c~~~~~--------~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~  477 (533)
                         ...+.-..+++        -.+..+++|+|..|++...-...+.+|++|+.|+||.|.+...-++.|.. ++|++|+
T Consensus       247 ---l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  247 ---LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD  323 (873)
T ss_pred             ---hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence               11111111111        12345788888888888777777888888888888888888667778877 8888888


Q ss_pred             ccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       478 Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++.--++++..|..|+.|+|+.|.+. .+-+.-+...++|++|||++|.|
T Consensus       324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence            8888888444456667777777777777776 56555555555577777777655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.21  E-value=1.3e-12  Score=135.46  Aligned_cols=193  Identities=23%  Similarity=0.249  Sum_probs=106.3

Q ss_pred             eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCC---CCCCCCC-CCCC
Q 009515          333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGW---NGDPCAP-TNWD  408 (533)
Q Consensus       333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w---~gdpc~~-~~~~  408 (533)
                      .+...+++++.|++. ++|...- .-|..+-.++++.|.+.++|+++..|..|+.+-...++...   ..-|..- ....
T Consensus       125 AKn~iVLNLS~N~Ie-tIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL  202 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIE-TIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL  202 (1255)
T ss_pred             hcCcEEEEcccCccc-cCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence            345566777777776 5554332 11445556788899999999999998888764322111100   0001000 0000


Q ss_pred             CCcc----eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcc
Q 009515          409 AWEG----ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF  483 (533)
Q Consensus       409 ~w~g----v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l  483 (533)
                      ...+    +.-.+..+..+.+|..++|+.|.+. .+|+.+-++.+|+.|+||+|+++ .+-...+. .+|+.|+||.|+|
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh
Confidence            0000    0001122233445666777777776 66777777777777777777666 55444444 6666666666666


Q ss_pred             ccCCCccCCCCcCC-------------------------CEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          484 TGSIPDSLTSSSKL-------------------------QLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       484 ~g~iP~~~~~l~~L-------------------------~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      + .+|+.+.+|++|                         +.+..++|+++ -+|..++++.+ |+.|.|++|.|
T Consensus       281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k-L~kL~L~~NrL  351 (1255)
T KOG0444|consen  281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK-LQKLKLDHNRL  351 (1255)
T ss_pred             c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH-HHHhcccccce
Confidence            6 555555555554                         44455555555 55666666665 66666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=6.3e-12  Score=124.56  Aligned_cols=175  Identities=23%  Similarity=0.247  Sum_probs=133.6

Q ss_pred             eeeEeecCCceEEEEecccchh-hhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCCCCcc
Q 009515          335 HYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDR-MGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~-~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~-~~w~gdpc~~~~~~~w~g  412 (533)
                      ..+.+++++-+++ .+|..+-. +-=+.+.+..++.|++.++|.++..+..+...+...++ .+|.+.            
T Consensus       363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~------------  429 (565)
T KOG0472|consen  363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL------------  429 (565)
T ss_pred             hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH------------
Confidence            3445556666665 44443322 22234556677888999999999999888776655432 345321            


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc-c
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-S  490 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~-~  490 (533)
                      ..|      .+.+++-|+|++|-+. .+|.+++.+..|+.|++|.|++. .+|..+-. ..|+.+-.++|++. .+|. .
T Consensus       430 ~l~------~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~  500 (565)
T KOG0472|consen  430 ELS------QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSG  500 (565)
T ss_pred             HHH------hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHH
Confidence            112      2345778999999887 89999999999999999999998 89988877 77888777788888 5555 4


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|.+|..|||.+|.+. .+|+.++++.. |++|++.+|+|+
T Consensus       501 l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn-L~hLeL~gNpfr  541 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTN-LRHLELDGNPFR  541 (565)
T ss_pred             hhhhhhcceeccCCCchh-hCChhhccccc-eeEEEecCCccC
Confidence            999999999999999999 99999999887 999999999985

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.06  E-value=1.2e-11  Score=109.50  Aligned_cols=150  Identities=21%  Similarity=0.310  Sum_probs=123.2

Q ss_pred             ccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcccc
Q 009515          361 GLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYI  440 (533)
Q Consensus       361 ~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~  440 (533)
                      .+.-+.++.|.+..+|+.++.|..+... ..     |+.            .+.-.+..++.++.|+.|+++-|.+. .+
T Consensus        34 ~ITrLtLSHNKl~~vppnia~l~nlevl-n~-----~nn------------qie~lp~~issl~klr~lnvgmnrl~-~l   94 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVVPPNIAELKNLEVL-NL-----SNN------------QIEELPTSISSLPKLRILNVGMNRLN-IL   94 (264)
T ss_pred             hhhhhhcccCceeecCCcHHHhhhhhhh-hc-----ccc------------hhhhcChhhhhchhhhheecchhhhh-cC
Confidence            3444677888899999999999888543 22     211            11222334455677999999999998 88


Q ss_pred             chhhhccCCCCEEEccCCCCCC-CCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhc
Q 009515          441 SDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI  518 (533)
Q Consensus       441 p~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l  518 (533)
                      |..|+.++.|+.|||+.|++.. .+|..+.. ..|+.|+|+.|.+. .+|..+++|++|+.|.+..|.+. ++|++++.+
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l  172 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL  172 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence            9999999999999999999974 47777777 88999999999999 89999999999999999999999 999999999


Q ss_pred             ccCCcEEEccCCCC
Q 009515          519 GVHGGAFEYVKTPN  532 (533)
Q Consensus       519 ~~~L~~L~ls~N~l  532 (533)
                      .+ |+.|.+.+|.+
T Consensus       173 t~-lrelhiqgnrl  185 (264)
T KOG0617|consen  173 TR-LRELHIQGNRL  185 (264)
T ss_pred             HH-HHHHhccccee
Confidence            88 99999999975

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.97  E-value=1.3e-10  Score=126.11  Aligned_cols=174  Identities=26%  Similarity=0.297  Sum_probs=123.3

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhc-cccccccCCCCCCChhHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISG-LENYALVPNDLSTVPEQV-IAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~-lEi~~l~~~~~~~~p~~~-~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~  411 (533)
                      ..++.+++..|+|. .+|+..- .++++ ++.+..+.+.++++|.-- ..+..+..++.. +  +.-+|.|.       .
T Consensus       310 ~sL~tLdL~~N~L~-~lp~~~l-~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-n--N~Ltd~c~-------p  377 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLP-SLPDNFL-AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-N--NHLTDSCF-------P  377 (1081)
T ss_pred             ceeeeeeehhcccc-ccchHHH-hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-c--Ccccccch-------h
Confidence            35677777777776 6666322 33444 566666666666555211 112222222322 1  23345553       3


Q ss_pred             ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      -+.|.       ..|+.|+|++|.|.......+.++..|+.|+||+|+|+ .+|..+.. ..|++|...+|++. .+| +
T Consensus       378 ~l~~~-------~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e  447 (1081)
T KOG0618|consen  378 VLVNF-------KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E  447 (1081)
T ss_pred             hhccc-------cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence            33332       35999999999999666667899999999999999999 99999998 99999999999999 899 7


Q ss_pred             CCCCcCCCEEEeecccCc-ccCchhHHhcccCCcEEEccCCC
Q 009515          491 LTSSSKLQLVLLNNNLLE-GRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~-g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +.+++.|+.+|++.|+++ +.+|...-.  ..|++|||++|.
T Consensus       448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNT  487 (1081)
T ss_pred             hhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCc
Confidence            899999999999999997 344443321  459999999995

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.97  E-value=1.1e-10  Score=126.43  Aligned_cols=192  Identities=19%  Similarity=0.265  Sum_probs=134.3

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCC---------------
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWN---------------  398 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~---------------  398 (533)
                      ..+..++++.|+++ .+|.-++.  +..+|.+++..|.+..+|.++..+.+++.+...-+.....               
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence            35667777778777 55643444  6677888888888888898888888876643111100000               


Q ss_pred             ---CCCCCCCCCC-------CCcceeecCCC------CCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCC
Q 009515          399 ---GDPCAPTNWD-------AWEGITCHPNK------DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG  462 (533)
Q Consensus       399 ---gdpc~~~~~~-------~w~gv~c~~~~------~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g  462 (533)
                         .-+-.|....       ..-++.|..-.      ......|+.|.+.+|.|+..+-+.+.+..+|+.|+|+.|+|. 
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-  396 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-  396 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence               0000010000       00111111100      012234667788888888888888999999999999999998 


Q ss_pred             CCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          463 TLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       463 ~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .+|+..-.  ..|+.|+||+|+|+ .+|.++..+..|++|...+|++. .+| ++..+.. |+.+|+|.|+|+
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q-L~~lDlS~N~L~  465 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ-LKVLDLSCNNLS  465 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc-ceEEecccchhh
Confidence            88876554  89999999999999 99999999999999999999999 899 7888877 999999999874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=8.1e-11  Score=121.46  Aligned_cols=192  Identities=21%  Similarity=0.306  Sum_probs=145.4

Q ss_pred             EEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHh
Q 009515          309 DILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKES  388 (533)
Q Consensus       309 ~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~  388 (533)
                      .+.++|..+..|+.    +.......+-+..+++.|++. .+|.....  +..+|.+-+..|.+.++|+.+..|.++.-.
T Consensus        54 ~l~Ls~rrlk~fpr----~a~~~~ltdt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l  126 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPR----GAASYDLTDTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFL  126 (722)
T ss_pred             ccccccchhhcCCC----ccccccccchhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHh
Confidence            34566666666643    222222234455678888887 66666554  566777777788889999988888887654


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc
Q 009515          389 LRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL  468 (533)
Q Consensus       389 ~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l  468 (533)
                      ....+..+-            ...-.|.-       -|+.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..+
T Consensus       127 ~ls~NqlS~------------lp~~lC~l-------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql  185 (722)
T KOG0532|consen  127 DLSSNQLSH------------LPDGLCDL-------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL  185 (722)
T ss_pred             hhccchhhc------------CChhhhcC-------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh
Confidence            332221111            11112321       2888999999998 78999999999999999999999 899999


Q ss_pred             CC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          469 GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       469 ~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +. .+|+.|.+..|++. .+|+++..| .|..||++.|+++ .||-.+.++.. |++|-|.+|+|
T Consensus       186 ~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~-Lq~l~LenNPL  246 (722)
T KOG0532|consen  186 GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRH-LQVLQLENNPL  246 (722)
T ss_pred             hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhh-heeeeeccCCC
Confidence            99 99999999999999 889988854 6889999999999 99999999775 99999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.95  E-value=6.3e-10  Score=115.21  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCC-CCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~i-P~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      .|..|.|+.|+++...+..|.+|+.|+.|+|..|++. .+ --.+.. ++|+.|.|..|+++.--...|-.|.++++|+|
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            3555666666666555555666666666666666664 22 112233 66666666666666333334556777778888


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +.|+++..-...++++.+ |+.|+||.|.|
T Consensus       277 ~~N~l~~vn~g~lfgLt~-L~~L~lS~NaI  305 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLFGLTS-LEQLDLSYNAI  305 (873)
T ss_pred             ccchhhhhhcccccccch-hhhhccchhhh
Confidence            888877433445677666 88888888865

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=98.93  E-value=5.6e-09  Score=107.05  Aligned_cols=150  Identities=23%  Similarity=0.315  Sum_probs=94.2

Q ss_pred             EEEccCCCCC---C-CCCCCceEeeC---CCc--eecCCccc---ccCCCCCCCCcCceeeecCCCC-CCCcceEeecCC
Q 009515           32 YRIDCGSATS---T-TDPFNTTWQAD---DRY--YTSGATSI---VSEPLHFRFPHEKTLRYFPPSS-GKKNCYIIPNLP   98 (533)
Q Consensus        32 ~~IdCG~~~~---~-~d~~~~~w~~D---d~~--~~~g~~~~---~~~~~~~~~~~y~t~R~f~~~~-~~~~cY~l~~~~   98 (533)
                      +|++||++..   + .|.-.|.|.+.   ..+  +.+..+..   .......|..+|+|||.-.... .-...|.+ +.+
T Consensus       181 ~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~  259 (347)
T PF12819_consen  181 YRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDP  259 (347)
T ss_pred             EeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CCC
Confidence            6899999852   2 55678999962   111  11111110   1113345667899999977532 01235666 666


Q ss_pred             CceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecC-CeEEEEEeecCCC--Ccee
Q 009515           99 PGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPVI  174 (533)
Q Consensus        99 ~~~ylvRl~F~~~nyd-~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~-~~l~v~~~~~~~~--~pfI  174 (533)
                      +..|+||+||..=... .....++|+|++|+..+.+.++.........+.++++++.+.+ +.+.|+|+++..+  -|+|
T Consensus       260 ~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiL  339 (347)
T PF12819_consen  260 GFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPIL  339 (347)
T ss_pred             CccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCcee
Confidence            7799999999632111 1122689999999998765444321111223456788877755 5799999998765  4999


Q ss_pred             eeEEEEEc
Q 009515          175 ASLEVQQI  182 (533)
Q Consensus       175 s~iEl~~l  182 (533)
                      ||+||..+
T Consensus       340 NalEIy~v  347 (347)
T PF12819_consen  340 NALEIYKV  347 (347)
T ss_pred             EeeeeEeC
Confidence            99999864

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.87  E-value=4e-10  Score=116.44  Aligned_cols=157  Identities=23%  Similarity=0.353  Sum_probs=116.7

Q ss_pred             EeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecC
Q 009515          338 AKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHP  417 (533)
Q Consensus       338 ~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~  417 (533)
                      .+.+..|.+. .+|..+.+  |+++-.++++.|+++.+|..+- .+-||.++..                  -+.++|.+
T Consensus       102 ~liLy~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC-~lpLkvli~s------------------NNkl~~lp  159 (722)
T KOG0532|consen  102 SLILYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLC-DLPLKVLIVS------------------NNKLTSLP  159 (722)
T ss_pred             HHHHHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhh-cCcceeEEEe------------------cCccccCC
Confidence            3445566666 67777776  8888888888888888887653 2233332211                  12234444


Q ss_pred             CCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCC
Q 009515          418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL  497 (533)
Q Consensus       418 ~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L  497 (533)
                      ..++....|..|+.+.|.+. .+|..+++|++|+.|.+..|++. .+|.++..-.|..||+|.|+++ .||..|.+|+.|
T Consensus       160 ~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~L  236 (722)
T KOG0532|consen  160 EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHL  236 (722)
T ss_pred             cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhhhhhhhh
Confidence            44455566788888888888 78888899999999999999988 8888887766888999999998 889999999999


Q ss_pred             CEEEeecccCcccCchhHHhccc
Q 009515          498 QLVLLNNNLLEGRVPEELYSIGV  520 (533)
Q Consensus       498 ~~L~L~~N~l~g~lP~~l~~l~~  520 (533)
                      ++|-|.+|.|. .-|..++...+
T Consensus       237 q~l~LenNPLq-SPPAqIC~kGk  258 (722)
T KOG0532|consen  237 QVLQLENNPLQ-SPPAQICEKGK  258 (722)
T ss_pred             eeeeeccCCCC-CChHHHHhccc
Confidence            99999999988 77877766443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.82  E-value=5.2e-09  Score=116.21  Aligned_cols=95  Identities=26%  Similarity=0.270  Sum_probs=67.9

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N  505 (533)
                      |+.|++++|.|+. +|..   +.+|+.|++++|+++ .+|...  ++|+.|++++|+|+ .+|...   .+|+.|+|++|
T Consensus       364 L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~--s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~N  432 (788)
T PRK15387        364 LYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP--SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRN  432 (788)
T ss_pred             cceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc--cCCCEEEccCCcCC-CCCcch---hhhhhhhhccC
Confidence            4445555555542 3332   246778888888887 455432  57888888888888 577543   46778899999


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          506 LLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++ .+|..++.+.. |+.|+|++|+|+
T Consensus       433 qLt-~LP~sl~~L~~-L~~LdLs~N~Ls  458 (788)
T PRK15387        433 QLT-RLPESLIHLSS-ETTVNLEGNPLS  458 (788)
T ss_pred             ccc-ccChHHhhccC-CCeEECCCCCCC
Confidence            998 89999888876 899999999875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.68  E-value=1e-08  Score=93.95  Aligned_cols=102  Identities=29%  Similarity=0.444  Sum_probs=37.4

Q ss_pred             EEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC-CCCcCCCEEE
Q 009515          425 VISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLVL  501 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~L~  501 (533)
                      .++.|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+.. ++|+.|++++|+++ .+.+.+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            47788888888873 3 3465 5778888888888888 554 4556 88888888888888 565444 3578888888


Q ss_pred             eecccCcccCc--hhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVP--EELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP--~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++|++. .+-  ..+..++. |+.|++.+|++|
T Consensus        95 L~~N~I~-~l~~l~~L~~l~~-L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKIS-DLNELEPLSSLPK-LRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT---EEE-TT-GGG
T ss_pred             CcCCcCC-ChHHhHHHHcCCC-cceeeccCCccc
Confidence            8888886 332  33556555 888888888875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.64  E-value=4.1e-08  Score=109.56  Aligned_cols=101  Identities=25%  Similarity=0.401  Sum_probs=81.5

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      ..|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. ++|+.|+|++|+|+ .+|..+.  ..|+.|+++
T Consensus       325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNALT-NLPENLP--AALQIMQAS  396 (754)
T ss_pred             ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence            358899999999985 676664  78999999999998 6776543 78999999999999 7887765  368999999


Q ss_pred             cccCcccCchhHHhcc---cCCcEEEccCCCCC
Q 009515          504 NNLLEGRVPEELYSIG---VHGGAFEYVKTPNC  533 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~---~~L~~L~ls~N~l~  533 (533)
                      +|+|+ .+|..+..+.   ..+..|++.+|+|+
T Consensus       397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            99999 7887665432   23789999999974

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.62  E-value=3.1e-08  Score=110.50  Aligned_cols=95  Identities=25%  Similarity=0.417  Sum_probs=55.6

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N  505 (533)
                      |+.|++++|.++. +|..+  .++|+.|++++|.++ .+|..+. ++|+.|+|++|+++ .+|..+.  ++|+.|+|++|
T Consensus       306 L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~-~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N  377 (754)
T PRK15370        306 ITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP-PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRN  377 (754)
T ss_pred             HHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc-CcccEEECCCCCCC-cCChhhc--CCcCEEECCCC
Confidence            4444455555542 33322  245666666666666 3554332 56777777777776 5665543  46777777777


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCCC
Q 009515          506 LLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+ .+|..+..   .|+.|++++|+|
T Consensus       378 ~Lt-~LP~~l~~---sL~~LdLs~N~L  400 (754)
T PRK15370        378 ALT-NLPENLPA---ALQIMQASRNNL  400 (754)
T ss_pred             cCC-CCCHhHHH---HHHHHhhccCCc
Confidence            777 66666543   266677777765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.52  E-value=1.7e-07  Score=104.34  Aligned_cols=54  Identities=22%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             EEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh
Q 009515          309 DILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE  377 (533)
Q Consensus       309 ~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~  377 (533)
                      .+++.++.++.++      .   ....+..+++++|+|+ .+|+.     ...++.+++..|.+..+|.
T Consensus       226 ~L~L~~N~Lt~LP------~---lp~~Lk~LdLs~N~Lt-sLP~l-----p~sL~~L~Ls~N~L~~Lp~  279 (788)
T PRK15387        226 TLVIPDNNLTSLP------A---LPPELRTLEVSGNQLT-SLPVL-----PPGLLELSIFSNPLTHLPA  279 (788)
T ss_pred             EEEccCCcCCCCC------C---CCCCCcEEEecCCccC-cccCc-----ccccceeeccCCchhhhhh
Confidence            4556666555432      1   1235778889999988 56542     2356666677776666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.46  E-value=4.6e-08  Score=97.44  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=74.5

Q ss_pred             hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhccc
Q 009515          442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV  520 (533)
Q Consensus       442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~  520 (533)
                      ..|..|++|+.|+|++|++++.-+.++.. .++++|.|..|++...--..|.++..|+.|+|.+|+++ .+-+..++-..
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~  346 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLF  346 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccc
Confidence            35889999999999999999666667777 99999999999998544456789999999999999999 55444444444


Q ss_pred             CCcEEEccCCCCC
Q 009515          521 HGGAFEYVKTPNC  533 (533)
Q Consensus       521 ~L~~L~ls~N~l~  533 (533)
                      .|.+|+|-.|+++
T Consensus       347 ~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  347 SLSTLNLLSNPFN  359 (498)
T ss_pred             eeeeeehccCccc
Confidence            4999999999875

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=1.7e-07  Score=70.55  Aligned_cols=59  Identities=27%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             CccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       472 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+.|++++|+++..-+..|.++++|++|++++|+++ .+|+. +..+.+ |+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~-L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPN-LRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTT-ESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCC-CCEEeCcCCcC
Confidence            4555555555555332334555555555555555555 33332 333333 55555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.39  E-value=2.6e-07  Score=69.47  Aligned_cols=58  Identities=38%  Similarity=0.570  Sum_probs=39.2

Q ss_pred             CCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccC
Q 009515          449 NLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL  507 (533)
Q Consensus       449 ~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l  507 (533)
                      +|+.|++++|+++ .+|+ .+.. ++|++|++++|+++...|..|.++++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5667777777776 4444 3444 7777777777777755556677777777777777764

...

>PLN03210 Resistant to P

Probab=98.33  E-value=1.4e-06  Score=103.20  Aligned_cols=101  Identities=22%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      +.|+.|+|++|...+.+|.++++|++|+.|++++|..-+.+|..+.-++|+.|+|++|.....+|..   ..+|+.|+|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            4688889999888888999999999999999998765557776652155666666655433344432   1345555555


Q ss_pred             cccCcccCchhHHhcccCCcEEEccC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVK  529 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~  529 (533)
                      +|.++ .+|..+..+.. |+.|++++
T Consensus       855 ~n~i~-~iP~si~~l~~-L~~L~L~~  878 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSN-LSFLDMNG  878 (1153)
T ss_pred             CCCCc-cChHHHhcCCC-CCEEECCC
Confidence            55555 45555554443 55555544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.27  E-value=1.5e-06  Score=103.02  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=17.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCC
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN  458 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N  458 (533)
                      .|+.|+|++|.....+|..++++++|+.|++++|
T Consensus       658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             cccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            4555555554444445555555555555555544

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.26  E-value=5.1e-07  Score=94.64  Aligned_cols=170  Identities=23%  Similarity=0.346  Sum_probs=99.9

Q ss_pred             eeEeecCCceEEEEecccchhhhhh-ccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          336 YVAKNLSSTELTVKLVPVVGAALIS-GLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       336 l~~l~l~~n~L~~~l~~~~~~~iLn-~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      +..+.+.++.++ .+++..+.  +. .++.+++..+.+.++|.++..+..++......+               .+..+.
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~--~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N---------------~l~~l~  179 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGL--LKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---------------DLSDLP  179 (394)
T ss_pred             eeEEecCCcccc-cCcccccc--chhhcccccccccchhhhhhhhhccccccccccCCc---------------hhhhhh
Confidence            455556666665 55555443  42 667777777777777655566666554322111               111110


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      -   ....+..|+.|++++|++. .+|..+..+..|+.|.+++|++. .++..+.. .++..+.+.+|++. .+|..++.
T Consensus       180 ~---~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         180 K---LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             h---hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence            0   0002234666777777776 56666666666777777777544 45555666 66667777777766 44666677


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++.|+.|++++|+++ .++. ++.+.. |+.|++++|.+
T Consensus       254 l~~l~~L~~s~n~i~-~i~~-~~~~~~-l~~L~~s~n~~  289 (394)
T COG4886         254 LSNLETLDLSNNQIS-SISS-LGSLTN-LRELDLSGNSL  289 (394)
T ss_pred             ccccceecccccccc-cccc-ccccCc-cCEEeccCccc
Confidence            777777777777777 5655 555444 77777777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.25  E-value=1.4e-07  Score=90.92  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             CcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC
Q 009515          410 WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP  488 (533)
Q Consensus       410 w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP  488 (533)
                      .+.+.|......-++.++.|++++|++. .+ ..+..|.+|+.||||+|.++ .+-.+-.+ .+++.|.|++|.+. .+ 
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-  367 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-  367 (490)
T ss_pred             ccchhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-
Confidence            3445554444444566777888888876 22 23777778888888888877 44433333 67777778877776 22 


Q ss_pred             ccCCCCcCCCEEEeecccCcccCc--hhHHhcccCCcEEEccCCCCC
Q 009515          489 DSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       489 ~~~~~l~~L~~L~L~~N~l~g~lP--~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +.+++|-+|..||+.+|++. ++-  ..+++++. |++|.|.+|+++
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPC-LE~l~L~~NPl~  412 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPC-LETLRLTGNPLA  412 (490)
T ss_pred             hhhHhhhhheeccccccchh-hHHHhcccccccH-HHHHhhcCCCcc
Confidence            24566777888888888876 332  34677777 788888888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.24  E-value=2.3e-07  Score=89.44  Aligned_cols=101  Identities=21%  Similarity=0.248  Sum_probs=86.3

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.+||++|.++ .+.++..-++.++.|++|.|.+. .+-. +.. .+|+.||||+|.|+ .+-.+-.+|-+.+.|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            4889999999998 78888999999999999999997 5443 777 99999999999999 666666678889999999


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|.++ .+ ..++++-+ |..||+++|++
T Consensus       361 ~N~iE-~L-SGL~KLYS-LvnLDl~~N~I  386 (490)
T KOG1259|consen  361 QNKIE-TL-SGLRKLYS-LVNLDLSSNQI  386 (490)
T ss_pred             hhhHh-hh-hhhHhhhh-heeccccccch
Confidence            99987 43 35777766 99999999986

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.18  E-value=1.7e-06  Score=87.61  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             EEEEEEeCCCCCcc----ccchhhhccCCCCEEEccCCCCCCCC----CCccCC-CCccEEEccCCccccCCCccCC---
Q 009515          425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGTL----PSGLGQ-QSLVRLDLSDNQFTGSIPDSLT---  492 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~i----P~~l~~-~~L~~L~Ls~N~l~g~iP~~~~---  492 (533)
                      .|+.|++++|.+++    .++..+..+++|+.|++++|.+++.-    ...+.. ++|+.|++++|++++.....+.   
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            48889999999884    24445666679999999999887442    333445 7899999999998853222222   


Q ss_pred             --CCcCCCEEEeecccCc----ccCchhHHhcccCCcEEEccCCCCC
Q 009515          493 --SSSKLQLVLLNNNLLE----GRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       493 --~l~~L~~L~L~~N~l~----g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                        ..+.|+.|++++|.++    +.+...+..+.. |+.|++++|.+.
T Consensus       246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~-L~~l~l~~N~l~  291 (319)
T cd00116         246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES-LLELDLRGNKFG  291 (319)
T ss_pred             hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC-ccEEECCCCCCc
Confidence              2478999999999986    334455555544 899999999863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.14  E-value=2.3e-06  Score=78.53  Aligned_cols=83  Identities=28%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             hhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHH-hccc
Q 009515          444 ISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY-SIGV  520 (533)
Q Consensus       444 l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~-~l~~  520 (533)
                      +.+...++.|+|.+|.++ .| +.++ . .+|+.|+|++|+++ .++ .+..|+.|+.|++++|+++ .+...+. .++.
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            456668899999999998 55 3566 3 89999999999999 665 5888999999999999999 7876664 4555


Q ss_pred             CCcEEEccCCCC
Q 009515          521 HGGAFEYVKTPN  532 (533)
Q Consensus       521 ~L~~L~ls~N~l  532 (533)
                       |+.|++++|++
T Consensus        90 -L~~L~L~~N~I  100 (175)
T PF14580_consen   90 -LQELYLSNNKI  100 (175)
T ss_dssp             ---EEE-TTS--
T ss_pred             -CCEEECcCCcC
Confidence             99999999986

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=2.5e-07  Score=79.46  Aligned_cols=85  Identities=22%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             EEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          426 ISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      |+.++|++|.+. .+|+.|. ..+.++.|+|++|.+. .+|.++.. +.|+.|+++.|.+. ..|.-+..|.+|..|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            444555555555 2333333 2234555555555554 55555444 55555555555555 444444445555555555


Q ss_pred             cccCcccCchh
Q 009515          504 NNLLEGRVPEE  514 (533)
Q Consensus       504 ~N~l~g~lP~~  514 (533)
                      +|... +||-.
T Consensus       132 ~na~~-eid~d  141 (177)
T KOG4579|consen  132 ENARA-EIDVD  141 (177)
T ss_pred             CCccc-cCcHH
Confidence            55554 44444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.07  E-value=1.5e-06  Score=88.01  Aligned_cols=108  Identities=23%  Similarity=0.316  Sum_probs=81.2

Q ss_pred             eEEEEEEeCCCCCcc----ccchhhhcc-CCCCEEEccCCCCCCCCCC----ccCC-CCccEEEccCCccccC----CCc
Q 009515          424 VVISQIDLGSQGLKG----YISDKISLL-SNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPD  489 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~iP~----~l~~-~~L~~L~Ls~N~l~g~----iP~  489 (533)
                      +.|+.|++++|.+.+    .+...+..+ ++|+.|++++|.+++....    .+.. .+|+.|++++|.+++.    ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            349999999999883    444566777 8999999999999854333    3334 6899999999999853    344


Q ss_pred             cCCCCcCCCEEEeecccCcccC----chhHHhcccCCcEEEccCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRV----PEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~l----P~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .+..+++|+.|+|++|.+++.-    +..+..+.. |+.|++++|++
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~-L~~L~ls~n~l  233 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKS-LEVLNLGDNNL  233 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC-CCEEecCCCcC
Confidence            5566779999999999987433    333444544 99999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.02  E-value=9.6e-07  Score=88.21  Aligned_cols=118  Identities=20%  Similarity=0.274  Sum_probs=88.7

Q ss_pred             cceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEE-ccCCcc
Q 009515          411 EGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD-LSDNQF  483 (533)
Q Consensus       411 ~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~-Ls~N~l  483 (533)
                      .-|.|......     -+...+.|+|..|+|+...+..|+.+++|+.||||+|+++-.-|+.+.. ++|..|- +++|++
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            44777655432     2345789999999999888889999999999999999999777777777 6665554 555999


Q ss_pred             ccCCCc-cCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCC
Q 009515          484 TGSIPD-SLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       484 ~g~iP~-~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~  531 (533)
                      + .+|. .|++|.+|+-|.+.-|++. .+++. +..+.. |..|.+-+|.
T Consensus       129 ~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~-l~lLslyDn~  175 (498)
T KOG4237|consen  129 T-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPS-LSLLSLYDNK  175 (498)
T ss_pred             h-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhh-cchhcccchh
Confidence            9 6664 6888888888888888888 55554 444443 7677776664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.01  E-value=1.8e-07  Score=99.57  Aligned_cols=106  Identities=24%  Similarity=0.276  Sum_probs=85.3

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L  500 (533)
                      -++.++.|+|++|++...  ..+..|+.|++|||+.|.|+ .+|..-.. -+|+.|.|.+|.++ .+ ..+.+|++|+.|
T Consensus       185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~L  259 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGL  259 (1096)
T ss_pred             HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhcc
Confidence            345689999999999843  37889999999999999998 77754333 66999999999998 43 357899999999


Q ss_pred             EeecccCcccCchh-HHhcccCCcEEEccCCCCC
Q 009515          501 LLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       501 ~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l~  533 (533)
                      ||+.|-+++.-.-. ++.+.. |+.|.|.+|++|
T Consensus       260 DlsyNll~~hseL~pLwsLs~-L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSS-LIVLWLEGNPLC  292 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHH-HHHHhhcCCccc
Confidence            99999988543322 455665 899999999987

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.95  E-value=2.7e-06  Score=89.17  Aligned_cols=151  Identities=26%  Similarity=0.373  Sum_probs=116.5

Q ss_pred             hccccccccCCCCCCChhHHHHHH-HHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc
Q 009515          360 SGLENYALVPNDLSTVPEQVIAMR-ALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG  438 (533)
Q Consensus       360 n~lEi~~l~~~~~~~~p~~~~~l~-~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g  438 (533)
                      ..++.+.+..+.+..+++....+. .++......+..               .-+   +.....++.|+.|+++.|++. 
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i---------------~~l---~~~~~~l~~L~~L~l~~N~l~-  176 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI---------------ESL---PSPLRNLPNLKNLDLSFNDLS-  176 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccch---------------hhh---hhhhhccccccccccCCchhh-
Confidence            456777888888888888777664 676543221100               000   012234567999999999999 


Q ss_pred             ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHh
Q 009515          439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS  517 (533)
Q Consensus       439 ~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~  517 (533)
                      .+|...+.++.|+.|++++|+++ .+|..+.. ..|+.|.+++|++. .++..+..+.++..|.+.+|++. .+|..+..
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence            67777778999999999999999 89988767 77999999999766 67778899999999999999998 66788888


Q ss_pred             cccCCcEEEccCCCCC
Q 009515          518 IGVHGGAFEYVKTPNC  533 (533)
Q Consensus       518 l~~~L~~L~ls~N~l~  533 (533)
                      +.. |+.|++++|+++
T Consensus       254 l~~-l~~L~~s~n~i~  268 (394)
T COG4886         254 LSN-LETLDLSNNQIS  268 (394)
T ss_pred             ccc-cceecccccccc
Confidence            776 999999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=1.4e-06  Score=75.04  Aligned_cols=102  Identities=23%  Similarity=0.343  Sum_probs=82.4

Q ss_pred             EEEEEeCCCCCccccchh---hhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515          426 ISQIDLGSQGLKGYISDK---ISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~---l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L  500 (533)
                      +..++|+++.+. .+++.   +.....|..++|++|.+. ..|+.+..  +.++.|+|++|+++ .+|+++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            455778887775 45554   444456677799999998 78888776  68999999999999 899999999999999


Q ss_pred             EeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +++.|.|. ..|.-+..+.+ |..|+..+|.+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~-l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIK-LDMLDSPENAR  135 (177)
T ss_pred             ccccCccc-cchHHHHHHHh-HHHhcCCCCcc
Confidence            99999999 78888888766 88888888864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.4e-05  Score=55.61  Aligned_cols=40  Identities=35%  Similarity=0.563  Sum_probs=28.5

Q ss_pred             CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCc
Q 009515          471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP  512 (533)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP  512 (533)
                      ++|++|++++|+++ .+|..+++|++|+.|++++|+++ .+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            35777777777777 67777788888888888888877 544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=9.8e-05  Score=51.36  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             cCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       495 ~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++|++|++++|+++ .+|+.++++.+ |+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~-L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPN-LETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTT-SSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCC-CCEEEecCCCCC
Confidence            47999999999999 89998999887 999999999974

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.41  E-value=9.6e-06  Score=86.78  Aligned_cols=100  Identities=25%  Similarity=0.314  Sum_probs=78.5

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      |...+.+.|.|. .+-.++.-++.|+.|+|++|+++ .+. .+.. ++|+.|||++|.|. .+|..-..-.+|+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            445566677776 56778889999999999999998 443 6666 99999999999999 7776432223499999999


Q ss_pred             ccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          505 NLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |.++ ++ ..+-++.. |..||++.|-|
T Consensus       242 N~l~-tL-~gie~Lks-L~~LDlsyNll  266 (1096)
T KOG1859|consen  242 NALT-TL-RGIENLKS-LYGLDLSYNLL  266 (1096)
T ss_pred             cHHH-hh-hhHHhhhh-hhccchhHhhh
Confidence            9998 44 34667665 99999999965

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.26  E-value=0.00014  Score=82.84  Aligned_cols=103  Identities=25%  Similarity=0.256  Sum_probs=77.9

Q ss_pred             EEEEEEeCCCC--CccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          425 VISQIDLGSQG--LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       425 ~L~~L~Ls~n~--l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      .|+.|-+..|.  +.-.....|..++.|+.||||+|.=-+.+|..++. -+|++|+|++..++ .+|..+++|++|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            46777777775  44333444677888888888888777788888888 88888888888888 8888888888888888


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVK  529 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~  529 (533)
                      +..+.....+|..+..+.+ |++|.+-.
T Consensus       625 l~~~~~l~~~~~i~~~L~~-Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQS-LRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhccc-ccEEEeec
Confidence            8887765456655555665 88887653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=6.5e-05  Score=76.32  Aligned_cols=108  Identities=18%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             ceeEEEEEEeCCCCCccc--cchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccC-CCccCCCCcC
Q 009515          422 TAVVISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS-IPDSLTSSSK  496 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~-iP~~~~~l~~  496 (533)
                      .++.++.|||+.|-+...  +-.-...|++|+.|+|+.|++.-.+......  ++|+.|.|+++.|+-. +-.....+++
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            345677888888877643  2344567788888888888886444444433  7777777777777632 1112334566


Q ss_pred             CCEEEeecccC--cccCchhHHhcccCCcEEEccCCCC
Q 009515          497 LQLVLLNNNLL--EGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       497 L~~L~L~~N~l--~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |+.|+|..|..  ....+..+.   +.|+.|||++|++
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~---~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKIL---QTLQELDLSNNNL  258 (505)
T ss_pred             HHHhhhhcccccceecchhhhh---hHHhhccccCCcc
Confidence            77777776631  112222221   2266677777664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.06  E-value=0.00023  Score=75.13  Aligned_cols=103  Identities=26%  Similarity=0.304  Sum_probs=79.3

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..+..|++..|+|.. +...+..+.+|++|++++|.++ .+. .+.. ..|+.|++++|.++ .+. .+..+..|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence            4568899999999984 4444788999999999999998 433 2344 77999999999999 554 456688999999


Q ss_pred             eecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      +++|++. .++.. +..+.. |+.+.+++|.+
T Consensus       169 l~~n~i~-~ie~~~~~~~~~-l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIV-DIENDELSELIS-LEELDLGGNSI  198 (414)
T ss_pred             CCcchhh-hhhhhhhhhccc-hHHHhccCCch
Confidence            9999998 55553 345555 78888888865

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.81  E-value=0.00087  Score=76.60  Aligned_cols=83  Identities=28%  Similarity=0.392  Sum_probs=74.9

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|||++|.--+.+|.+++.|-+|++|+++...+. .+|..+.. +.|.+|++..+.-...+|.-+..|++|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            456999999998877899999999999999999999999 99999999 9999999999887667777777899999999


Q ss_pred             eeccc
Q 009515          502 LNNNL  506 (533)
Q Consensus       502 L~~N~  506 (533)
                      +..-.
T Consensus       649 l~~s~  653 (889)
T KOG4658|consen  649 LPRSA  653 (889)
T ss_pred             eeccc
Confidence            88665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.79  E-value=0.00028  Score=74.54  Aligned_cols=100  Identities=23%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      +..+.++.|.+.. +-..+..+++|+.|++..|++. .+...+.. .+|++|+|++|+++ .+. .+..+..|+.|++.+
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheecc
Confidence            5556677777763 4455888999999999999998 55554666 99999999999999 443 467788899999999


Q ss_pred             ccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          505 NLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |.++ .++. +..+.. |+.+++++|.+
T Consensus       150 N~i~-~~~~-~~~l~~-L~~l~l~~n~i  174 (414)
T KOG0531|consen  150 NLIS-DISG-LESLKS-LKLLDLSYNRI  174 (414)
T ss_pred             Ccch-hccC-Cccchh-hhcccCCcchh
Confidence            9998 5543 333444 89999999976

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.53  E-value=0.0026  Score=58.77  Aligned_cols=99  Identities=26%  Similarity=0.365  Sum_probs=74.1

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCc--cCCCCcCCCEE
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV  500 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L  500 (533)
                      ....+||+.|.+..  -+.|..+..|..|.|.+|.++ .|-+.+..  ++|..|.|.+|.+. .+-+  -+..|++|+.|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            35678999998863  244677889999999999999 77777777  88999999999887 3322  35678899999


Q ss_pred             EeecccCcccCc----hhHHhcccCCcEEEccC
Q 009515          501 LLNNNLLEGRVP----EELYSIGVHGGAFEYVK  529 (533)
Q Consensus       501 ~L~~N~l~g~lP----~~l~~l~~~L~~L~ls~  529 (533)
                      .+-+|..+ ..+    -.+..++. |+.||+++
T Consensus       119 tll~Npv~-~k~~YR~yvl~klp~-l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVE-HKKNYRLYVLYKLPS-LRTLDFQK  149 (233)
T ss_pred             eecCCchh-cccCceeEEEEecCc-ceEeehhh
Confidence            99999886 332    12455555 88888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0004  Score=70.80  Aligned_cols=106  Identities=19%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             ceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC---CCccEEEccCCccccCCC--ccCCCCc
Q 009515          422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGSIP--DSLTSSS  495 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~---~~L~~L~Ls~N~l~g~iP--~~~~~l~  495 (533)
                      .++.++.|.|++++|+- .+-.-+..+++|+.|+|..|...  .-.....   ..|+.|||++|++. ..+  ...+.++
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~  271 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP  271 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence            34578999999999982 23344567899999999999632  2222222   78999999999998 666  3578899


Q ss_pred             CCCEEEeecccCcccC--chh-----HHhcccCCcEEEccCCCC
Q 009515          496 KLQLVLLNNNLLEGRV--PEE-----LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       496 ~L~~L~L~~N~l~g~l--P~~-----l~~l~~~L~~L~ls~N~l  532 (533)
                      .|..|+++.+.+. .+  |+.     .....+ |+.|+++.|++
T Consensus       272 ~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~k-L~~L~i~~N~I  313 (505)
T KOG3207|consen  272 GLNQLNLSSTGIA-SIAEPDVESLDKTHTFPK-LEYLNISENNI  313 (505)
T ss_pred             chhhhhccccCcc-hhcCCCccchhhhccccc-ceeeecccCcc
Confidence            9999999999886 33  333     233344 99999999987

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.89  E-value=0.012  Score=54.36  Aligned_cols=82  Identities=24%  Similarity=0.265  Sum_probs=62.6

Q ss_pred             CCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCc--hhHHhcccCCcE
Q 009515          448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGA  524 (533)
Q Consensus       448 ~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP--~~l~~l~~~L~~  524 (533)
                      .+...+||++|.+. .++ .+.. +.|.+|.|++|+++..-|.--.-+++|+.|.|.+|.+. ++-  ..+..+++ |+.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~-L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK-LEY  117 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCc-cce
Confidence            46788999999996 444 4555 99999999999999444443334678999999999987 332  22566776 999


Q ss_pred             EEccCCCCC
Q 009515          525 FEYVKTPNC  533 (533)
Q Consensus       525 L~ls~N~l~  533 (533)
                      |.+-+|+.|
T Consensus       118 Ltll~Npv~  126 (233)
T KOG1644|consen  118 LTLLGNPVE  126 (233)
T ss_pred             eeecCCchh
Confidence            999999864

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.81  E-value=0.0047  Score=61.51  Aligned_cols=184  Identities=15%  Similarity=0.144  Sum_probs=100.3

Q ss_pred             eeeEeecCCceEEEEecccchh--hhhhccccccccCCCCCCChhHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 009515          335 HYVAKNLSSTELTVKLVPVVGA--ALISGLENYALVPNDLSTVPEQV--IAMRALKESLRVPDRMGWNGDPCAPTNWDAW  410 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~--~iLn~lEi~~l~~~~~~~~p~~~--~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w  410 (533)
                      +++.++|++|.+--..++....  .-...+|-+.+.++.++-.-...  .||..+...-..+.       +      ...
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~-------~------~~L  159 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS-------K------PKL  159 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC-------C------cce
Confidence            6888899998665333333321  11445566666666554222111  23333321111111       0      133


Q ss_pred             cceeecCCCCC------------ceeEEEEEEeCCCCCcc----ccchhhhccCCCCEEEccCCCCCCCC----CCccCC
Q 009515          411 EGITCHPNKDE------------TAVVISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGTL----PSGLGQ  470 (533)
Q Consensus       411 ~gv~c~~~~~~------------~~~~L~~L~Ls~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~i----P~~l~~  470 (533)
                      .-+.|..+...            ..+.|..+.+..|.+.-    .+...+..+++|+.|||..|-++..-    -..+..
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s  239 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS  239 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence            44445433211            12357777777777652    23445677888888888888887332    223334


Q ss_pred             -CCccEEEccCCccccCCCccC-----CCCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515          471 -QSLVRLDLSDNQFTGSIPDSL-----TSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       471 -~~L~~L~Ls~N~l~g~iP~~~-----~~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                       ++|+.|+++++.++-.--..+     ...++|+.|.|.+|.++..    +-..+.. .+.|..|+|++|.+
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL  310 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence             678888888887764322111     2356788888888877621    1222333 33478888888876

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.021  Score=39.30  Aligned_cols=36  Identities=33%  Similarity=0.633  Sum_probs=24.0

Q ss_pred             hhHHHHHHHHHHhcCC-CC--CCCCCCC---CCCCCCCCCCcceeec
Q 009515          376 PEQVIAMRALKESLRV-PD--RMGWNGD---PCAPTNWDAWEGITCH  416 (533)
Q Consensus       376 p~~~~~l~~lk~~~~~-~~--~~~w~gd---pc~~~~~~~w~gv~c~  416 (533)
                      ++|..+|+++|+.+.. +.  ..+|+..   .|     |.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~-----C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP-----CSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C-----CCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCC-----eeeccEEeC
Confidence            5789999999999874 31  3589753   22     689999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.41  E-value=0.036  Score=57.53  Aligned_cols=50  Identities=16%  Similarity=0.269  Sum_probs=27.1

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCC-CCCCCCCCccCCCCccEEEccCCc
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGTLPSGLGQQSLVRLDLSDNQ  482 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~L~~L~Ls~N~  482 (533)
                      .|+.|.++++.--..+|..+  ..+|+.|++++| .+. .+|.     +|+.|+++.|.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-----sLe~L~L~~n~  123 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-----SVRSLEIKGSA  123 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-----ccceEEeCCCC
Confidence            46677776633223455444  246777777776 443 4443     35555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.25  E-value=0.031  Score=58.02  Aligned_cols=30  Identities=3%  Similarity=0.139  Sum_probs=20.0

Q ss_pred             eEEEEEEeCCC-CCccccchhhhccCCCCEEEccCCCC
Q 009515          424 VVISQIDLGSQ-GLKGYISDKISLLSNLVNLNLSTNSL  460 (533)
Q Consensus       424 ~~L~~L~Ls~n-~l~g~~p~~l~~L~~L~~L~Ls~N~l  460 (533)
                      ..|+.|.+++| .+. .+|+      +|+.|+++.+.+
T Consensus        94 ~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~  124 (426)
T PRK15386         94 EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSAT  124 (426)
T ss_pred             hhhhheEccCccccc-cccc------ccceEEeCCCCC
Confidence            46889999988 554 4554      466666766554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.98  E-value=0.011  Score=34.32  Aligned_cols=19  Identities=58%  Similarity=0.777  Sum_probs=8.9

Q ss_pred             ccEEEccCCccccCCCccCC
Q 009515          473 LVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       473 L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      |++|||++|+++ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444455555444 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.0082  Score=58.62  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             CCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCcc
Q 009515          409 AWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQF  483 (533)
Q Consensus       409 ~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l  483 (533)
                      .|+.+.|.-.   .+++|+.|+|+.|++...|...-..+.+|+.|-|.+..|...--.++-.  +.++.|++|.|.+
T Consensus        85 dWseI~~ile---~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   85 DWSEIGAILE---QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             cHHHHHHHHh---cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            5777777543   3566778888888877444322245667777777777776554444333  6677777777743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.37  E-value=0.018  Score=55.27  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCC--CCCCCCCCccCC-CCccEEEccCCccccCCCccC---CCCcCCCE
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL---TSSSKLQL  499 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N--~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~---~~l~~L~~  499 (533)
                      ++.|.+.+.+++.  -..+-.|++|+.|.+|.|  +..+.++.-... ++|++|+|++|++. . ++++   ..+.+|..
T Consensus        45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKS  120 (260)
T ss_pred             hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhh
Confidence            4455555555542  123556788999999999  666666655555 99999999999987 2 4443   45667888


Q ss_pred             EEeecccCcccC---chhHHhcccCCcEEE
Q 009515          500 VLLNNNLLEGRV---PEELYSIGVHGGAFE  526 (533)
Q Consensus       500 L~L~~N~l~g~l---P~~l~~l~~~L~~L~  526 (533)
                      |++.+|.-++ +   -..++.+..+|++||
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence            8998887663 3   123455554566665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.29  E-value=0.031  Score=55.87  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCccccchh----hhccCCCCEEEccCCCCC
Q 009515          426 ISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLG  461 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~----l~~L~~L~~L~Ls~N~l~  461 (533)
                      |+.|+||.|.+.-.-++.    +..++.|++|.|.+|.+.
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            566666666665332222    334455666666666553

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=94.13  E-value=0.059  Score=52.08  Aligned_cols=65  Identities=31%  Similarity=0.566  Sum_probs=51.1

Q ss_pred             hHHHHHHhhccCcceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEEC-Ce-ecccccccccCC
Q 009515          261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVG  327 (533)
Q Consensus       261 P~~V~~TA~~~~~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~in-g~-~l~~~di~~~~~  327 (533)
                      -...|||+|.-...+.|..+.+..++|-+.|-|||..  ....+..+|++.+| +. .+..+||+...|
T Consensus       107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg  173 (355)
T KOG3593|consen  107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVG  173 (355)
T ss_pred             hhhhhhhcccchhhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcC
Confidence            3468999996534466777777789999999999976  34567899999999 65 678888887665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.86  E-value=0.041  Score=52.95  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             hhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC--ccccCCCccCCCCcCCCEEEeecccCcccCchh---HHh
Q 009515          444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN--QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE---LYS  517 (533)
Q Consensus       444 l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N--~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~---l~~  517 (533)
                      .-.+..|+.|.+.+..++ ++- .+.. ++|+.|.+|.|  +.++.++.....+++|++|+|++|++.  ++..   +..
T Consensus        39 ~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhh
Confidence            344556667777777776 322 2334 89999999999  777777776777899999999999986  2333   344


Q ss_pred             cccCCcEEEccCCC
Q 009515          518 IGVHGGAFEYVKTP  531 (533)
Q Consensus       518 l~~~L~~L~ls~N~  531 (533)
                      +.. |..||+.+|.
T Consensus       115 l~n-L~~Ldl~n~~  127 (260)
T KOG2739|consen  115 LEN-LKSLDLFNCS  127 (260)
T ss_pred             hcc-hhhhhcccCC
Confidence            443 7788888774

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.80  E-value=0.0013  Score=61.80  Aligned_cols=84  Identities=23%  Similarity=0.264  Sum_probs=69.5

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ..+.+.||++.|++- .+...+..++.|..|+++.|.+. .+|..+.+ ..+..+++..|.++ ..|.++++++.++.++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            346888999998876 45667788888899999999887 78888888 88888888888888 7888899999999998


Q ss_pred             eecccCcc
Q 009515          502 LNNNLLEG  509 (533)
Q Consensus       502 L~~N~l~g  509 (533)
                      +-.|.|..
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            88888763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.75  E-value=0.11  Score=50.41  Aligned_cols=37  Identities=24%  Similarity=0.511  Sum_probs=22.3

Q ss_pred             EEEEEEeCCCCCccccchhhh----ccCCCCEEEccCCCCC
Q 009515          425 VISQIDLGSQGLKGYISDKIS----LLSNLVNLNLSTNSLG  461 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~----~L~~L~~L~Ls~N~l~  461 (533)
                      +|+.++|+.|.+....|+.++    .-+.|.+|.+++|.+.
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            466666777766655555433    3456667777766664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.65  E-value=0.024  Score=32.90  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.2

Q ss_pred             CCCEEEeecccCcccCchhHHh
Q 009515          496 KLQLVLLNNNLLEGRVPEELYS  517 (533)
Q Consensus       496 ~L~~L~L~~N~l~g~lP~~l~~  517 (533)
                      +|++|+|++|+++ .+|..+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            5899999999999 99988654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.43  E-value=0.025  Score=63.20  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=75.0

Q ss_pred             ceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCC
Q 009515          422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKL  497 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L  497 (533)
                      .++.|+.|.+++-.+.. ....-..++++|..||+|+.+++ .+ .++++ ++|+.|.+.+=.+. .-.  ..+.+|++|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKL  222 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCC
Confidence            46779999999988753 23444568899999999999997 44 56677 88998888776665 212  246689999


Q ss_pred             CEEEeecccCcccCc---hhH----HhcccCCcEEEccCCCC
Q 009515          498 QLVLLNNNLLEGRVP---EEL----YSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       498 ~~L~L~~N~l~g~lP---~~l----~~l~~~L~~L~ls~N~l  532 (533)
                      +.||++..+.. ..+   ...    ..++ .|+.||.|++.+
T Consensus       223 ~vLDIS~~~~~-~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi  262 (699)
T KOG3665|consen  223 RVLDISRDKNN-DDTKIIEQYLECGMVLP-ELRFLDCSGTDI  262 (699)
T ss_pred             Ceeeccccccc-cchHHHHHHHHhcccCc-cccEEecCCcch
Confidence            99999987765 233   111    1233 488999988754

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=92.99  E-value=0.06  Score=52.05  Aligned_cols=141  Identities=17%  Similarity=0.183  Sum_probs=83.8

Q ss_pred             hhhhhccCCCCccEEEccCCCCCCCCCCCceEeeCCC-ce--e--cCCcc-cccCCCCCCCCcCceeeecCCCCCCCcce
Q 009515           19 PLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDR-YY--T--SGATS-IVSEPLHFRFPHEKTLRYFPPSSGKKNCY   92 (533)
Q Consensus        19 ~~~~~~~~~~~~~~~IdCG~~~~~~d~~~~~w~~Dd~-~~--~--~g~~~-~~~~~~~~~~~~y~t~R~f~~~~~~~~cY   92 (533)
                      ..+.+|+-+...-+.|+||++. .+|..|+.|-.|-. .+  .  -|..- +.-....-....|+|.|+-..    .+.|
T Consensus        49 ~ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgy  123 (355)
T KOG3593|consen   49 RGAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGY  123 (355)
T ss_pred             ccCccccCchhhhheeccCChh-hhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcc
Confidence            3445555555444689999974 47788999988541 11  0  11111 110111122468999999754    3789


Q ss_pred             EeecCCCceEEEEEEeecCCCCCCCCCCceEEEEC-CEEEEeccCCCcccccCCceEEEEEEE-ecCCeEEEEEe
Q 009515           93 IIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGLARDGAYSDLFAF-VKDGELDLCFY  165 (533)
Q Consensus        93 ~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~-~~~~l~~~~~~~~~~~~~~~~~e~i~~-~~~~~l~v~~~  165 (533)
                      ..|++..|.|-+=+.|..--|+.- +.-.|||.++ ...+.+..+++...+....+.-|+|.. ...+.+.+|-.
T Consensus       124 d~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~ge  197 (355)
T KOG3593|consen  124 DVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGE  197 (355)
T ss_pred             cccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEee
Confidence            999988899988898932114432 2457999999 777777777765543222333344432 24445555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.97  E-value=0.071  Score=59.67  Aligned_cols=94  Identities=17%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCC-CCCCccCC-CCccEEEccCCccccCC--C----ccCCC
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSI--P----DSLTS  493 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~-~~L~~L~Ls~N~l~g~i--P----~~~~~  493 (533)
                      ..++|..||+++.+++..  .+++.|++|+.|.+-+=.+.- ..-..+.. ++|+.||+|..+.....  .    +.-..
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            346788899999888743  678888888888877766651 11124556 88999999887665221  1    12235


Q ss_pred             CcCCCEEEeecccCcccCchhHHh
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYS  517 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~  517 (533)
                      |+.|+.||.+++.+.+.+-+.+-.
T Consensus       249 LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             CccccEEecCCcchhHHHHHHHHH
Confidence            788999999988887666555433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.18  E-value=0.0054  Score=57.81  Aligned_cols=87  Identities=25%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhccc
Q 009515          442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV  520 (533)
Q Consensus       442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~  520 (533)
                      .++......+.||++.|++. .+-..+.. +.|+.|+++.|++. .+|..++++..++.+++.+|+++ ..|.+.+..+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34556667778888888876 44444555 77778888888877 77888888888888888888887 78888777765


Q ss_pred             CCcEEEccCCCC
Q 009515          521 HGGAFEYVKTPN  532 (533)
Q Consensus       521 ~L~~L~ls~N~l  532 (533)
                       ++.+++-+|+|
T Consensus       113 -~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 -PKKNEQKKTEF  123 (326)
T ss_pred             -cchhhhccCcc
Confidence             77888777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.60  E-value=0.044  Score=53.71  Aligned_cols=85  Identities=25%  Similarity=0.259  Sum_probs=64.8

Q ss_pred             eEEEEEEeCCCCCcc--ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCC-CccCCCCcCCCE
Q 009515          424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKLQL  499 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~  499 (533)
                      ..++.+||.+|.++.  .+..-+.+|+.|+.|+|+.|+|...|-..... .+|+.|-|.+..|.-.- -..+..+++++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            458889999999984  35556788999999999999998666544345 88999999888776432 234567788888


Q ss_pred             EEeecccCc
Q 009515          500 VLLNNNLLE  508 (533)
Q Consensus       500 L~L~~N~l~  508 (533)
                      |+++.|.+.
T Consensus       151 lHmS~N~~r  159 (418)
T KOG2982|consen  151 LHMSDNSLR  159 (418)
T ss_pred             hhhccchhh
Confidence            999888554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.85  E-value=0.13  Score=27.78  Aligned_cols=13  Identities=38%  Similarity=0.437  Sum_probs=4.7

Q ss_pred             CCCEEEeecccCc
Q 009515          496 KLQLVLLNNNLLE  508 (533)
Q Consensus       496 ~L~~L~L~~N~l~  508 (533)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.55  E-value=0.19  Score=30.20  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=16.9

Q ss_pred             CcCCCEEEeecccCcccCchhHHh
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYS  517 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~  517 (533)
                      |++|+.|+|++|+++ .+|...+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            456788888888888 77776553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.55  E-value=0.19  Score=30.20  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=16.9

Q ss_pred             CcCCCEEEeecccCcccCchhHHh
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYS  517 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~  517 (533)
                      |++|+.|+|++|+++ .+|...+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            456788888888888 77776553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.03  Score=54.30  Aligned_cols=64  Identities=27%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc--cCCCCcCCCEEEeecccCcccCc
Q 009515          446 LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVLLNNNLLEGRVP  512 (533)
Q Consensus       446 ~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L~L~~N~l~g~lP  512 (533)
                      .|+.|+.|.||-|+++ .+- .+.. ++|++|+|..|.+. .+-+  -+.++++|+.|+|..|.-.|.-+
T Consensus        39 kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             hcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            3444444555555444 111 1222 44555555555444 2222  23455555555555555554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.44  E-value=0.24  Score=26.75  Aligned_cols=12  Identities=50%  Similarity=0.609  Sum_probs=4.2

Q ss_pred             CCEEEccCCCCC
Q 009515          450 LVNLNLSTNSLG  461 (533)
Q Consensus       450 L~~L~Ls~N~l~  461 (533)
                      |+.|++++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.04  E-value=1.1  Score=38.31  Aligned_cols=98  Identities=12%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      |+.+.+.. .+...-...|.++++|+.+.+.++ +. .++.....  .+|+.+.+.+ .+...-...+..+++|+.+++.
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            66677764 566455566888888999998875 65 56655444  6899999876 4442333456678889999887


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKT  530 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N  530 (533)
                      .| +. .++...+.-.. |+.+.+..+
T Consensus        90 ~~-~~-~i~~~~f~~~~-l~~i~~~~~  113 (129)
T PF13306_consen   90 SN-IT-EIGSSSFSNCN-LKEINIPSN  113 (129)
T ss_dssp             TT--B-EEHTTTTTT-T---EEE-TTB
T ss_pred             cc-cc-EEchhhhcCCC-ceEEEECCC
Confidence            65 55 56666555443 777777643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.54  E-value=0.03  Score=54.87  Aligned_cols=84  Identities=27%  Similarity=0.307  Sum_probs=56.3

Q ss_pred             EEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC-ccccC-CCccCCCCcCCCEE
Q 009515          425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSSKLQLV  500 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~L  500 (533)
                      +|+.+||+...++. .+-.-+..+.+|+.|.|.+++|...|-..+.+ ..|+.|+|+.. .++.. .---+..|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47778888877763 23344667788888888888888777777777 88888888764 33311 00124466777777


Q ss_pred             EeecccCc
Q 009515          501 LLNNNLLE  508 (533)
Q Consensus       501 ~L~~N~l~  508 (533)
                      +|+.+.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            77777554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.12  E-value=0.59  Score=28.04  Aligned_cols=18  Identities=50%  Similarity=0.776  Sum_probs=10.1

Q ss_pred             CCCCEEEccCCCCCCCCCC
Q 009515          448 SNLVNLNLSTNSLGGTLPS  466 (533)
Q Consensus       448 ~~L~~L~Ls~N~l~g~iP~  466 (533)
                      ++|+.|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666665 4444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.12  E-value=0.59  Score=28.04  Aligned_cols=18  Identities=50%  Similarity=0.776  Sum_probs=10.1

Q ss_pred             CCCCEEEccCCCCCCCCCC
Q 009515          448 SNLVNLNLSTNSLGGTLPS  466 (533)
Q Consensus       448 ~~L~~L~Ls~N~l~g~iP~  466 (533)
                      ++|+.|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666665 4444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.33  E-value=0.054  Score=52.63  Aligned_cols=80  Identities=25%  Similarity=0.326  Sum_probs=59.6

Q ss_pred             cCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh--HHhcccCC
Q 009515          447 LSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHG  522 (533)
Q Consensus       447 L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~--l~~l~~~L  522 (533)
                      |.+.+.|++-++.|+ .|  ++..  +.|++|.||-|+++ ++ ..+..|++|++|.|..|.+. .+-+-  +.+++. |
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlps-L   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPS-L   90 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCch-h
Confidence            445566777777776 33  3444  89999999999999 33 24788999999999999998 44321  345555 9


Q ss_pred             cEEEccCCCCC
Q 009515          523 GAFEYVKTPNC  533 (533)
Q Consensus       523 ~~L~ls~N~l~  533 (533)
                      +.|-|..|+-|
T Consensus        91 r~LWL~ENPCc  101 (388)
T KOG2123|consen   91 RTLWLDENPCC  101 (388)
T ss_pred             hhHhhccCCcc
Confidence            99999999865

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.44  E-value=1.8  Score=42.22  Aligned_cols=66  Identities=30%  Similarity=0.513  Sum_probs=48.2

Q ss_pred             hhhhccCCCCEEEccCCCCCCCCCCccC----C-CCccEEEccCCccccCCC-ccCC-------------CCcCCCEEEe
Q 009515          442 DKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQFTGSIP-DSLT-------------SSSKLQLVLL  502 (533)
Q Consensus       442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~----~-~~L~~L~Ls~N~l~g~iP-~~~~-------------~l~~L~~L~L  502 (533)
                      +.+..++.|+..+||.|.+....|+.++    + ..|+.|.|++|.+- ++- .-++             .-+.|++...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            4567889999999999999888887654    4 78999999999886 222 1122             2346777777


Q ss_pred             ecccCc
Q 009515          503 NNNLLE  508 (533)
Q Consensus       503 ~~N~l~  508 (533)
                      ..|+|.
T Consensus       165 grNRle  170 (388)
T COG5238         165 GRNRLE  170 (388)
T ss_pred             ccchhc
Confidence            777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	533
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	1e-18
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.6 bits (231), Expect = 5e-21
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 35/162 (21%)

Query: 384 ALKESLRVPDRM-GWNGD-PCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY-- 439
            +K+ L  P  +  W     C    W    G+ C  +     V    +DL    L     
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTW---LGVLCDTDTQTYRVN--NLDLSGLNLPKPYP 67

Query: 440 -------------------------ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473
                                    I   I+ L+ L  L ++  ++ G +P  L Q ++L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           V LD S N  +G++P S++S   L  +  + N + G +P+  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 87.2 bits (217), Expect = 4e-19
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++ +DL    L+G  S       N   ++L+ NSL   L   +G  ++L  LDL +N+  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           G++P  LT    L  + ++ N L G +P+ 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 6e-19
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + +    + G I D +S +  LV L+ S N+L GTLP  +    +LV +    N+ +G+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 488 PDSLTSSSKLQLVL-LNNNLLEGRVPEEL 515
           PDS  S SKL   + ++ N L G++P   
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVN-LNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
             I      + G I D     S L   + +S N L G +P      +L  +DLS N   G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
                  S    Q + L  N L   + +
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.6 bits (192), Expect = 7e-16
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR-LDLSDNQFTG 485
            +D     L G +   IS L NLV +    N + G +P   G    L   + +S N+ TG
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
            IP +  ++  L  V L+ N+LEG       S
Sbjct: 189 KIPPTF-ANLNLAFVDLSRNMLEGDASVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + +    L G I    + L NL  ++LS N L G      G  ++  ++ L+ N     +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
              +  S  L  + L NN + G +P+ L
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
             +I L    L   +  K+ L  NL  L+L  N + GTLP GL Q + L  L++S N   
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
           G IP              NN  L G
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
           ++ +DL +  + G +   ++ L  L +LN+S N+L G +P G   Q       ++N+   
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 486 SIP 488
             P
Sbjct: 306 GSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 6e-20
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 376 PEQVIAMRALKESLRVPDRM-GWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLG 432
             ++  + + K+ L   + +  W+   +PC       ++G+TC  +K     V S IDL 
Sbjct: 11  YREIHQLISFKDVLPDKNLLPDWSSNKNPCT------FDGVTCRDDK-----VTS-IDLS 58

Query: 433 SQGLK---GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
           S+ L      +S  +  L+ L +L LS + + G++       SL  LDLS N  +G +  
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 490 --SLTSSSKLQLVLLNNNLLEGRVPEEL 515
             SL S S L+ + +++N L+       
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSG 146

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 6e-20
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           + ++ L + G  G I   +S  S LV+L+LS N L GT+PS LG    L  L L  N   
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           G IP  L     L+ ++L+ N L G +P  L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 9e-19
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  + L    L G I   +  LS L +L L  N L G +P  L   ++L  L L  N  T
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           G IP  L++ + L  + L+NN L G +P+ +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 1e-18
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485
             + L    L+G I  ++  +  L  L L  N L G +PSGL    +L  + LS+N+ TG
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            IP  +     L ++ L+NN   G +P EL
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 9e-18
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + L    L G I   +S  +NL  ++LS N L G +P  +G+ ++L  L LS+N F+G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           P  L     L  + LN NL  G +P  +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 426 ISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDN 481
           +  +DL      G + + ++ L ++L+ L+LS+N+  G +   L Q    +L  L L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            FTG IP +L++ S+L  + L+ N L G +P  L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           + +    + G +   +S   NL  L++S+N+    +P      +L  LD+S N+ +G   
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240

Query: 489 DSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            ++++ ++L+L+ +++N   G +P   
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  +D+    L GYI  +I  +  L  LNL  N + G++P  +G  + L  LDLS N+  
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
           G IP ++++ + L  + L+NN L G +PE
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 8e-17
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
            +  ++ S+   G+ S       +++ L++S N L G +P  +G    L  L+L  N  +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
           GSIPD +     L ++ L++N L+GR+P+ + ++
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +D+ S      I   +   S L +L++S N L G     +     L  L++S NQF G I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
           P        LQ + L  N   G +P+ L
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFL 289

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGS 486
           +++ S    G I      L +L  L+L+ N   G +P  L     +L  LDLS N F G+
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
           +P    S S L+ + L++N   G +P +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMD 337

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 4e-16
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 429 IDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           + L      G I D +S     L  L+LS N   G +P   G    L  L LS N F+G 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 487 IP-DSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518
           +P D+L     L+++ L+ N   G +PE L ++
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 6e-16
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGS 486
           +DL      G +       S L +L LS+N+  G LP   L + + L  LDLS N+F+G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 487 IPDSLTS-SSKLQLVLLNNNLLEGRVPEEL 515
           +P+SLT+ S+ L  + L++N   G +   L
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 429 IDLGSQGLKGYISDKISL---LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
           +DL +  + G       L      L +L +S N + G +       +L  LD+S N F+ 
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSSNNFST 214

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            IP  L   S LQ + ++ N L G     +
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAI 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-14
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494
            +G  S++++ LS     N+++   GG          S++ LD+S N  +G IP  + S 
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
             L ++ L +N + G +P+E+
Sbjct: 656 PYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 429 IDLGSQGLKGYISDKISL--LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFT 484
           +DL    L G ++   SL   S L  LN+S+N+L        G +  SL  LDLS N  +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 485 GSIPDSLT---SSSKLQLVLLNNNLLEGRVP 512
           G+            +L+ + ++ N + G V 
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 8e-13
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           + L +    G I  ++    +L+ L+L+TN   GT+P+ + +QS     ++ N   G   
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGKRY 575

Query: 489 DSLTSSSKLQLVLLNNNLLE--GRVPEELYSI 518
             + +    +      NLLE  G   E+L  +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 11/84 (13%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +LG   + G I D++  L  L  L+LS+N L G +P  +     L  +DLS+N  +G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 489 DS-----LTSSSKLQLVLLNNNLL 507
           +         +       LNN  L
Sbjct: 722 EMGQFETFPPAK-----FLNNPGL 740

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 82.7 bits (204), Expect = 1e-18
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 25/159 (15%)

Query: 220 DDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279
           D  G  ++ D         S                  N     LYQT   +  +  Y++
Sbjct: 19  DVHGIHYRKDPLEGRVGRASDYGM-------KLPILRSNPEDQVLYQTERYNEDSFGYDI 71

Query: 280 AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDIFNSVGSFAAYSWHYVA 338
            +  + +Y++   FAE+     ++ Q+VFD+ VN   V + +DIF+ VG   A+      
Sbjct: 72  PIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPI 129

Query: 339 KNLSSTELTVKLVPVVGA--------------ALISGLE 363
            ++   +L+V+                       +  L 
Sbjct: 130 -SIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALF 167

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 60.7 bits (147), Expect = 4e-11
 Identities = 29/158 (18%), Positives = 45/158 (28%), Gaps = 12/158 (7%)

Query: 32  YRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHE------KTLRYFPPS 85
           + ++ G   S  D     ++ D      G  S     L     +       +T RY   S
Sbjct: 8   WAVNAGG-ESHVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS 66

Query: 86  SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARD 145
            G    Y IP    G Y +      + Y  +S    FDV V G  V      +       
Sbjct: 67  FG----YDIPIKEEGEYVLV-LKFAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHST 121

Query: 146 GAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQID 183
                +   +K G+L +          +         D
Sbjct: 122 AHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 23/153 (15%)

Query: 380 IAMRALKESLRVPDRMGWNGDPC-APTNWD---------AWEGITCHPNKDETAVVISQI 429
           +A++ + ++L   +     G       NW+         A  G++ + N     V    +
Sbjct: 33  LALKEIWDALNGKN-WSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN---GRVT--GL 86

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFT 484
            L   G  G + D I  L+ L  L L ++          P G+    S  +       + 
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 485 GSIPDSLT--SSSKLQLVLLNNNLLEGRVPEEL 515
            +  D       S L    +N++  +  + +  
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 9/113 (7%), Positives = 32/113 (28%), Gaps = 23/113 (20%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           + +  + S   +  I     +      +   +N++   +   + +   L +  + ++ F 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 485 GSIPDSLTSSSKLQ--------------------LVLLNNNLLEGRVPEELYS 517
                    +   +                    + + N   L  ++P  L +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 444 ISLLSNLVNLNLSTNSLGG-------TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS 495
              +S +  ++ S N +G         L     +  ++  ++LS+NQ +    +  ++ S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 496 KLQLVLLNNNLLEGRVPEELYSI 518
            L  + L  N+L       L   
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDE 480

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSL---------GGTLPSGLGQQSLVRL 476
           ++ +++ +      +   +  L  +  +N++ N              L      + +  +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 477 DLSDNQF-TGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
            +  N   T  +  SL    KL ++    N LEG++P 
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-------TLPSGLGQ-QSLVRLDL 478
           S I+L +  +  +  +  S  S L ++NL  N L                    L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 479 SDNQFTGSIPDSLTSSS--KLQLVLLNNNLLEGRVPEEL 515
             N+ T  + D   +++   L  + L+ N      P + 
Sbjct: 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           +   +  +  L  L    N L G LP+  G    L  L+L+ NQ T    +    + +++
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 499 LVLLNNNLLEGRVPEEL 515
            +   +N L+  +P   
Sbjct: 381 NLSFAHNKLKY-IPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL------DLSDNQFTGSIPDSLTSSSKLQL 499
           L  LV ++LS NS     P+      +L         D   N+     P+ +T    L  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 500 VLLNNNLLEGRVPEELYS 517
           + + +N +   V E++  
Sbjct: 571 LQIGSNDIRK-VNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485
           +I          +        N+ ++NLS N +             L  ++L  N  T  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 486 ------SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                    ++  ++  L  + L  N L   + ++ 
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSS--KLQL 499
                 L +LNL+ N +   +P+      + +  L  + N+    IP+   + S   +  
Sbjct: 349 FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406

Query: 500 VLLNNNLLEGRVPEELYSI 518
           +  + N +     +    +
Sbjct: 407 IDFSYNEIGSVDGKNFDPL 425

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGS 486
           +Q D           + I+L  +L  L + +N +   +   +   ++  LD+ DN     
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITP-NISVLDIKDNPNISI 602

Query: 487 IPDSLTSSSKLQLVLLNNN 505
               +    +  + +L  +
Sbjct: 603 DLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 452 NLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLNNNLLEG 509
           N N   +  G      L     +  L L     +G +PD++   ++L+ L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 510 RVPEELYSIG 519
                   I 
Sbjct: 121 ERLFGPKGIS 130

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQQSLVRLDLSDNQFTG 485
           +DL   GL          L NL  L LS N +              SL +L+LS NQ   
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
             P    +  +L  + LNN  L   + E+L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           ++L    +    SD  S L +L  L+L  N +G  L      G +++  + LS N++   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 487 IPDSLTSSSKLQLVLLNNNLLEG 509
             +S      LQ ++L    L+ 
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 1/87 (1%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            L      G     +  LS+L  LNL +N               L  +DL  N       
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 489 DSLTSSSKLQLVLLNNNLLEGRVPEEL 515
               +   L+ + L  NL+     +  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494
           L        +  +NL  L+L +NS+     +   + ++L+ LDLS N  + +   +    
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 495 SKLQLVLLNNNLLEGRVPEELYS 517
             LQ +LL+NN ++    EEL  
Sbjct: 145 ENLQELLLSNNKIQALKSEELDI 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 429 IDLGSQGLKGYISDKISL---LSNLVNLNLSTNSLGGTLPS---GLGQQSLVRLDLSDNQ 482
           + L +  L   +++K+ L    +++ NL+LS + L  T  +   GL   +L  LDLS N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 483 FTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
                 DS     +L+   L  N ++      L+ 
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTG 485
           I L          +  +L+ +L  L L   +L    + PS     ++L  LDLS+N    
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 486 SIPDSLTSSSKLQLVLLNNNLLE 508
              D L    KL+++ L +N L 
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            L +N+  LNL+ N L     +   +   L  LD+  N  +   P+       L+++ L 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 504 NNLLEGRVPEEL 515
           +N L     +  
Sbjct: 82  HNELSQLSDKTF 93

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-----LPSGLGQQSLVRLDLSDNQF 483
           +++    + G  S+  + L NL  L+LS +              L    L  L+L+ N+ 
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512
           +    D+ +    L+++ L  N +   + 
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++++ L S  ++   ++      NL+ L+LS N L  T      Q ++L  L LS+N+  
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 485 GSIPDSLT--SSSKLQLVLLNNNLLEGRVPEELYSI 518
               + L   ++S L+ + L++N ++   P   ++I
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLL--SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ 482
           I  + L +  L    +     L  +NL  L+LS N+L             L    L  N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 483 FTGSIPDSLTSSSKLQLVLLNNNLLEG 509
                  SL     ++ + L  +  + 
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           I+ ++L    L+   +   +  S L +L++  N++    P    +   L  L+L  N+ +
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                +    + L  + L +N ++ 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           ++L S G      +    L  L  ++L  N+L     S      SL  L+L  N  T   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 488 PDSLTSS-SKLQLVLLNNNLLEG 509
                 +   L  + +  N  + 
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 429 IDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485
           +DLG   +   ++ +    L N+  + LS N       +      SL RL L        
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 486 -SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            S P        L ++ L+NN +     + L
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG----------LGQQSLVRLDL 478
             L    ++   S  +  L N+  LNL  +    ++                + L  L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 479 SDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR 510
            DN   G   +  T    L+ + L+N+    R
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 429 IDLGSQGLKGYISDKISLLSN--LVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485
           + L +  ++   S+++ + +N  L  L LS+N +    P        L  L L++ Q   
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 486 SIPDSLTSS---SKLQLVLLNNNLLEG 509
           S+ + L      + ++ + L+N+ L  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 10/100 (10%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG----------QQSLVR 475
           ++ +DL    L    +D  + L  L    L  N++       L           ++S  +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
             +S          S      L+ + + +N + G      
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT--------GSIPDSLTSSSKL 497
           L NL  L+LS N++       L   + L  LDL  N           G     L   S L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 498 QLVLLNNNLLEG 509
            ++ L +N  + 
Sbjct: 539 HILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFT 484
            ++  +    L          L  L +LN+  N + G   +   G  +L  L LS++  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 485 GSIPDSLT----SSSKLQLVLLNNNLLEGRVPEEL 515
                + T    + S L ++ L  N +     +  
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486
           IDLG   L    +   +   +L +LNL  N +        G   ++L  LD+  N F  +
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRV 511
                   + +     N   L    
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHY 649

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +DL    ++         LS+L  L L+ N +            SL +L   +       
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 488 PDSLTSSSKLQ-LVLLNNNLLEGRVPEEL 515
              +     L+ L + +N +   ++PE  
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 429 IDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           + +      + ++ D  + L NL  L+LS   L    P+      SL  L++S N F   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                   + LQ++  + N +     +EL
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
              +DL    L+   S        L  L+LS   +             L  L L+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                + +  S LQ ++     L       +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPI 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486
           +DL   G+   +S     L  L +L+   ++L       +    ++L+ LD+S      +
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                   S L+++ +  N  +     ++
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTS 493
           ++       S LS+L  L     +L       +G  ++L  L+++ N      +P+  ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 494 SSKLQLVLLNNNLLEGRVPEELYS 517
            + L+ + L++N ++     +L  
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRV 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSL-GGTLPSGLGQ-QSLVRLDLSDNQFTG 485
           ++      L    +  I  L  L  LN++ N +    LP       +L  LDLS N+   
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 486 SIPDSLTSSSKLQLVLLNNNL 506
                L    ++ L+ L+ +L
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDL 184

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +L  +  NL+LS N L             L  LDLS  +       +  S S L  ++L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 504 NNLLEGRVPEEL 515
            N ++       
Sbjct: 85  GNPIQSLALGAF 96

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 429 IDLGSQGL--KGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGS 486
           +DL   GL  KG  S      ++L  L+LS N +     + LG + L  LD   +     
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 487 IPDS-LTSSSKLQLVLLNNNLLEGRVPEEL 515
              S   S   L  + +++           
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLG-----QQSLVRLDLSDNQFTGSIPDSLTSS 494
           + +  S L+NL +L+LS+N +     + L          + LDLS N      P +    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KE 199

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            +L  + L NN     V +  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 429 IDLGSQGLKGYISDKISLLSNL----VNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT 484
           +DL S  ++      + +L  +    ++L+LS N +    P    +  L +L L +N  +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

Query: 485 GSIP-DSLTSSSKLQLVLLNNNLLEG 509
            ++    +   + L++  L       
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 436 LKGYISDKISLLSNLVNLNLSTNSL---GGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT 492
            KG  +     L +L  L+LS N L   G    S  G  SL  LDLS N     +  +  
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 493 SSSKLQLVLLNNNLLEGRVPEEL 515
              +L+ +   ++ L+      +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486
           +++         +     L++L  L+ S N +  +    L     SL  L+L+ N F  +
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 487 IP--DSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                 L      + +L+    +E   P + 
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           I D  + L+N+ + +L + ++   +           L+L + +F       L S  +L  
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 500 VLLNNNLL 507
                   
Sbjct: 333 TSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQ--FTGSIPDSLTSSSKLQLVLL 502
             L +L  L  ++N  G    S +   SL  LDLS N   F G    S   ++ L+ + L
Sbjct: 322 LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 503 NNNLLEG 509
           + N +  
Sbjct: 381 SFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
             + LN         +P  L   S   LDLS N        S  S  +LQ++ L+   ++
Sbjct: 13  QCMELNFYK------IPDNLPF-STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 509 GRVPEELYS 517
                   S
Sbjct: 66  TIEDGAYQS 74

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +L S  L     D+   LS+L ++ +    L   LP  + Q   L  L L+ N    ++P
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 489 DSLTSSSKLQ-LVLLNNNLLEGRVPEELYSI 518
            S+ S ++L+ L +     L   +PE L S 
Sbjct: 144 ASIASLNRLRELSIRACPELT-ELPEPLAST 173

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500
                 + L  L L   S   TLP  + +   L +LDL        +P  +       ++
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 501 LLNNNLLEGRVPEELYSIG 519
           L+  +L          +  
Sbjct: 307 LVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSSKLQ-LV 500
           I  L  L  L+L   +     P   G    L RL L D +    ++P  +   ++L+ L 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLD 283

Query: 501 LLNNNLLEGRVPEEL 515
           L     L  R+P  +
Sbjct: 284 LRGCVNLS-RLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-L 499
             I+ L NL +L +  + L   L   +     L  LDL       + P      + L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 500 VLLNNNLLEGRVPEEL 515
           +L + + L   +P ++
Sbjct: 259 ILKDCSNLL-TLPLDI 273

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + + + GL   + D +   + L  L L+ N L   LP+ +     L  L +        +
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTEL 166

Query: 488 PDSLTSSS---------KLQLVLLNNNLLEGRVPEEL 515
           P+ L S+           LQ + L    +   +P  +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ----------QSLVRLDLSDNQFTGSIPDSLTS 493
           I+ L+ L  L++        LP  L             +L  L L       S+P S+ +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 494 SSKLQLVLLNNNLLEGRVPEEL 515
              L+ + + N+ L   +   +
Sbjct: 205 LQNLKSLKIRNSPLSA-LGPAI 225

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 442 DKISLLSNLVNLNLSTNSLGG--TLPSGLGQ---QSLVRLDLSDNQFTGSIPDSLTSSSK 496
                 +N  N  + T +          L        V L+L         PD     S 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105

Query: 497 LQLVLLNNNLLEGRVPEEL 515
           LQ + ++   L   +P+ +
Sbjct: 106 LQHMTIDAAGLM-ELPDTM 123

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485
             +              S L +L ++ L        LP  L     L  L+++ N+    
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 486 --------SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                    + D   +  K+Q+  +  N LE   P   
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASA 567

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 440 ISDKISL--LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDL------SDNQFTGSIPDS 490
           +SD      L  L N+++S N    + P+       L    +        N+     P  
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 491 LTSSSKLQLVLLNNNLLEGRVPEEL 515
           +T+   L  + + +N +   V E+L
Sbjct: 802 ITTCPSLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 22/162 (13%)

Query: 366 ALVPNDLSTVPEQVIAMRALKESLRVPDRMGW--NGDPC----APTNW------DAWEGI 413
           A VP  L    E +   +ALK      D   W              NW      D W   
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQ 314

Query: 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSL--------GGTLP 465
                 +   V    + L   G KG + D I  L+ L  L+  T+S            L 
Sbjct: 315 PGVDLDNNGRVT--GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 466 SGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 507
             + ++   R+ +   +        L  S  LQ  +  N  +
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGG------TLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
              +  + +++ S N +G                +   + LS N+      +   + S +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 498 QLVLLNNNLLEGRVPEELYS 517
             ++L+NNL+   +PE    
Sbjct: 700 STIILSNNLMT-SIPENSLK 718

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG---------TLPSGLGQ-QSLVRLD 477
            ++L +      + D +  L  L +LN++ N              L         +    
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 478 LSDNQFTGSIPDS--LTSSSKLQLVLLNNNLLE 508
           +  N      P S  L    KL L+   +N + 
Sbjct: 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQL 499
                 L +L L  N +   +P         +  L  S N+    IP+  +  S   +  
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 500 VLLNNNLLEGRVPEELYSIG 519
           V  + N +         S+ 
Sbjct: 649 VDFSYNKIGSEGRNISCSMD 668

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSL-TSSSKLQ 498
            S  +  +  L  L+   N +   L +      L  L L  NQ    IP+     + +++
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 499 LVLLNNNLLEGRVPEEL 515
            +  ++N L+  +P   
Sbjct: 623 GLGFSHNKLKY-IPNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-------GTLPSGLGQ-QSLVRLD 477
            S + L    ++ + ++  +  S +  + LS N +                    L  +D
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 478 LSDNQFTGSIPDSLTSS--SKLQLVLLNNNLLEGRVPEEL 515
           L  N+ T S+ D   ++    L  + ++ N      P + 
Sbjct: 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 21/102 (20%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-------------------TLPSGL 468
           QI   +  +   IS  I  L+ L  +  + +                             
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 469 GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
              + L  ++L +      +PD L    +LQ + +  N    
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 2/84 (2%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQS-LVRLDLSDNQFTG 485
             +D  +        +      N  N N   +  G      L     +  L L+     G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEG 509
            +PD++   ++L+++    +    
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETV 361

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT-G 485
            Q D     +       I+   +L+ L + +N +   +   L    L  LD++DN     
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTP-QLYILDIADNPNISI 842

Query: 486 SIPDSLTSSSKLQLVLLNNNL 506
            +            VLL +  
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKT 863

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 68/493 (13%), Positives = 127/493 (25%), Gaps = 178/493 (36%)

Query: 148 YSDLF-----AFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYG 202
           Y D+      AFV +   D C         +++  E+  I         I +   +    
Sbjct: 18  YKDILSVFEDAFVDN--FD-CKDVQDMPKSILSKEEIDHI---------IMSKDAVSGTL 65

Query: 203 RL-----TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKS--VTTRERITNTNQ 255
           RL     +         F  +       +            S +    +  R+R+ N NQ
Sbjct: 66  RLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 256 P-PNYY-----PMKLYQTAI----VSSGAIQYN--------LAVDAKLDYLI-------- 289
               Y      P    + A+     +   +           +A+D  L Y +        
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 290 -WFHFAEIDSS-------------------------------------------VTKAGQ 305
            W +    +S                                             +K  +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 306 RVFDIL--VNDKNVTRVDIFN------------SVGSFAAYSWHYVAKNLSSTELTVKLV 351
               +L  V +      + FN             V  F + +      ++S    ++ L 
Sbjct: 245 NCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAA---TTTHISLDHHSMTLT 299

Query: 352 PVVGAALISGLENYALVP-NDLSTVPEQ-------VIAMRALKESLRV-PDRMGWNGDPC 402
           P    +L   L  Y      DL   P +        +++  + ES+R             
Sbjct: 300 PDEVKSL---LLKYLDCRPQDL---PREVLTTNPRRLSI--IAESIRDGLAT-------- 343

Query: 403 APTNWDAWEGITCHPNKDETAVVISQ-ID-LGSQGLKGYISDKISLLSNLVNLNLSTNSL 460
               WD W+    H N D+   +I   ++ L     +    D++S+     +        
Sbjct: 344 ----WDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAH-------- 386

Query: 461 GGTLPSGLGQQSLVRL-DLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519
              +P+ L    L  +           + + L   S          L+E +  E   SI 
Sbjct: 387 ---IPTIL----LSLIWFDVIKSDVMVVVNKLHKYS----------LVEKQPKESTISI- 428

Query: 520 VHGGAFEYVKTPN 532
                 E      
Sbjct: 429 -PSIYLELKVKLE 440

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 74/549 (13%), Positives = 153/549 (27%), Gaps = 174/549 (31%)

Query: 17  VLPLSLASSYPYKA--SYRI------DCGSATSTTDPFNTTWQADDRYYTSGATSIVSEP 68
            + L +  SY  +    ++I      +C S  +  +         D  +TS +    +  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 69  LHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDN-YDGKSHSPSFDVSVE 127
           L       + LR    S   +NC ++  L              N  +      +F++S +
Sbjct: 225 LRIHSIQAE-LRRLLKSKPYENCLLV--L-------------LNVQN-AKAWNAFNLSCK 267

Query: 128 GTLVFSWRSPWPEGLARDGAYSD---------------LFAFVKDGELDLCFYSFATDPP 172
             L+ +          R    +D                     D    L    +    P
Sbjct: 268 -ILLTT----------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRP 315

Query: 173 VIASL--EVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA 230
               L  EV   +P     + I           +  G   W         D  +    D 
Sbjct: 316 --QDLPREVLTTNPRR--LSIIAE--------SIRDGLATW---------DNWKHVNCDK 354

Query: 231 ASRSPNAKSSIKSVTT---RER-----I--TNTNQPPN-----YYPMKLYQTAIVSSGAI 275
            +     +SS+  +     R+      +   + + P       ++ +      +V +   
Sbjct: 355 LTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 276 QYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVF-DILVNDKNVTRVDIFNSVGSFAA--Y 332
           +Y+L      +  I      ++  V    +      +V+  N+ +    + +       Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPN---DLSTVPEQVIAMRALKESL 389
            + ++  +L + E                 E   L      D           R L++ +
Sbjct: 473 FYSHIGHHLKNIEHP---------------ERMTLFRMVFLDF----------RFLEQKI 507

Query: 390 RVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSN 449
           R              T W+A   I      +     + Q+       K YI D       
Sbjct: 508 RHDS-----------TAWNASGSIL-----N----TLQQLKF----YKPYICDNDPKYER 543

Query: 450 LVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
           LV      N++   LP    +++L+    +D      +         L++ L+  +    
Sbjct: 544 LV------NAILDFLPK--IEENLICSKYTD------L---------LRIALMAED---E 577

Query: 510 RVPEELYSI 518
            + EE +  
Sbjct: 578 AIFEEAHKQ 586

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            +    L +LNL  N +   +   +    L  LDLS N+    +     S++ +  + L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 504 NNLLEGRVPEEL 515
           NN L   + + L
Sbjct: 223 NNKLV-LIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
            + L  L+LS+N L   +         +  + L +N+    I  +L  S  L+   L  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 506 LLEGRVPEELYS 517
                   + +S
Sbjct: 248 GFHCGTLRDFFS 259

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           I +     +      ++ +SL     + L Q   ++  LDLS N  +      L   +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 498 QLVLLNNNLL 507
           +L+ L++N+L
Sbjct: 61  ELLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           + +  ++  L+ + N++   +    GQ     + L++N+ T          S++Q + L 
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 504 NNLLE 508
            N ++
Sbjct: 153 LNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT-GSIPDSLTSSSK 496
           ++  +    + +  ++L  N L   +   L   Q+L   DL  N F  G++ D  + + +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 497 LQLVLLNNN 505
           +Q V     
Sbjct: 264 VQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
           DL    L    +  ++  + L  LNLS+N L           +L  LDL++N        
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQ----- 93

Query: 490 SLTSSSKLQLVLLNNNLLEGRVPEEL 515
            L     ++ +   NN +  RV    
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            +    LK  ++       N+  L+LS N L     + L     L  L+LS N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL 74

Query: 489 DSLTSSSKLQLVLLNNNLLE 508
           D L S S L+ + LNNN ++
Sbjct: 75  D-LESLSTLRTLDLNNNYVQ 93

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           K  L++    L L+  +L  +LP  L  Q +  L+++ N    S+P+   S   L+ +  
Sbjct: 54  KECLINQFSELQLNRLNL-SSLPDNLPPQ-ITVLEITQNALI-SLPELPAS---LEYLDA 107

Query: 503 NNNLLEGRVPEEL 515
            +N L   +PE  
Sbjct: 108 CDNRLS-TLPELP 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-----QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
            L  +L  L++STN L  +LP+   +     ++ +     +N+ T  IP+++ S      
Sbjct: 177 ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 500 VLLNNNLLEGRVPEEL 515
           ++L +N L  R+ E L
Sbjct: 235 IILEDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L ++L  L+   N L  TLP      SL  LD+ +NQ T  +P+       L+ +  +N
Sbjct: 97  ELPASLEYLDACDNRLS-TLPELPA--SLKHLDVDNNQLT-MLPELPAL---LEYINADN 149

Query: 505 NLLEGRVPEEL 515
           N L   +PE  
Sbjct: 150 NQLT-MLPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L + L  +N   N L   LP      SL  L + +NQ T  +P+   S   L+ + ++ 
Sbjct: 137 ELPALLEYINADNNQLT-MLPELPT--SLEVLSVRNNQLT-FLPELPES---LEALDVST 189

Query: 505 NLLEGRVPEEL 515
           NLLE  +P   
Sbjct: 190 NLLE-SLPAVP 199

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 8/70 (11%), Positives = 17/70 (24%), Gaps = 2/70 (2%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
                      +      N +   +P  +        + L DN  +  I +SL+  +   
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

Query: 499 LVLLNNNLLE 508
                     
Sbjct: 258 DYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGG--TLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501
            S         L   +     +L           L L+    + S+PD+L     + ++ 
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPPQ--ITVLE 86

Query: 502 LNNNLLEGRVPEEL 515
           +  N L   +PE  
Sbjct: 87  ITQNALI-SLPELP 99

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            +    L +LNL  N +   +   +    L  LDLS N+    +     S++ +  + L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 504 NNLLEGRVPEEL 515
           NN L   + + L
Sbjct: 223 NNKLV-LIEKAL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            + + L  L+LS+N L   +         +  + L +N+    I  +L  S  L+   L 
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 504 NNLLEGRVPEELYS 517
            N        + +S
Sbjct: 246 GNGFHCGTLRDFFS 259

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           I +     +      ++ +SL     + L Q   ++  LDLS N  +      L   +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 498 QLVLLNNNLLEG 509
           +L+ L++N+L  
Sbjct: 61  ELLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           + +  ++  L+ + N++   +    GQ     + L++N+ T          S++Q + L 
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 504 NNLLE 508
            N ++
Sbjct: 153 LNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF-TGSIPDSLTSSSK 496
           ++  +    + +  ++L  N L   +   L   Q+L   DL  N F  G++ D  + + +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 497 LQLVLLNNN 505
           +Q V     
Sbjct: 264 VQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSI 487
           ++DL    L    +  ++  + L  LNLS+N L           +L  LDL++N      
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYVQ--- 93

Query: 488 PDSLTSSSKLQLVLLNNNLLE 508
              L     ++ +   NN + 
Sbjct: 94  --ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            +    LK  ++       N+  L+LS N L     + L     L  L+LS N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL 74

Query: 489 DSLTSSSKLQLVLLNNNLLE 508
           D L S S L+ + LNNN ++
Sbjct: 75  D-LESLSTLRTLDLNNNYVQ 93

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L S L  L +S N L  +LP       L+ L +  NQ T  +P+SL   S    V L  
Sbjct: 238 VLPSELKELMVSGNRLT-SLPMLPSG--LLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 505 NLLE 508
           N L 
Sbjct: 294 NPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L S L  L++S N L  +LP+   +  L +L   +N+ T S+P   +    L+ ++++ 
Sbjct: 178 MLPSGLQELSVSDNQL-ASLPTLPSE--LYKLWAYNNRLT-SLPALPSG---LKELIVSG 230

Query: 505 NLLEGRVPEEL 515
           N L   +P   
Sbjct: 231 NRLT-SLPVLP 240

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 407 WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS 466
           W AW            A V+ ++             +  L +    LN+  + L  TLP 
Sbjct: 12  WSAWRRAAPAEESRGRAAVVQKM-------------RACLNNGNAVLNVGESGL-TTLPD 57

Query: 467 GLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            L    +  L + DN  T S+P       +L+ + ++ N L   +P   
Sbjct: 58  CLPAH-ITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLP 100

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 36/159 (22%)

Query: 357 ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCH 416
           AL   L    +  N L+++P     +  L               P  P+       +   
Sbjct: 78  ALPPELRTLEVSGNQLTSLPVLPPGLLELSIF-----SNPLTHLPALPSG---LCKLWIF 129

Query: 417 PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRL 476
            N+      ++ +                L   L  L++S N L  +LP+   +  L +L
Sbjct: 130 GNQ------LTSLP--------------VLPPGLQELSVSDNQL-ASLPALPSE--LCKL 166

Query: 477 DLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
              +NQ T S+P   +    LQ + +++N L   +P   
Sbjct: 167 WAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            L S L++L++  N L   LP  L    S   ++L  N  +                   
Sbjct: 258 MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSG 315

Query: 504 NNLLEGRVPEEL 515
             +         
Sbjct: 316 PIIRFDMAGASA 327

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           +DL    L+         L  L  LN+S N+L   L S       SL  LD S N+   S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 487 IPDSLTSSSKLQLVLLNNNLL 507
                     L    L NN +
Sbjct: 537 KGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           +D+     K         L++L  L ++ NS      S +     +L  LDLS  Q    
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
                 +  +LQL+ +++N L   +    Y+
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLF-LDSSHYN 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           +DL    ++         L +L NL L+ N +    P       SL  L   + +     
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 488 PDSLTSSSKLQLVLLNNNLLEG 509
              +     L+ + + +N +  
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           +S     L  L +L+   ++L            + L+ LD+S               + L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 498 QLVLLNNNLLEGRVPEEL 515
             + +  N  +      +
Sbjct: 451 NTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 430 DLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
            +     K      + +  +NL  L+LS   L             L  L++S N      
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 488 PDSLTSSSKLQLVLLNNNLLEG 509
                    L  +  + N +E 
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            S L  L+LS   +   +      G   L  L L+ N      P S +  + L+ ++   
Sbjct: 55  FSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 505 NLLEG 509
             L  
Sbjct: 114 TKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQLVLLNN 504
           L++L NL      L       +GQ  +L +L+++ N      +P   ++ + L  V L+ 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 505 NLLEG 509
           N ++ 
Sbjct: 163 NYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTG 485
            +      L    S  I  L  L  LN++ N +    LP+      +LV +DLS N    
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 486 SIPDSLTSSSKLQLVLLNNNL 506
              + L    +   V L+ ++
Sbjct: 168 ITVNDLQFLRENPQVNLSLDM 188

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT--SSSKLQLVLLNN 504
           L  L +L L+ N         +   SL  LDLS N  + S   S +   ++ L+ + L+ 
Sbjct: 327 LPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 505 NLLE 508
           N   
Sbjct: 386 NGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLNNN 505
            ++L +L+LS N       + +G + L  LD   +        S   S  KL  + ++  
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 506 LLEGRVPEEL 515
             +       
Sbjct: 435 NTKIDFDGIF 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLG-----QQSLVRLDLSDNQFTGSIPDSLTSS 494
           +    S L+NLV+++LS N +     + L       Q  + LD+S N     I D     
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            KL  + L  N     + +  
Sbjct: 204 IKLHELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS-SKLQLVLLN 503
                 ++L++S N +            L  L L  N  + +I  +   + + L +  L 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 504 NNLLEG 509
               + 
Sbjct: 238 LGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 437 KGYISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQQSLVRLDLSDNQFTGSIPDSLTS 493
           KG IS K   L +L  L+LS N+L  +     S LG  SL  LDLS N     +  +   
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 494 SSKLQLVLLNNNLLEG 509
             +LQ +   ++ L+ 
Sbjct: 398 LEELQHLDFQHSTLKR 413

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 441 SDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500
             K   L+N+  ++L+  S+   L           L +   Q        L     L+ +
Sbjct: 278 IVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSL 333

Query: 501 LLNNNLLE 508
            L  N   
Sbjct: 334 TLTMNKGS 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
            L    L        + L  + +++LS N L  +    L     + L+L+ N  +  +P 
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541

Query: 490 SLTSSSKLQLVLLNNNLLEG 509
            L   S+ + + L  N L+ 
Sbjct: 542 LLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ----QSLVRLDLSDNQFT 484
           ++L    L          L  L +LNL  N                  L  L LS    +
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                + TS   +  V L++N L  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           +  I+L         S+     S L  L+L+   L   LPSGL    +L +L LS N+F 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEE 514
                S ++   L  + +  N     +   
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTG 485
            ++L         ++       L  L+L+   L              L  L+LS +    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519
           S          LQ + L  N       ++  S+ 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
              L +L      +       L   ++L  L L  N  +         + KL+++   NN
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 506 LLEGRVPEEL 515
            +     E++
Sbjct: 164 AIHYLSKEDM 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISL--LSNLVNLNLSTNSL---GGTLPSG 467
           I         + V   ++ G       I   +    + +L                +  G
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 468 LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY 516
           L + S+  ++L  + F     ++    S LQ + L    L   +P  L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +L ++   L  S N L     +   +  +L  LDL+  Q      D+  S  +L  ++L 
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 504 NNLLEG 509
            N L  
Sbjct: 90  ANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFT 484
              ++     L    +   S L NL  L+L+   +          Q  L  L L+ N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                +L+    L+ +      +  
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQQSLVRLDLSDNQFTG 485
           + LGS  +      K      L  L+   N++        S L Q + + L+L+ N    
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA- 192

Query: 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            I      S+  Q +          + + L
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQQSLVRLDLSDNQFTGSIP 488
                G+       +     L +L L +N +    LP G   + L  LD  +N       
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 489 DSLTSSSKLQLVLL--NNNLLEG 509
           + ++S  +   + L  N N + G
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL---GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           L NL  L+LS + +  +    L       L  L+LS N+      ++     +L+L+ L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 504 NNLLEGRVPEELYS 517
              L+ +  +  + 
Sbjct: 409 FTRLKVKDAQSPFQ 422

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 2/57 (3%)

Query: 453 LNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
            N     L   +P  L   S   L+ S N        + +    L  + L    +  
Sbjct: 17  YNCENLGLN-EIPGTLPN-STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           I     L  +L  LN+S N L   LP+      L RL  S N     +P+   +   L+ 
Sbjct: 309 IRSLCDLPPSLEELNVSNNKL-IELPALPP--RLERLIASFNHLA-EVPELPQN---LKQ 361

Query: 500 VLLNNNLLEGRVPEELYSI 518
           + +  N L    P+   S+
Sbjct: 362 LHVEYNPLR-EFPDIPESV 379

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +   S L  +++  NSL   LP      SL  +   +NQ    +P+ L +   L  +  +
Sbjct: 149 LQNSSFLKIIDVDNNSL-KKLPDLPP--SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYAD 203

Query: 504 NNLLEGRVPEELYS 517
           NN L+ ++P+   S
Sbjct: 204 NNSLK-KLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L  NL  LN S+N +  +L       SL  L++S+N+    +P       +L+ ++ + 
Sbjct: 294 ELPPNLYYLNASSNEI-RSLCDLPP--SLEELNVSNNKLI-ELPALPP---RLERLIASF 346

Query: 505 NLLEGRVPEEL 515
           N L   VPE  
Sbjct: 347 NHLA-EVPELP 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L  NL  L++ TN L    P      S+  L ++  +       +  ++ KL+  +  +
Sbjct: 393 ELPQNLKQLHVETNPLR-EFPDIPE--SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 505 NLL 507
           +  
Sbjct: 450 HHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L   L  L +S N L   LP       L  +D+ +N     +PD   S   L+ +   N
Sbjct: 128 DLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGN 182

Query: 505 NLLE 508
           N LE
Sbjct: 183 NQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +  L  L  +    NSL   LP      SL  +   +N         L +   L  +  +
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPL--SLESIVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 504 NNLLEGRVPEEL 515
           NNLL+  +P+  
Sbjct: 246 NNLLK-TLPDLP 256

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 21/93 (22%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--------------QSLVRLDLSDNQFTG 485
           +  +   + +      + +      P G G+              +    L+L++   + 
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84

Query: 486 SIPDSLTSSSKLQ-LVLLNNNLLEGRVPEELYS 517
           S+P+       L+ LV   N+L E  +PE   S
Sbjct: 85  SLPELPPH---LESLVASCNSLTE--LPELPQS 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +  L      L L+   L  +LP       L  L  S N  T  +P+   S   L +   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 503 NNNLLEGRVPEELYSIGVHG 522
           N   L   +P  L  +GV  
Sbjct: 122 NLKALSD-LPPLLEYLGVSN 140

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           +     L  +L ++    N L       L     L  +   +N    ++PD   S   L+
Sbjct: 207 LKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LE 260

Query: 499 LVLLNNNLLEGRVPEELYSI 518
            + + +N L   +PE   S+
Sbjct: 261 ALNVRDNYLT-DLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           + +    L +L+  N +  +L   LP       L  L +S+NQ    +P+ L +SS L++
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSD-LPP-----LLEYLGVSNNQLE-KLPE-LQNSSFLKI 157

Query: 500 VLLNNNLLEGRVPEEL 515
           + ++NN L+ ++P+  
Sbjct: 158 IDVDNNSLK-KLPDLP 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            L  +L  L++S N     L       +L  L+ S N+   S+ D   S   L+ + ++N
Sbjct: 274 ELPQSLTFLDVSENIF-SGLSELPP--NLYYLNASSNEIR-SLCDLPPS---LEELNVSN 326

Query: 505 NLLEGRVPEEL 515
           N L   +P   
Sbjct: 327 NKLI-ELPALP 336

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSI 487
           + G +   G  S   +    L  L+LS NSL     +        L  L+LS       +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268

Query: 488 PDSLTSSSKLQLVLLNNNLLEG 509
           P  L   +KL ++ L+ N L+ 
Sbjct: 269 PKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGS 486
            L + L  L+LS N L    PS      +  L L  N F  S
Sbjct: 271 GLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-----SGLGQQSLVRLDLSD 480
           +  + +       +  +++ +   L  L+LS N   G          L   +L  L L +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 481 NQFT---GSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
                  G       +  +LQ + L++N L        
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +  L+ L  LN+ +N +  +  S L     L  L L++NQ      + +   + L  + L
Sbjct: 261 VKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 503 NNNLLEG 509
           + N +  
Sbjct: 319 SQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ LS L +L L+ N LG      +G   +L  L LS N  T   P  L S SK+     
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340

Query: 503 NNNLLE 508
            N +++
Sbjct: 341 ANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ LS L  L + TN +  +  + +     L  L++  NQ +      L + S+L  + L
Sbjct: 239 LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 503 NNNLLEGRVPEEL 515
           NNN L     E +
Sbjct: 295 NNNQLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           +S L  L NL + TN +  T  S L    +L  L L+++  +   P  L + +K+  + L
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139

Query: 503 NNNLLEGRVPEEL 515
             N         L
Sbjct: 140 GANHNLS-DLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           I+++ +  + +   I   I  L+NL  LNL+ N +     S L     L  L +  N+ T
Sbjct: 46  ITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT 101

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
                +L + + L+ + LN + +  
Sbjct: 102 --DISALQNLTNLRELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           +LG+      +S  +S ++ L  L ++ + +     + +     L  L L+ NQ     P
Sbjct: 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP 194

Query: 489 DSLTSSSKLQLVLLNNNLLEG 509
             L S + L       N +  
Sbjct: 195 --LASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L++L       N +  T  + +     L  L + +N+ T   P  L + S+L  + +
Sbjct: 195 LASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250

Query: 503 NNNLLEG 509
             N +  
Sbjct: 251 GTNQISD 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           LS+L  L ++ NS        +    ++L  LDLS  Q     P +  S S LQ++ + +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 505 NLLEGRVPEELYS 517
           N L+  VP+ ++ 
Sbjct: 504 NQLK-SVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497
           +S     L  L +L+   ++L       +    ++L+ LD+S      +        S L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 498 QLVLLNNNLLEGRVPEEL 515
           +++ +  N  +     ++
Sbjct: 448 EVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
           +DL    ++         LS+L  L L+ N +  +L  G   G  SL +L   +      
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 115

Query: 487 IPDSLTSSSKLQLVLLNNNLL 507
               +     L+ + + +NL+
Sbjct: 116 ENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQF 483
              +DL    L+   S        L  L+LS   +  T+  G       L  L L+ N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 484 TGSIPDSLTSSSKLQLVLLNNNLLE 508
                 + +  S LQ ++     L 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT--GSIPDSLTSSSKLQLVLLNN 504
           L +L  L  ++N  G    S +   SL  LDLS N  +  G    S   ++ L+ + L+ 
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 505 NLL 507
           N +
Sbjct: 383 NGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 430 DLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGS 486
            +     +      I + L NL  L+LS   L   L         SL  L+++ NQ    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 487 IPDSLTSSSKLQLVLLNNN 505
                   + LQ + L+ N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFT-GSIPDSLTSSSKLQLVLLN 503
           LS+L  L     +L  +L +      ++L  L+++ N      +P+  ++ + L+ + L+
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 504 NNLLEGRVPEELYS 517
           +N ++     +L  
Sbjct: 158 SNKIQSIYCTDLRV 171

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           +      L    +  I  L  L  LN++ N +    LP       +L  LDLS N+    
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 487 IPDSLTSSSKLQLVLLNNNL 506
               L    ++ L+ L+ +L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDL 184

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 447 LSNLVNLNLSTNSL---GGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           L +L  L+LS N L   G    S  G  SL  LDLS N    ++  +     +L+ +   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 504 NNLLE 508
           ++ L+
Sbjct: 405 HSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLG-----QQSLVRLDLSDNQFTGSIPDSLTSS 494
           + +  S L+NL +L+LS+N +     + L          + LDLS N     I       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 495 SKLQLVLLNNNLLEGRVPEEL 515
            +L  + L NN     V +  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTC 220

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
              L  ++LS N +   L      G +SL  L L  N+ T  +P    + L     LQL+
Sbjct: 55  YKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLF---SLQLL 109

Query: 501 LLNNNLLEGRVPE 513
           LLN N +   +  
Sbjct: 110 LLNANKIN-CLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +L +L L  N +   LP  L  G  SL  L L+ N+    +       L     L L+
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLH---NLNLL 133

Query: 501 LLNNNLLEGRVPEELYS 517
            L +N L+  + +  +S
Sbjct: 134 SLYDNKLQ-TIAKGTFS 149

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L +L  L L+ N +   L         +L  L L DN+       + +    +Q + L  
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 505 N 505
           N
Sbjct: 162 N 162

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           +  L  L +S N L   L        +L  LDLS N     +  +     +L+ + L++N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 506 LLE 508
            + 
Sbjct: 335 SIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 391 VPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNL 450
           V  +  +N  P  P          C  +  +   V   + +  Q    Y   +   L+N 
Sbjct: 1   VGGQQRYNVKPRQP-------EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQ 53

Query: 451 VNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLL 507
             +    +++   LP+ L    + +  L+L+D Q    I   +   +  +Q + +  N +
Sbjct: 54  KIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI 111

Query: 508 EGRVPEEL 515
              +P  +
Sbjct: 112 R-YLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLN 503
           +  L  L L  N L  +LP G+      L  L +S+N     I D    +++ LQ + L+
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 504 NNLLE 508
           +N L 
Sbjct: 180 SNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            +   L  L L  N+L       L    LV +DLS N+    +        +L+ + ++N
Sbjct: 229 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 505 NLLE 508
           N L 
Sbjct: 288 NRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              +  LNL+   +   + +       ++ +L +  N      P    +   L +++L  
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 505 NLLEGRVPEEL 515
           N L   +P  +
Sbjct: 133 NDLS-SLPRGI 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              L  L++S N+L   +         SL  L LS N+ T  +  SL  S  L    ++ 
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSY 201

Query: 505 NLLE 508
           NLL 
Sbjct: 202 NLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           ++     +  L  L+LS N L   +     Q   L  L L  N    ++  S   + K  
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK-N 349

Query: 499 LVLLNNNL 506
           L L +N+ 
Sbjct: 350 LTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
            +++   +  L+ S NS+   +   +    L  L L  N  T      L +   L  V L
Sbjct: 206 TLAIPIAVEELDASHNSI-NVVRGPV-NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 261

Query: 503 NNNLLE 508
           + N LE
Sbjct: 262 SYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           +SL+ +L + N+S N L  TL   +   ++  LD S N     +   +     L ++ L 
Sbjct: 188 LSLIPSLFHANVSYNLL-STLAIPI---AVEELDASHNSIN-VVRGPVNVE--LTILKLQ 240

Query: 504 NNLL 507
           +N L
Sbjct: 241 HNNL 244

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           +  L  L +S N L   L        +L  LDLS N     +  +     +L+ + L++N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 506 LLE 508
            + 
Sbjct: 329 SIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--G 469
              C  +  +   V   + +  Q    Y   +   L+N   +    +++   LP+ L   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDS 67

Query: 470 QQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            + +  L+L+D Q       +   +  +Q + +  N +   +P  +
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
              +  L +  N++   LP  + Q    L  L L  N  + S+P     ++ KL  + ++
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149

Query: 504 NNLLEGRVPEEL 515
           NN LE R+ ++ 
Sbjct: 150 NNNLE-RIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            +   L  L L  N+L       L    LV +DLS N+    +        +L+ + ++N
Sbjct: 223 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 505 NLLE 508
           N L 
Sbjct: 282 NRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLN 503
           +  L  L L  N L  +LP G+      L  L +S+N     I D    +++ LQ + L+
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173

Query: 504 NNLLE 508
           +N L 
Sbjct: 174 SNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              L  L++S N+L   +         SL  L LS N+ T  +  SL  S  L    ++ 
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSY 195

Query: 505 NLLE 508
           NLL 
Sbjct: 196 NLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              +  LNL+   +   + +       ++ +L +  N      P    +   L +++L  
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 505 NLLEGRVPEEL 515
           N L   +P  +
Sbjct: 127 NDLS-SLPRGI 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           ++     +  L  L+LS N L   +     Q   L  L L  N    ++  S   + K  
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK-N 343

Query: 499 LVLLNNNL 506
           L L +N+ 
Sbjct: 344 LTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
            +++   +  L+ S NS+   +   +    L  L L  N  T      L +   L  V L
Sbjct: 200 TLAIPIAVEELDASHNSI-NVVRGPV-NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 255

Query: 503 NNNLLE 508
           + N LE
Sbjct: 256 SYNELE 261

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           + +L  L++S NS+      G     +SL+ L++S N  T +I   L    +++++ L++
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430

Query: 505 NLLE 508
           N ++
Sbjct: 431 NKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
             +L++LN+S+N L  T+   L  + +  LDL  N+   SIP  +     LQ + + +N 
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLPPR-IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

Query: 507 LEGRVPE 513
           L+  VP+
Sbjct: 456 LK-SVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
           ++ S  L   I     L   +  L+L +N +  ++P  + + ++L  L+++ NQ   S+P
Sbjct: 405 NMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 489 D-SLTSSSKLQLVLLNNN 505
           D      + LQ + L+ N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           LS L  L +S N +   L   +    Q L  LDLS N+          +   L+ + L+ 
Sbjct: 44  LSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSF 99

Query: 505 NLL 507
           N  
Sbjct: 100 NAF 102

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L+NL +L LS N L   + S       +L  LDLS N    ++     +    L+++LL 
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 504 NNLLEGRVPEE 514
           NN +   V   
Sbjct: 121 NNHIV-VVDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  L L  N +   +          L +L LS NQ +   P           KL L+
Sbjct: 111 LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168

Query: 501 LLNNNLLE 508
            L++N L+
Sbjct: 169 DLSSNKLK 176

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 13/265 (4%)

Query: 252 NTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDIL 311
           +           L      +  ++++           +W       S   +  Q  F ++
Sbjct: 262 SRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVI 321

Query: 312 VNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND 371
               +  +  +                + L   EL+V+   V+ + L S  E   L P +
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPEN 381

Query: 372 LSTVPEQVIAMRALKESLRVPDR-------MGWNGDPCAPTNWDAWEGITCHPNKDETAV 424
              +   ++ MRAL   L   +           +    A  +    + +  +        
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483
            +  + L  + L   +   +  L  + +L+LS N L   LP  L   + L  L  SDN  
Sbjct: 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNAL 498

Query: 484 TGSIPDSLTSSSKLQLVLLNNNLLE 508
             ++   + +  +LQ +LL NN L+
Sbjct: 499 E-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
            +DL    L+  +   ++ L  L  L  S N+L      G+     L  L L +N+    
Sbjct: 467 HLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQ-Q 522

Query: 487 IPD--SLTSSSKLQLVLLNNN 505
                 L S  +L L+ L  N
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGN 543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 18/85 (21%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +L  L +   + G  + +   +   SL+ L L  NQF   +     + L     L+++
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLA---NLEVL 108

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAF 525
            L    L+           + G  F
Sbjct: 109 TLTQCNLD--------GAVLSGNFF 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  L+LS N +   L      G  +L  L L  NQ   S+P    D LTS   LQ +
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTS---LQKI 400

Query: 501 LLNNN 505
            L+ N
Sbjct: 401 WLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
            ++L  L L+ N +   +      G   L++L+LS N    SI     ++L    KL+++
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLD---KLEVL 352

Query: 501 LLNNNLLE 508
            L+ N + 
Sbjct: 353 DLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L++L  L L  N++    P+      +    LDL+ N+   SI      +        L 
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR 186

Query: 501 LLNNNLL 507
           L +  L 
Sbjct: 187 LSSITLQ 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLN 503
           L  L  L L +     T+         +L  LDL  ++     PD+      L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 504 NNLLEGRVPEEL 515
             L +  + +  
Sbjct: 107 CGLSDAVLKDGY 118

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGL------GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
           S   +L  L L  N L     + L      G   L  L L+ N      P   +  + L+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 499 LVLLNNNLL 507
            + LN+N L
Sbjct: 508 GLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 429 IDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTG 485
           ++LGSQ     I  +    L NL  L+L ++ +   L      G   L  L L     + 
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 486 SI--PDSLTSSSKLQLVLLNNNLL 507
           ++       +   L  + L+ N +
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L +L  LNL+ N +   +      G  +L  L+LS N        +     K+  + L  
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 505 NLL 507
           N +
Sbjct: 348 NHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           L+ L  L+L++N L   L       +L  LD+S NQ     PD   S   L ++ + +N
Sbjct: 503 LTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP----SGLGQQSLVRLDLSDNQFTG 485
              S  +    +  + L  +++      +++         +GL + S+  LDLS      
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 486 SIPDSLTSSSKLQLVLLNNNLLE 508
                  +   L+++ L  N + 
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 447 LSNLVNLNLSTNSL-GGTLPSGL--GQQSLVRLDLSDNQFTG-SIPDSLTSSSKLQLVLL 502
           L +L  L L    L    L  G     ++L RLDLS NQ     +  S    + L+ +  
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 503 NNNLLE 508
           ++N + 
Sbjct: 156 SSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L NL  LNLS N LG  L S    G   +  +DL  N        +     KLQ + L +
Sbjct: 313 LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 505 NLLE 508
           N L 
Sbjct: 372 NALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 441 SDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
            D    LS+L  L L+ N L  +LP G+     +L  L L+ N+ T  +  +   ++ L+
Sbjct: 473 WDVFEGLSHLQVLYLNHNYL-NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPAN-LE 529

Query: 499 LVLLNNNLL 507
           ++ ++ N L
Sbjct: 530 ILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTS--SSKLQLVLL 502
           L  L  L+LS N +             SL  +D S NQ        L       L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 503 NNNLLEGRVPEELYSIG 519
             N L  RV  +     
Sbjct: 182 AANSLYSRVSVDWGKCM 198

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVL 501
           IS LSNL  L +    +       L    SL  LD+S +    SI   + +  K+  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 502 LNNNLL 507
             N  +
Sbjct: 144 SYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           I    N+ +L ++      T  + +    +L RL +     T     +L+  + L L+ +
Sbjct: 62  IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 503 NNNLLEGRVPEEL 515
           +++  +  +  ++
Sbjct: 120 SHSAHDDSILTKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 12/78 (15%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487
           + +  + +       +S L++L  L++S ++   ++ + +     +  +DLS N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 488 PDSLTSSSKLQLVLLNNN 505
              L +  +L+ + +  +
Sbjct: 153 -MPLKTLPELKSLNIQFD 169

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
              L  L+L+ N+L   LP+GL  G ++L  L L +N    +IP     S  L    L+ 
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 505 N 505
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
            + L  LNL    L   L        L  LDLS NQ   S+P    +   L ++ ++ N 
Sbjct: 54  YTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111

Query: 507 LE 508
           L 
Sbjct: 112 LT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  L++S N L  +LP G  +    L  L L  N+   ++P           KL+ +
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP---KLEKL 153

Query: 501 LLNNNLL 507
            L NN L
Sbjct: 154 SLANNNL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498
            + D       +  LNLS+  +   + + +  Q+L  LD+S+N    S    L     LQ
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGI-RVVKTCI-PQTLEVLDVSNNNLD-SFSLFLPR---LQ 454

Query: 499 LVLLNNNLLE 508
            + ++ N L+
Sbjct: 455 ELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           L  L  L +S N L  TLP       L+ + +S NQ            + LQ + L+ N
Sbjct: 450 LPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL-GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
           L NL +L++S N+    +P      + +  L+LS       +   +  +  L+++ ++NN
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNN 441

Query: 506 LLEGRVPEELYS 517
            L+      L  
Sbjct: 442 NLD-SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LV 500
           +   +NL  L L ++ +  T+         SL  LDLSDN  +          S L+ L 
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 501 LLNNNL 506
           L+ N  
Sbjct: 105 LMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQF 483
           I ++ +    L   +S   SLL  +  + +  + +   +P    Q   SL  LDLS+N  
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

Query: 484 TGSIPDSLTSSSKLQ----LVLLNNNL 506
                 +            LVL  N+L
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTG-SIPDSLTSSSKLQ-LVLL 502
           L +L +L+LS N L  +L S       SL  L+L  N +    +     + + LQ L + 
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 503 NNNLL 507
           N    
Sbjct: 132 NVETF 136

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG--LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L+NL  L +        +      G  SL  L++           SL S   +  + L+ 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 505 NLLE 508
           +   
Sbjct: 182 SESA 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD 489
           G+   + ++ D  + L NL  L+LS   L   L         SL  L++S N F      
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 490 SLTSSSKLQLVLLNNNLLEGRVPEEL 515
                + LQ++  + N +     ++ 
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSI-PDSLTSSSKLQLVLLN 503
           L NL+ L++S         +G+  G  SL  L ++ N F  +  PD  T    L  + L+
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 504 NNLLEGRVPEEL 515
              LE ++    
Sbjct: 184 QCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 447 LSNLVNLNLSTNSLG-GTLPSG--LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           L+ L  L+LS+N L      S    G  SL  LDLS N    ++  +     +L+ +   
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 504 NNLLEGRVPEE 514
           ++ L+ ++ E 
Sbjct: 110 HSNLK-QMSEF 119

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLN 503
           L  L +L+   ++L       +    ++L+ LD+S      +        S L+ L +  
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 504 NNLLE 508
           N+  E
Sbjct: 160 NSFQE 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
           +  LG   +   +S   + L  +  L      +      G+    +L +++ S+NQ T  
Sbjct: 28  KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 487 IPDSLTSSSKLQLVLLNNNLLEG 509
            P  L + +KL  +L+NNN +  
Sbjct: 84  TP--LKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486
            +   +  +       + +L+NL  L+L+ N L       L    +L  LDL++NQ +  
Sbjct: 203 SLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 258

Query: 487 IPDSLTSSSKLQLVLLNNNLLEG 509
            P  L+  +KL  + L  N +  
Sbjct: 259 AP--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L+N+  L+   N +     + L     + +L L+D  +T +  +   + S    V  
Sbjct: 349 LANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 503 NNNLL 507
               L
Sbjct: 407 VTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L+ L NL L+ N L     S +   ++L  L L  N  +   P  ++S +KLQ +  
Sbjct: 283 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338

Query: 503 NNNLLEG 509
            NN +  
Sbjct: 339 YNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++ L+ L  L++S+N +  +  S L +  +L  L  ++NQ +   P  L   + L  + L
Sbjct: 173 LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 503 NNNLLEG 509
           N N L+ 
Sbjct: 229 NGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           IS L NL  L L  N++  +  S +     L RL   +N+ +     SL + + +  +  
Sbjct: 305 ISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 360

Query: 503 NNNLLEG 509
            +N +  
Sbjct: 361 GHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
           ++ +     G+K    D +  L+NL  +N S N L  T  + L     LV + +++NQ  
Sbjct: 48  VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIA 103

Query: 485 GSIPDSLTSSSKLQLVLLNNNLLEG 509
              P  L + + L  + L NN +  
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
           ++ L+NL +L+L+ N +   L    G   L  L L  NQ +   P  L   + L  + LN
Sbjct: 239 LASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 504 NNLLEG 509
            N LE 
Sbjct: 296 ENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 440 ISDKISL--LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSK 496
           ++D   L  L+ LV++ ++ N +     + L    +L  L L +NQ T   P  L + + 
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTN 135

Query: 497 LQLVLLNNNLLEG 509
           L  + L++N +  
Sbjct: 136 LNRLELSSNTISD 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           LSNL  LNL+  +L   +P+      L  LDLS N  +   P S      LQ + +  + 
Sbjct: 184 LSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 507 LE 508
           ++
Sbjct: 243 IQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L LS N +  T+  G   G  +L  L+L DN+ T +IP  +    SKL+ + L 
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144

Query: 504 NNLLE 508
           NN +E
Sbjct: 145 NNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L  L+LS N L   +  G   G   L +L +  +Q      ++  +   L  + L +
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 505 NLLEGRVPEELYS 517
           N L   +P +L++
Sbjct: 265 NNLT-LLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSL-TSSSKLQ-LVLL 502
           L+NL  L L  N L  T+P+G       L  L L +N    SIP         L+ L L 
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG 168

Query: 503 NNNLLE 508
               L 
Sbjct: 169 ELKRLS 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L +  + +   +        QSLV ++L+ N  T  +P D  T    L+ + L+
Sbjct: 230 LMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287

Query: 504 NN 505
           +N
Sbjct: 288 HN 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           L NL  LNL   ++   +P+      L  L++S N F    P S    S L+ + + N+ 
Sbjct: 195 LFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 507 LEGRVPEELYSIGVHGGAFE 526
           +            +   AF+
Sbjct: 254 VS----------LIERNAFD 263

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L  L +S N     +  G   G  SL +L + ++Q +    ++    + L  + L +
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 505 NLLEGRVPEELYS 517
           N L   +P +L++
Sbjct: 276 NNLS-SLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L L  NS+   +  G   G  SL  L+L DN  T  IP  +    SKL+ + L 
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155

Query: 504 NNLL 507
           NN +
Sbjct: 156 NNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQ-LVLL 502
           L++L  L L  N L   +PSG       L  L L +N    SIP  +      L  L L 
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 503 NNNLLE 508
               LE
Sbjct: 180 ELKKLE 185

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           LS+L  L +  + +   +      G  SLV L+L+ N  + S+P D  T    L  + L+
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

Query: 504 NN 505
           +N
Sbjct: 299 HN 300

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 45/354 (12%), Positives = 101/354 (28%), Gaps = 44/354 (12%)

Query: 187 YDAATIGNNHILVNYGRL-TSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT 245
           +     G + I VNYG+L T G  Q          +F  + +++ A+    A+ + K   
Sbjct: 16  WSIDVRGTDVI-VNYGKLGTDGQTQ--------VKNFSSAGEAEKAAGKLIAEKTKKGYV 66

Query: 246 TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQ 305
                             L          +   +  D KL  L                 
Sbjct: 67  ETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSD 126

Query: 306 RVFDILVNDK---NVTRVDIFNSVGSFAAYSWHYVA---------KNLSSTELTVKLVPV 353
               I+ N +   +   +   +        SW               L++ ++       
Sbjct: 127 IADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186

Query: 354 VGAALISGLENYALVPNDLSTVPEQVIAMRALK--ESLRVPDRMGWNGDPCAPTNWDAWE 411
           +G      L++  ++   L     + I    L   E L +   +   G       +    
Sbjct: 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246

Query: 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKIS---LLSNLVNLNLSTNSLGGT----L 464
                PN       +  + +     +  + +      +L  L  +++S   L       L
Sbjct: 247 SKDRFPN-------LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299

Query: 465 PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517
              + + + L  +++  N  +  +   L  S       +  ++ + +  ++ YS
Sbjct: 300 LDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP-----MKIDVSDSQEYDDDYS 348

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L +L  L L  N +   +          L+ L L  N  + ++P ++L     LQ + LN
Sbjct: 176 LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

Query: 504 NN 505
           +N
Sbjct: 234 DN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           L  L  L+L    L   L  GL  G  +L  L L DN    ++PD +      L  + L+
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 504 NNLLE 508
            N + 
Sbjct: 162 GNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L NL +L L  N +  ++P     G  SL RL L  N+     P +     +L  + L  
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 505 NLLEGRVPEELYS 517
           N L   +P E  +
Sbjct: 211 NNLS-ALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L+ L  L+LS N+   ++      G   L  L L        +        + LQ + L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 504 NNLL 507
           +N L
Sbjct: 138 DNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
             NL  L L +N L   + +    G   L +LDLSDN    S+   +     +L  + L+
Sbjct: 55  CRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 504 NNLLE 508
              L+
Sbjct: 114 RCGLQ 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 21/89 (23%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
            S +  + L++N L   +   +  G +SL  L L  N+ T  +       L+    ++L+
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS---SVRLL 134

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVK 529
            L +N +   V           GAF+ + 
Sbjct: 135 SLYDNQIT-TVAP---------GAFDTLH 153

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L  L  +N S N +   +  G   G   +  + L+ N+   ++       L     L+ +
Sbjct: 56  LPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLE---SLKTL 110

Query: 501 LLNNNLLE 508
           +L +N + 
Sbjct: 111 MLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +L  L L +N +   + +    G  S+  L L DNQ T ++     D+L S   L  +
Sbjct: 104 LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS---LSTL 158

Query: 501 LLNNN 505
            L  N
Sbjct: 159 NLLAN 163

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
            S L  L L  N +   + +G      +L  L L +N+ +  +P  L     LQ+V L+ 
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 505 NLLE 508
           N + 
Sbjct: 274 NNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNN 505
           L  L  L +S N L   +P  L   SLV L + DN+    +P    +    +  + +  N
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN 157

Query: 506 LLEGRVPEELYSIGVHGGAFE 526
            LE        + G   GAF+
Sbjct: 158 PLE--------NSGFEPGAFD 170

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 446 LLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFT-GSIPDSLTSSSKLQLVLL 502
           L S+LV L +  N +   +P G+  G +++  +++  N               KL  + +
Sbjct: 121 LPSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 503 NNNLLEGRVPEEL 515
           +   L   +P++L
Sbjct: 180 SEAKLT-GIPKDL 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVL 501
            L   L  L+L  N +   +          L RL L  NQ    I + SL+    L+ + 
Sbjct: 190 DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELH 247

Query: 502 LNNNLLEGRVPEELYS 517
           L+NN L  RVP  L  
Sbjct: 248 LDNNKLS-RVPAGLPD 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
             +L  L L+ N +   +  G      +L  L L  N+    IP    T  S L  + ++
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 504 NNLLE 508
            N + 
Sbjct: 113 ENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLN 503
           L++L  L L   +L  ++P+        L+ L L           S     +L+ L + +
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 504 NNLLE 508
              L+
Sbjct: 210 WPYLD 214

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L+ L L   ++   +          L  L++S   +  ++  +      L  + + +
Sbjct: 175 LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 505 NLLEGRVPEEL 515
             L   VP   
Sbjct: 234 CNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           LSNL  L++S N +   L   +     +L  L++ DN     I   + +  + L+ + L 
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLE 160

Query: 504 NNLLE 508
              L 
Sbjct: 161 KCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           L NL +L +  N L   +      G  SL +L L     T SIP  +L+    L ++ L 
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 504 NNLLE 508
           +  + 
Sbjct: 185 HLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSI 487
           ++        ++       NL +L+++  +L   +P         L  L+LS N  +   
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 488 PDSLTSSSKLQLVLLNNNLLE 508
              L    +LQ + L    L 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L NL  L L +N L   +P G+  G  +L +LD+S+N+    +         L+ + + +
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 505 NLL 507
           N L
Sbjct: 138 NDL 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L  L  LNLS N +  T+   +      L  + L   Q     P +    + L+++ ++ 
Sbjct: 247 LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 505 NLLEGRVPEELYS 517
           N L   + E ++ 
Sbjct: 306 NQLT-TLEESVFH 317

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504
           L+NL  L LS NS+   + +G       L  L L++N+    +P  L     +Q+V L+N
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 505 NLLE 508
           N + 
Sbjct: 273 NNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
            L  +L  L+L  N +   + +    G  +L +L LS N  +     SL ++  L+ + L
Sbjct: 189 GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 503 NNNLLEGRVPEELYS 517
           NNN L  +VP  L  
Sbjct: 248 NNNKLV-KVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS-SKLQLVLLNNN 505
           L  L  L LS N L   LP  +  ++L  L + +N+ T  +  S+ +  +++ +V L  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKM-PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155

Query: 506 LLEGRVPEELYSIGVHGGAFE 526
            L+        S G+  GAF+
Sbjct: 156 PLK--------SSGIENGAFQ 168

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 446 LLSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSI--PDSLTSSSKLQLVL 501
           +   L  L +  N +   +   +  G   ++ ++L  N    S     +     KL  + 
Sbjct: 119 MPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 502 LNNNLLEGRVPEEL 515
           + +  +   +P+ L
Sbjct: 178 IADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 447 LSNLVNLNLSTNSLG-GTLPSGL--GQQSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLL 502
           L+ ++ + L TN L    + +G   G + L  + ++D   T +IP  L  S  L  L L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLD 200

Query: 503 NNNL 506
            N +
Sbjct: 201 GNKI 204

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 25/91 (27%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L+ L  L+LS N +  +LP G    L +  L  L L +N+   S+P    D LT   +L+
Sbjct: 51  LTQLTKLSLSQNQI-QSLPDGVFDKLTK--LTILYLHENKLQ-SLPNGVFDKLT---QLK 103

Query: 499 LVLLNNNLLEGRVPEELYSIGVHGGAFEYVK 529
            + L+ N L+  VP+         G F+ + 
Sbjct: 104 ELALDTNQLK-SVPD---------GIFDRLT 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L+ L  L L+ N L  +LP G+      L +L L  NQ   S+P    D LT   KL+ +
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT---KLKEL 136

Query: 501 LLNNNLLEGRVPE 513
            LN N L+  +P 
Sbjct: 137 RLNTNQLQ-SIPA 148

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 21/89 (23%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L +LV L L  N L   +      G   +  L L +N+    I       L    +L+ +
Sbjct: 53  LPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLH---QLKTL 107

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVK 529
            L +N +   V           G+FE++ 
Sbjct: 108 NLYDNQIS-CVMP---------GSFEHLN 126

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-----GTLPSGLGQ-Q 471
                +++  +  L +  +K   +        L  + +  N +        L  GL   Q
Sbjct: 158 APPLRSIICGRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 472 SLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLL 507
            L  LDL DN FT     ++  +L S   L+ + LN+ LL
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT---LPSGLGQ---- 470
           +     +V+S   +G++  + ++S+ I+   +L     S    G     +P  L      
Sbjct: 31  DDSVKEIVLSGNTIGTEAAR-WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 471 ----QSLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLL 507
                 L  + LSDN F       + D L+  + L+ + L+NN L
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
             NL  L L++N +  T+         SL  LDLS N  + ++        S L  + L 
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132

Query: 504 NNLLE 508
            N  +
Sbjct: 133 GNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 441 SDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDS-LTSSSKLQL 499
           ++ +       N+ ++  SL   +        L+ L+ S NQ   S+PD      + LQ 
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 500 VLLNNN 505
           + L+ N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN 503
           L+ L  L +  + L  +         Q++  L L   Q    + +  +  +S ++ + L 
Sbjct: 173 LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 504 NNLLEGRVPEELYSI 518
           +  L+     EL + 
Sbjct: 231 DTDLDTFHFSELSTG 245

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L NL  L ++ N L   LP G+  Q  +L  L L  NQ   S+P    DSLT   KL  +
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT---KLTYL 138

Query: 501 LLNNNLL 507
            L  N L
Sbjct: 139 SLGYNEL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L+ L  L+L  N L  +LP G+     SL  L L +NQ    +P    D LT   +L+ +
Sbjct: 132 LTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT---ELKTL 186

Query: 501 LLNNNLL 507
            L+NN L
Sbjct: 187 KLDNNQL 193

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 18/87 (20%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           L+ L  L+L TN L   LPS     L    L  L +  N+ T  +P  +   + L  + L
Sbjct: 87  LTQLTVLDLGTNQLT-VLPSAVFDRLVH--LKELFMCCNKLT-ELPRGIERLTHLTHLAL 142

Query: 503 NNNLLEGRVPEELYSIGVHGGAFEYVK 529
           + N L+  +P          GAF+ + 
Sbjct: 143 DQNQLK-SIPH---------GAFDRLS 159

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 21/89 (23%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
             +L  ++LS N +  TL +        L+ L LS N+    IP    D L     L+L+
Sbjct: 53  YKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLK---SLRLL 107

Query: 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVK 529
            L+ N +   VPE         GAF  + 
Sbjct: 108 SLHGNDIS-VVPE---------GAFNDLS 126

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           ++ L+ L LS N L   +P     G +SL  L L  N  +  +P    + L++   L  +
Sbjct: 77  MTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA---LSHL 131

Query: 501 LLNNN 505
            +  N
Sbjct: 132 AIGAN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 11/84 (13%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSI 487
           DL +  LK   +     L++L  L L  N L  +LP+G+  +  SL  L+LS NQ   S+
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 488 P----DSLTSSSKLQLVLLNNNLL 507
           P    D LT   +L+ + LN N L
Sbjct: 92  PNGVFDKLT---QLKELALNTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 25/91 (27%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L++L  LNLSTN L  +LP+G    L Q  L  L L+ NQ   S+P    D LT   +L+
Sbjct: 75  LTSLTYLNLSTNQL-QSLPNGVFDKLTQ--LKELALNTNQLQ-SLPDGVFDKLT---QLK 127

Query: 499 LVLLNNNLLEGRVPEELYSIGVHGGAFEYVK 529
            + L  N L+  VP+         G F+ + 
Sbjct: 128 DLRLYQNQLK-SVPD---------GVFDRLT 148

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485
           ++ +D  +  +       I  L+ L  L  ++N++     S     +L  L    N+ T 
Sbjct: 44  LTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLDLSQN--TNLTYLACDSNKLT- 98

Query: 486 SIPDSLTSSSKLQLVLLNNNLLE 508
           ++   +T  +KL  +  + N L 
Sbjct: 99  NLD--VTPLTKLTYLNCDTNKLT 119

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 15/67 (22%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L NL  L  ++N L   +P+G    L Q  L +LDL+DN    SIP    D+L S   L 
Sbjct: 56  LVNLQQLYFNSNKL-TAIPTGVFDKLTQ--LTQLDLNDNHLK-SIPRGAFDNLKS---LT 108

Query: 499 LVLLNNN 505
            + L NN
Sbjct: 109 HIYLYNN 115

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           LS L  L LS N +  +L   +    Q L  LD+S N+   +I    + S   L+ + L+
Sbjct: 75  LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMAS---LRHLDLS 129

Query: 504 NNLL 507
            N  
Sbjct: 130 FNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGL------GQQSLVRLDLSDNQFTGSIPDSLTS 493
                 +  N+ +L     SL  +L S          +S++ L+LS N  TGS+   L  
Sbjct: 392 FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449

Query: 494 SSKLQLVLLNNNLLE 508
             K++++ L+NN + 
Sbjct: 450 -PKVKVLDLHNNRIM 463

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQ--SLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
           L+NL  L L  N L  +LP G+  +  +L  L+L+ NQ   S+P    D LT    L  +
Sbjct: 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLT---NLTEL 162

Query: 501 LLNNNLL 507
            L+ N L
Sbjct: 163 DLSYNQL 169

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ 470
               +    V +    L     K  IS  + +   L  LNL +N LG      +  GL  
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82

Query: 471 QS--LVRLDLSDNQFT----GSIPDSLTSSSKLQLVLLNNNLL 507
            S  + +L L +   T    G +  +L +   LQ + L++NLL
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQQ 471
            P      + +    L +   +  ++  +    +   L +S N +       L  GL   
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 472 --SLVRLDLSDNQFT----GSIPDSLTSSSKLQLVLLNNNLL 507
              L  L L     T      +   + S + L+ + L +N L
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ 470
            HP+     + I +  + ++G    +   +    +L  L+L+ N LG      L   L +
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310

Query: 471 Q--SLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLLE 508
               L  L +    FT          L  +  L  + ++NN LE
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 15/67 (22%)

Query: 447 LSNLVNLNLSTNSLGGTLPSG----LGQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQ 498
           L+ L  L+L  N L   LP+G    L Q  L +L L+DNQ   SIP    D+L S   L 
Sbjct: 53  LTQLTRLDLDNNQL-TVLPAGVFDKLTQ--LTQLSLNDNQLK-SIPRGAFDNLKS---LT 105

Query: 499 LVLLNNN 505
            + L NN
Sbjct: 106 HIWLLNN 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 432 GSQGLKGYISDKISLLSNLVNLNLSTNSLG--GTLPSGLGQQSLVRLDLSDNQFTGSIPD 489
             +   G I    +   NL  L+L    L     LP       L +L+LS+N+  G +  
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK---LPKLKKLELSENRIFGGLDM 89

Query: 490 SLTSSSKLQLVLLNNNLLE 508
                  L  + L+ N L+
Sbjct: 90  LAEKLPNLTHLNLSGNKLK 108

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP----DSLTSSSKLQLV 500
              L  L+LS   +  T+  G       L  L L+ N    S+       L+S  KL  V
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 501 LLNNNL 506
               NL
Sbjct: 109 --ETNL 112

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 15/88 (17%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGSIPDSLTSSSKLQ- 498
           K+        L ++ N    ++P    Q      + L L +N FT S+     + +KL  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183

Query: 499 LVLLNNNLLEGRVPEELYSIGVHGGAFE 526
           + L  N  L            +   AF 
Sbjct: 184 VYLNKNKYLT----------VIDKDAFG 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGL--GQQSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLN 503
           L N+  + +S +     L S        +  +++ + +    I  D+L     L+ + + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 504 NNLLE 508
           N  L+
Sbjct: 114 NTGLK 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 431 LGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489
             S+  +G +         L  L+     L  ++ + L +   L +L+LSDN+ +G +  
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 490 SLTSSSKLQLVLLNNNLLE 508
                  L  + L+ N ++
Sbjct: 83  LAEKCPNLTHLNLSGNKIK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	533
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.9
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.65
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.51
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.46
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.4
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.3
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.27
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.26
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.21
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.2
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.2
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.2
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.19
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.16
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.1
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.1
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.1
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.03
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.03
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.02
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.99
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.98
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.92
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.97
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.79
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.4
2w47_A	144	Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.	90.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	89.2
2vzp_A	127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	86.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	84.39
2w3j_A	145	Carbohydrate binding module; sugar-binding protein	83.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	82.82

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.90  E-value=4.5e-24  Score=195.92  Aligned_cols=148  Identities=17%  Similarity=0.101  Sum_probs=112.4

Q ss_pred             ccEEEccCCCCCCCCCCCceEeeCCCceecCCcccc------cCCCCCCCCcCceeeecCCCCCCCcceEeecCCCceEE
Q 009515           30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY  103 (533)
Q Consensus        30 ~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~~~~~cY~l~~~~~~~yl  103 (533)
                      ..|+||||++.. +|..+|+|.+|+.+...|.....      ......+..+|+|+|+||.    ..+|.||+.++|+|+
T Consensus         6 ~~~~INcGg~~~-~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~   80 (174)
T 2jwp_A            6 VIWAVNAGGESH-VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV   80 (174)
T ss_dssp             EEEEEEETSSSE-EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred             EEEEEECCCCCc-cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence            358999999753 56789999998654323322110      1111223568999999985    379999998889999


Q ss_pred             EEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEe-------------cCCeEEEEEeecCCC
Q 009515          104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD  170 (533)
Q Consensus       104 vRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~-------------~~~~l~v~~~~~~~~  170 (533)
                      |||||..-.+... ..+.|||++++.+++++||++.+++...+.++|+.+.+             .++.|.|+|.|....
T Consensus        81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~  159 (174)
T 2jwp_A           81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD  159 (174)
T ss_dssp             EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred             EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence            9999986666554 47899999999999999998776655556778887653             567899999987677


Q ss_pred             CceeeeEEEEEcC
Q 009515          171 PPVIASLEVQQID  183 (533)
Q Consensus       171 ~pfIs~iEl~~l~  183 (533)
                      .||||||||++.+
T Consensus       160 ~a~inaIEI~~~~  172 (174)
T 2jwp_A          160 NPKVCALFIMKGT  172 (174)
T ss_dssp             SSSEEEEEEESSC
T ss_pred             CcEEEEEEEEeCc
Confidence            8999999998753

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.86  E-value=2.5e-22  Score=184.22  Aligned_cols=153  Identities=21%  Similarity=0.245  Sum_probs=110.8

Q ss_pred             EEEeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEeeecceecCCCCCCCCchHHHHHHhhccCcceEEE
Q 009515          199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN  278 (533)
Q Consensus       199 ~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~V~~TA~~~~~~l~~~  278 (533)
                      ++++|+||||+..       .|..+|.|.+|..|...+...   .  ....+...  ..+.+|+.||||||.+..+++|.
T Consensus         5 ~~~~~INcGg~~~-------~d~~gr~w~~D~~~~~~g~~~---~--~~~~~~~~--~~~~~~~~lY~TaR~~~~~~tY~   70 (174)
T 2jwp_A            5 KVIWAVNAGGESH-------VDVHGIHYRKDPLEGRVGRAS---D--YGMKLPIL--RSNPEDQVLYQTERYNEDSFGYD   70 (174)
T ss_dssp             HEEEEEEETSSSE-------EETTTEEECSSCSSTTCCCCC---C--CCTTSCCS--SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred             cEEEEEECCCCCc-------cCCCCCEEcCCcCcccCCccc---c--cccceEec--ccCCCCchhhhhhccCCCCeEEE
Confidence            4689999998752       256899999998764211100   0  01111111  12336899999999887789999


Q ss_pred             EecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCe-ecccccccccCCCcceeeeeeeEee------------cCCce
Q 009515          279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE  345 (533)
Q Consensus       279 ~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~-~l~~~di~~~~~~~~~~~~~l~~l~------------l~~n~  345 (533)
                      |+++++++|+|||||||+..  .+.++|+|||++||+ .++++||..+++...++.+.+.+..            ..++.
T Consensus        71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~  148 (174)
T 2jwp_A           71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK  148 (174)
T ss_dssp             EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred             EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence            99998899999999999975  357899999999998 6789999887766555554443321            24568


Q ss_pred             EEEEeccc-chhhhhhccccccc
Q 009515          346 LTVKLVPV-VGAALISGLENYAL  367 (533)
Q Consensus       346 L~~~l~~~-~~~~iLn~lEi~~l  367 (533)
                      |.++|.|. ...|++|||||++-
T Consensus       149 L~I~f~p~~~~~a~inaIEI~~~  171 (174)
T 2jwp_A          149 LSVEFVKGYYDNPKVCALFIMKG  171 (174)
T ss_dssp             EEEEEECSSSCSSSEEEEEEESS
T ss_pred             EEEEEeccCCCCcEEEEEEEEeC
Confidence            99999875 34599999999863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=8.1e-18  Score=169.18  Aligned_cols=153  Identities=23%  Similarity=0.391  Sum_probs=125.4

Q ss_pred             CCChhHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc--ccchhhhcc
Q 009515          373 STVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLL  447 (533)
Q Consensus       373 ~~~p~~~~~l~~lk~~~~~~~-~~~w~g--dpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g--~~p~~l~~L  447 (533)
                      .+.++|..||+++|+.+..+. ..+|..  ++|.    +.|.||.|.....  ..+++.|+|++|++.+  .+|+.+..+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l   75 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCC
Confidence            367889999999999986442 247854  4442    3499999975321  1358899999999998  889999999


Q ss_pred             CCCCEEEccC-CCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEE
Q 009515          448 SNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF  525 (533)
Q Consensus       448 ~~L~~L~Ls~-N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L  525 (533)
                      ++|++|++++ |.+.+.+|..+.. ++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|..+..+.. |++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC-CCeE
Confidence            9999999995 8998889988888 88999999999998888888888888899999888888888888888776 8888


Q ss_pred             EccCCCC
Q 009515          526 EYVKTPN  532 (533)
Q Consensus       526 ~ls~N~l  532 (533)
                      ++++|++
T Consensus       155 ~L~~N~l  161 (313)
T 1ogq_A          155 TFDGNRI  161 (313)
T ss_dssp             ECCSSCC
T ss_pred             ECcCCcc
Confidence            8888876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2.9e-16  Score=177.61  Aligned_cols=149  Identities=19%  Similarity=0.227  Sum_probs=125.7

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCCCC------------cceeecCCCCCceeEEEEEEeCCCCCc
Q 009515          374 TVPEQVIAMRALKESLRVPDRMGWNGDP----CAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQGLK  437 (533)
Q Consensus       374 ~~p~~~~~l~~lk~~~~~~~~~~w~gdp----c~~~~~~~w------------~gv~c~~~~~~~~~~L~~L~Ls~n~l~  437 (533)
                      +..+|..||.++|+.+..+   +|+...    +.|. .|.|            .||.|...     .+++.|+|+++++.
T Consensus       266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~-~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH-SLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK  336 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC-CCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred             cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC-ccccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence            3467999999999998644   785432    1111 1789            99999862     25899999999999


Q ss_pred             cccchhhhccCCCCEEEc-cCCCCCCC-----------------------------------------------------
Q 009515          438 GYISDKISLLSNLVNLNL-STNSLGGT-----------------------------------------------------  463 (533)
Q Consensus       438 g~~p~~l~~L~~L~~L~L-s~N~l~g~-----------------------------------------------------  463 (533)
                      |.+|++|++|++|+.|+| ++|.++|.                                                     
T Consensus       337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            999999999999999999 77765554                                                     


Q ss_pred             -----------------------CCCccCC-CCccEEEccCCcccc-----------------CCCccCC--CCcCCCEE
Q 009515          464 -----------------------LPSGLGQ-QSLVRLDLSDNQFTG-----------------SIPDSLT--SSSKLQLV  500 (533)
Q Consensus       464 -----------------------iP~~l~~-~~L~~L~Ls~N~l~g-----------------~iP~~~~--~l~~L~~L  500 (533)
                                             +|..++. ++|+.|+|++|+++|                 .+|+.++  +|++|+.|
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence                                   7888888 999999999999998                 4999988  99999999


Q ss_pred             EeecccCcccCchhHHhcccCCcEEEccCCC-C
Q 009515          501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTP-N  532 (533)
Q Consensus       501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~-l  532 (533)
                      +|++|++.|.+|..++.+.. |+.|+|++|+ +
T Consensus       497 ~Ls~N~l~~~iP~~l~~L~~-L~~L~Ls~N~~l  528 (876)
T 4ecn_A          497 ELYNCPNMTQLPDFLYDLPE-LQSLNIACNRGI  528 (876)
T ss_dssp             EEESCTTCCSCCGGGGGCSS-CCEEECTTCTTS
T ss_pred             ECcCCCCCccChHHHhCCCC-CCEEECcCCCCc
Confidence            99999999999999999876 9999999997 5

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.65  E-value=4.3e-17  Score=183.66  Aligned_cols=85  Identities=27%  Similarity=0.486  Sum_probs=49.9

Q ss_pred             cCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEE
Q 009515          447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF  525 (533)
Q Consensus       447 L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L  525 (533)
                      +++|+.|+|++|+++|.+|..++. ++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..+..+.. |+.|
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L  709 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEI  709 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC-CSEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEE
Confidence            345555566666665556655555 55666666666666666666666666666666666666666655555554 5666


Q ss_pred             EccCCCC
Q 009515          526 EYVKTPN  532 (533)
Q Consensus       526 ~ls~N~l  532 (533)
                      |+++|+|
T Consensus       710 ~ls~N~l  716 (768)
T 3rgz_A          710 DLSNNNL  716 (768)
T ss_dssp             ECCSSEE
T ss_pred             ECcCCcc
Confidence            6665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.65  E-value=4.2e-16  Score=171.87  Aligned_cols=147  Identities=17%  Similarity=0.256  Sum_probs=120.7

Q ss_pred             CChhHHHHHHHHHHhcCCCCC----------CCCCCC-CCCCCCCCCC---cceeecCCCCCceeEEEEEEeCCCCCccc
Q 009515          374 TVPEQVIAMRALKESLRVPDR----------MGWNGD-PCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY  439 (533)
Q Consensus       374 ~~p~~~~~l~~lk~~~~~~~~----------~~w~gd-pc~~~~~~~w---~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~  439 (533)
                      +...|..||.++++.+..++.          .+|+.+ +|     |.|   .||.|+..     .+++.|+|+++++.|.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~   96 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCc
Confidence            345688999999988754321          146432 22     688   99999754     2588999999999999


Q ss_pred             cchhhhccCCCCEEEccCCC------------------------------------------------------------
Q 009515          440 ISDKISLLSNLVNLNLSTNS------------------------------------------------------------  459 (533)
Q Consensus       440 ~p~~l~~L~~L~~L~Ls~N~------------------------------------------------------------  459 (533)
                      +|+++++|++|+.|+|++|.                                                            
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence            99999999999999998883                                                            


Q ss_pred             ------------------CCCCCCCccCC-CCccEEEccCCccccC-----------------CCccCC--CCcCCCEEE
Q 009515          460 ------------------LGGTLPSGLGQ-QSLVRLDLSDNQFTGS-----------------IPDSLT--SSSKLQLVL  501 (533)
Q Consensus       460 ------------------l~g~iP~~l~~-~~L~~L~Ls~N~l~g~-----------------iP~~~~--~l~~L~~L~  501 (533)
                                        ++| +|..++. ++|++|+|++|+++|.                 +|+.++  ++++|++|+
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence                              445 7888888 9999999999999986                 899988  999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCC-C
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTP-N  532 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~-l  532 (533)
                      |++|++.|.+|..++++.. |+.|++++|+ +
T Consensus       256 L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~~l  286 (636)
T 4eco_A          256 VYNCPNLTKLPTFLKALPE-MQLINVACNRGI  286 (636)
T ss_dssp             EECCTTCSSCCTTTTTCSS-CCEEECTTCTTS
T ss_pred             ecCCcCCccChHHHhcCCC-CCEEECcCCCCC
Confidence            9999999999988888876 9999999997 5

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=1.2e-16  Score=161.83  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.|+|++|.+++ +|+.+..+++|+.|++++|++.+.+|..+.. ++|+.|+|++|++.+.+|..++++++|+.|+|
T Consensus       206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            345566666666663 4445666666666666666666666666555 66666666666666666666666666666666


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKT  530 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N  530 (533)
                      ++|++.|.+|..++++.. |+.+++..|
T Consensus       285 ~~n~~~~~iP~~l~~L~~-L~~l~l~~~  311 (328)
T 4fcg_A          285 RGCVNLSRLPSLIAQLPA-NCIILVPPH  311 (328)
T ss_dssp             TTCTTCCCCCGGGGGSCT-TCEEECCGG
T ss_pred             CCCCchhhccHHHhhccC-ceEEeCCHH
Confidence            666666666666666554 566655544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=2.7e-16  Score=177.14  Aligned_cols=194  Identities=22%  Similarity=0.317  Sum_probs=136.7

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCC-CChhHHHHHHHHHHhcCCCCCCCCCC-CCCCCCCCCCCcc
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNG-DPCAPTNWDAWEG  412 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~-~~p~~~~~l~~lk~~~~~~~~~~w~g-dpc~~~~~~~w~g  412 (533)
                      .++.+++++|++++.+|.....  +..++.+.+..+.+. .+|..+..+..|+......+.  ..+ .|..-........
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCE
T ss_pred             CCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc--ccCcCCHHHhcCCCCCE
Confidence            4667777777777666666655  666677777666643 566655555554432211110  000 0000000000111


Q ss_pred             eeec--------CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC---------------
Q 009515          413 ITCH--------PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG---------------  469 (533)
Q Consensus       413 v~c~--------~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~---------------  469 (533)
                      +...        +.....++.|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|..+.               
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            1110        11123345689999999999999999999999999999999999988886442               


Q ss_pred             -------------------------------------------------------C-CCccEEEccCCccccCCCccCCC
Q 009515          470 -------------------------------------------------------Q-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       470 -------------------------------------------------------~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                                                                             . ++|+.|+|++|+++|.+|..+++
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                                   2 46889999999999999999999


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|+.|+|++|+++|.+|..++.+.. |+.|||++|+++
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~-L~~LdLs~N~l~  693 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLD  693 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCE
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCC-CCEEECCCCccc
Confidence            999999999999999999999999887 999999999873

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=1.6e-15  Score=141.32  Aligned_cols=131  Identities=18%  Similarity=0.246  Sum_probs=113.6

Q ss_pred             CCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccch-hhhccCCCCEEEccCCCCCCCCCCccCC-CCcc
Q 009515          402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV  474 (533)
Q Consensus       402 c~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~  474 (533)
                      |...+.|.|..+.|.......     ...++.|+|++|.+++..+. .+..+++|+.|+|++|++++..|..+.. ++|+
T Consensus         2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            444455899999998665432     22688999999999976665 4899999999999999999888999998 9999


Q ss_pred             EEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       475 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .|+|++|++++..|..+.++++|+.|+|++|++++..|..+..+.. |+.|+|++|++.
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~  139 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECTTCCBC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC-CCEEEeCCCCcc
Confidence            9999999999988888999999999999999999888888888776 999999999863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.58  E-value=3.4e-16  Score=157.26  Aligned_cols=103  Identities=26%  Similarity=0.324  Sum_probs=83.0

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      |+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|. +.. ++|+.|+|++|+++|.+|..+..+++|+.|+|++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            77788888888888888888888888888888888866665 555 8888888888888888888888888888888888


Q ss_pred             ccCcccCchhHHhcccCCcEEEccCCC
Q 009515          505 NLLEGRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       505 N~l~g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      |+++|.+|.. ..+.. |+.|++++|+
T Consensus       278 N~l~~~ip~~-~~l~~-L~~l~l~~N~  302 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQR-FDVSAYANNK  302 (313)
T ss_dssp             SEEEEECCCS-TTGGG-SCGGGTCSSS
T ss_pred             CcccccCCCC-ccccc-cChHHhcCCC
Confidence            8888888875 55555 8888888886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=1.3e-14  Score=138.86  Aligned_cols=123  Identities=19%  Similarity=0.212  Sum_probs=102.7

Q ss_pred             CCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccC
Q 009515          408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSD  480 (533)
Q Consensus       408 ~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~  480 (533)
                      |.|.++.|.......     ...|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|. .+.. ++|+.|+|++
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence            799999998655332     345889999999999888889999999999999999997 5554 4566 9999999999


Q ss_pred             CccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++++..+..+..+++|+.|+|++|+++ .+|..+..+.. |+.|+|++|+|.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~  148 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH-LTHLALDQNQLK  148 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT-CSEEECCSSCCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC-CCEEECCCCcCC
Confidence            9999666666788999999999999998 88888887766 899999988763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.55  E-value=9.5e-16  Score=155.12  Aligned_cols=185  Identities=17%  Similarity=0.223  Sum_probs=142.4

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      ..++.+++++|.++ .+|..++.  +..++.+++..+.+..+|..+..+.+|+......+.  ..+  ..|..   +...
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~--l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~--~~p~~---~~~~  173 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQ--FAGLETLTLARNPLRALPASIASLNRLRELSIRACP--ELT--ELPEP---LAST  173 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGG--GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TCC--CCCSC---SEEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhc--cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--Ccc--ccChh---Hhhc
Confidence            35777888888888 77777766  778888888888877888877666665443211100  000  01100   0000


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      . .......+..|+.|+|++|+++ .+|..++.+++|+.|++++|+++ .+|..+.. ++|+.|+|++|++.+.+|..++
T Consensus       174 ~-~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          174 D-ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             c-chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence            0 0011122456899999999999 88999999999999999999999 57888888 9999999999999999999999


Q ss_pred             CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++++|+.|+|++|++.+.+|..+..+.. |+.|++++|++
T Consensus       251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~  289 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVN  289 (328)
T ss_dssp             CCCCCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTCTT
T ss_pred             CCCCCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCCCc
Confidence            9999999999999999999999999877 99999999975

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=134.42  Aligned_cols=130  Identities=17%  Similarity=0.229  Sum_probs=109.3

Q ss_pred             CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCc
Q 009515          400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (533)
Q Consensus       400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L  473 (533)
                      ..|...+.|.+..+.|.......     ...++.|+|++|.++ .+|..+..+++|+.|+|++|.+++..+..+.. ++|
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            35655555888889997655332     236899999999998 78899999999999999999999766677888 999


Q ss_pred             cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      +.|+|++|++++..|..+..+++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~L~~N~~  138 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA-LSHLAIGANPL  138 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTT-CCEEECCSSCE
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCcc-ccEEEeCCCCe
Confidence            99999999999888888999999999999999999 67765 555555 99999999986

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.53  E-value=2e-14  Score=136.73  Aligned_cols=131  Identities=19%  Similarity=0.179  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCcceeecCCCCCce-----eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCcc
Q 009515          401 PCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV  474 (533)
Q Consensus       401 pc~~~~~~~w~gv~c~~~~~~~~-----~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~  474 (533)
                      +|...+.|.|..+.|........     ..++.|+|++|++++..+..|..+++|+.|+|++|++++..|..+.. ++|+
T Consensus         4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            45555557888888865442211     23555666666665544445555555555555555555444555555 5555


Q ss_pred             EEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       475 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .|+|++|++++..+..+.++++|+.|+|++|++++..|..+..+.. |+.|+|++|+|
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l  140 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-LNLLSLYDNKL  140 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCC
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC-CCEEECCCCcC
Confidence            5555555555222223444555555555555555333333444333 55555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=3.2e-14  Score=130.33  Aligned_cols=124  Identities=18%  Similarity=0.206  Sum_probs=104.4

Q ss_pred             CCCCcceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccC
Q 009515          407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD  480 (533)
Q Consensus       407 ~~~w~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~  480 (533)
                      .|.|.++.|......     ....|+.|++++|++++..+..+..+++|+.|++++|++++..+..+.. ++|+.|+|++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            389999999865532     2346899999999999877777899999999999999999555555677 9999999999


Q ss_pred             CccccCCCccCCCCcCCCEEEeecccCcccCchhH-HhcccCCcEEEccCCCC
Q 009515          481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l-~~l~~~L~~L~ls~N~l  532 (533)
                      |++++..+..+..+++|+.|+|++|+++ .+|... ..+.. |+.|++++|++
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTS-LQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcc-cCEEEecCCCe
Confidence            9999777777899999999999999999 677665 45555 99999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=1e-14  Score=144.98  Aligned_cols=175  Identities=19%  Similarity=0.177  Sum_probs=129.6

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      .++.+++++|+++...+.....  +..++.+.+..+.+..++.. ..+..|+.. ...    .+          ....  
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L-~Ls----~N----------~l~~--   91 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVD-GTLPVLGTL-DLS----HN----------QLQS--   91 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEECC-SCCTTCCEE-ECC----SS----------CCSS--
T ss_pred             CCCEEEcCCCcCCccCHHHhhc--CCCCCEEECCCCccCcccCC-CCCCcCCEE-ECC----CC----------cCCc--
Confidence            4667888888887555555555  77788888888877766653 222222221 111    10          0111  


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                       .+.....++.|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..+..
T Consensus        92 -l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  170 (290)
T 1p9a_G           92 -LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (290)
T ss_dssp             -CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             -CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence             1111223446889999999999888888999999999999999999555555666 99999999999999544455788


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +++|+.|+|++|+++ .+|..++.... |+.|+|++|++
T Consensus       171 l~~L~~L~L~~N~l~-~ip~~~~~~~~-L~~l~L~~Np~  207 (290)
T 1p9a_G          171 LENLDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGNPW  207 (290)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCC-CSEEECCSCCB
T ss_pred             cCCCCEEECCCCcCC-ccChhhccccc-CCeEEeCCCCc
Confidence            999999999999999 89999998876 99999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.51  E-value=1.7e-14  Score=142.60  Aligned_cols=179  Identities=19%  Similarity=0.164  Sum_probs=130.3

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCC-CCCCh-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVP-EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~-~~~~p-~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~  411 (533)
                      ..++.+++++|+++...+.....  +..++.+++..+. +..++ ..+..+.+|+... ...              +...
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~-l~~--------------n~l~  118 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTG--LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH-LDR--------------CGLQ  118 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE-CTT--------------SCCC
T ss_pred             CCCCEEECCCCccceeCHhhcCC--ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE-CCC--------------CcCC
Confidence            35777888888887544555555  6778888888876 66663 3344344443321 111              0111


Q ss_pred             ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      ++.  +.....+..|+.|+|++|.+++..+..+..+++|+.|++++|++++..+..+.. ++|+.|+|++|++++..|..
T Consensus       119 ~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          119 ELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             CCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             EEC--HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence            110  011223456899999999999877777999999999999999999554555777 99999999999999988999


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +.++++|+.|+|++|++++..+..+..+.. |+.|++++|++
T Consensus       197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~~  237 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNLSALPTEALAPLRA-LQYLRLNDNPW  237 (285)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTT-CCEEECCSSCE
T ss_pred             ccCcccccEeeCCCCcCCcCCHHHcccCcc-cCEEeccCCCc
Confidence            999999999999999999544445666665 99999999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=135.04  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            3455555555555544445566666666666666665444444555 666666666666665556666666666666666


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++++..|..+..+.. |+.|++++|++
T Consensus       138 ~N~l~~~~~~~~~~l~~-L~~L~L~~N~l  165 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHS-LSTLNLLANPF  165 (220)
T ss_dssp             TSCCCCBCTTTTTTCTT-CCEEECCSCCE
T ss_pred             CCcCCEECHHHhcCCCC-CCEEEecCcCC
Confidence            66666444555555544 66666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=6.3e-14  Score=131.79  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             CCCCcceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccC
Q 009515          407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD  480 (533)
Q Consensus       407 ~~~w~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~  480 (533)
                      .|.|.++.|......     ....++.|+|++|++++..+..+..+++|+.|++++|++++..+..+.. ++|++|+|++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            488999999765432     2234777888888887666666777777888888887777433334455 7777777777


Q ss_pred             CccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      |++++..+..+..+++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~l  136 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ-LKDLRLYQNQL  136 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCc-CCEEECCCCcc
Confidence            7777544455667777777777777777 34433 444444 77777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=1.2e-13  Score=134.01  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=111.2

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      .++.+++++|+++...+.....  +..++.+.+..+.+..++.+.                              +    
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~------------------------------~----   79 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRG--LTKLTWLNLDYNQLQTLSAGV------------------------------F----   79 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSCCCCCCTTT------------------------------T----
T ss_pred             CCCEEEccCCCcCccCHhHhcC--cccCCEEECCCCcCCccCHhH------------------------------h----
Confidence            4566777777776433334444  566777777666554332210                              0    


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                            ..+..|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..|..++.
T Consensus        80 ------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  153 (251)
T 3m19_A           80 ------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK  153 (251)
T ss_dssp             ------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence                  11234788999999998777778888999999999999998544445666 88999999999999666667888


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +++|+.|+|++|++++..|..+..+.. |+.|++++|++
T Consensus       154 l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~  191 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQSVPHGAFDRLGK-LQTITLFGNQF  191 (251)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSCCB
T ss_pred             CcCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCCce
Confidence            999999999999998544445666655 89999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.47  E-value=5.2e-14  Score=155.10  Aligned_cols=114  Identities=16%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             CCCCCceeEEEEEEeCCCCCccc-----------------cchhhh--ccCCCCEEEccCCCCCCCCCCccCC-CCccEE
Q 009515          417 PNKDETAVVISQIDLGSQGLKGY-----------------ISDKIS--LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL  476 (533)
Q Consensus       417 ~~~~~~~~~L~~L~Ls~n~l~g~-----------------~p~~l~--~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L  476 (533)
                      +...+.+..|+.|+|++|.++|.                 +|+.++  ++++|++|++++|++.|.+|..++. ++|+.|
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            33355567789999999999986                 899988  9999999999999999999999998 999999


Q ss_pred             EccCCc-ccc-CCCccCCCC------cCCCEEEeecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515          477 DLSDNQ-FTG-SIPDSLTSS------SKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       477 ~Ls~N~-l~g-~iP~~~~~l------~~L~~L~L~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++|+ ++| .+|..++.+      ++|+.|+|++|+++ .+|.  .++.+.. |+.|++++|++
T Consensus       279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L~~N~l  342 (636)
T 4eco_A          279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLECLYNQL  342 (636)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEECCSCCC
T ss_pred             ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeCcCCcC
Confidence            999998 998 889888776      88999999999998 8888  7888776 89999998876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=1.8e-14  Score=143.89  Aligned_cols=179  Identities=16%  Similarity=0.137  Sum_probs=135.2

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE--QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~--~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~  411 (533)
                      ..++.+++++|.+. .+++....  +..++.+.+..+.+..++.  .+..+.+|+... ...              +...
T Consensus        78 ~~L~~L~Ls~n~i~-~l~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~-l~~--------------n~l~  139 (306)
T 2z66_A           78 TSLKYLDLSFNGVI-TMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISH--------------THTR  139 (306)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEET--CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE-CTT--------------SCCE
T ss_pred             cccCEEECCCCccc-cChhhcCC--CCCCCEEECCCCcccccccchhhhhccCCCEEE-CCC--------------CcCC
Confidence            46778888888887 56666655  7788888888887665553  233333332211 110              0111


Q ss_pred             ceeecCCCCCceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc
Q 009515          412 GITCHPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD  489 (533)
Q Consensus       412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~  489 (533)
                      ++.  +.....+..|+.|+|++|.+.+ .+|..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..+.
T Consensus       140 ~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  217 (306)
T 2z66_A          140 VAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  217 (306)
T ss_dssp             ECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred             ccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence            110  1112234568999999999987 68889999999999999999999777888888 9999999999999977777


Q ss_pred             cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .+..+++|+.|+|++|++++..|..+..+..+|+.|++++|++
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            8999999999999999999888888888764599999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.46  E-value=5.5e-14  Score=138.84  Aligned_cols=180  Identities=16%  Similarity=0.133  Sum_probs=135.3

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~-p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      .++.+++++|+++...+.....  +..++.+.+..+.+..+ |..+..+.+|+... +..    +.         ....+
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~----n~---------~l~~~   96 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLD-LSD----NA---------QLRSV   96 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCS----CT---------TCCCC
T ss_pred             CceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcCCccCCCEEe-CCC----CC---------Ccccc
Confidence            5678889999998443344555  77889999988887766 44444444443321 111    00         00000


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      .  +.....+..|+.|+|++|.+.+..+..+..+++|++|++++|++++..+..+.. ++|+.|+|++|++++..+..+.
T Consensus        97 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  174 (285)
T 1ozn_A           97 D--PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (285)
T ss_dssp             C--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             C--HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence            0  111223346899999999999888899999999999999999999655566777 9999999999999966666799


Q ss_pred             CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .+++|+.|+|++|++++..|..+..+.. |+.|++++|++.
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~  214 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHPHAFRDLGR-LMTLYLFANNLS  214 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCS
T ss_pred             CccccCEEECCCCcccccCHhHccCccc-ccEeeCCCCcCC
Confidence            9999999999999999877888888776 999999999873

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.45  E-value=3e-14  Score=142.21  Aligned_cols=157  Identities=17%  Similarity=0.125  Sum_probs=100.3

Q ss_pred             eeeEeecCCceEEEEecc--cchhhhhhccccccccCCCCCCChh-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515          335 HYVAKNLSSTELTVKLVP--VVGAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~--~~~~~iLn~lEi~~l~~~~~~~~p~-~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~  411 (533)
                      .++.+++++|+++ .+++  ....  +..++.+.+..+.+...+. .+..+.+|+... ...              +...
T Consensus       102 ~L~~L~l~~n~l~-~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~--------------n~l~  163 (306)
T 2z66_A          102 QLEHLDFQHSNLK-QMSEFSVFLS--LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-MAG--------------NSFQ  163 (306)
T ss_dssp             TCCEEECTTSEEE-SSTTTTTTTT--CTTCCEEECTTSCCEECSTTTTTTCTTCCEEE-CTT--------------CEEG
T ss_pred             CCCEEECCCCccc-ccccchhhhh--ccCCCEEECCCCcCCccchhhcccCcCCCEEE-CCC--------------Cccc
Confidence            5677788888776 3332  2333  6677777777776543332 222222222211 100              1111


Q ss_pred             ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      +. -.+.....+..|+.|+|++|.+++..|..+..+++|+.|++++|++++..+..+.. ++|+.|+|++|++++..|..
T Consensus       164 ~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          164 EN-FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GG-EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cc-cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            10 01112233455788888888888777888888888888888888888555556666 88888888888888888888


Q ss_pred             CCCCc-CCCEEEeecccCccc
Q 009515          491 LTSSS-KLQLVLLNNNLLEGR  510 (533)
Q Consensus       491 ~~~l~-~L~~L~L~~N~l~g~  510 (533)
                      +..++ +|+.|+|++|++++.
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECS
T ss_pred             HHhhhccCCEEEccCCCeecc
Confidence            88874 888888888888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=1.2e-13  Score=135.57  Aligned_cols=108  Identities=20%  Similarity=0.165  Sum_probs=88.2

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|+|
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence            34788999999998777777888999999999999998555555667 88999999999999776667788899999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|++++..|..+..+.. |+.|++++|++
T Consensus       189 ~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~  217 (272)
T 3rfs_A          189 YQNQLKSVPDGVFDRLTS-LQYIWLHDNPW  217 (272)
T ss_dssp             CSSCCSCCCTTTTTTCTT-CCEEECCSSCB
T ss_pred             CCCcCCccCHHHHhCCcC-CCEEEccCCCc
Confidence            999998655555666665 89999999876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=8.2e-14  Score=136.66  Aligned_cols=176  Identities=23%  Similarity=0.287  Sum_probs=124.0

Q ss_pred             eeeEeecCCceEEEEecc-cchhhhhhccccccccCCCCCCChhHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQV-IAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~-~~~~~iLn~lEi~~l~~~~~~~~p~~~-~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      .++.+++++|+++ .+++ ....  +..++.+.+..+.+..++..+ ..+..|+... ...    +          ....
T Consensus        38 ~l~~L~l~~n~l~-~~~~~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~-l~~----n----------~l~~   99 (270)
T 2o6q_A           38 DTKKLDLQSNKLS-SLPSKAFHR--LTKLRLLYLNDNKLQTLPAGIFKELKNLETLW-VTD----N----------KLQA   99 (270)
T ss_dssp             TCSEEECCSSCCS-CCCTTSSSS--CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE-CCS----S----------CCCC
T ss_pred             CCCEEECcCCCCC-eeCHHHhcC--CCCCCEEECCCCccCeeChhhhcCCCCCCEEE-CCC----C----------cCCc
Confidence            3556677777766 3333 3444  667777777777776666543 2233333221 111    0          0000


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                      +.  ......+..|+.|+|++|.+++..+..+..+++|+.|++++|.+++..+..+.. ++|+.|+|++|++++..+..+
T Consensus       100 ~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  177 (270)
T 2o6q_A          100 LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF  177 (270)
T ss_dssp             CC--TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CC--HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence            00  001122346899999999999888888999999999999999999544445677 999999999999997666678


Q ss_pred             CCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          492 TSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       492 ~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      .++++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus       178 ~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~  217 (270)
T 2o6q_A          178 DKLTELKTLKLDNNQLK-RVPEGAFDSLEK-LKMLQLQENPW  217 (270)
T ss_dssp             TTCTTCCEEECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred             ccCCCcCEEECCCCcCC-cCCHHHhccccC-CCEEEecCCCe
Confidence            99999999999999999 56655 555555 99999999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.43  E-value=1.8e-13  Score=130.21  Aligned_cols=88  Identities=23%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            34555666666665555555556666666666666666555555555 56666666666666555555666666666666


Q ss_pred             ecccCcccC
Q 009515          503 NNNLLEGRV  511 (533)
Q Consensus       503 ~~N~l~g~l  511 (533)
                      ++|.+.+..
T Consensus       161 ~~N~l~c~c  169 (220)
T 2v70_A          161 LANPFNCNC  169 (220)
T ss_dssp             CSCCEECSG
T ss_pred             cCcCCcCCC
Confidence            666655433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=2.2e-14  Score=162.33  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCC-CCC-CCCCccCC-C-------CccEEEccCCccccCCCc--
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGG-TLPSGLGQ-Q-------SLVRLDLSDNQFTGSIPD--  489 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g-~iP~~l~~-~-------~L~~L~Ls~N~l~g~iP~--  489 (533)
                      .+..|+.|+|++|.+.+.+|..+++|++|+.|+|++|+ ++| .+|..++. .       +|+.|+|++|+++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            34456666666666666666666666666666666665 665 55554433 3       5666666666666 5555  


Q ss_pred             cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .++++++|+.|+|++|+++ .+| .+..+.. |+.|+|++|++
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l  607 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQI  607 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCC
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCcc
Confidence            5555556666666655555 555 4444443 55555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.40  E-value=5.8e-13  Score=136.37  Aligned_cols=134  Identities=19%  Similarity=0.143  Sum_probs=64.7

Q ss_pred             CCCCCCCCCCCCCCcceeecCCCCCce-----eEEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC
Q 009515          397 WNGDPCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ  470 (533)
Q Consensus       397 w~gdpc~~~~~~~w~gv~c~~~~~~~~-----~~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~  470 (533)
                      .....|...+.|.+..+.|........     ..++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..+..
T Consensus         7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   86 (361)
T 2xot_A            7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP   86 (361)
T ss_dssp             CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence            344567666667777788865443211     1245556666655544444444 5555555555555555333333444


Q ss_pred             -CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCC
Q 009515          471 -QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       471 -~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                       ++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+.. |+.|+|++|+
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~  147 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQ  147 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSC
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc-CCEEECCCCc
Confidence             45555555555554333334444444444444444444322333333332 4444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.39  E-value=1.1e-13  Score=151.31  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=94.5

Q ss_pred             ceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCE
Q 009515          422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL  499 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~  499 (533)
                      .+..|+.|++++|.+.+ .+|..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++.+|..+.++++|+.
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            44568889999999887 47888889999999999999998877888888 89999999999999888888999999999


Q ss_pred             EEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          500 VLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       500 L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |+|++|+++ .+|..+..+.++|+.|++++|++
T Consensus       526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             EECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred             EECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence            999999998 78888877765589999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.39  E-value=2.4e-13  Score=134.96  Aligned_cols=172  Identities=22%  Similarity=0.192  Sum_probs=127.5

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~-~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      .+..+++++++++ .+|+...    ..++.+.+..+.+..++. .+..+..|+... +..              +...++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~--------------n~l~~~   70 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN-LDR--------------AELTKL   70 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE-CTT--------------SCCCEE
T ss_pred             CccEEECCCCCCC-cCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE-CCC--------------CccCcc
Confidence            3556777777776 5555443    467888888888776654 344444443321 111              112222


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      ...    ..+..|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..+..+.
T Consensus        71 ~~~----~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  145 (290)
T 1p9a_G           71 QVD----GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT  145 (290)
T ss_dssp             ECC----SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cCC----CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence            211    23456899999999998 78888999999999999999999665667888 9999999999999976666788


Q ss_pred             CCcCCCEEEeecccCcccCchhHH-hcccCCcEEEccCCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELY-SIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~-~l~~~L~~L~ls~N~l~  533 (533)
                      .+++|+.|+|++|+++ .+|...+ .+.. |+.|+|++|+|.
T Consensus       146 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~-L~~L~L~~N~l~  185 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLT-ELPAGLLNGLEN-LDTLLLQENSLY  185 (290)
T ss_dssp             TCTTCCEEECTTSCCS-CCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred             cccCCCEEECCCCcCC-ccCHHHhcCcCC-CCEEECCCCcCC
Confidence            9999999999999999 7777664 4554 999999999873

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.39  E-value=2.9e-13  Score=135.66  Aligned_cols=177  Identities=20%  Similarity=0.187  Sum_probs=124.7

Q ss_pred             eeeeeEeecCCceEEEEecccchhhhh-----hccccccccCCCCCCCh-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009515          333 SWHYVAKNLSSTELTVKLVPVVGAALI-----SGLENYALVPNDLSTVP-EQVIAMRALKESLRVPDRMGWNGDPCAPTN  406 (533)
Q Consensus       333 ~~~l~~l~l~~n~L~~~l~~~~~~~iL-----n~lEi~~l~~~~~~~~p-~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~  406 (533)
                      ...++.+++++|+++.. |+..+.  +     ..++.+.+..+.+..++ ..+..+.+|+... ...             
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~--l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-Ls~-------------  182 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAE--LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD-LSD-------------  182 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHH--HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE-CCS-------------
T ss_pred             CCCccEEEccCCCCcch-hHHHHH--HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE-CCC-------------
Confidence            34678888899988744 555544  3     78888899888877666 3333333333211 111             


Q ss_pred             CCCCcceeec--CCCCCceeEEEEEEeCCCCCcc--ccc-hhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEcc
Q 009515          407 WDAWEGITCH--PNKDETAVVISQIDLGSQGLKG--YIS-DKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLS  479 (533)
Q Consensus       407 ~~~w~gv~c~--~~~~~~~~~L~~L~Ls~n~l~g--~~p-~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls  479 (533)
                       +...+....  ......+..|+.|+|++|++++  .++ ..+..+++|+.|++++|++++.+|. .+.. ++|+.|+|+
T Consensus       183 -N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          183 -NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             -CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             -CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence             111111000  0001234568999999999983  233 3456889999999999999987764 4445 999999999


Q ss_pred             CCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       480 ~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +|+++ .+|..+.  ++|+.|+|++|+++ .+|. +..+.. |+.|++++|++.
T Consensus       262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~-L~~L~L~~N~l~  309 (312)
T 1wwl_A          262 FTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQ-VGNLSLKGNPFL  309 (312)
T ss_dssp             TSCCS-SCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCE-EEEEECTTCTTT
T ss_pred             CCccC-hhhhhcc--CCceEEECCCCCCC-CChh-HhhCCC-CCEEeccCCCCC
Confidence            99999 8998887  89999999999999 4577 777776 999999999974

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=8.5e-13  Score=125.46  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=94.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ..|+.|+|++|.+++..|..|.++++|+.|+|++|+++ .+|.. +.. ++|+.|+|++|++++..|..+..+++|+.|+
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence            35889999999999988999999999999999999999 66665 456 9999999999999988899999999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|++++..+..+..+.. |+.|+|++|++
T Consensus       135 L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~~  164 (220)
T 2v9t_B          135 LYDNKLQTIAKGTFSPLRA-IQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCSCCCTTTTTTCTT-CCEEECCSSCE
T ss_pred             CCCCcCCEECHHHHhCCCC-CCEEEeCCCCc
Confidence            9999999544445666665 99999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.38  E-value=1.9e-13  Score=149.32  Aligned_cols=181  Identities=15%  Similarity=0.048  Sum_probs=138.9

Q ss_pred             eeeeEeecCCceEEEEe--cccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515          334 WHYVAKNLSSTELTVKL--VPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE  411 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l--~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~  411 (533)
                      ..++.+++++|++++.-  +.....  +..++.+.+..+.+..+|..+..+.+|+... ...              +...
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~-l~~--------------n~l~  412 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLG--TNSLRHLDLSFNGAIIMSANFMGLEELQHLD-FQH--------------STLK  412 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHC--CSCCCEEECCSCSEEEECCCCTTCTTCCEEE-CTT--------------SEEE
T ss_pred             CCCCEEECcCCccCCCcchhhhhcc--CCcccEeECCCCccccchhhccCCCCCCeeE-CCC--------------CccC
Confidence            35778889999888542  444444  6778888888887766765554444443322 111              0001


Q ss_pred             ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCC-CCCccCC-CCccEEEccCCccccCCCc
Q 009515          412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ-QSLVRLDLSDNQFTGSIPD  489 (533)
Q Consensus       412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~-~~L~~L~Ls~N~l~g~iP~  489 (533)
                      ++.. ......+..|+.|++++|.+.+.+|..+..+++|+.|++++|.+++. +|..+.. ++|+.|+|++|++++..|.
T Consensus       413 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          413 RVTE-FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             STTT-TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CccC-hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            1000 01122344689999999999999999999999999999999999984 7888888 9999999999999999999


Q ss_pred             cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .+.++++|+.|+|++|++++..|..+..+.. |+.|++++|+|.
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~  534 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS-LSTLDCSFNRIE  534 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCEEGGGTTTCTT-CCEEECTTSCCC
T ss_pred             hhcccccCCEEECCCCcCCCcCHHHccCCCc-CCEEECCCCcCc
Confidence            9999999999999999999888988988876 999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=4.5e-13  Score=142.86  Aligned_cols=105  Identities=19%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             eeEEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L  500 (533)
                      ++.|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. ... ++|+.|+|++|++++ +|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            45688888888888887777776 788888888888888744 33 234 888888888888885 44457888888888


Q ss_pred             EeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++|+++ .+|..+..+.. |+.|++++|++
T Consensus       220 ~Ls~N~l~-~lp~~l~~l~~-L~~L~l~~N~l  249 (487)
T 3oja_A          220 SLRNNKLV-LIEKALRFSQN-LEHFDLRGNGF  249 (487)
T ss_dssp             ECTTSCCC-EECTTCCCCTT-CCEEECTTCCB
T ss_pred             EecCCcCc-ccchhhccCCC-CCEEEcCCCCC
Confidence            88888888 57877776665 88888888876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=4.2e-13  Score=141.58  Aligned_cols=107  Identities=18%  Similarity=0.221  Sum_probs=92.8

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L  500 (533)
                      .+..|+.|+|++|++++. | .+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus       194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            345689999999999854 3 5889999999999999999888888888 999999999999998889999999999999


Q ss_pred             EeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          501 LLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       501 ~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++|+++ .+|.. +..+.. |+.|+|++|++
T Consensus       272 ~L~~N~l~-~~~~~~~~~l~~-L~~L~L~~Np~  302 (452)
T 3zyi_A          272 NLAHNNLS-SLPHDLFTPLRY-LVELHLHHNPW  302 (452)
T ss_dssp             ECCSSCCS-CCCTTSSTTCTT-CCEEECCSSCE
T ss_pred             ECCCCcCC-ccChHHhccccC-CCEEEccCCCc
Confidence            99999999 56655 455554 99999999985

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=6.3e-13  Score=139.74  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=93.2

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L  500 (533)
                      .+..|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus       183 ~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence            4556899999999998 455 4889999999999999999877888888 999999999999998889999999999999


Q ss_pred             EeecccCcccCchhH-HhcccCCcEEEccCCCC
Q 009515          501 LLNNNLLEGRVPEEL-YSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       501 ~L~~N~l~g~lP~~l-~~l~~~L~~L~ls~N~l  532 (533)
                      +|++|+++ .+|... ..+. +|+.|+|++|++
T Consensus       261 ~L~~N~l~-~~~~~~~~~l~-~L~~L~L~~Np~  291 (440)
T 3zyj_A          261 NLAHNNLT-LLPHDLFTPLH-HLERIHLHHNPW  291 (440)
T ss_dssp             ECTTSCCC-CCCTTTTSSCT-TCCEEECCSSCE
T ss_pred             ECCCCCCC-ccChhHhcccc-CCCEEEcCCCCc
Confidence            99999999 566554 4555 499999999985

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.36  E-value=2.1e-12  Score=125.07  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=69.3

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            345666666666666666666666667777777777776444444555 6777777777777744444566677777777


Q ss_pred             eecccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPE-ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .+|. .+..+.. |+.|+|++|+|
T Consensus       138 Ls~N~l~-~~~~~~~~~l~~-L~~L~L~~N~l  167 (251)
T 3m19_A          138 LNTNQLQ-SIPAGAFDKLTN-LQTLSLSTNQL  167 (251)
T ss_dssp             CCSSCCC-CCCTTTTTTCTT-CCEEECCSSCC
T ss_pred             CcCCcCC-ccCHHHcCcCcC-CCEEECCCCcC
Confidence            7777777 3443 4555554 77777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.35  E-value=6.1e-13  Score=134.35  Aligned_cols=106  Identities=19%  Similarity=0.304  Sum_probs=82.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|.+++..+..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            5777888888888777778888888888888888888666667777 88888888888888 788888888888888888


Q ss_pred             cccCcccCch-hHHhc-----ccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPE-ELYSI-----GVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~-~l~~l-----~~~L~~L~ls~N~l  532 (533)
                      +|+++ .+|. .+...     ...|+.|++++|++
T Consensus       273 ~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             SSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             CCCCC-ccChhHccccccccccccccceEeecCcc
Confidence            88888 4443 33332     22377888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.35  E-value=5.3e-13  Score=134.63  Aligned_cols=192  Identities=16%  Similarity=0.180  Sum_probs=123.8

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCC-CCCCCCCCCCCCc
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWN-GDPCAPTNWDAWE  411 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~-gdpc~~~~~~~w~  411 (533)
                      ..++.+++++|+++ .++....    ..++.+.+..+.+..++.+ +..+.+++......+..... ..+..-.......
T Consensus       100 ~~L~~L~Ls~n~l~-~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          100 VKLERLYLSKNQLK-ELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTCCEEECCSSCCS-BCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             CCCCEEECCCCcCC-ccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            35778888888776 5554432    4677777877777766654 23333333221111100000 0000000000111


Q ss_pred             ceeecCCCC-----CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcccc
Q 009515          412 GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG  485 (533)
Q Consensus       412 gv~c~~~~~-----~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g  485 (533)
                      .+.......     .....|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.. ++|+.|+|++|+++ 
T Consensus       175 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  253 (330)
T 1xku_A          175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  253 (330)
T ss_dssp             EEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             EEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence            111111111     11135888999999999888889999999999999999999766667777 99999999999999 


Q ss_pred             CCCccCCCCcCCCEEEeecccCcccCchhHH-hc-----ccCCcEEEccCCCC
Q 009515          486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELY-SI-----GVHGGAFEYVKTPN  532 (533)
Q Consensus       486 ~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~-~l-----~~~L~~L~ls~N~l  532 (533)
                      .+|..+..+++|+.|+|++|+++ .+|...+ ..     ...|+.|++++|++
T Consensus       254 ~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          254 KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcc
Confidence            88989999999999999999998 5554433 21     13478999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.34  E-value=3.9e-13  Score=137.03  Aligned_cols=192  Identities=15%  Similarity=0.134  Sum_probs=122.7

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCCCcc
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGD-PCAPTNWDAWEG  412 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gd-pc~~~~~~~w~g  412 (533)
                      .++.+++++|+++...+.....  +..++.+++..+.+..+|.+ +..+.+|+......+...-... ... ........
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~~l~~L~~  153 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQI  153 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSC-TTCTTCCE
T ss_pred             CCCEEECCCCccCccCHhhcCC--CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhh-ccCCCCcE
Confidence            4566666666666433334444  56666666666666666654 3334444332211111000000 000 00001111


Q ss_pred             eeec---------CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCC
Q 009515          413 ITCH---------PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDN  481 (533)
Q Consensus       413 v~c~---------~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N  481 (533)
                      +...         +.....+..|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..  ++|+.|+|++|
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESC
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCC
Confidence            1111         112344567999999999999888899999999999999999986 66655443  88999999999


Q ss_pred             ccccC-------------------------------CCccCCCCcCCCEEEeecccCcccCchhH-HhcccCCcEEEccC
Q 009515          482 QFTGS-------------------------------IPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAFEYVK  529 (533)
Q Consensus       482 ~l~g~-------------------------------iP~~~~~l~~L~~L~L~~N~l~g~lP~~l-~~l~~~L~~L~ls~  529 (533)
                      ++++.                               +|+.+.++++|+.|+|++|+++ .+|..+ ..+.. |+.|++++
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~-L~~L~L~~  310 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS-LQKIWLHT  310 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC-CCEEEeeC
Confidence            98864                               3445677889999999999999 899886 56555 99999999


Q ss_pred             CCC
Q 009515          530 TPN  532 (533)
Q Consensus       530 N~l  532 (533)
                      |++
T Consensus       311 N~~  313 (353)
T 2z80_A          311 NPW  313 (353)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=1.2e-12  Score=137.90  Aligned_cols=110  Identities=23%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV  500 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L  500 (533)
                      .+..|+.|+|++|.+.+..|..+..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  376 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL  376 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence            4456888999999998888888889999999999999998766777777 899999999999998888889999999999


Q ss_pred             EeecccCcccCchh-HHhcccCCcEEEccCCCCC
Q 009515          501 LLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       501 ~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l~  533 (533)
                      +|++|+++ .+|.. +..+.. |+.|++++|++.
T Consensus       377 ~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~l~  408 (455)
T 3v47_A          377 ALDTNQLK-SVPDGIFDRLTS-LQKIWLHTNPWD  408 (455)
T ss_dssp             ECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCBC
T ss_pred             ECCCCccc-cCCHhHhccCCc-ccEEEccCCCcc
Confidence            99999998 46654 455554 899999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=4.8e-13  Score=140.66  Aligned_cols=104  Identities=24%  Similarity=0.281  Sum_probs=47.9

Q ss_pred             EEEEEeCCCCCcccc-chhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          426 ISQIDLGSQGLKGYI-SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      |+.|+|++|...+.+ +..|.++++|+.|++++|+++ .+|. +.. ++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI  239 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence            444555542222222 223445555555555555554 3332 333 455555555555554444455555555555555


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++++..|..+..+.. |+.|+|++|+|
T Consensus       240 ~n~l~~~~~~~~~~l~~-L~~L~L~~N~l  267 (440)
T 3zyj_A          240 QSQIQVIERNAFDNLQS-LVEINLAHNNL  267 (440)
T ss_dssp             TCCCCEECTTSSTTCTT-CCEEECTTSCC
T ss_pred             CCceeEEChhhhcCCCC-CCEEECCCCCC
Confidence            55555333333444333 55555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.33  E-value=1.2e-12  Score=137.74  Aligned_cols=132  Identities=17%  Similarity=0.160  Sum_probs=88.8

Q ss_pred             CCCCCCCCCCCcceeecCCCCCce----eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCc
Q 009515          400 DPCAPTNWDAWEGITCHPNKDETA----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSL  473 (533)
Q Consensus       400 dpc~~~~~~~w~gv~c~~~~~~~~----~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L  473 (533)
                      +||...+.|....+.|........    ..|+.|+|++|.+++..|..+..+++|++|++++|.+.+.++. .+.. ++|
T Consensus         2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A            2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence            466554334444477875543222    3578888888888877788888888888888888888766644 4555 778


Q ss_pred             cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh--HHhcccCCcEEEccCCCC
Q 009515          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~--l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+|++|++++..|..++++++|++|+|++|++++.+|..  +..+.. |+.|++++|++
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l  141 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNI  141 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT-CCEEECCSSBC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc-CCEEECCCCcc
Confidence            88888888887777777777777777777777777655554  555554 77777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.33  E-value=1.9e-12  Score=133.73  Aligned_cols=191  Identities=17%  Similarity=0.140  Sum_probs=121.0

Q ss_pred             eeeeEeecCCceEEEEecccc-hhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCC-CCCCCCCCCC----
Q 009515          334 WHYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMG-WNGDPCAPTN----  406 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~-~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~-w~gdpc~~~~----  406 (533)
                      ..++.+++++|+++ .+++.. ..  +..++.+.+..+.+..++++ +..+.+|+......+... .....+....    
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV  193 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccC-cCCHHHhcC--CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence            35778888888887 566543 44  67788888888877666543 444445543221111100 0000000000    


Q ss_pred             -CC---------CCcceeecCCCC-----CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-
Q 009515          407 -WD---------AWEGITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-  470 (533)
Q Consensus       407 -~~---------~w~gv~c~~~~~-----~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-  470 (533)
                       .+         ....+.......     .....|+.|++++|.+++.  +.+..+++|+.|++++|.+++..|..+.. 
T Consensus       194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence             00         001111110000     0112467778888887753  56888888888888888888777888877 


Q ss_pred             CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+.. |+.|++++|++
T Consensus       272 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~-L~~L~L~~N~i  330 (390)
T 3o6n_A          272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSI  330 (390)
T ss_dssp             SSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT-CSEEECCSSCC
T ss_pred             ccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCc-CCEEECCCCcc
Confidence            88888888888888 46777778888888888888888 78887877765 88888888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.33  E-value=2.8e-12  Score=122.67  Aligned_cols=105  Identities=21%  Similarity=0.255  Sum_probs=90.5

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|++....+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            4888999999998666677899999999999999999555555677 99999999999999 899999999999999999


Q ss_pred             cccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPE-ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+++ .+|. .+..+.. |+.|++++|++
T Consensus       144 ~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~  171 (229)
T 3e6j_A          144 QNQLK-SIPHGAFDRLSS-LTHAYLFGNPW  171 (229)
T ss_dssp             SSCCC-CCCTTTTTTCTT-CCEEECTTSCB
T ss_pred             CCcCC-ccCHHHHhCCCC-CCEEEeeCCCc
Confidence            99999 5554 4566655 99999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.32  E-value=3.4e-13  Score=146.06  Aligned_cols=180  Identities=18%  Similarity=0.119  Sum_probs=127.7

Q ss_pred             eeeEeecCCceEEEEe--cccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          335 HYVAKNLSSTELTVKL--VPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l--~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      .++.+++++|+++...  +.....  +..++.+.+..+.+..++..+..+.+|+... ...              +...+
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~-l~~--------------n~l~~  410 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVITMSSNFLGLEQLEHLD-FQH--------------SNLKQ  410 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHT--CSCCCEEECCSCSEEEEEEEEETCTTCCEEE-CTT--------------SEEES
T ss_pred             CCCEEeCcCCccCccccccccccc--cCccCEEECCCCccccccccccccCCCCEEE-ccC--------------Ccccc
Confidence            4556666666665322  223333  5566666666666555554433333332211 110              00000


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCC-CCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      +.- ......++.|+.|++++|.+.+.+|..+..+++|+.|++++|.++ +.+|..+.. ++|+.|+|++|++++..|..
T Consensus       411 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  489 (570)
T 2z63_A          411 MSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  489 (570)
T ss_dssp             CTT-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ccc-hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence            000 001223456899999999999999999999999999999999998 679998988 99999999999999888999


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +..+++|+.|+|++|++++..|..+..+.. |+.|++++|++.
T Consensus       490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~~~  531 (570)
T 2z63_A          490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTNPWD  531 (570)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBC
T ss_pred             hhcccCCCEEeCCCCcCCCCCHHHhhcccC-CcEEEecCCccc
Confidence            999999999999999999666666777766 999999999863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=5.5e-12  Score=114.79  Aligned_cols=107  Identities=18%  Similarity=0.214  Sum_probs=60.7

Q ss_pred             CCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccE
Q 009515          402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR  475 (533)
Q Consensus       402 c~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~  475 (533)
                      |...+.|.|..+.|.......     ...++.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.. ++|+.
T Consensus         3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            433333666666665443221     123556666666666655666666666666666666666333333344 66666


Q ss_pred             EEccCCccccCCCccCCCCcCCCEEEeecccCc
Q 009515          476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (533)
Q Consensus       476 L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~  508 (533)
                      |+|++|++++..|..+..+++|+.|+|++|.++
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            666666666444444666666666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.32  E-value=4.7e-12  Score=124.28  Aligned_cols=177  Identities=14%  Similarity=0.095  Sum_probs=109.5

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      .++.+++++|+++...+.....  +..++.+++..+.+..++.+ +..+.+|+... ...              +...++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~--------------n~l~~~   91 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTG--------------NPIQSL   91 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTT--CTTCSEEECTTCCCCEECTTTTTTCTTCCEEE-CTT--------------CCCCEE
T ss_pred             CccEEECCCCcccccCHhHhcc--ccCCcEEECCCCcCCccCHHHccCCcCCCEEE-CCC--------------CccCcc
Confidence            3556667777766332224444  55666667666665554432 22222222111 100              001111


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCC-CCCCccCC-CCccEEEccCCccccCCCccC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                      .  ......+..|+.|++++|.+.+..+..+..+++|+.|++++|.+++ .+|..+.. ++|+.|+|++|++++..+..+
T Consensus        92 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           92 A--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             C--TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             C--hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            0  0111223457788888888887666678888888888888888875 36777777 888888888888887666667


Q ss_pred             CCCcCCC----EEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          492 TSSSKLQ----LVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       492 ~~l~~L~----~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ..+.+|+    .|++++|+++ .+|...+.... |+.|++++|++
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~-L~~L~L~~n~l  212 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LKELALDTNQL  212 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCC-EECTTSSCSCC-EEEEECCSSCC
T ss_pred             hhhhhccccceeeecCCCccc-ccCccccCCCc-ccEEECCCCce
Confidence            6666666    7888888888 55555555554 88888888876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.32  E-value=8.8e-13  Score=116.99  Aligned_cols=82  Identities=23%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccC-CCccCCCCcCCCEEEe
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-IPDSLTSSSKLQLVLL  502 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~L  502 (533)
                      .|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+.. ++|+.|++++|++++. .|..++.+++|+.|++
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            345555555555533  44455555555555555555444444443 5555555555555531 2244555555555555


Q ss_pred             ecccCc
Q 009515          503 NNNLLE  508 (533)
Q Consensus       503 ~~N~l~  508 (533)
                      ++|+++
T Consensus       121 ~~N~l~  126 (149)
T 2je0_A          121 FNCEVT  126 (149)
T ss_dssp             TTCGGG
T ss_pred             cCCccc
Confidence            555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.32  E-value=2.4e-12  Score=140.66  Aligned_cols=191  Identities=17%  Similarity=0.150  Sum_probs=123.2

Q ss_pred             eeeeEeecCCceEEEEecccc-hhhhhhccccccccCCCCCCChh-HHHHHHHHHHhcCCCCCCC-CCCCCCCCC-----
Q 009515          334 WHYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMG-WNGDPCAPT-----  405 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~-~~~iLn~lEi~~l~~~~~~~~p~-~~~~l~~lk~~~~~~~~~~-w~gdpc~~~-----  405 (533)
                      ..+..+++++|.++ .+++.. ..  +..++.+.+..+.+..+++ .+..+..|+......+... .....+...     
T Consensus       123 ~~L~~L~L~~n~l~-~l~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l  199 (597)
T 3oja_B          123 PLLTVLVLERNDLS-SLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV  199 (597)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCC-CCCHHHhcc--CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence            35777888888887 555543 44  6778888888887766554 3444555543221111100 000000000     


Q ss_pred             CCC---------CCcceeecCCCC-----CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-
Q 009515          406 NWD---------AWEGITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-  470 (533)
Q Consensus       406 ~~~---------~w~gv~c~~~~~-----~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-  470 (533)
                      ..+         ....+.+.....     .....|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..+.. 
T Consensus       200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence            000         001111111100     011247778888888876  367888889999999999998888888888 


Q ss_pred             CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       471 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+.. |+.|+|++|+|
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~-L~~L~L~~N~l  336 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSI  336 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT-CSEEECCSSCC
T ss_pred             cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC-CCEEECCCCCC
Confidence            889999999999884 6777778888999999999888 78888877766 88888888876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.31  E-value=1.7e-12  Score=141.89  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=53.9

Q ss_pred             EEEEEeCCCCCccccchh-hhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccC---CCccCCCCcCCCEE
Q 009515          426 ISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS---IPDSLTSSSKLQLV  500 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~---iP~~~~~l~~L~~L  500 (533)
                      |+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++.+.   .+..+..+++|+.|
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L  481 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL  481 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence            444445544444433322 444555555555555555444444444 5555555555555441   22344555555555


Q ss_pred             EeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++|++++..|..+..+.. |+.|++++|++
T Consensus       482 ~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l  512 (606)
T 3t6q_A          482 VLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRL  512 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTT-CCEEECCSSCC
T ss_pred             ECCCCccCccChhhhccccC-CCEEECCCCcc
Confidence            55555555444555555544 66666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.30  E-value=5.6e-12  Score=118.38  Aligned_cols=106  Identities=24%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|++++..+..+..+++|++|++++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence            4788999999999766667889999999999999999554455667 999999999999996666668899999999999


Q ss_pred             cccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+++ .+|.. +..+.. |+.|++++|++
T Consensus       133 ~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~  160 (208)
T 2o6s_A          133 QNQLK-SVPDGVFDRLTS-LQYIWLHDNPW  160 (208)
T ss_dssp             SSCCS-CCCTTTTTTCTT-CCEEECCSCCB
T ss_pred             CCccc-eeCHHHhccCCC-ccEEEecCCCe
Confidence            99999 45554 566655 99999999975

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.30  E-value=6.6e-12  Score=122.97  Aligned_cols=106  Identities=24%  Similarity=0.229  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      .++.|+|++|++++..+..|..+++|++|++++|.++ .+|.. +.. ++|+.|+|++|++++..+..+.++++|+.|+|
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            3677777777777665566777777777777777776 44443 344 66777777777666444445566666666666


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|++++..|..+..+.. |+.|++++|++
T Consensus       117 ~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l  145 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTK-LTYLSLGYNEL  145 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTT-CCEEECCSSCC
T ss_pred             CCCccCeeCHHHhCcCcC-CCEEECCCCcC
Confidence            666666333333344433 55666655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=8.5e-12  Score=114.05  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             EEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeeccc
Q 009515          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL  506 (533)
Q Consensus       428 ~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~  506 (533)
                      .+++++|++. .+|..+.  ++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..+..+.++++|+.|+|++|+
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3555555554 4444442  55666666666666554555555 566666666666664333334556666666666666


Q ss_pred             CcccCchh-HHhcccCCcEEEccCCCC
Q 009515          507 LEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       507 l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      ++ .+|.. +..+.. |+.|+|++|++
T Consensus        93 l~-~l~~~~~~~l~~-L~~L~L~~N~~  117 (174)
T 2r9u_A           93 LK-SIPRGAFDNLKS-LTHIYLYNNPW  117 (174)
T ss_dssp             CC-CCCTTTTTTCTT-CSEEECCSSCB
T ss_pred             cc-eeCHHHhccccC-CCEEEeCCCCc
Confidence            65 34443 444433 66666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=1.3e-12  Score=142.70  Aligned_cols=79  Identities=22%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             CCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEcc
Q 009515          450 LVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYV  528 (533)
Q Consensus       450 L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls  528 (533)
                      |+.|+|++|.+++  +..+.. ++|+.|+|++|++++.+|..++.+++|+.|+|++|+++ .+|..+..+.. |+.|+|+
T Consensus       234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~-L~~L~Ls  309 (597)
T 3oja_B          234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT-LKVLDLS  309 (597)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTT-CCEEECC
T ss_pred             CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCC-CcEEECC
Confidence            4444444444443  234555 77888888888888777778888888888888888887 46666655555 8888888


Q ss_pred             CCCC
Q 009515          529 KTPN  532 (533)
Q Consensus       529 ~N~l  532 (533)
                      +|++
T Consensus       310 ~N~l  313 (597)
T 3oja_B          310 HNHL  313 (597)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            8876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=6.7e-12  Score=114.25  Aligned_cols=102  Identities=22%  Similarity=0.263  Sum_probs=88.5

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      .+.|++++|+++ .+|..+  .++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            457999999999 477666  389999999999999877888888 9999999999999976666789999999999999


Q ss_pred             ccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          505 NLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       505 N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      |+++ .+|.. +..+.. |+.|+|++|++
T Consensus        88 N~l~-~~~~~~~~~l~~-L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLK-SIPRGAFDNLKS-LTHIWLLNNPW  114 (170)
T ss_dssp             SCCC-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred             CccC-EeCHHHhcCCCC-CCEEEeCCCCC
Confidence            9999 56654 666665 99999999986

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.29  E-value=1.5e-12  Score=117.93  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCC
Q 009515          421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKL  497 (533)
Q Consensus       421 ~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L  497 (533)
                      ..++.|+.|+|++|.+++.  ..+..+++|+.|++++|.+++.+|..+.. ++|+.|+|++|++++ +|  ..+..+++|
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L  122 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECL  122 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCC
Confidence            3456788999999999865  77889999999999999999777777776 899999999999984 44  678899999


Q ss_pred             CEEEeecccCcccCch----hHHhcccCCcEEEccCCCC
Q 009515          498 QLVLLNNNLLEGRVPE----ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       498 ~~L~L~~N~l~g~lP~----~l~~l~~~L~~L~ls~N~l  532 (533)
                      +.|++++|+++ .+|.    .+..+.. |+.|++++|.+
T Consensus       123 ~~L~l~~N~l~-~~~~~~~~~~~~l~~-L~~L~l~~n~~  159 (168)
T 2ell_A          123 KSLDLFNCEVT-NLNDYRESVFKLLPQ-LTYLDGYDRED  159 (168)
T ss_dssp             CEEECCSSGGG-TSTTHHHHHHTTCSS-CCEETTEETTS
T ss_pred             CEEEeeCCcCc-chHHHHHHHHHhCcc-CcEecCCCCCh
Confidence            99999999998 5555    5666665 99999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.29  E-value=3.2e-12  Score=137.05  Aligned_cols=108  Identities=23%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             eeEEEEEEeCCCCCcc--ccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccC------------
Q 009515          423 AVVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGS------------  486 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~------------  486 (533)
                      ++.|+.|+|++|++++  .+|..+..+++|+.|++++|.+++.+|.. +.. ++|+.|+|++|++++.            
T Consensus       347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L  426 (520)
T 2z7x_B          347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL  426 (520)
T ss_dssp             CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEE
T ss_pred             CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEE
Confidence            3456666666666665  44556666666666666666666545544 333 4555555555555444            


Q ss_pred             ---------CCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          487 ---------IPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       487 ---------iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                               +|..+..+++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus       427 ~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~-L~~L~l~~N~~  480 (520)
T 2z7x_B          427 DLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS-LQKIWLHTNPW  480 (520)
T ss_dssp             ECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred             ECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc-ccEEECcCCCC
Confidence                     4444445555555555555555 44444 333333 55555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.28  E-value=2.5e-12  Score=136.36  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+.+|..+....+|+.|+
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            345677777777777666666777777777777777777655556666 7777788877777777777666666888888


Q ss_pred             eecccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPE-ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .+|. .+..+.. |+.|+|++|++
T Consensus       231 l~~n~l~-~~~~~~~~~l~~-L~~L~Ls~n~l  260 (477)
T 2id5_A          231 ITHCNLT-AVPYLAVRHLVY-LRFLNLSYNPI  260 (477)
T ss_dssp             EESSCCC-SCCHHHHTTCTT-CCEEECCSSCC
T ss_pred             CcCCccc-ccCHHHhcCccc-cCeeECCCCcC
Confidence            8888888 6664 4555554 89999999876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.28  E-value=6.8e-13  Score=143.91  Aligned_cols=105  Identities=25%  Similarity=0.305  Sum_probs=77.6

Q ss_pred             eEEEEEEeCCCCCccccch-hhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      +.|+.|+|++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|
T Consensus       403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L  480 (562)
T 3a79_B          403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV  480 (562)
T ss_dssp             TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred             CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence            4566777777777764444 366677777777777777766665543 57888888888888 78877778888888888


Q ss_pred             ecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+++ .+|.. +..+.. |+.|++++|++
T Consensus       481 ~~N~l~-~l~~~~~~~l~~-L~~L~l~~N~~  509 (562)
T 3a79_B          481 ASNQLK-SVPDGVFDRLTS-LQYIWLHDNPW  509 (562)
T ss_dssp             CSSCCC-CCCTTSTTTCTT-CCCEECCSCCB
T ss_pred             CCCCCC-CCCHHHHhcCCC-CCEEEecCCCc
Confidence            888888 78877 666555 88888888876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.28  E-value=2e-12  Score=129.84  Aligned_cols=106  Identities=19%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             eeEEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|+|++|.+++..+..+. .+++|+.|++++|.++ .+|.....++|+.|+|++|+++ .+|..+..+++|+.|+
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS  220 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence            45699999999999988777774 7899999999999998 4443332289999999999999 4666699999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .+|..+..+.. |+.|++++|++
T Consensus       221 L~~N~l~-~l~~~~~~l~~-L~~L~l~~N~~  249 (317)
T 3o53_A          221 LRNNKLV-LIEKALRFSQN-LEHFDLRGNGF  249 (317)
T ss_dssp             CTTSCCC-EECTTCCCCTT-CCEEECTTCCC
T ss_pred             CcCCccc-chhhHhhcCCC-CCEEEccCCCc
Confidence            9999999 78988877766 99999999987

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=7e-12  Score=127.29  Aligned_cols=94  Identities=17%  Similarity=0.119  Sum_probs=73.2

Q ss_pred             CCccccchhhhccCCCCEEEccC-CCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCc
Q 009515          435 GLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP  512 (533)
Q Consensus       435 ~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP  512 (533)
                      +|+ .+|. |..+++|+.|+|++ |+|++..|..+.. ++|+.|+|++|+|++..|..|.+|++|+.|+|++|+|+ .+|
T Consensus        20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~   96 (347)
T 2ifg_A           20 ALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS   96 (347)
T ss_dssp             CCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred             CCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeC
Confidence            555 4666 88888888888885 8888555566777 88888888888888877778888888888888888888 667


Q ss_pred             hhHHhcccCCcEEEccCCCC
Q 009515          513 EELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       513 ~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ..++.... |+.|+|++|+|
T Consensus        97 ~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           97 WKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             STTTCSCC-CCEEECCSSCC
T ss_pred             HHHcccCC-ceEEEeeCCCc
Confidence            66666555 88888888875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=1.3e-12  Score=121.78  Aligned_cols=105  Identities=11%  Similarity=0.099  Sum_probs=92.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      +.|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++.+.+| .+..+++|+.|++
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI  166 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence            45889999999999888999999999999999999999888888888 999999999998444777 6899999999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+++ .++ .+..+.. |+.|++++|++
T Consensus       167 ~~n~i~-~~~-~l~~l~~-L~~L~l~~N~i  193 (197)
T 4ezg_A          167 QFDGVH-DYR-GIEDFPK-LNQLYAFSQTI  193 (197)
T ss_dssp             TTBCCC-CCT-TGGGCSS-CCEEEECBC--
T ss_pred             CCCCCc-ChH-HhccCCC-CCEEEeeCccc
Confidence            999999 566 6777776 99999999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=3.1e-12  Score=142.78  Aligned_cols=106  Identities=27%  Similarity=0.310  Sum_probs=88.1

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..+.. ++|+.|+|++|+|+ .+|..+++|++|+.|+
T Consensus       223 l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            345778888888887 67777888888888888888888 88888877 88888888888888 7888888888888888


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++|.|+ .+|..++.+.. |+.|+|++|+|+
T Consensus       300 L~~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~  329 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCN-LQFLGVEGNPLE  329 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTT-CCCEECTTSCCC
T ss_pred             CCCCCCC-ccChhhhcCCC-ccEEeCCCCccC
Confidence            8888887 88888877765 888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.27  E-value=3e-12  Score=139.85  Aligned_cols=219  Identities=14%  Similarity=0.063  Sum_probs=145.1

Q ss_pred             eEEEEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCCh-hHHHHHHH
Q 009515          306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVP-EQVIAMRA  384 (533)
Q Consensus       306 R~F~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p-~~~~~l~~  384 (533)
                      ..-.+.+.++.+.+...     ........++.+++++|+++ .+|+....  +..++.+.+..+.+..++ ..+..+..
T Consensus       255 ~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~-~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~  326 (606)
T 3t6q_A          255 SVESINLQKHYFFNISS-----NTFHCFSGLQELDLTATHLS-ELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPS  326 (606)
T ss_dssp             EEEEEECTTCCCSSCCT-----TTTTTCTTCSEEECTTSCCS-CCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred             ceeEEEeecCccCccCH-----HHhccccCCCEEeccCCccC-CCChhhcc--cccCCEEECccCCcCcCchhhhhccCc
Confidence            44556666655443321     11111235667777777776 66666555  666777777777665543 34444444


Q ss_pred             HHHhcCCCCCCC-CCCC----CCCC-----CCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEE
Q 009515          385 LKESLRVPDRMG-WNGD----PCAP-----TNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN  454 (533)
Q Consensus       385 lk~~~~~~~~~~-w~gd----pc~~-----~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~  454 (533)
                      |+......+... ....    .|..     ...+...++.|.+.....++.|+.|++++|.+.+..|..+..+++|+.|+
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD  406 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence            433221111000 0000    0000     00123344444344445566799999999999998899999999999999


Q ss_pred             ccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCccc---CchhHHhcccCCcEEEccC
Q 009515          455 LSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR---VPEELYSIGVHGGAFEYVK  529 (533)
Q Consensus       455 Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~---lP~~l~~l~~~L~~L~ls~  529 (533)
                      +++|.+++..|.. +.. ++|+.|++++|++++..|..++++++|+.|+|++|++++.   .+..+..+.. |+.|++++
T Consensus       407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-L~~L~Ls~  485 (606)
T 3t6q_A          407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-LEILVLSF  485 (606)
T ss_dssp             CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT-CCEEECTT
T ss_pred             CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC-ccEEECCC
Confidence            9999999877765 666 9999999999999988999999999999999999999862   2355777766 99999999


Q ss_pred             CCCC
Q 009515          530 TPNC  533 (533)
Q Consensus       530 N~l~  533 (533)
                      |++.
T Consensus       486 n~l~  489 (606)
T 3t6q_A          486 CDLS  489 (606)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            9863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.27  E-value=9.9e-12  Score=121.90  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=94.8

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.|+|++|.+++..+..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|+|
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            45889999999999888888999999999999999999666666777 99999999999999777777899999999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++|++++..|..+..+.. |+.|++++|++.
T Consensus       165 ~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~  194 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLK  194 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTT-CCEEECCSSCCS
T ss_pred             CCCCcCccCHHHhcCCcc-CCEEECCCCcCC
Confidence            999999554444566665 999999999873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.27  E-value=3e-12  Score=137.20  Aligned_cols=157  Identities=19%  Similarity=0.298  Sum_probs=115.4

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh---HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE---QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAW  410 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~---~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w  410 (533)
                      ..++.+++++|+++..++.....  +..++.+.+..+.+..++.   .+..+.+|+.. ....              +..
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L-~Ls~--------------N~l  386 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGH--LTELETLILQMNQLKELSKIAEMTTQMKSLQQL-DISQ--------------NSV  386 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCC--CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE-ECCS--------------SCC
T ss_pred             CcccEEEeECCccChhhhhhhcc--CCCCCEEEccCCccCccccchHHHhhCCCCCEE-ECCC--------------CcC
Confidence            46778899999888656666665  7788999999988876543   23333333221 1111              111


Q ss_pred             cc-eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC
Q 009515          411 EG-ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP  488 (533)
Q Consensus       411 ~g-v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP  488 (533)
                      .+ +..  .....+..|+.|++++|.+++.+|..+.  ++|+.|++++|+++ .+|..+.. ++|+.|+|++|+++ .+|
T Consensus       387 ~~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~  460 (520)
T 2z7x_B          387 SYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP  460 (520)
T ss_dssp             BCCGGG--CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred             Cccccc--chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence            11 110  0011234588999999999988887765  79999999999999 99998888 99999999999999 688


Q ss_pred             cc-CCCCcCCCEEEeecccCcccCch
Q 009515          489 DS-LTSSSKLQLVLLNNNLLEGRVPE  513 (533)
Q Consensus       489 ~~-~~~l~~L~~L~L~~N~l~g~lP~  513 (533)
                      .. +..+++|+.|+|++|++++..+.
T Consensus       461 ~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHHhccCCcccEEECcCCCCcccCCc
Confidence            76 89999999999999999976653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.26  E-value=3.9e-12  Score=134.16  Aligned_cols=178  Identities=20%  Similarity=0.236  Sum_probs=130.0

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      ..++.+++++|+++...+..+..  +..++.+++..|.+..+|.+ +..+.+|+... +..              +....
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~--------------N~l~~  161 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNG--LASLNTLELFDNWLTVIPSGAFEYLSKLRELW-LRN--------------NPIES  161 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE-CCS--------------CCCCE
T ss_pred             CCCCEEECCCCccCCcChhhccC--cccCCEEECCCCcCCccChhhhcccCCCCEEE-CCC--------------CCcce
Confidence            35778888888888544455555  77888888888887777765 22233333321 111              11111


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccc-hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      +.  ......++.|+.|+|++|...+.++ ..+.++++|+.|+|++|+++ .+| .+.. ++|+.|+|++|++++..|..
T Consensus       162 ~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~  237 (452)
T 3zyi_A          162 IP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGS  237 (452)
T ss_dssp             EC--TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred             eC--HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCccc
Confidence            11  1112334568899999854444444 46899999999999999998 556 4666 99999999999999988999


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +.++++|+.|+|++|++++..|..+..+.. |+.|+|++|+|.
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~  279 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIERNAFDGLAS-LVELNLAHNNLS  279 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCS
T ss_pred             ccCccCCCEEEeCCCcCceECHHHhcCCCC-CCEEECCCCcCC
Confidence            999999999999999999777777877776 999999999873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.26  E-value=5.7e-12  Score=137.75  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .++.|+|++|+|++..+..|.++++|++|+|++|++++..|..+.. ++|++|+|++|++++..|..|.+|++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            5788888888888776777888888888888888888544555666 888888888888875555567777778888887


Q ss_pred             cccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPE-ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+++ .+|. .++.+.. |+.|++++|++
T Consensus       133 ~N~l~-~l~~~~~~~L~~-L~~L~Ls~N~l  160 (635)
T 4g8a_A          133 ETNLA-SLENFPIGHLKT-LKELNVAHNLI  160 (635)
T ss_dssp             TSCCC-CSTTCCCTTCTT-CCEEECCSSCC
T ss_pred             CCcCC-CCChhhhhcCcc-cCeeccccCcc
Confidence            77777 3443 3555554 77777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.25  E-value=8.7e-12  Score=122.35  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|+|++|.+++..+..+..+++|+.|++++|.+++..|..+.. ++|+.|++++|++.+..+..++.+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            445777888888877666667778888888888888887666666777 8888888888888866665788888888888


Q ss_pred             eecccCcc-cCchhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEG-RVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g-~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|++++ .+|..+..+.. |+.|++++|++
T Consensus       131 l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l  161 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKI  161 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTT-CCEEECCSSCC
T ss_pred             CcCCccceecCchhhccCCC-CCEEECCCCCC
Confidence            88888874 36888888766 89999998876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.25  E-value=9.9e-12  Score=127.16  Aligned_cols=83  Identities=29%  Similarity=0.251  Sum_probs=40.2

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC----CCCcCCCE
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL----TSSSKLQL  499 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~  499 (533)
                      .|+.|+|++|.|++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|+++ .+|..+    ..+++|+.
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~  167 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML  167 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCE
Confidence            3455555555555444444555555555555555555444444444 55555555555555 233322    33455555


Q ss_pred             EEeecccCc
Q 009515          500 VLLNNNLLE  508 (533)
Q Consensus       500 L~L~~N~l~  508 (533)
                      |+|++|+++
T Consensus       168 L~L~~N~l~  176 (361)
T 2xot_A          168 LDLSSNKLK  176 (361)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCCCC
Confidence            555555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=8.6e-12  Score=135.21  Aligned_cols=180  Identities=20%  Similarity=0.184  Sum_probs=119.4

Q ss_pred             eeEeecCCceEEEEecccchhhhhhccccccccCC--------------CCCCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 009515          336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPN--------------DLSTVPEQVIAMRALKESLRVPDRMGWNGDP  401 (533)
Q Consensus       336 l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~--------------~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdp  401 (533)
                      +..+++++|+|. .+|..++.  +..++.+.+..+              ..+..|..+..+.+|+..-..... .+. + 
T Consensus       351 L~~L~Ls~n~L~-~Lp~~i~~--l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~-~-  424 (567)
T 1dce_A          351 LFRCELSVEKST-VLQSELES--CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD-D-  424 (567)
T ss_dssp             SSSCCCCHHHHH-HHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH-H-
T ss_pred             ceeccCChhhHH-hhHHHHHH--HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc-h-
Confidence            445667777776 67777666  666666555333              123455566667676654211000 000 0 


Q ss_pred             CCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccC
Q 009515          402 CAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD  480 (533)
Q Consensus       402 c~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~  480 (533)
                       .+..+..-..+...+     ...|+.|+|++|.|++ +|. ++.+++|+.|+|++|.++ .+|..++. ++|+.|+|++
T Consensus       425 -L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          425 -LRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             -HHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             -hhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence             000000000011000     0126778999999986 565 889999999999999998 88888888 9999999999


Q ss_pred             CccccCCCccCCCCcCCCEEEeecccCcccC-chhHHhcccCCcEEEccCCCCC
Q 009515          481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRV-PEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~l-P~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++++ +| .+++|++|+.|+|++|++++.. |..++.+.. |+.|+|++|+|+
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~-L~~L~L~~N~l~  546 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNSLC  546 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT-CCEEECTTSGGG
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC-CCEEEecCCcCC
Confidence            99995 77 7888999999999999998655 888888776 899999999763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=130.47  Aligned_cols=122  Identities=17%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             CcceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcc
Q 009515          410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF  483 (533)
Q Consensus       410 w~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l  483 (533)
                      |..+.|......     ....++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+.. ++|+.|+|++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            456777654322     1234667777777777666667777777777777777777555666666 6777777777776


Q ss_pred             ccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       484 ~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++..+..+.++++|+.|+|++|++++..|..+..+.. |+.|++++|++
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l  140 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDL  140 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTC
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCcc
Confidence            6433344566666666666666666555555555544 66666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=2.5e-11  Score=110.95  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCc
Q 009515          401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSL  473 (533)
Q Consensus       401 pc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L  473 (533)
                      .|...+.|....+.|.......     ...|+.|+|++|++++..|..|..+++|+.|+|++|++++ +|.. +.. ++|
T Consensus         5 ~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L   83 (174)
T 2r9u_A            5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQL   83 (174)
T ss_dssp             SSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchh
Confidence            4554445666777887654322     2458899999999999889999999999999999999995 5554 567 999


Q ss_pred             cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhH
Q 009515          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL  515 (533)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l  515 (533)
                      +.|+|++|++++..+..+..+++|+.|+|++|.+. ..+..+
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~~~  124 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECRDI  124 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBGGG
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcc-cccccH
Confidence            99999999999655556999999999999999998 555433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.24  E-value=9.3e-12  Score=137.92  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=67.3

Q ss_pred             eeEEEEEEeCCCCCccccc--------hhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCC
Q 009515          423 AVVISQIDLGSQGLKGYIS--------DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p--------~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      +..|+.|+|++|.+++..+        ..+..+++|+.|+|++|+++ .+|.. +.. ++|+.|+|++|++++..+..+.
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  581 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFN  581 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence            3446666666666664311        12566667777777777776 55543 455 7777777777777744444456


Q ss_pred             CCcCCCEEEeecccCcccCchhHH-hcccCCcEEEccCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELY-SIGVHGGAFEYVKTPN  532 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~-~l~~~L~~L~ls~N~l  532 (533)
                      ++++|+.|+|++|++++..|..+. .+.. |+.|++++|++
T Consensus       582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~l~l~~N~~  621 (680)
T 1ziw_A          582 NQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPF  621 (680)
T ss_dssp             TCTTCCEEECTTSCCCBCCHHHHHHHHTT-CSEEECTTCCC
T ss_pred             CCCCCCEEECCCCcCCccChhHhcccccc-cCEEEccCCCc
Confidence            777777777777777744444344 3443 77777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.22  E-value=3.9e-11  Score=120.84  Aligned_cols=129  Identities=19%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCc
Q 009515          400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (533)
Q Consensus       400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L  473 (533)
                      ..|...+.|.|..+.|.......     .+.++.|+|++|.+++..+..+.++++|++|++++|++++..|..+.. ++|
T Consensus        23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            34554445789999997544321     235788999999999877778999999999999999999777888888 999


Q ss_pred             cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +.|+|++|+++ .+|..+.  ++|+.|++++|++++..+..+..+.. |+.|++++|++
T Consensus       103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l  157 (330)
T 1xku_A          103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPL  157 (330)
T ss_dssp             CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCC
T ss_pred             CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcC
Confidence            99999999988 6776554  56777777777777433334444443 66666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.22  E-value=1.2e-12  Score=133.48  Aligned_cols=177  Identities=14%  Similarity=0.131  Sum_probs=121.9

Q ss_pred             eeeEeecCCceEEEEecc-cchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~-~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      .++.+++++|+++. +++ ....  +..++.+.+..+.+..++.+ +..+.+|+... ...              +...+
T Consensus        53 ~L~~L~l~~n~i~~-~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~--------------n~l~~  114 (353)
T 2z80_A           53 AVKSLDLSNNRITY-ISNSDLQR--CVNLQALVLTSNGINTIEEDSFSSLGSLEHLD-LSY--------------NYLSN  114 (353)
T ss_dssp             TCCEEECTTSCCCE-ECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CCS--------------SCCSS
T ss_pred             cCcEEECCCCcCcc-cCHHHhcc--CCCCCEEECCCCccCccCHhhcCCCCCCCEEE-CCC--------------CcCCc
Confidence            57788999999884 444 5555  77888899988887766543 33333333221 111              11111


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccc-hhhhccCCCCEEEccCCC-CCCCCCCccCC-CCccEEEccCCccccCCCc
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD  489 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p-~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~  489 (533)
                      +...  ....+..|+.|+|++|.+++..+ ..+..+++|+.|++++|+ +++..|..+.. ++|+.|++++|++++..|.
T Consensus       115 ~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          115 LSSS--WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             CCHH--HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CCHh--HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            1110  01123458889999998885433 378888999999999884 65444566777 8899999999999888888


Q ss_pred             cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .+..+++|++|++++|+++ .+|..+.....+|+.|++++|++
T Consensus       193 ~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBC
T ss_pred             HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcc
Confidence            8889999999999999887 77776655444588999998876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.22  E-value=8.6e-12  Score=134.46  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|.+++..|..+..+++|++|++++|++++..|..+.. ++|++|+|++|++++..|..++++++|++|+|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            5777777777777776777777777777777777777666666666 777777777777776555557777777777777


Q ss_pred             cccCcc-cCchhHHhcccCCcEEEccCCC
Q 009515          504 NNLLEG-RVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       504 ~N~l~g-~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +|++++ .+|..+..+.. |+.|++++|+
T Consensus       107 ~n~l~~~~~~~~~~~l~~-L~~L~L~~n~  134 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTN-LQTLRIGNVE  134 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTT-CCEEEEEESS
T ss_pred             CCcccccchhhhhhccCC-ccEEECCCCc
Confidence            777764 34555655554 6777777665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=4.8e-12  Score=125.60  Aligned_cols=99  Identities=23%  Similarity=0.341  Sum_probs=65.9

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|++++.  +.+..+++|+.|++++|++++.  +.+.. ++|+.|+|++|++++..|  +..+++|+.|+|+
T Consensus       113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~  186 (291)
T 1h6t_A          113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  186 (291)
T ss_dssp             TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence            366677777777653  4567777777777777777643  44555 777777777777774333  6777777777777


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+++ .+|. +..+.. |+.|++++|++
T Consensus       187 ~N~i~-~l~~-l~~l~~-L~~L~l~~n~i  212 (291)
T 1h6t_A          187 KNHIS-DLRA-LAGLKN-LDVLELFSQEC  212 (291)
T ss_dssp             SSCCC-BCGG-GTTCTT-CSEEEEEEEEE
T ss_pred             CCcCC-CChh-hccCCC-CCEEECcCCcc
Confidence            77777 4553 555554 77777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.21  E-value=9.1e-12  Score=124.58  Aligned_cols=167  Identities=19%  Similarity=0.229  Sum_probs=119.9

Q ss_pred             eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      ...++.+++++|+++ .+++ ...  +..++.+.+..+.+..++ .+..+..|+... ...              +...+
T Consensus        62 l~~L~~L~L~~n~i~-~~~~-~~~--l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~-l~~--------------n~l~~  121 (308)
T 1h6u_A           62 LNNLIGLELKDNQIT-DLAP-LKN--LTKITELELSGNPLKNVS-AIAGLQSIKTLD-LTS--------------TQITD  121 (308)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GTT--CCSCCEEECCSCCCSCCG-GGTTCTTCCEEE-CTT--------------SCCCC
T ss_pred             cCCCCEEEccCCcCC-CChh-Hcc--CCCCCEEEccCCcCCCch-hhcCCCCCCEEE-CCC--------------CCCCC
Confidence            346788899999887 4555 544  778888999988887765 233333332211 110              11222


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                      +..    ...++.|+.|++++|.+++..+  +..+++|+.|++++|.+++ ++. +.. ++|+.|+|++|++++ +|. +
T Consensus       122 ~~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l  191 (308)
T 1h6u_A          122 VTP----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-L  191 (308)
T ss_dssp             CGG----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-G
T ss_pred             chh----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-h
Confidence            211    2234568899999999986543  8899999999999999984 554 777 999999999999995 443 7


Q ss_pred             CCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ..+++|+.|+|++|+++ .+++ +..+.. |+.|++++|++
T Consensus       192 ~~l~~L~~L~L~~N~l~-~~~~-l~~l~~-L~~L~l~~N~i  229 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQIS-DVSP-LANTSN-LFIVTLTNQTI  229 (308)
T ss_dssp             GGCTTCCEEECTTSCCC-BCGG-GTTCTT-CCEEEEEEEEE
T ss_pred             cCCCCCCEEEccCCccC-cccc-ccCCCC-CCEEEccCCee
Confidence            88999999999999999 4553 677665 99999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.21  E-value=3.5e-12  Score=127.57  Aligned_cols=150  Identities=17%  Similarity=0.299  Sum_probs=97.9

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      ..++.+++++|+++ .++ ....  +..++.+.+..+.+..++. +..+.+|+... ..    .          +...++
T Consensus        85 ~~L~~L~L~~n~l~-~~~-~~~~--l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~-l~----~----------n~l~~~  144 (308)
T 1h6u_A           85 TKITELELSGNPLK-NVS-AIAG--LQSIKTLDLTSTQITDVTP-LAGLSNLQVLY-LD----L----------NQITNI  144 (308)
T ss_dssp             CSCCEEECCSCCCS-CCG-GGTT--CTTCCEEECTTSCCCCCGG-GTTCTTCCEEE-CC----S----------SCCCCC
T ss_pred             CCCCEEEccCCcCC-Cch-hhcC--CCCCCEEECCCCCCCCchh-hcCCCCCCEEE-CC----C----------CccCcC
Confidence            35777888888776 232 3333  6778888888888777654 33333332211 11    0          111111


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      ..    ...+..|+.|+|++|.+++. +. +..+++|+.|++++|++++ ++. +.. ++|+.|+|++|++++. + .+.
T Consensus       145 ~~----l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~-~-~l~  214 (308)
T 1h6u_A          145 SP----LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-S-PLA  214 (308)
T ss_dssp             GG----GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGT
T ss_pred             cc----ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcc-c-ccc
Confidence            11    22334588888999888854 33 8888889999999998884 443 566 8899999999988854 4 378


Q ss_pred             CCcCCCEEEeecccCcccCchh
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEE  514 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~  514 (533)
                      .+++|+.|+|++|+++ ..|..
T Consensus       215 ~l~~L~~L~l~~N~i~-~~~~~  235 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTIT-NQPVF  235 (308)
T ss_dssp             TCTTCCEEEEEEEEEE-CCCEE
T ss_pred             CCCCCCEEEccCCeee-cCCee
Confidence            8888999999999887 44543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.21  E-value=1.3e-11  Score=111.67  Aligned_cols=105  Identities=21%  Similarity=0.234  Sum_probs=92.9

Q ss_pred             eEEEEEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ..|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++.  ..+.. ++|+.|+|++|++++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34888999999998 88899899999999999999999854  67777 9999999999999987888888899999999


Q ss_pred             eecccCcccCc--hhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVP--EELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP--~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .+|  ..+..+.. |+.|++++|++
T Consensus       102 Ls~N~l~-~~~~~~~l~~l~~-L~~L~l~~N~l  132 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLKKLEC-LKSLDLFNCEV  132 (168)
T ss_dssp             CBSSSCC-SSGGGGGGSSCSC-CCEEECCSSGG
T ss_pred             ccCCccC-cchhHHHHhcCCC-CCEEEeeCCcC
Confidence            9999999 555  67777766 99999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=5.5e-12  Score=126.16  Aligned_cols=105  Identities=23%  Similarity=0.270  Sum_probs=85.4

Q ss_pred             ceeEEEEEEeCCCCCccccch----hhhccCCCCEEEccCCCCCCCCCCccCC----CCccEEEccCCccccCCCccCCC
Q 009515          422 TAVVISQIDLGSQGLKGYISD----KISLLSNLVNLNLSTNSLGGTLPSGLGQ----QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~----~l~~L~~L~~L~Ls~N~l~g~iP~~l~~----~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .++.|+.|+|++|+++. ++.    .+..+++|++|+|++|++++.+|..+..    ++|+.|+|++|+++ .+|..+. 
T Consensus       195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-  271 (310)
T 4glp_A          195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-  271 (310)
T ss_dssp             SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred             cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence            34568889999999972 333    2578899999999999999887877766    48999999999999 8888775 


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                       ++|+.|+|++|+++ .+|. +..+.. |+.|++++|+|.
T Consensus       272 -~~L~~L~Ls~N~l~-~~~~-~~~l~~-L~~L~L~~N~l~  307 (310)
T 4glp_A          272 -AKLRVLDLSSNRLN-RAPQ-PDELPE-VDNLTLDGNPFL  307 (310)
T ss_dssp             -SCCSCEECCSCCCC-SCCC-TTSCCC-CSCEECSSTTTS
T ss_pred             -CCCCEEECCCCcCC-CCch-hhhCCC-ccEEECcCCCCC
Confidence             79999999999999 4454 455555 999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.21  E-value=3.2e-11  Score=121.62  Aligned_cols=128  Identities=19%  Similarity=0.252  Sum_probs=102.4

Q ss_pred             CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCc
Q 009515          400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL  473 (533)
Q Consensus       400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L  473 (533)
                      ..|...+.|.|..+.|.......     ...++.|+|++|.+.+..+..+.++++|+.|++++|++++..|..+.. ++|
T Consensus        25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            34544444789999997554322     235889999999999887889999999999999999999777888888 999


Q ss_pred             cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      +.|+|++|+++ .+|..+.  ++|++|++++|+++ .+|.. +..+.. |+.|++++|++
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~-L~~L~l~~n~l  159 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRN-MNCIEMGGNPL  159 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSS-CCEEECCSCCC
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCcc-CCEEECCCCcc
Confidence            99999999998 7887665  78999999999998 55544 556555 89999998876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.21  E-value=6e-12  Score=126.33  Aligned_cols=99  Identities=16%  Similarity=0.191  Sum_probs=56.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|.+++. + ....+++|+.|++++|+++ .+|..+.. ++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus       170 ~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          170 TLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             TCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             cCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence            355666666666543 2 2223566666666666665 34444555 66666666666666 455556666666666666


Q ss_pred             cccCc-ccCchhHHhcccCCcEEEcc
Q 009515          504 NNLLE-GRVPEELYSIGVHGGAFEYV  528 (533)
Q Consensus       504 ~N~l~-g~lP~~l~~l~~~L~~L~ls  528 (533)
                      +|++. +.+|..+..+.. |+.|+++
T Consensus       246 ~N~~~~~~~~~~~~~~~~-L~~l~l~  270 (317)
T 3o53_A          246 GNGFHCGTLRDFFSKNQR-VQTVAKQ  270 (317)
T ss_dssp             TCCCBHHHHHHHHHTCHH-HHHHHHH
T ss_pred             CCCccCcCHHHHHhcccc-ceEEECC
Confidence            66665 555555555443 5555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=4.8e-12  Score=137.23  Aligned_cols=105  Identities=23%  Similarity=0.257  Sum_probs=89.1

Q ss_pred             CCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCC-CccCCCCcCC
Q 009515          420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKL  497 (533)
Q Consensus       420 ~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~i-P~~~~~l~~L  497 (533)
                      ...+..|+.|+|++|.|+ .+|..++.|++|+.|+|++|++++ +| .++. ++|+.|+|++|++++.. |..++.|++|
T Consensus       459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence            344556999999999999 889999999999999999999995 77 7888 99999999999999876 9999999999


Q ss_pred             CEEEeecccCcccCchh--HHhcccCCcEEEc
Q 009515          498 QLVLLNNNLLEGRVPEE--LYSIGVHGGAFEY  527 (533)
Q Consensus       498 ~~L~L~~N~l~g~lP~~--l~~l~~~L~~L~l  527 (533)
                      +.|+|++|++++..|..  +.....+|+.|++
T Consensus       536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999654422  2232334898875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.20  E-value=3.9e-11  Score=111.38  Aligned_cols=103  Identities=26%  Similarity=0.401  Sum_probs=89.2

Q ss_pred             EEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       427 ~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      +.+++++|+++ .+|..+..  +|+.|++++|++++..+.. +.. ++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56899999996 67776654  8999999999999655543 667 9999999999999998899999999999999999


Q ss_pred             ccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          505 NLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++++..|..+..+.. |+.|+|++|+|.
T Consensus        88 N~l~~~~~~~~~~l~~-L~~L~L~~N~l~  115 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQ-LKTLNLYDNQIS  115 (192)
T ss_dssp             CCCCEECSSSSTTCTT-CCEEECCSSCCC
T ss_pred             CcCCccCHHHhcCCCC-CCEEECCCCcCC
Confidence            9999766666777766 999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.20  E-value=1.4e-11  Score=132.79  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=86.7

Q ss_pred             EEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      .|+.|+|++|.+++ .+|..++++++|+.|++++|.+.+.+|. .+.. ++|+.|++++|++++.+|..++.+++|+.|+
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence            47788888888886 3567788888899999998886567764 5666 8889999999998888888888888899999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++.|.+. .+|..+.....+|+.|++++|++.
T Consensus       179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          179 LHLSESA-FLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             EECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred             cccCccc-ccchhhHhhcccccEEEccCCccc
Confidence            9888887 677776554445999999999763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.20  E-value=9.2e-12  Score=134.68  Aligned_cols=94  Identities=24%  Similarity=0.352  Sum_probs=47.5

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCC-------C
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL-------Q  498 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------~  498 (533)
                      |+.|+|++|.+++ +|.   .+++|+.|+|++|++++ +|. +. ++|+.|+|++|+++ .+|. +..  +|       +
T Consensus       142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~  210 (571)
T 3cvr_A          142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEI  210 (571)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SCCC-CC----------CCE
T ss_pred             ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-chhh-HHH--hhhcccccce
Confidence            4555555555554 333   34555555555555553 444 33 55555555555555 4554 332  44       5


Q ss_pred             EEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          499 LVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       499 ~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .|+|++|+++ .+|..++.+.. |+.|+|++|+|
T Consensus       211 ~L~Ls~N~l~-~lp~~l~~l~~-L~~L~L~~N~l  242 (571)
T 3cvr_A          211 FFRCRENRIT-HIPENILSLDP-TCTIILEDNPL  242 (571)
T ss_dssp             EEECCSSCCC-CCCGGGGGSCT-TEEEECCSSSC
T ss_pred             EEecCCCcce-ecCHHHhcCCC-CCEEEeeCCcC
Confidence            5555555555 45555555433 55555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.19  E-value=2.9e-11  Score=132.07  Aligned_cols=107  Identities=15%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|+|++..+..|.+|++|++|+|++|++++..+..+.. ++|++|+|++|++++..+..+++|++|++|+|+
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence            3556666666666555555666666666666666666333333455 666666666666664444456666666666666


Q ss_pred             cccCcc-cCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEG-RVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g-~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|++++ .+|..+..+.. |++|++++|+|
T Consensus       157 ~N~l~~~~~~~~~~~l~~-L~~L~L~~N~l  185 (635)
T 4g8a_A          157 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKI  185 (635)
T ss_dssp             SSCCCCCCCCGGGGGCTT-CCEEECCSSCC
T ss_pred             cCccccCCCchhhccchh-hhhhcccCccc
Confidence            666643 34555555544 66666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.19  E-value=9e-12  Score=132.76  Aligned_cols=168  Identities=18%  Similarity=0.112  Sum_probs=128.3

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      ..+..+++++|.+++..+  ...  +..++.++++.|.+..+|..    ..|+. +....              +.+.++
T Consensus        58 ~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~~----~~L~~-L~L~~--------------N~l~~~  114 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLVG----PSIET-LHAAN--------------NNISRV  114 (487)
T ss_dssp             TTCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEEC----TTCCE-EECCS--------------SCCCCE
T ss_pred             CCCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCCC----CCcCE-EECcC--------------CcCCCC
Confidence            357788888888886554  444  67788888888877666543    11211 11110              345556


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                      .|..     ++.|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. . ++|+.|+|++|.+++. |. +
T Consensus       115 ~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~  187 (487)
T 3oja_A          115 SCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-Q  187 (487)
T ss_dssp             EECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-C
T ss_pred             Cccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-c
Confidence            5542     24589999999999998898999999999999999999988888887 4 9999999999999965 33 4


Q ss_pred             CCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ..+++|+.|+|++|+++ .+|+.+..+.. |+.|+|++|+|+
T Consensus       188 ~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~-L~~L~Ls~N~l~  227 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAG-VTWISLRNNKLV  227 (487)
T ss_dssp             CCCTTCCEEECCSSCCC-EECGGGGGGTT-CSEEECTTSCCC
T ss_pred             ccCCCCCEEECCCCCCC-CCCHhHcCCCC-ccEEEecCCcCc
Confidence            46899999999999999 46667888766 999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.18  E-value=1.4e-11  Score=109.25  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=94.3

Q ss_pred             eEEEEEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ..++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+.. ++|+.|+|++|++++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34888999999998 88999999999999999999999955  67777 9999999999999988998888899999999


Q ss_pred             eecccCccc-CchhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGR-VPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~-lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +++|++++. .|..+..+.. |+.|++++|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~-L~~L~l~~N~l  125 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLEN-LKSLDLFNCEV  125 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTT-CCEEECTTCGG
T ss_pred             CCCCcCCChHHHHHHhhCCC-CCEEeCcCCcc
Confidence            999999952 3477888776 99999999986

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.17  E-value=8.1e-11  Score=109.38  Aligned_cols=102  Identities=20%  Similarity=0.291  Sum_probs=89.2

Q ss_pred             EEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (533)
Q Consensus       427 ~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N  505 (533)
                      +.+++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.. ++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46899999998 6776553  68999999999998 89988888 99999999999999877788999999999999999


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          506 LLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++++..|..+..+.. |+.|+|++|+|.
T Consensus        89 ~l~~i~~~~f~~l~~-L~~L~L~~N~l~  115 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKS-LRLLSLHGNDIS  115 (193)
T ss_dssp             CCCBCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred             ccCEeCHHHhCCCCC-CCEEECCCCCCC
Confidence            999655556777766 999999999873

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.17  E-value=1.4e-11  Score=118.15  Aligned_cols=105  Identities=19%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCC---EEEccCC-CCCCCCCCccCC-CCcc-EEEccCCccccCCCccCCCCcCC
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLV---NLNLSTN-SLGGTLPSGLGQ-QSLV-RLDLSDNQFTGSIPDSLTSSSKL  497 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~---~L~Ls~N-~l~g~iP~~l~~-~~L~-~L~Ls~N~l~g~iP~~~~~l~~L  497 (533)
                      +.|+.|++++|.+++ +|. +..+++|+   .|++++| ++++..+..+.. ++|+ .|++++|+++ .+|......++|
T Consensus       105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L  181 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL  181 (239)
T ss_dssp             TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred             CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence            348889999999986 665 88888888   9999999 888444445777 9999 9999999999 777765555899


Q ss_pred             CEEEeeccc-CcccCchh-HHhc-ccCCcEEEccCCCCC
Q 009515          498 QLVLLNNNL-LEGRVPEE-LYSI-GVHGGAFEYVKTPNC  533 (533)
Q Consensus       498 ~~L~L~~N~-l~g~lP~~-l~~l-~~~L~~L~ls~N~l~  533 (533)
                      +.|+|++|+ ++ .+|.. +..+ .. |+.|++++|++.
T Consensus       182 ~~L~L~~n~~l~-~i~~~~~~~l~~~-L~~L~l~~N~l~  218 (239)
T 2xwt_C          182 DAVYLNKNKYLT-VIDKDAFGGVYSG-PSLLDVSQTSVT  218 (239)
T ss_dssp             EEEECTTCTTCC-EECTTTTTTCSBC-CSEEECTTCCCC
T ss_pred             CEEEcCCCCCcc-cCCHHHhhccccC-CcEEECCCCccc
Confidence            999999995 88 56554 5555 44 999999999863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=2.7e-12  Score=143.34  Aligned_cols=91  Identities=30%  Similarity=0.369  Sum_probs=78.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|+|+ .+|..|+.|++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            3677888899888 78888899999999999999998 88888888 88999999999887 888888889999999999


Q ss_pred             cccCcccCchhHHhc
Q 009515          504 NNLLEGRVPEELYSI  518 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l  518 (533)
                      +|+|+|.+|..++.+
T Consensus       325 ~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          325 GNPLEKQFLKILTEK  339 (727)
T ss_dssp             TSCCCSHHHHHHHHH
T ss_pred             CCccCCCChHHHhhc
Confidence            999988888777553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.17  E-value=6.2e-11  Score=128.20  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      .++.+++++|+++...+.....  +..++.+++..+.+..++++ +..+                               
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~~~~l-------------------------------   75 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSL-------------------------------   75 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTT--CSSCCEEECTTCCCCEECTTTTTTC-------------------------------
T ss_pred             cccEEEccCCccCccChhHhhC--CCCceEEECCCCcCCccCcccccCc-------------------------------
Confidence            3566777777776433334444  66677777776665444322 1111                               


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcccc-CCCccC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSL  491 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g-~iP~~~  491 (533)
                                ..|+.|+|++|.+++..|..|.++++|++|++++|++++..+..++. ++|++|+|++|++++ .+|..+
T Consensus        76 ----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~  145 (570)
T 2z63_A           76 ----------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  145 (570)
T ss_dssp             ----------TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             ----------hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh
Confidence                      12444555555554444444555555555555555554222223444 455555555555443 244445


Q ss_pred             CCCcCCCEEEeecccCcccCchhHHhcccCC----cEEEccCCC
Q 009515          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHG----GAFEYVKTP  531 (533)
Q Consensus       492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L----~~L~ls~N~  531 (533)
                      +++++|++|++++|++++..|..+..+.. |    +.|++++|+
T Consensus       146 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~n~  188 (570)
T 2z63_A          146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNP  188 (570)
T ss_dssp             GGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTTCC
T ss_pred             cccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCCCC
Confidence            55555555555555554333333433332 3    444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.16  E-value=1.2e-11  Score=125.29  Aligned_cols=168  Identities=15%  Similarity=0.255  Sum_probs=113.7

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      .++.+++++|.+. .+++ ...  +..++.+.+..+.+...+. +..+.+++... ..    .          |....+.
T Consensus       178 ~L~~L~l~~n~l~-~~~~-~~~--l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~-l~----~----------n~l~~~~  237 (347)
T 4fmz_A          178 DLYSLSLNYNQIE-DISP-LAS--LTSLHYFTAYVNQITDITP-VANMTRLNSLK-IG----N----------NKITDLS  237 (347)
T ss_dssp             TCSEEECTTSCCC-CCGG-GGG--CTTCCEEECCSSCCCCCGG-GGGCTTCCEEE-CC----S----------SCCCCCG
T ss_pred             CCCEEEccCCccc-cccc-ccC--CCccceeecccCCCCCCch-hhcCCcCCEEE-cc----C----------CccCCCc
Confidence            4556667777665 3333 222  5666666766666655544 22222222211 10    0          1111111


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .    ...++.|+.|++++|.+++.  +.+..+++|+.|++++|.+++ +| .+.. ++|+.|++++|++++..|..+++
T Consensus       238 ~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          238 P----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             G----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             c----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            1    12334588999999999863  568899999999999999984 43 4666 99999999999999888888999


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|+.|++++|++++..|  +..+.+ |+.|++++|+|.
T Consensus       310 l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~l~~N~i~  346 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRP--LASLSK-MDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGG--GGGCTT-CSEESSSCC---
T ss_pred             cccCCEEEccCCccccccC--hhhhhc-cceeehhhhccc
Confidence            9999999999999995444  777766 999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.16  E-value=3.7e-11  Score=136.63  Aligned_cols=108  Identities=21%  Similarity=0.174  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCCCccccchh--hhccCCCCEEEccCCCCCCCCC-CccCC-CCccEEEccCCccccCCCccCCCC--cCCC
Q 009515          425 VISQIDLGSQGLKGYISDK--ISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS--SKLQ  498 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~--l~~L~~L~~L~Ls~N~l~g~iP-~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l--~~L~  498 (533)
                      .|+.|+|++|.+.+.++..  +.++++|+.|+|++|.+++..| ..++. ++|+.|+|++|++++..|..+..+  ++|+
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~  177 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS  177 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence            3555555555555544443  5555555555555555554433 23444 555555555555555555555544  5555


Q ss_pred             EEEeecccCcccCchhHHhccc-----CCcEEEccCCCC
Q 009515          499 LVLLNNNLLEGRVPEELYSIGV-----HGGAFEYVKTPN  532 (533)
Q Consensus       499 ~L~L~~N~l~g~lP~~l~~l~~-----~L~~L~ls~N~l  532 (533)
                      .|+|+.|.+.+.+|..+..+..     .|+.|++++|.+
T Consensus       178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW  216 (844)
T ss_dssp             CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred             eEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence            5555555555555544332211     266667766654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.16  E-value=1.3e-11  Score=134.68  Aligned_cols=100  Identities=24%  Similarity=0.347  Sum_probs=75.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      +.|+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++.  ..+.. ++|+.|+|++|++++..|  +..|++|+.|+|
T Consensus       109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence            457788888888875 2 4578888888888888888743  45666 888888888888886555  778888888888


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+++ .+| .+..+.. |+.|+|++|++
T Consensus       183 s~N~i~-~l~-~l~~l~~-L~~L~L~~N~l  209 (605)
T 1m9s_A          183 SKNHIS-DLR-ALAGLKN-LDVLELFSQEC  209 (605)
T ss_dssp             CSSCCC-BCG-GGTTCTT-CSEEECCSEEE
T ss_pred             cCCCCC-CCh-HHccCCC-CCEEEccCCcC
Confidence            888888 454 4666665 88888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.16  E-value=3.4e-11  Score=112.11  Aligned_cols=107  Identities=20%  Similarity=0.128  Sum_probs=91.8

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|++++|.+.  .++.+..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|+
T Consensus        65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            345888999999765  3457899999999999999999878888888 9999999999999988888999999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++|++.+.+| .+..+.. |+.|++++|++.
T Consensus       143 L~~n~~i~~~~-~l~~l~~-L~~L~l~~n~i~  172 (197)
T 4ezg_A          143 LSYNGAITDIM-PLKTLPE-LKSLNIQFDGVH  172 (197)
T ss_dssp             CCSCTBCCCCG-GGGGCSS-CCEEECTTBCCC
T ss_pred             ccCCCCccccH-hhcCCCC-CCEEECCCCCCc
Confidence            99998444787 5777776 999999999863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.15  E-value=3.4e-11  Score=109.96  Aligned_cols=101  Identities=21%  Similarity=0.336  Sum_probs=78.5

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccccCCCc--cCCCCcCCCEE
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV  500 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L  500 (533)
                      .|+.|+|++|.+++.  +.+..+++|+.|++++|.++ .+|+.+ .. ++|+.|+|++|+++ .+|.  .+..+++|+.|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            578888888888864  67788888888888888888 455554 55 88888888888886 6776  67788888888


Q ss_pred             EeecccCcccCchh----HHhcccCCcEEEccCCC
Q 009515          501 LLNNNLLEGRVPEE----LYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       501 ~L~~N~l~g~lP~~----l~~l~~~L~~L~ls~N~  531 (533)
                      ++++|.++ .+|..    +..+.. |+.||+++|.
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~-L~~Ld~~~n~  151 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQ-VRVLDFQKVK  151 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTT-CSEETTEECC
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCc-cceeCCCcCC
Confidence            88888887 67764    666665 8888888875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.14  E-value=7.1e-11  Score=130.78  Aligned_cols=106  Identities=17%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      .|+.|+|++|.+++..|..+.++++|+.|++++|+++ .+|. .+.. ++|++|+|++|++++..|..++++++|++|+|
T Consensus        50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            3455555555555555555555555555555555555 3333 3444 55666666666555444455555666666666


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|++++..|..+..+.. |+.|++++|++
T Consensus       129 s~n~l~~~~~~~~~~l~~-L~~L~L~~n~l  157 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLEN-LQELLLSNNKI  157 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTT-CCEEECCSSCC
T ss_pred             CCCcccccCchhhccccc-CCEEEccCCcc
Confidence            666665544544544443 66666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.13  E-value=5.6e-11  Score=114.01  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=73.9

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCC-CCCCCCCccCC-CCccEEEccC-CccccCCCccCCCCcCCCEEE
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~-~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      .++.|+|++|++++..+..+..+++|+.|++++|+ +++..+..+.. ++|+.|+|++ |++++..+..+.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            47788888888887666678888888888888886 76333345666 7888888887 888855556677778888888


Q ss_pred             eecccCcccCchhHHhcccCCc---EEEccCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGG---AFEYVKT  530 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~---~L~ls~N  530 (533)
                      +++|+++ .+|. +..+.. |+   .|++++|
T Consensus       112 l~~n~l~-~lp~-~~~l~~-L~~L~~L~l~~N  140 (239)
T 2xwt_C          112 IFNTGLK-MFPD-LTKVYS-TDIFFILEITDN  140 (239)
T ss_dssp             EEEECCC-SCCC-CTTCCB-CCSEEEEEEESC
T ss_pred             CCCCCCc-cccc-cccccc-cccccEEECCCC
Confidence            8888777 3665 444443 55   6666666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.12  E-value=7.9e-11  Score=115.01  Aligned_cols=99  Identities=20%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      +.|+.|+|++|++++ +|. +.. ++|+.|++++|++++ ++ .+.. ++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus        85 ~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEEC
Confidence            345566666666654 222 122 566666666666653 32 3444 666666666666663 33 4556666666666


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|++++.  ..+..+.. |+.|++++|++
T Consensus       158 ~~N~i~~~--~~l~~l~~-L~~L~l~~N~~  184 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKK-VNWIDLTGQKC  184 (263)
T ss_dssp             TTSCCCBC--TTSTTCCC-CCEEEEEEEEE
T ss_pred             CCCcCcch--HHhccCCC-CCEEeCCCCcc
Confidence            66666632  34444444 66666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.11  E-value=4.2e-11  Score=119.81  Aligned_cols=108  Identities=17%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCC--CCCcc--CC-CCccEEEccCCcccc--CCC-ccCCCCcC
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT--LPSGL--GQ-QSLVRLDLSDNQFTG--SIP-DSLTSSSK  496 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~--iP~~l--~~-~~L~~L~Ls~N~l~g--~iP-~~~~~l~~  496 (533)
                      .|+.|+|++|++.+..+..++.+++|+.|++++|++.|.  +|..+  .. ++|+.|+|++|++++  .++ ..+..+++
T Consensus       150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  229 (312)
T 1wwl_A          150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ  229 (312)
T ss_dssp             TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred             CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence            355566666666555555555666666666666655543  22233  33 556666666666552  122 12234556


Q ss_pred             CCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          497 LQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       497 L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |+.|+|++|++++..|...+....+|+.|++++|+|
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            666666666666444322222122366666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.10  E-value=1.6e-10  Score=119.13  Aligned_cols=153  Identities=18%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             hhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc
Q 009515          359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG  438 (533)
Q Consensus       359 Ln~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g  438 (533)
                      +..++.+.+..+.+..+|.++  +..++..-.+    +-.+        +...++.  +.....+..|+.|+|++|.+.+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~--~~~l~~L~~L----~L~~--------n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~  107 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAAL--LDSFRQVELL----NLND--------LQIEEID--TYAFAYAHTIQKLYMGFNAIRY  107 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHH--HHHCCCCSEE----ECTT--------SCCCEEC--TTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCceEEEecCCchhhCChhH--hcccccCcEE----ECCC--------CcccccC--hhhccCCCCcCEEECCCCCCCc
Confidence            567777777777777787753  2223221110    1111        1122221  1123345668999999999998


Q ss_pred             ccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHH
Q 009515          439 YISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY  516 (533)
Q Consensus       439 ~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~  516 (533)
                      ..|..+..+++|++|++++|.++ .+|..+ .. ++|+.|+|++|++++..|..+.++++|+.|++++|++++ ++  +.
T Consensus       108 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~  183 (390)
T 3o6n_A          108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LS  183 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GG
T ss_pred             CCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cc
Confidence            88888999999999999999999 677664 66 999999999999998888889999999999999999984 44  34


Q ss_pred             hcccCCcEEEccCCCC
Q 009515          517 SIGVHGGAFEYVKTPN  532 (533)
Q Consensus       517 ~l~~~L~~L~ls~N~l  532 (533)
                      .+.. |+.|++++|.+
T Consensus       184 ~l~~-L~~L~l~~n~l  198 (390)
T 3o6n_A          184 LIPS-LFHANVSYNLL  198 (390)
T ss_dssp             GCTT-CSEEECCSSCC
T ss_pred             cccc-cceeecccccc
Confidence            4444 77777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.10  E-value=9.5e-11  Score=133.26  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             CceeEEEEEEeCCCCCcccc-chhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc--CCCCcC
Q 009515          421 ETAVVISQIDLGSQGLKGYI-SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS--LTSSSK  496 (533)
Q Consensus       421 ~~~~~L~~L~Ls~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~--~~~l~~  496 (533)
                      ..+..|+.|+|++|.+.+.+ |..|.++++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++.+|..  ++++++
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            34556788888888666666 677888888888888888888777888888 88888899888888877765  888888


Q ss_pred             CCEEEeecccCcccCc-hhHHhcccCCcEEEccCCCC
Q 009515          497 LQLVLLNNNLLEGRVP-EELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       497 L~~L~L~~N~l~g~lP-~~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+|++|.+++..| ..+..+.+ |+.|+|++|++
T Consensus       125 L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~N~i  160 (844)
T 3j0a_A          125 LTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQI  160 (844)
T ss_dssp             CCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEESSCC
T ss_pred             CCEEECCCCcccccccchhHhhCCC-CCEEECCCCcC
Confidence            9999999988886544 45677665 88999988876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.10  E-value=1.4e-10  Score=126.75  Aligned_cols=94  Identities=28%  Similarity=0.305  Sum_probs=73.5

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      |+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|   .. ++|+.|+|++|+++ .+|.   .+++|+.|+|++
T Consensus       203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             hhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence            444555555544 2332   2377889999999998 466   33 88999999999999 6776   668899999999


Q ss_pred             ccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          505 NLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |+++ .+|..+..+.. |+.|+|++|+++
T Consensus       271 N~L~-~lp~~l~~l~~-L~~L~L~~N~l~  297 (622)
T 3g06_A          271 NQLT-RLPESLIHLSS-ETTVNLEGNPLS  297 (622)
T ss_dssp             SCCC-SCCGGGGGSCT-TCEEECCSCCCC
T ss_pred             CCCC-cCCHHHhhccc-cCEEEecCCCCC
Confidence            9999 89999988876 999999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.09  E-value=4.6e-11  Score=109.11  Aligned_cols=102  Identities=18%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             EEEEEEeCCCCCccccchhhhccC-CCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          425 VISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      .|+.|++++|+++. ++. +..+. +|+.|++++|.+++ + ..+.. ++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus        20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            47788888888884 443 55554 88888888888884 3 56666 88888888888888543344478888888888


Q ss_pred             ecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|+++ .+|.  .+..+.. |+.|++++|++
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~-L~~L~l~~N~i  125 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKS-LTYLCILRNPV  125 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTT-CCEEECCSSGG
T ss_pred             CCCcCC-cchhhHhhhcCCC-CCEEEecCCCC
Confidence            888886 6776  6666665 88888888876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.09  E-value=1.6e-10  Score=125.19  Aligned_cols=102  Identities=22%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      ++.|+|++|.+++..+..|.++++|+.|++++|++++..|..+.. ++|++|+|++|+++ .+|..  .+++|++|+|++
T Consensus        54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~  130 (562)
T 3a79_B           54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSF  130 (562)
T ss_dssp             CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCS
T ss_pred             cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCC
Confidence            444555555554444444455555555555555554444444444 44555555555544 34433  444455555555


Q ss_pred             ccCcc-cCchhHHhcccCCcEEEccCCC
Q 009515          505 NLLEG-RVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       505 N~l~g-~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      |++++ .+|..+..+.+ |+.|++++|+
T Consensus       131 N~l~~l~~p~~~~~l~~-L~~L~L~~n~  157 (562)
T 3a79_B          131 NDFDVLPVCKEFGNLTK-LTFLGLSAAK  157 (562)
T ss_dssp             SCCSBCCCCGGGGGCTT-CCEEEEECSB
T ss_pred             CCccccCchHhhcccCc-ccEEecCCCc
Confidence            54442 22344444433 4445544444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.09  E-value=8.7e-11  Score=118.96  Aligned_cols=168  Identities=17%  Similarity=0.233  Sum_probs=117.1

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      .++.++++++.+. .+++ ...  +..++.+.+..+.+..++. +..+..++... ..    .          +...++.
T Consensus       156 ~L~~L~l~~~~~~-~~~~-~~~--l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~-l~----~----------n~l~~~~  215 (347)
T 4fmz_A          156 GLNYLTVTESKVK-DVTP-IAN--LTDLYSLSLNYNQIEDISP-LASLTSLHYFT-AY----V----------NQITDIT  215 (347)
T ss_dssp             TCCEEECCSSCCC-CCGG-GGG--CTTCSEEECTTSCCCCCGG-GGGCTTCCEEE-CC----S----------SCCCCCG
T ss_pred             CCcEEEecCCCcC-Cchh-hcc--CCCCCEEEccCCccccccc-ccCCCccceee-cc----c----------CCCCCCc
Confidence            4556666666654 2222 333  5667777777777666654 22222221110 00    0          0111111


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .    ...++.|+.|++++|.+++..+  +..+++|+.|++++|.+++ + +.+.. ++|+.|++++|++++ +| .+..
T Consensus       216 ~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~  285 (347)
T 4fmz_A          216 P----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNN  285 (347)
T ss_dssp             G----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             h----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcC
Confidence            1    1233468999999999996544  8999999999999999984 4 45667 999999999999995 44 5889


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|+.|++++|++++..|..+..+.. |+.|++++|++.
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~  324 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHIT  324 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSSCC
T ss_pred             CCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCccc
Confidence            999999999999999888888888876 999999999873

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.07  E-value=5.4e-10  Score=101.91  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=84.7

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      .+.++++++++. .+|..+  .++|+.|++++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            456899999998 456544  479999999999999655555677 9999999999999966666789999999999999


Q ss_pred             ccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          505 NLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++++..+..+..+.. |+.|++++|++.
T Consensus        86 N~l~~~~~~~~~~l~~-L~~L~l~~N~l~  113 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQ-LKELALDTNQLK  113 (177)
T ss_dssp             SCCCCCCTTTTTTCTT-CCEEECCSSCCS
T ss_pred             CCccccCHHHhhCCcc-cCEEECcCCcce
Confidence            9999444444566665 999999999873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.06  E-value=7.5e-11  Score=127.52  Aligned_cols=92  Identities=26%  Similarity=0.358  Sum_probs=79.1

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+|++|.+++ +|.   .+++|+.|+|++|++++ +|.   . ++|+.|+|++|++++ +|. +.  ++|+.|+|+
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            37889999999997 666   68999999999999995 776   5 899999999999996 888 66  899999999


Q ss_pred             cccCcccCchhHHhcccCC-------cEEEccCCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHG-------GAFEYVKTPNC  533 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L-------~~L~ls~N~l~  533 (533)
                      +|+++ .+|. +..   +|       +.|+|++|+|.
T Consensus       189 ~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             SSCCS-SCCC-CC-----------CCEEEECCSSCCC
T ss_pred             CCCCC-chhh-HHH---hhhcccccceEEecCCCcce
Confidence            99999 8888 543   37       99999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=1.6e-10  Score=114.55  Aligned_cols=101  Identities=21%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.|+|++|.+++ + +.+..+++|+.|++++|++++ + +.+.. ++|+.|+|++|++++.  ..+..+++|+.|+|
T Consensus        90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  163 (291)
T ss_dssp             TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence            458899999999986 3 349999999999999999985 4 45667 9999999999999954  57899999999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++|++++ ++. +..+.. |+.|++++|++.
T Consensus       164 ~~N~l~~-~~~-l~~l~~-L~~L~L~~N~i~  191 (291)
T 1h6t_A          164 EDNQISD-IVP-LAGLTK-LQNLYLSKNHIS  191 (291)
T ss_dssp             CSSCCCC-CGG-GTTCTT-CCEEECCSSCCC
T ss_pred             cCCcccc-chh-hcCCCc-cCEEECCCCcCC
Confidence            9999994 554 777766 999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.04  E-value=1.5e-10  Score=126.24  Aligned_cols=102  Identities=23%  Similarity=0.280  Sum_probs=87.3

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++ + +.+.. ++|+.|+|++|++++.  ..+..|++|+.|+
T Consensus        86 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             CTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             CCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence            4458899999999986 3 379999999999999999984 4 45677 9999999999999964  5789999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++|++++..|  +..+.. |+.|+|++|+|+
T Consensus       160 Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~i~  188 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTK-LQNLYLSKNHIS  188 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTT-CCEEECCSSCCC
T ss_pred             CcCCcCCCchh--hccCCC-CCEEECcCCCCC
Confidence            99999996545  777766 999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.03  E-value=2e-10  Score=121.26  Aligned_cols=161  Identities=15%  Similarity=0.094  Sum_probs=116.8

Q ss_pred             eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      ..++.+++++|++++ ++  .+.  +..++.+++..+.+..++  +..+.+|+... ..    .          +...++
T Consensus        64 ~~L~~L~Ls~n~l~~-~~--~~~--l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~-L~----~----------N~l~~l  121 (457)
T 3bz5_A           64 TGLTKLICTSNNITT-LD--LSQ--NTNLTYLACDSNKLTNLD--VTPLTKLTYLN-CD----T----------NKLTKL  121 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTT--CTTCSEEECCSSCCSCCC--CTTCTTCCEEE-CC----S----------SCCSCC
T ss_pred             CCCCEEEccCCcCCe-Ec--ccc--CCCCCEEECcCCCCceee--cCCCCcCCEEE-CC----C----------CcCCee
Confidence            467788888888874 32  444  677888888888877664  33333332211 11    1          122222


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      .     ...+..|+.|++++|++++.   .++.+++|+.|++++|+..+.+  .+.. ++|+.|++++|++++ +|  ++
T Consensus       122 ~-----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~  188 (457)
T 3bz5_A          122 D-----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VS  188 (457)
T ss_dssp             C-----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CT
T ss_pred             c-----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cc
Confidence            1     23345688999999999974   3888999999999999777677  3666 999999999999996 66  88


Q ss_pred             CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .+++|+.|++++|++++ ++  +..+.. |+.|++++|++.
T Consensus       189 ~l~~L~~L~l~~N~l~~-~~--l~~l~~-L~~L~Ls~N~l~  225 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITK-LD--LNQNIQ-LTFLDCSSNKLT  225 (457)
T ss_dssp             TCTTCCEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCCS
T ss_pred             cCCCCCEEECcCCcCCe-ec--cccCCC-CCEEECcCCccc
Confidence            99999999999999995 43  667665 999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.03  E-value=1e-10  Score=123.72  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|+|++|.+.+..+  +..+++|+.|++++|++++..|  +.. ++|+.|++++|++++.  ..+..+++|+.|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence            3457888888888886544  7888888888888888886655  556 8888888888888854  4678888899999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +++|++++..|  +..+.. |+.|++++|++
T Consensus       360 l~~n~l~~~~~--~~~l~~-L~~L~l~~n~~  387 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTR-ITQLGLNDQAW  387 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTT-CCEEECCCEEE
T ss_pred             CCCCccCccch--hhcCCC-CCEEeccCCcc
Confidence            99998886665  667665 88888888864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.02  E-value=1.9e-10  Score=121.51  Aligned_cols=96  Identities=22%  Similarity=0.223  Sum_probs=69.8

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..|+.|++++|++++ +|  +..+++|+.|++++|++++.   .+.. ++|+.|++++|++++ +|  ++.+++|+.|+
T Consensus       169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            4457888888888886 44  77888888888888888854   3666 888888888888886 66  78888888888


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +++|++++. |  +..+.. |+.|++++|+
T Consensus       240 l~~N~l~~~-~--~~~l~~-L~~L~l~~n~  265 (457)
T 3bz5_A          240 CSVNPLTEL-D--VSTLSK-LTTLHCIQTD  265 (457)
T ss_dssp             CCSSCCSCC-C--CTTCTT-CCEEECTTCC
T ss_pred             eeCCcCCCc-C--HHHCCC-CCEEeccCCC
Confidence            888888854 4  223332 4444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.00  E-value=1.1e-10  Score=123.24  Aligned_cols=97  Identities=20%  Similarity=0.242  Sum_probs=76.0

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      ..|+.|++++|.+++ +| +++.+++|++|++++|++++ +|..+  .+|+.|++++|++++ +| .++++++|+.|+++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            357888888888886 66 58888888888888888884 66433  588888888888885 67 58888899999999


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+++ .+|...    .+|+.|++++|++
T Consensus       204 ~N~l~-~l~~~~----~~L~~L~l~~n~l  227 (454)
T 1jl5_A          204 NNSLK-KLPDLP----LSLESIVAGNNIL  227 (454)
T ss_dssp             SSCCS-SCCCCC----TTCCEEECCSSCC
T ss_pred             CCcCC-cCCCCc----CcccEEECcCCcC
Confidence            99888 466532    2488899998876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.99  E-value=2.2e-10  Score=121.17  Aligned_cols=166  Identities=18%  Similarity=0.283  Sum_probs=112.1

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      .++.+++++|++.. +++ .+.  +..++.+.+..+.+..++. +..+.+|+... ...              +...++.
T Consensus       200 ~L~~L~l~~n~l~~-~~~-~~~--l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~-l~~--------------n~l~~~~  259 (466)
T 1o6v_A          200 NLESLIATNNQISD-ITP-LGI--LTNLDELSLNGNQLKDIGT-LASLTNLTDLD-LAN--------------NQISNLA  259 (466)
T ss_dssp             TCSEEECCSSCCCC-CGG-GGG--CTTCCEEECCSSCCCCCGG-GGGCTTCSEEE-CCS--------------SCCCCCG
T ss_pred             CCCEEEecCCcccc-ccc-ccc--cCCCCEEECCCCCcccchh-hhcCCCCCEEE-CCC--------------Cccccch
Confidence            46667777776653 222 222  5667777777776665532 22222222111 100              1111111


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .    ...++.|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +.. ++|+.|+|++|++++..|  +..
T Consensus       260 ~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~  329 (466)
T 1o6v_A          260 P----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS  329 (466)
T ss_dssp             G----GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             h----hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence            1    1223458889999999986544  8899999999999999985443  666 999999999999997665  788


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|+.|++++|++++ + ..+..+.. |+.|++++|++.
T Consensus       330 l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~L~l~~n~l~  366 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSD-V-SSLANLTN-INWLSAGHNQIS  366 (466)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGTTCTT-CCEEECCSSCCC
T ss_pred             CccCCEeECCCCccCC-c-hhhccCCC-CCEEeCCCCccC
Confidence            9999999999999995 4 45777766 999999999873

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.98  E-value=2.7e-10  Score=113.81  Aligned_cols=110  Identities=18%  Similarity=0.076  Sum_probs=89.6

Q ss_pred             ceeEEEEEEeCCCCCccccc----hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccC--C--CccCC
Q 009515          422 TAVVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--I--PDSLT  492 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~--i--P~~~~  492 (533)
                      .+..|+.|+|++|.+.+..+    ..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++.+.  +  +..++
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            34678999999999998655    45567999999999999999777788888 9999999999998763  3  23347


Q ss_pred             CCcCCCEEEeecccCcccCchh---H-HhcccCCcEEEccCCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEE---L-YSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~---l-~~l~~~L~~L~ls~N~l~  533 (533)
                      .+++|++|+|++|+++ .+|..   + ..+.. |+.|+|++|++.
T Consensus       195 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~-L~~L~Ls~N~l~  237 (310)
T 4glp_A          195 KFPAIQNLALRNTGME-TPTGVCAALAAAGVQ-PHSLDLSHNSLR  237 (310)
T ss_dssp             SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC-CSSEECTTSCCC
T ss_pred             cCCCCCEEECCCCCCC-chHHHHHHHHhcCCC-CCEEECCCCCCC
Confidence            8999999999999998 55543   3 45455 999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.97  E-value=7.4e-12  Score=129.10  Aligned_cols=108  Identities=18%  Similarity=0.237  Sum_probs=90.8

Q ss_pred             EEEEEEeCCCCCc--c---ccchhhhccCCCCEEEccCCCCC----CCCCCccCC-CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGSQGLK--G---YISDKISLLSNLVNLNLSTNSLG----GTLPSGLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .|+.|+|++|++.  |   .++..+..+++|+.|+|++|.++    +.+|..+.. ++|+.|+|++|++++.    +|..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            5889999999998  3   34448889999999999999996    678888888 9999999999999876    5666


Q ss_pred             C--CCCcCCCEEEeecccCcc----cCchhHHh-cccCCcEEEccCCCCC
Q 009515          491 L--TSSSKLQLVLLNNNLLEG----RVPEELYS-IGVHGGAFEYVKTPNC  533 (533)
Q Consensus       491 ~--~~l~~L~~L~L~~N~l~g----~lP~~l~~-l~~~L~~L~ls~N~l~  533 (533)
                      +  +.+++|+.|+|++|++++    .+|..+.. +.. |+.|++++|++.
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~-L~~L~l~~N~l~  316 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGNRFS  316 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTSBSC
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC-ceEEEccCCcCC
Confidence            6  448999999999999996    48988844 555 999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.93  E-value=5e-10  Score=118.13  Aligned_cols=81  Identities=26%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             EEEEEeCCCCCccccchhhhcc-CCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          426 ISQIDLGSQGLKGYISDKISLL-SNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L-~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      |+.|++++|.+++ ++    .+ ++|+.|++++|++++ +|..+  ++|+.|++++|+++ .+|.   .+++|+.|++++
T Consensus       299 L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~  366 (454)
T 1jl5_A          299 LYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALP--PRLERLIASFNHLA-EVPE---LPQNLKQLHVEY  366 (454)
T ss_dssp             CCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccC--CcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence            4455555555543 11    12 355566666666553 44322  45556666666655 4554   345566666666


Q ss_pred             ccCcc--cCchhHHhc
Q 009515          505 NLLEG--RVPEELYSI  518 (533)
Q Consensus       505 N~l~g--~lP~~l~~l  518 (533)
                      |++++  .+|..+..+
T Consensus       367 N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          367 NPLREFPDIPESVEDL  382 (454)
T ss_dssp             SCCSSCCCCCTTCCEE
T ss_pred             CCCCcCCCChHHHHhh
Confidence            66655  455555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.92  E-value=3.4e-11  Score=112.16  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=88.8

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..|+.|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+.. ++|+.|+|++|++++ +| .++.+++|+.|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            3468899999999996 66 8999999999999999998 78887777 899999999999995 66 688899999999


Q ss_pred             eecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .+|.  .+..+.. |+.|++++|++
T Consensus       122 l~~N~i~-~~~~~~~l~~l~~-L~~L~l~~N~l  152 (198)
T 1ds9_A          122 MSNNKIT-NWGEIDKLAALDK-LEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTT-CSEEEECSCHH
T ss_pred             CCCCcCC-chhHHHHHhcCCC-CCEEEecCCcc
Confidence            9999998 5554  6777666 99999999975

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=2.4e-09  Score=104.36  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      .+..|+.|+|++|.+++..+  +..+++|+.|++++|+++ .+|.... ++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus        61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            34568999999999996544  999999999999999998 4665433 899999999999995 54 589999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      |++|+++ .+| .+..+.. |+.|++++|++.
T Consensus       135 Ls~N~i~-~~~-~l~~l~~-L~~L~L~~N~i~  163 (263)
T 1xeu_A          135 IRNNKLK-SIV-MLGFLSK-LEVLDLHGNEIT  163 (263)
T ss_dssp             CTTSCCC-BCG-GGGGCTT-CCEEECTTSCCC
T ss_pred             CCCCcCC-CCh-HHccCCC-CCEEECCCCcCc
Confidence            9999999 566 5777766 999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.91  E-value=1.4e-09  Score=110.49  Aligned_cols=108  Identities=14%  Similarity=0.145  Sum_probs=86.2

Q ss_pred             CCCC-CCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCc
Q 009515          402 CAPT-NWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSL  473 (533)
Q Consensus       402 c~~~-~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L  473 (533)
                      |.+. +.|.+..|.|...+...     +..++.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|... .. ++|
T Consensus         2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X            2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            5433 44888999998654322     2458999999999996556679999999999999999987888654 45 665


Q ss_pred             c-EEEccCCccccCCCccCCCCcCCCEEEeecccCcc
Q 009515          474 V-RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG  509 (533)
Q Consensus       474 ~-~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g  509 (533)
                      . .+.++.|++++..|..+..+++|+.|++++|++++
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             hhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            5 56778899997778889999999999999999883

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.89  E-value=2.7e-11  Score=112.89  Aligned_cols=103  Identities=24%  Similarity=0.283  Sum_probs=82.0

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCCC
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKLQ  498 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~  498 (533)
                      .+..|+.|+|++|.++ .+|..+..+++|+.|++++|++++ +| .+.. ++|+.|+|++|++++ +|  ..+..+++|+
T Consensus        68 ~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE  143 (198)
T ss_dssp             HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred             cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence            3456888999999988 678888888999999999999985 55 5666 899999999999984 34  3688899999


Q ss_pred             EEEeecccCcccCchh----------HHhcccCCcEEEccCCC
Q 009515          499 LVLLNNNLLEGRVPEE----------LYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       499 ~L~L~~N~l~g~lP~~----------l~~l~~~L~~L~ls~N~  531 (533)
                      .|++++|++++.+|..          +..+.. |+.||  +|+
T Consensus       144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~-L~~Ld--~~~  183 (198)
T 1ds9_A          144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPN-LKKLD--GMP  183 (198)
T ss_dssp             EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS-CSEEC--CGG
T ss_pred             EEEecCCccccccccccchHHHHHHHHHhCCC-cEEEC--Ccc
Confidence            9999999998766642          666665 88887  444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.88  E-value=5.8e-10  Score=114.82  Aligned_cols=109  Identities=26%  Similarity=0.260  Sum_probs=83.9

Q ss_pred             eEEEEEEeCCCCCc-cccc---hhhhccCCCCEEEccCCCCC--C---CCCCccCC-CCccEEEccCCccc----cCCCc
Q 009515          424 VVISQIDLGSQGLK-GYIS---DKISLLSNLVNLNLSTNSLG--G---TLPSGLGQ-QSLVRLDLSDNQFT----GSIPD  489 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~-g~~p---~~l~~L~~L~~L~Ls~N~l~--g---~iP~~l~~-~~L~~L~Ls~N~l~----g~iP~  489 (533)
                      +.|+.|+|++|++. +.++   ..+..+++|+.|++++|.++  |   .+|..+.. ++|+.|+|++|+++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            46888888888887 4445   46778888899999988887  3   34446666 88999999999886    67888


Q ss_pred             cCCCCcCCCEEEeecccCccc----CchhHHh--cccCCcEEEccCCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGR----VPEELYS--IGVHGGAFEYVKTPNC  533 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~----lP~~l~~--l~~~L~~L~ls~N~l~  533 (533)
                      .+..+++|+.|+|++|++++.    +|..+..  +.. |+.|+|++|++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~-L~~L~L~~n~i~  287 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIE  287 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC-CCEEECCSSCCB
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC-eEEEECcCCcCC
Confidence            888888999999999988865    4565533  554 889999998863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=3.2e-09  Score=107.54  Aligned_cols=101  Identities=23%  Similarity=0.239  Sum_probs=85.7

Q ss_pred             CCCCcceeecCC-CC------CceeEEEEEEeCC-CCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEE
Q 009515          407 WDAWEGITCHPN-KD------ETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD  477 (533)
Q Consensus       407 ~~~w~gv~c~~~-~~------~~~~~L~~L~Ls~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~  477 (533)
                      .|.|..+.|... ..      ..+..|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..+.. ++|+.|+
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            478889999765 32      3345689999996 9999888899999999999999999999888888888 9999999


Q ss_pred             ccCCccccCCCccCCCCcCCCEEEeecccCc
Q 009515          478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (533)
Q Consensus       478 Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~  508 (533)
                      |++|+|++..|..+..++ |+.|+|.+|.+.
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            999999955444555555 999999999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.82  E-value=4.8e-09  Score=114.65  Aligned_cols=94  Identities=20%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      ..|+.|+|++|.+++ +|..   +++|+.|++++|.++ .+|..+  ++|+.|+|++|++++ +|   ..+++|+.|+|+
T Consensus       181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~--~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls  249 (622)
T 3g06_A          181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTS-LP---VLPSELKELMVS  249 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC--TTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred             CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC--CCCCEEEccCCccCc-CC---CCCCcCcEEECC
Confidence            346677777777764 3332   466777777777776 555322  778999999999984 77   456789999999


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +|+++ .+|.   .+. +|+.|+|++|+|.
T Consensus       250 ~N~L~-~lp~---~~~-~L~~L~Ls~N~L~  274 (622)
T 3g06_A          250 GNRLT-SLPM---LPS-GLLSLSVYRNQLT  274 (622)
T ss_dssp             SSCCS-CCCC---CCT-TCCEEECCSSCCC
T ss_pred             CCCCC-cCCc---ccc-cCcEEeCCCCCCC
Confidence            99998 7887   333 4899999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.70  E-value=1.6e-09  Score=109.04  Aligned_cols=108  Identities=20%  Similarity=0.183  Sum_probs=77.7

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCC-CCCCC-CCCccCC-CCccEEEccCC-ccccC-CCccCCCCc-C
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGT-LPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSS-K  496 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~-iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~-~  496 (533)
                      ++.|+.|+|++|.+++..+..+..+++|+.|++++| .+++. ++..+.. ++|+.|+|++| ++++. +|..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            446777888888777777777777888888888887 56642 5555555 77888888888 77754 566677777 8


Q ss_pred             CCEEEeecc--cCc-ccCchhHHhcccCCcEEEccCCC
Q 009515          497 LQLVLLNNN--LLE-GRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       497 L~~L~L~~N--~l~-g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      |+.|+|++|  .++ +.+|..+..+.. |+.|++++|.
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~  233 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSV  233 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCT
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCC-CCEEeCCCCC
Confidence            888888887  454 466776666665 8888888876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.68  E-value=1.9e-09  Score=109.53  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             EEEEEeCC-CCCccccchhhhccC-CCCEEEccCCCCCCCCCCccCC-CCccEEEccC-CccccCCCc-cCCCCcCCCEE
Q 009515          426 ISQIDLGS-QGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPD-SLTSSSKLQLV  500 (533)
Q Consensus       426 L~~L~Ls~-n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~-N~l~g~iP~-~~~~l~~L~~L  500 (533)
                      +..|++.+ +.+....+..+..+. .|+.|++++|+++ .+|..... .+|+.|++++ |+++ .+|. .|.++++|+.|
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL  207 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchh
Confidence            45566644 455544444555553 5777788888877 66666656 7777777765 4444 6664 46777788888


Q ss_pred             EeecccCcccCchhHHhcccCCcEEEccCC
Q 009515          501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKT  530 (533)
Q Consensus       501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N  530 (533)
                      +|++|+++ .+|.....   +|+.|.+.++
T Consensus       208 dLs~N~l~-~lp~~~~~---~L~~L~~l~~  233 (350)
T 4ay9_X          208 DISRTRIH-SLPSYGLE---NLKKLRARST  233 (350)
T ss_dssp             ECTTSCCC-CCCSSSCT---TCCEEECTTC
T ss_pred             hcCCCCcC-ccChhhhc---cchHhhhccC
Confidence            88888877 67764322   2555554433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.67  E-value=3.4e-09  Score=106.52  Aligned_cols=109  Identities=21%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             eeEEEEEEeCCCCCccc-cchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC-ccccC-CCccCCCCcCCC
Q 009515          423 AVVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSSKLQ  498 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~  498 (533)
                      +..|+.|+|++|.+.+. ++..+..+++|+.|++++|.+++..|..+.. ++|+.|+|++| .+++. +|..+.++++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            45688999999998866 8888889999999999999998888888888 99999999999 67763 677788889999


Q ss_pred             EEEeecc-cCccc-CchhHHhcccCCcEEEccCCC
Q 009515          499 LVLLNNN-LLEGR-VPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       499 ~L~L~~N-~l~g~-lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +|++++| .+++. +|..+..+..+|+.|++++|.
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            9999999 88854 677777777239999999983

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.67  E-value=6.1e-09  Score=106.29  Aligned_cols=108  Identities=20%  Similarity=0.212  Sum_probs=83.7

Q ss_pred             EEEEEEeCCCCCccccchhhhcc-----CCCCEEEccCCCCCCCCCCccCC------CCccEEEccCCccccCCCccCC-
Q 009515          425 VISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLT-  492 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~iP~~l~~------~~L~~L~Ls~N~l~g~iP~~~~-  492 (533)
                      .|+.|+|++|.+.+..+..+..+     ++|+.|+|++|.+++..+..+..      ++|+.|+|++|++++..+..+. 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            58899999999998878777776     89999999999998666654332      5899999999999876665443 


Q ss_pred             ---C-CcCCCEEEeecccCcccC----chhHHhcccCCcEEEccCCCC
Q 009515          493 ---S-SSKLQLVLLNNNLLEGRV----PEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       493 ---~-l~~L~~L~L~~N~l~g~l----P~~l~~l~~~L~~L~ls~N~l  532 (533)
                         . .++|++|+|++|+++..-    +..+.....+|+.|+|++|++
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence               3 368999999999998533    444455543599999999986

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.62  E-value=1.2e-08  Score=104.07  Aligned_cols=108  Identities=20%  Similarity=0.190  Sum_probs=88.7

Q ss_pred             EEEEEEeCCCCCccccc----hhhhccC-CCCEEEccCCCCCCCCCCccCC------CCccEEEccCCccccCCCccCCC
Q 009515          425 VISQIDLGSQGLKGYIS----DKISLLS-NLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~------~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .|+.|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..      ++|+.|+|++|++++..+..+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            48899999999997776    7788888 8999999999999776665554      68999999999999877765444


Q ss_pred             ----C-cCCCEEEeecccCcccCchhHHhc----ccCCcEEEccCCCC
Q 009515          494 ----S-SKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFEYVKTPN  532 (533)
Q Consensus       494 ----l-~~L~~L~L~~N~l~g~lP~~l~~l----~~~L~~L~ls~N~l  532 (533)
                          + ++|+.|+|++|++++..+..+...    ..+|+.|+|++|++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence                4 899999999999996666565543    33599999999986

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.46  E-value=1.4e-08  Score=106.72  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCCccccchhhhcc-----CCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccCCCccCCC-
Q 009515          425 VISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS-  493 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~-  493 (533)
                      .|+.|+|++|.+....+..+...     ++|+.|++++|.+++.    ++..+.. ++|+.|+|++|++++..+..+.. 
T Consensus       285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  364 (461)
T 1z7x_W          285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG  364 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence            35566666666654433333322     4666666666666543    3444444 66777777777666543333322 


Q ss_pred             ----CcCCCEEEeecccCcc----cCchhHHhcccCCcEEEccCCCC
Q 009515          494 ----SSKLQLVLLNNNLLEG----RVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       494 ----l~~L~~L~L~~N~l~g----~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                          +++|+.|+|++|++++    .+|..+..+.. |+.|++++|++
T Consensus       365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~l~~N~i  410 (461)
T 1z7x_W          365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLSNNCL  410 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC-CCEEECCSSSC
T ss_pred             HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC-ccEEECCCCCC
Confidence                4567777777777664    56666666554 77777777765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.37  E-value=4e-08  Score=103.10  Aligned_cols=110  Identities=19%  Similarity=0.133  Sum_probs=88.0

Q ss_pred             eEEEEEEeCCCCCccc----cchhhhccCCCCEEEccCCCCCCCCCCcc----CC--CCccEEEccCCccccC----CCc
Q 009515          424 VVISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGTLPSGL----GQ--QSLVRLDLSDNQFTGS----IPD  489 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l----~~--~~L~~L~Ls~N~l~g~----iP~  489 (533)
                      ..|+.|+|++|.++..    ++..+..+++|+.|++++|.+++..+..+    ..  ++|+.|+|++|++++.    +|.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            4588999999999864    67888889999999999999875433333    22  5899999999999875    566


Q ss_pred             cCCCCcCCCEEEeecccCcccCchhHHhc----ccCCcEEEccCCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFEYVKTPNC  533 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l----~~~L~~L~ls~N~l~  533 (533)
                      .+..+++|+.|+|++|++++..+..+...    ...|+.|++++|++.
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            77788999999999999986666666542    224999999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.8e-07  Score=89.54  Aligned_cols=81  Identities=23%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             hhccCCCCEEEccCCCCCC--CCCCccCC-CCccEEEccCCccccCCCccCCCCc--CCCEEEeecccCcccCch-----
Q 009515          444 ISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--KLQLVLLNNNLLEGRVPE-----  513 (533)
Q Consensus       444 l~~L~~L~~L~Ls~N~l~g--~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~--~L~~L~L~~N~l~g~lP~-----  513 (533)
                      ..++++|+.|+|++|++++  .+|..+.. ++|+.|+|++|++++.  +.+..+.  +|+.|+|++|.+++.+|.     
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            3578899999999999997  55666666 9999999999999964  3344444  899999999999987773     


Q ss_pred             --hHHhcccCCcEEEc
Q 009515          514 --ELYSIGVHGGAFEY  527 (533)
Q Consensus       514 --~l~~l~~~L~~L~l  527 (533)
                        .+..+++ |+.||-
T Consensus       244 ~~il~~~P~-L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPK-LLRLDG  258 (267)
T ss_dssp             HHHHHHCTT-CCEESS
T ss_pred             HHHHHHCcc-cCeECC
Confidence              2455555 888863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.26  E-value=2.1e-07  Score=95.38  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             EEEEEEeCCCCCccccchhhh-----ccCCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGSQGLKGYISDKIS-----LLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~-----~L~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .|+.|+|++|.++......+.     ..++|+.|+|++|.++..    ++..+.. ++|+.|+|++|++...    ++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            367777777777644333332     346677778877777531    3333344 6777788877777642    2445


Q ss_pred             CCCCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +..+++|+.|+|++|.++..    ++..+..... |+.|+|++|+|
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~-L~~L~Ls~N~i  251 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPS-LELLHLYFNEL  251 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS-CCEEECTTSSC
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC-CCEEeccCCCC
Confidence            55666777788887777632    3333444444 77788877775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.02  E-value=8.5e-07  Score=96.06  Aligned_cols=109  Identities=9%  Similarity=-0.000  Sum_probs=78.5

Q ss_pred             eEEEEEEeC----CCCCccc-----cchhhhccCCCCEEEccCC--CCCCCCCCccCC--CCccEEEccCCcccc-CCCc
Q 009515          424 VVISQIDLG----SQGLKGY-----ISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ--QSLVRLDLSDNQFTG-SIPD  489 (533)
Q Consensus       424 ~~L~~L~Ls----~n~l~g~-----~p~~l~~L~~L~~L~Ls~N--~l~g~iP~~l~~--~~L~~L~Ls~N~l~g-~iP~  489 (533)
                      +.|+.|+++    .|.+++.     ++..+..+++|+.|+++.+  .+++..+..+..  ++|+.|+|++|++++ .++.
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  482 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME  482 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence            347777774    6677653     4445677888888888743  366555555544  789999999999886 3555


Q ss_pred             cCCCCcCCCEEEeecccCcccC-chhHHhcccCCcEEEccCCCCC
Q 009515          490 SLTSSSKLQLVLLNNNLLEGRV-PEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       490 ~~~~l~~L~~L~L~~N~l~g~l-P~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .+..+++|+.|+|++|.+++.. +..+..+.. |+.|++++|++.
T Consensus       483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~ls~n~it  526 (592)
T 3ogk_B          483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS-LRYLWVQGYRAS  526 (592)
T ss_dssp             HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS-CCEEEEESCBCC
T ss_pred             HHhcCcccCeeeccCCCCcHHHHHHHHHhcCc-cCeeECcCCcCC
Confidence            6678899999999999987553 444455554 999999999863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.02  E-value=5.2e-07  Score=92.39  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             eEEEEEEeCCCCCccccchhh-hccCCCCEEEccCCCCCCCCCCcc-----CC-CCccEEEccCCcccc----CCCccCC
Q 009515          424 VVISQIDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL-----GQ-QSLVRLDLSDNQFTG----SIPDSLT  492 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~iP~~l-----~~-~~L~~L~Ls~N~l~g----~iP~~~~  492 (533)
                      ..|+.|+|++|.+...-...+ ..+.+|+.|+|++|.++..-...+     .. .+|+.|+|++|+++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            359999999999975433333 356789999999999974433333     23 789999999999974    2445557


Q ss_pred             CCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCCC
Q 009515          493 SSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      .+++|++|+|++|.+...    ++..+..... |+.|+|++|.|.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~  224 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAG  224 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCC
Confidence            789999999999999742    3455556554 999999999873

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=9.2e-07  Score=81.17  Aligned_cols=107  Identities=15%  Similarity=0.193  Sum_probs=80.4

Q ss_pred             EEEEEEeCCC-CCcc----ccchhhhccCCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .|+.|+|++| .+..    .+...+...++|++|+|++|.+...    +...+.. ++|+.|+|++|++...    +.+.
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            3788999999 8864    2455667778999999999998732    2333444 7899999999998853    4556


Q ss_pred             CCCCcCCCEEEe--ecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515          491 LTSSSKLQLVLL--NNNLLEGR----VPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       491 ~~~l~~L~~L~L--~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +...+.|++|+|  ++|.+...    +...+..... |+.|+|++|.+
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~-L~~L~L~~n~i  163 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT-LLKFGYHFTQQ  163 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS-CCEEECCCSSH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC-cCEEeccCCCC
Confidence            777789999999  88999743    3344444454 99999999975

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.93  E-value=4.1e-06  Score=81.32  Aligned_cols=76  Identities=25%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             eEEEEEEeCCCCCcc--ccchhhhccCCCCEEEccCCCCCCCCCCccCC-C--CccEEEccCCccccCCCc-------cC
Q 009515          424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q--SLVRLDLSDNQFTGSIPD-------SL  491 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~--~L~~L~Ls~N~l~g~iP~-------~~  491 (533)
                      +.|+.|+|++|.|++  .+|..+..+++|+.|+|++|++++.  ..+.. .  +|+.|+|++|.+.+.+|.       .+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            458999999999998  5678888999999999999999954  44555 4  899999999999988873       25


Q ss_pred             CCCcCCCEEE
Q 009515          492 TSSSKLQLVL  501 (533)
Q Consensus       492 ~~l~~L~~L~  501 (533)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            6788888875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=3.2e-05  Score=77.40  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=79.2

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCcc-EEEccCCccccCCCccCCCCcCCCEEE
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLV-RLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~-~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      .|+.|+|++|+++......|.++++|+.|+|++| ++ .|++.. .. .+|+ .+++++ +++..-+..|.+|++|+.|+
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            4889999999999766778999999999999998 76 666654 44 8899 999998 77745567899999999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEc
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEY  527 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~l  527 (533)
                      +.+|+++ .|+...+....+|+.|..
T Consensus       304 l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             eCCCccC-ccchhhhcCCcchhhhcc
Confidence            9999999 777654443334888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.66  E-value=3.4e-05  Score=83.33  Aligned_cols=100  Identities=15%  Similarity=0.049  Sum_probs=51.8

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCC---CCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG---GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~---g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      |+.|+|++|.+.+ ++..+..+++|+.|+++.....   +..+..+.. ++|+.|+++++.. +.+|..+..+++|+.|+
T Consensus       222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred             CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence            4445555544443 3444445555555555432221   122233344 5566666655432 35666666677777777


Q ss_pred             eecccCcccCchh-HHhcccCCcEEEcc
Q 009515          502 LNNNLLEGRVPEE-LYSIGVHGGAFEYV  528 (533)
Q Consensus       502 L~~N~l~g~lP~~-l~~l~~~L~~L~ls  528 (533)
                      |++|.+++..... +..+.+ |+.|+++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~-L~~L~L~  326 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPN-LEVLETR  326 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTT-CCEEEEE
T ss_pred             cCCCcCCHHHHHHHHHhCcC-CCEEecc
Confidence            7777765443323 344443 7777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.63  E-value=5.2e-06  Score=89.79  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=68.8

Q ss_pred             eEEEEEEeC--C----CCCcc-----ccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCcc
Q 009515          424 VVISQIDLG--S----QGLKG-----YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDS  490 (533)
Q Consensus       424 ~~L~~L~Ls--~----n~l~g-----~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~  490 (533)
                      +.|+.|+|+  +    +.++.     .++..+..+++|+.|++++ .+++..+..+..  ++|+.|+|++|++++..+..
T Consensus       397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~  475 (594)
T 2p1m_B          397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH  475 (594)
T ss_dssp             TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred             CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence            346677777  3    44442     2223356677888888866 555444444444  77888888888877654444


Q ss_pred             C-CCCcCCCEEEeecccCcccCchhHHh-cccCCcEEEccCCCC
Q 009515          491 L-TSSSKLQLVLLNNNLLEGRVPEELYS-IGVHGGAFEYVKTPN  532 (533)
Q Consensus       491 ~-~~l~~L~~L~L~~N~l~g~lP~~l~~-l~~~L~~L~ls~N~l  532 (533)
                      + ..+++|+.|+|++|.+++..+..+.. +.. |+.|++++|++
T Consensus       476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~l~~~~~  518 (594)
T 2p1m_B          476 VLSGCDSLRKLEIRDCPFGDKALLANASKLET-MRSLWMSSCSV  518 (594)
T ss_dssp             HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG-SSEEEEESSCC
T ss_pred             HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC-CCEEeeeCCCC
Confidence            4 55788888888888886444443333 444 88888888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.36  E-value=4.2e-05  Score=77.71  Aligned_cols=109  Identities=15%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             eEEEEEEeCCCCCccccchhhh--ccCCCCEEEccC--CCCCCC-----CCCccC--C-CCccEEEccCCccccCCCccC
Q 009515          424 VVISQIDLGSQGLKGYISDKIS--LLSNLVNLNLST--NSLGGT-----LPSGLG--Q-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~--~L~~L~~L~Ls~--N~l~g~-----iP~~l~--~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                      ++|+.|+|..+++.......+.  .+++|+.|+|+.  |...|.     +...+.  . ++|+.|+|.+|++....+..+
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            3478888888887655445555  789999999864  222221     111222  3 899999999998875443333


Q ss_pred             ---CCCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCCC
Q 009515          492 ---TSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       492 ---~~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                         ..+++|++|+|+.|.+.+.    ++..+..+.. |+.|+|++|.+.
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n~i~  320 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYNYLS  320 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT-CSEEECCSBBCC
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc-ceEEECCCCcCC
Confidence               3578999999999998753    3444444554 999999999763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.34  E-value=3.3e-05  Score=83.39  Aligned_cols=105  Identities=17%  Similarity=0.109  Sum_probs=57.6

Q ss_pred             EEEEEEeCCC-CCccc-cchhhhccCCCCEEEccCCCCCCCCCCccC----C-CCccEEEccCCc--ccc-CCCccCCCC
Q 009515          425 VISQIDLGSQ-GLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQ--FTG-SIPDSLTSS  494 (533)
Q Consensus       425 ~L~~L~Ls~n-~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~----~-~~L~~L~Ls~N~--l~g-~iP~~~~~l  494 (533)
                      .|+.|+|++| .++.. ++..+..+++|++|++++|.+++..+..+.    . ++|+.|+|++|.  +.. .++..+..+
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~  210 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC  210 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred             CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence            4666777666 33322 334444667777777777776644333332    2 567777777665  111 011112345


Q ss_pred             cCCCEEEeecccCcccCchhHHhcccCCcEEEccCC
Q 009515          495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKT  530 (533)
Q Consensus       495 ~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N  530 (533)
                      ++|+.|+|++|...+.+|..+..+.. |+.|+++.+
T Consensus       211 ~~L~~L~L~~~~~~~~l~~~~~~~~~-L~~L~l~~~  245 (594)
T 2p1m_B          211 PNLKSLKLNRAVPLEKLATLLQRAPQ-LEELGTGGY  245 (594)
T ss_dssp             TTCCEEECCTTSCHHHHHHHHHHCTT-CSEEECSBC
T ss_pred             CCCcEEecCCCCcHHHHHHHHhcCCc-ceEcccccc
Confidence            67777777766332246666666554 777776544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.28  E-value=5e-05  Score=69.44  Aligned_cols=93  Identities=13%  Similarity=0.148  Sum_probs=70.0

Q ss_pred             ccchhhhccCCCCEEEccCC-CCCCC----CCCccCC-CCccEEEccCCccccC----CCccCCCCcCCCEEEeecccCc
Q 009515          439 YISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLE  508 (533)
Q Consensus       439 ~~p~~l~~L~~L~~L~Ls~N-~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~L~~N~l~  508 (533)
                      .+...+...++|+.|+|++| .+...    +...+.. ++|++|+|++|++...    +.+.+...+.|++|+|++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            45566778899999999999 88632    3344555 8899999999998742    3344556688999999999998


Q ss_pred             cc----CchhHHhcccCCcEEEc--cCCCC
Q 009515          509 GR----VPEELYSIGVHGGAFEY--VKTPN  532 (533)
Q Consensus       509 g~----lP~~l~~l~~~L~~L~l--s~N~l  532 (533)
                      ..    +...+..... |+.|+|  ++|++
T Consensus       107 ~~g~~~l~~~L~~n~~-L~~L~L~~~~N~i  135 (185)
T 1io0_A          107 GSGILALVEALQSNTS-LIELRIDNQSQPL  135 (185)
T ss_dssp             HHHHHHHHHGGGGCSS-CCEEECCCCSSCC
T ss_pred             HHHHHHHHHHHHhCCC-ceEEEecCCCCCC
Confidence            43    3445555554 999999  88986

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.00032  Score=69.94  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             ccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCC-EEEeecccCcccCchh-HHhcccC
Q 009515          446 LLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLNNNLLEGRVPEE-LYSIGVH  521 (533)
Q Consensus       446 ~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-~L~L~~N~l~g~lP~~-l~~l~~~  521 (533)
                      .+++|+.|+|++|+++ .||.... . .+|+.++|++| ++..-+..|.+|.+|+ .+++.+ .++ .|++. +..+.. 
T Consensus       224 ~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~-  298 (329)
T 3sb4_A          224 YMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDN-  298 (329)
T ss_dssp             HCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTT-
T ss_pred             hcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCcc-
Confidence            4889999999999998 7777644 4 89999999998 7744456799999999 999998 777 67655 555555 


Q ss_pred             CcEEEccCCCC
Q 009515          522 GGAFEYVKTPN  532 (533)
Q Consensus       522 L~~L~ls~N~l  532 (533)
                      |+.|++++|++
T Consensus       299 L~~l~l~~n~i  309 (329)
T 3sb4_A          299 LRYVLATGDKI  309 (329)
T ss_dssp             EEEEEECSSCC
T ss_pred             CCEEEeCCCcc
Confidence            99999988875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.64  E-value=0.001  Score=67.39  Aligned_cols=106  Identities=11%  Similarity=0.066  Sum_probs=71.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC--C-CCccEEEccC--CccccC-----CCccC--
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSD--NQFTGS-----IPDSL--  491 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~--~-~~L~~L~Ls~--N~l~g~-----iP~~~--  491 (533)
                      +.|+.|.|+++.-. .++. + .+++|+.|+|..+.++...-..+.  . ++|+.|+|+.  |...|.     +-..+  
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            45888999887311 2333 3 388999999999887643333333  4 8999999863  332222     11122  


Q ss_pred             CCCcCCCEEEeecccCcccCchhHHh--cccCCcEEEccCCCC
Q 009515          492 TSSSKLQLVLLNNNLLEGRVPEELYS--IGVHGGAFEYVKTPN  532 (533)
Q Consensus       492 ~~l~~L~~L~L~~N~l~g~lP~~l~~--l~~~L~~L~ls~N~l  532 (533)
                      ..+++|+.|+|.+|.+....+..+..  ...+|+.|+|+.|.|
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            35789999999999998666666654  223499999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.37  E-value=0.0045  Score=52.83  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             CEEEccCCCCC-CCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecccCc
Q 009515          451 VNLNLSTNSLG-GTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (533)
Q Consensus       451 ~~L~Ls~N~l~-g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~  508 (533)
                      ..++.+++.|+ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999986 46775433 67899999999999443445778899999999999774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.18  E-value=0.0011  Score=59.68  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=60.2

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCC-CCCCCCCccCC-----CCccEEEccCCc-cccCCCccCCCCcCC
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-----QSLVRLDLSDNQ-FTGSIPDSLTSSSKL  497 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~-----~~L~~L~Ls~N~-l~g~iP~~~~~l~~L  497 (533)
                      .|+.|||+++.++..--..+..+++|+.|+|++|. ++..--..+..     ++|+.|+|+++. ++..-=..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            59999999999876555667899999999999985 55221111221     269999999975 653322356788999


Q ss_pred             CEEEeeccc
Q 009515          498 QLVLLNNNL  506 (533)
Q Consensus       498 ~~L~L~~N~  506 (533)
                      +.|+|+++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.18  E-value=0.0078  Score=51.33  Aligned_cols=54  Identities=28%  Similarity=0.458  Sum_probs=41.6

Q ss_pred             EEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccc
Q 009515          428 QIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFT  484 (533)
Q Consensus       428 ~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~  484 (533)
                      .++.++++|+ ..+|..+  -.+|+.|+|++|+|+ .+|... .. ++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            4777888886 3556543  247999999999999 677665 44 89999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.13  E-value=0.0022  Score=58.93  Aligned_cols=105  Identities=10%  Similarity=0.109  Sum_probs=70.0

Q ss_pred             EEEEEeCCC-CCcc----ccchhhhccCCCCEEEccCCCCCCCCCCc----cCC-CCccEEEccCCccccC----CCccC
Q 009515          426 ISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGTLPSG----LGQ-QSLVRLDLSDNQFTGS----IPDSL  491 (533)
Q Consensus       426 L~~L~Ls~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~----l~~-~~L~~L~Ls~N~l~g~----iP~~~  491 (533)
                      |+.|+|++| ++..    .+.+.+..-+.|+.|+|++|.+...--..    +.. +.|+.|+|+.|++...    +-+.+
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL  122 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST  122 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence            777888885 6652    24556666788999999999987332222    333 7899999999998743    22345


Q ss_pred             CCCcCCCEEEeecc---cCcc----cCchhHHhcccCCcEEEccCCC
Q 009515          492 TSSSKLQLVLLNNN---LLEG----RVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       492 ~~l~~L~~L~L~~N---~l~g----~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      ..-+.|+.|+|++|   .+..    .+-..+..... |+.|+++.|.
T Consensus       123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t-L~~L~l~~~~  168 (197)
T 1pgv_A          123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES-LLRVGISFAS  168 (197)
T ss_dssp             TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS-CCEEECCCCC
T ss_pred             hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC-cCeEeccCCC
Confidence            55667999999865   3332    23344544444 8889988774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.97  E-value=0.012  Score=60.33  Aligned_cols=102  Identities=11%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ..|+.++|.+|+++......|. ..+|+.+.|..+ ++ .|+... .. .+|+.++|..| ++..-...|.+ .+|+.+.
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            3466667766666633333333 466777777643 54 444433 33 67777777664 34122234444 5677777


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      | .|.++ .|+...+....+|+.+++.+|.+
T Consensus       255 l-p~~i~-~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          255 L-PNGVT-NIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             E-ETTCC-EECTTTTTTCTTCCEEEEESSCC
T ss_pred             e-CCCcc-EEChhHhhCCCCCCEEEeCCccc
Confidence            7 34455 56554443333488888887754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.96  E-value=0.01  Score=60.85  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=37.1

Q ss_pred             EEEEEEeCCCCCc-----cccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCC
Q 009515          425 VISQIDLGSQGLK-----GYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKL  497 (533)
Q Consensus       425 ~L~~L~Ls~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L  497 (533)
                      .|+.+.+.+|.+.     ..-+..|.++++|+.++|. +.++ .|+.. +.. .+|+.+.|..| ++..-+..|.++ +|
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L  347 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI  347 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred             CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence            3445555544433     2233445555555555555 2344 33333 222 55555555433 332223345555 55


Q ss_pred             CEEEeecccCc
Q 009515          498 QLVLLNNNLLE  508 (533)
Q Consensus       498 ~~L~L~~N~l~  508 (533)
                      +.+++.+|.+.
T Consensus       348 ~~l~l~~n~~~  358 (401)
T 4fdw_A          348 KEVKVEGTTPP  358 (401)
T ss_dssp             CEEEECCSSCC
T ss_pred             CEEEEcCCCCc
Confidence            55555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.79  E-value=0.0034  Score=56.51  Aligned_cols=83  Identities=6%  Similarity=-0.018  Sum_probs=59.3

Q ss_pred             CCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCc-cccCCCccCCCC----cCCCEEEeeccc-CcccCchhHHhccc
Q 009515          448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSS----SKLQLVLLNNNL-LEGRVPEELYSIGV  520 (533)
Q Consensus       448 ~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~-l~g~iP~~~~~l----~~L~~L~L~~N~-l~g~lP~~l~~l~~  520 (533)
                      -.|+.||++++.++..--..+.. ++|+.|+|+++. ++..-=..+..+    ++|++|+|+++. ++-.-=..+.++.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            47999999999987443344556 999999999985 553222234554    479999999975 76322344666655


Q ss_pred             CCcEEEccCCC
Q 009515          521 HGGAFEYVKTP  531 (533)
Q Consensus       521 ~L~~L~ls~N~  531 (533)
                       |+.|++++.+
T Consensus       141 -L~~L~L~~c~  150 (176)
T 3e4g_A          141 -LKYLFLSDLP  150 (176)
T ss_dssp             -CCEEEEESCT
T ss_pred             -CCEEECCCCC
Confidence             9999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.79  E-value=0.027  Score=51.59  Aligned_cols=90  Identities=13%  Similarity=0.187  Sum_probs=61.5

Q ss_pred             cchhhhccCCCCEEEccCC-CCCCC----CCCccCC-CCccEEEccCCccccC----CCccCCCCcCCCEEEeecccCcc
Q 009515          440 ISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEG  509 (533)
Q Consensus       440 ~p~~l~~L~~L~~L~Ls~N-~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~L~~N~l~g  509 (533)
                      +...+.+-+.|+.|+|++| .+...    +-..+.. ..|+.|+|++|++...    +-+.+..-+.|+.|+|+.|.+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3344556678999999986 76521    2334555 8999999999999743    22233355789999999999974


Q ss_pred             cCchhH----HhcccCCcEEEccCC
Q 009515          510 RVPEEL----YSIGVHGGAFEYVKT  530 (533)
Q Consensus       510 ~lP~~l----~~l~~~L~~L~ls~N  530 (533)
                      .--..+    .... .|+.|+|++|
T Consensus       113 ~Ga~ala~aL~~N~-tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQ-SIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTC-CCSEEECCCC
T ss_pred             HHHHHHHHHHhhCC-ceeEEECCCC
Confidence            332333    2333 4999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.40  E-value=0.37  Score=48.78  Aligned_cols=97  Identities=8%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCC-ccCCCCcCCCEEEe
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLL  502 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~L  502 (533)
                      |+.+.+. +.+...-...|.++.+|+.++|..+ ++ .|.+. +.. .+|+.+.|..+ ++ .|. ..|.+|.+|+.+++
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence            5555553 3344333455666777777777654 44 44433 334 67777777544 44 333 45667777777777


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      .+|....   ..+..+.. |+.|.+..|.
T Consensus       365 ~~~~~~~---~~~~~~~~-L~~i~i~~~~  389 (394)
T 4gt6_A          365 SGSRSQW---NAISTDSG-LQNLPVAPGS  389 (394)
T ss_dssp             SSCHHHH---HTCBCCCC-C---------
T ss_pred             CCceeeh---hhhhccCC-CCEEEeCCCC
Confidence            7665431   22333333 6666666554

>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A

Probab=90.48  E-value=6.1  Score=33.59  Aligned_cols=93  Identities=13%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEee
Q 009515           87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS  166 (533)
Q Consensus        87 ~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~  166 (533)
                      |..-.|++.+.+.|.|.|++.+.-+..    ..+.++|++||.........-.+..-........-+....+.=.|.|..
T Consensus        39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~  114 (144)
T 2w47_A           39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA  114 (144)
T ss_dssp             TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred             CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence            445588888878899999998875532    2578999999976422221111111111111222233455555555553


Q ss_pred             c-CCCCceeeeEEEEEcC
Q 009515          167 F-ATDPPVIASLEVQQID  183 (533)
Q Consensus       167 ~-~~~~pfIs~iEl~~l~  183 (533)
                      . +.+.|-|.-|+|.+.+
T Consensus       115 ~~~~g~~niD~i~v~~~~  132 (144)
T 2w47_A          115 IASDGGPNVDYLKVFSAN  132 (144)
T ss_dssp             CSTTCCCEEEEEEEEECT
T ss_pred             eCCCCCEEEeEEEEEeCC
Confidence            2 3456999999998754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.07  E-value=0.4  Score=48.07  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=44.6

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      |+.+.+.. .+...-...|.++++|+.+.+.++.++ .|++. +.. .+|+.+.|..+ ++-.-...|.+|.+|+.+.+.
T Consensus       265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hccccccc-cceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            44555543 243333445667777777777777776 55443 334 77777777654 441223456677777777665


Q ss_pred             cc
Q 009515          504 NN  505 (533)
Q Consensus       504 ~N  505 (533)
                      .+
T Consensus       342 ~~  343 (379)
T 4h09_A          342 KS  343 (379)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.49  E-value=0.33  Score=49.12  Aligned_cols=98  Identities=14%  Similarity=0.307  Sum_probs=65.5

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      |+.+.+..+-.. .-...+.++..|+.+.+. +.++ .|+.... . .+|+.+.|..+ ++-.-...|.+|.+|+.+.|.
T Consensus       267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             ccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            555666544332 334567788889999886 4455 5665544 4 88999998765 442334568888999999986


Q ss_pred             cccCcccCchhHH-hcccCCcEEEccCC
Q 009515          504 NNLLEGRVPEELY-SIGVHGGAFEYVKT  530 (533)
Q Consensus       504 ~N~l~g~lP~~l~-~l~~~L~~L~ls~N  530 (533)
                      .+ ++ .|....+ ++.. |+.+++.+|
T Consensus       343 ~s-v~-~I~~~aF~~C~~-L~~i~~~~~  367 (394)
T 4gt6_A          343 SS-VT-KIPESAFSNCTA-LNNIEYSGS  367 (394)
T ss_dssp             TT-CC-BCCGGGGTTCTT-CCEEEESSC
T ss_pred             cc-cC-EEhHhHhhCCCC-CCEEEECCc
Confidence            54 66 6765544 4444 899988876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=89.20  E-value=0.44  Score=48.17  Aligned_cols=92  Identities=13%  Similarity=0.118  Sum_probs=55.0

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      |+.+.+..+ ++..-...|.++++|+.++|..+ ++ .|... +.. .+|+.+.+..| ++-.-...|.+|.+|+.+++.
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            555666443 44344456777888888888644 55 55443 444 78888888766 552334467788888888886


Q ss_pred             cccCcccCchhHHhcccCCcE
Q 009515          504 NNLLEGRVPEELYSIGVHGGA  524 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~  524 (533)
                      .+ ++ .+...+.++.+ |+.
T Consensus       375 ~~-~~-~~~~~F~~c~~-L~~  392 (394)
T 4fs7_A          375 KR-LE-QYRYDFEDTTK-FKW  392 (394)
T ss_dssp             GG-GG-GGGGGBCTTCE-EEE
T ss_pred             CC-CE-EhhheecCCCC-CcE
Confidence            54 33 33444444443 443

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*

Probab=86.61  E-value=11  Score=31.01  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             CCCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEe
Q 009515           86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY  165 (533)
Q Consensus        86 ~~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~  165 (533)
                      .|..-.|++.+.+.|.|.|++++.-+.  +  ..+.++|++||.........-.+..-....-....+....+.=.|.|.
T Consensus        37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~  112 (127)
T 2vzp_A           37 AGSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAV  112 (127)
T ss_dssp             TTCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEE
Confidence            344568998887889999999987653  1  357899999997643312211111101111112223345555455555


Q ss_pred             ec-CCCCceeeeEEE
Q 009515          166 SF-ATDPPVIASLEV  179 (533)
Q Consensus       166 ~~-~~~~pfIs~iEl  179 (533)
                      .. +.+.|-|.-|+|
T Consensus       113 ~~~~~~~~niD~i~v  127 (127)
T 2vzp_A          113 ATTANGGPNVDKITL  127 (127)
T ss_dssp             ECSTTCCCEEEEEEC
T ss_pred             EeCCCCCeEEEEEEC
Confidence            43 345677777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=84.39  E-value=1  Score=45.44  Aligned_cols=83  Identities=16%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             hhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhH-Hhc
Q 009515          442 DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSI  518 (533)
Q Consensus       442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l-~~l  518 (533)
                      ..+..+.+|+.+.+..+ ++ .|++. +.. .+|+.++|..+ ++-.-...|.+|.+|+.+.+..| ++ .|+... ..+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C  365 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGC  365 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred             ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCC
Confidence            45778889999999765 55 55554 445 89999999755 55233457889999999999877 66 666554 444


Q ss_pred             ccCCcEEEccCC
Q 009515          519 GVHGGAFEYVKT  530 (533)
Q Consensus       519 ~~~L~~L~ls~N  530 (533)
                      .. |+.+++..|
T Consensus       366 ~~-L~~i~lp~~  376 (394)
T 4fs7_A          366 IN-LKKVELPKR  376 (394)
T ss_dssp             TT-CCEEEEEGG
T ss_pred             CC-CCEEEECCC
Confidence            54 999988654

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}

Probab=83.28  E-value=16  Score=30.96  Aligned_cols=92  Identities=11%  Similarity=-0.021  Sum_probs=53.5

Q ss_pred             CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEee
Q 009515           87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS  166 (533)
Q Consensus        87 ~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~  166 (533)
                      |..-.|++.+.+.|.|.|++.+.-+..    ..+.++|++||...-. ...-.+..-....-..+-+....+.=.|.|..
T Consensus        38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~-v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~  112 (145)
T 2w3j_A           38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKT-LDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA  112 (145)
T ss_dssp             TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEE-ECCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred             CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeE-EEecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence            444588888878899999998874432    2578999999976422 11111110011111122333455555555554


Q ss_pred             c-CCCCceeeeEEEEEcC
Q 009515          167 F-ATDPPVIASLEVQQID  183 (533)
Q Consensus       167 ~-~~~~pfIs~iEl~~l~  183 (533)
                      . +.+.|-|.-|+|.+.+
T Consensus       113 ~~~~g~~niD~i~v~~~~  130 (145)
T 2w3j_A          113 ETADGLANIDSIRVTGNG  130 (145)
T ss_dssp             CSTTCCCEEEEEEECSTT
T ss_pred             ecCcCCEEEEEEEEEcCC
Confidence            3 3467999999986544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=82.82  E-value=2.9  Score=41.58  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=70.8

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      .|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++.... . .+|+.+.+.++.++-.-...|.+|.+|+.+.|
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            4666777654 55444566788899999999764 54 5665544 4 89999999998888334457889999999999


Q ss_pred             ecccCcccCchhH-HhcccCCcEEEccCC
Q 009515          503 NNNLLEGRVPEEL-YSIGVHGGAFEYVKT  530 (533)
Q Consensus       503 ~~N~l~g~lP~~l-~~l~~~L~~L~ls~N  530 (533)
                      ..+ ++ .|+... .++.. |+.+.+..+
T Consensus       318 p~~-l~-~I~~~aF~~C~~-L~~i~ip~~  343 (379)
T 4h09_A          318 PTA-LK-TIQVYAFKNCKA-LSTISYPKS  343 (379)
T ss_dssp             CTT-CC-EECTTTTTTCTT-CCCCCCCTT
T ss_pred             Ccc-cc-EEHHHHhhCCCC-CCEEEECCc
Confidence            755 66 666554 44444 888877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	533
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 360 SGLENYALVPNDLSTVP--EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHP 417
           + L +  L  N +S +     +  +  LK        +       A TN +  E      
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL 476
           +       ++ + L    +       +S L+ L  L  + N +     S L    ++  L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 477 DLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505
               NQ +   P  L + +++  + LN+ 
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488
            LG   +   +S   + L  +  L      +      G+    +L +++ S+NQ T   P
Sbjct: 28  VLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP 83

Query: 489 DSLTSSSKLQ 498
             L + +KL 
Sbjct: 84  --LKNLTKLV 91

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 454 NLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
           +L  N + GTLP GL Q + L  L++S N   G IP              NN  L G
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 7e-08
 Identities = 19/94 (20%), Positives = 38/94 (40%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454
           + +  D        A   +     K   +  ++ +DL +  + G +   ++ L  L +LN
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 455 LSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIP 488
           +S N+L G +P G   Q       ++N+     P
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 37/137 (27%)

Query: 376 PEQVIAMRALKESLRVPDRM-GWN--GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLG 432
           P+   A+  +K+ L  P  +  W    D C  T    W G+ C  +              
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT----WLGVLCDTD-------------- 46

Query: 433 SQGLKGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDN-QFTGSIP 488
                       +    + NL+LS  +L     +PS L     L  L +       G IP
Sbjct: 47  ------------TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 489 DSLTSSSKLQLVLLNNN 505
            ++   ++L  + + + 
Sbjct: 95  PAIAKLTQLHYLYITHT 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 477 DLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 513
           DL +N+  G++P  LT    L  + ++ N L G +P+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 3e-08
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 10/131 (7%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454
             W           +        N+    + IS   L   G++          S L  L 
Sbjct: 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 375

Query: 455 LSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS-----SKLQLVLLNN 504
           L+   +  +    L + L    SL  LDLS+N    +    L  S       L+ ++L +
Sbjct: 376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 435

Query: 505 NLLEGRVPEEL 515
                 + + L
Sbjct: 436 IYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 5e-07
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 12/118 (10%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454
           +  + +                P      + ++  D+        ++  +    +L  L+
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELD 403

Query: 455 LSTNSLGGTLPSGLGQQ------SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           LS N LG      L +        L +L L D  ++  + D L       L     +L
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ-----ALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 426 ISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLS 479
           I  +D+  + L     ++ + LL     + L    L       + S L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 480 DNQFTGSIPDSLTS---SSKLQLVLLN 503
            N+        +     +   ++  L+
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 449 NLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTG----SIPDSLTSSSKLQLVLL 502
           ++ +L++    L     + L    Q    + L D   T      I  +L  +  L  + L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 503 NNNLLEGRVPEEL 515
            +N L       +
Sbjct: 63  RSNELGDVGVHCV 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 447 LSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
             +L  LN+S N L   LP+      L RL  S N     +P+   +   L+ + +  N 
Sbjct: 283 PPSLEELNVSNNKL-IELPALPP--RLERLIASFNHLA-EVPELPQN---LKQLHVEYNP 335

Query: 507 LEGRVPEELYSIG 519
           L    P+   S+ 
Sbjct: 336 LRE-FPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499
           + +  +L   L  L  S N L   +P     Q+L +L +  N      PD   S   L++
Sbjct: 296 LIELPALPPRLERLIASFNHLA-EVPELP--QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG-SI 487
           +DL  + L   ++ ++ L   ++      + +   L        +  +DLS++     ++
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 488 PDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
              L+  SKLQ + L    L   +   L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTL 91

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502
           ++S +++ + +N    +L   LP  L +     L LS+N        +L   ++L  + L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK-DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 503 NNN 505
           +  
Sbjct: 63  DRA 65

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503
            L  +   L+L  N +           ++L  L L +N+ +   P +     KL+ + L+
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 504 NNLLEG 509
            N L+ 
Sbjct: 88  KNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 11/177 (6%)

Query: 340 NLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIA-MRALKE------SLRVP 392
           +L + ++T ++       L   L    L+ N +S +     A +  L+        L+  
Sbjct: 37  DLQNNKIT-EIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 393 DRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVN 452
                        + +    +          +++ ++        G  +     +  L  
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 453 LNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509
           + ++  ++  T+P GL   SL  L L  N+ T     SL   + L  + L+ N +  
Sbjct: 155 IRIADTNIT-TIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484
            + +DL +  +          L NL  L L  N +    P        L RL LS NQ  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 485 GSIPDSLTSSSKLQLVLLNNNL 506
             +P+ +  + + +L +  N +
Sbjct: 93  -ELPEKMPKTLQ-ELRVHENEI 112

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 463 TLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515
            +P  L       LDL +N+ T        +   L  ++L NN +    P   
Sbjct: 24  KVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSN--LVN 452
           +    D        +   I      +   + ++   L ++G    + D  S L N  L  
Sbjct: 219 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-AVVDAFSKLENIGLQT 277

Query: 453 LNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506
           L L  N +       L          L+ L+L+ N+F     D +    ++        L
Sbjct: 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGEL 336

Query: 507 LEGRVPEE 514
            E    EE
Sbjct: 337 DELDDMEE 344

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 430 DLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-----QSLVRLDLSDNQFT 484
            + ++  K   +  +    ++  + LS N++G      L +     + L   + SD    
Sbjct: 14  AITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 485 GSIPDSLTSSSKLQLVLLNNNLL 507
               +   +   L   LL    L
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG----SIPDSLTSSSKL 497
           + S+    + L+  T     ++ + L +  S+  + LS N         + +++ S   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 498 QLVLLNNN 505
           ++   ++ 
Sbjct: 62  EIAEFSDI 69

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 449 NLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508
            L  L L+ N       +      L +   S ++   S+P  L   +   L  L  N L+
Sbjct: 226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQ 282

Query: 509 G 509
           G
Sbjct: 283 G 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	533
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.19
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.14
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.85
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.84
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.45
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.26
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.33
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	97.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.22
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	87.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.71

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=5.3e-19  Score=175.19  Aligned_cols=152  Identities=23%  Similarity=0.402  Sum_probs=132.0

Q ss_pred             CChhHHHHHHHHHHhcCCCCC-CCCC--CCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc--ccchhhhccC
Q 009515          374 TVPEQVIAMRALKESLRVPDR-MGWN--GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLLS  448 (533)
Q Consensus       374 ~~p~~~~~l~~lk~~~~~~~~-~~w~--gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g--~~p~~l~~L~  448 (533)
                      +.|+|..||+++|+.+..+.. .+|.  +|+|.    +.|.||.|+...  ...+++.|+|+++++.|  .+|+++++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~----~~w~gv~C~~~~--~~~~v~~L~L~~~~l~g~~~lp~~l~~L~   76 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC----CcCCCeEEeCCC--CcEEEEEEECCCCCCCCCCCCChHHhcCc
Confidence            679999999999998865543 4785  36663    479999998643  22469999999999998  5899999999


Q ss_pred             CCCEEEccC-CCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEE
Q 009515          449 NLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFE  526 (533)
Q Consensus       449 ~L~~L~Ls~-N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~  526 (533)
                      +|++|+|++ |+++|.+|+.+++ ++|++|+|++|++.+..|..+..+.+|+.++++.|++.+.+|..+..+.. |+.++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~-L~~l~  155 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEE
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc-cceee
Confidence            999999997 8999999999999 99999999999999988888889999999999999999899999988876 89999


Q ss_pred             ccCCCC
Q 009515          527 YVKTPN  532 (533)
Q Consensus       527 ls~N~l  532 (533)
                      +++|.+
T Consensus       156 l~~n~l  161 (313)
T d1ogqa_         156 FDGNRI  161 (313)
T ss_dssp             CCSSCC
T ss_pred             cccccc
Confidence            999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=5.8e-15  Score=135.21  Aligned_cols=129  Identities=16%  Similarity=0.222  Sum_probs=107.8

Q ss_pred             CCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCcccc-chhhhccCCCCEEEccCCCCCCCCCCccCC-CCcc
Q 009515          402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYI-SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV  474 (533)
Q Consensus       402 c~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~  474 (533)
                      |...+.|.|..|.|...+...     +..++.|+|++|.|++.+ +..|.++++|+.|+|++|++.+..+..+.. ++|+
T Consensus         2 CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            544555889999998665332     236889999999998755 566899999999999999999777778887 9999


Q ss_pred             EEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515          475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       475 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l  532 (533)
                      .|+|++|++++..|..|.++++|++|+|++|+|+ .+|+. +..+. +|++|+|++|++
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~-~L~~l~L~~N~~  138 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLN-SLTSLNLASNPF  138 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCT-TCCEEECTTCCB
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCc-cccccccccccc
Confidence            9999999999777888999999999999999999 56655 45555 499999999986

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-14  Score=139.39  Aligned_cols=195  Identities=18%  Similarity=0.189  Sum_probs=142.9

Q ss_pred             eEEEEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEec-ccchhhhhhccccccccCCCCCCChhHHHHHHH
Q 009515          306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLV-PVVGAALISGLENYALVPNDLSTVPEQVIAMRA  384 (533)
Q Consensus       306 R~F~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~-~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~  384 (533)
                      +.+.|..+++.++.++  .   .. +  ..++.+++++|+++ .++ .....  +..++.+.+..|.++++|.. ..+..
T Consensus        11 ~~~~v~C~~~~L~~iP--~---~l-p--~~l~~L~Ls~N~i~-~l~~~~f~~--l~~L~~L~L~~N~l~~l~~~-~~l~~   78 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALP--P---DL-P--KDTTILHLSENLLY-TFSLATLMP--YTRLTQLNLDRAELTKLQVD-GTLPV   78 (266)
T ss_dssp             TCCEEECTTSCCSSCC--S---CC-C--TTCCEEECTTSCCS-EEEGGGGTT--CTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred             CCeEEEccCCCCCeeC--c---Cc-C--cCCCEEECcCCcCC-CcCHHHhhc--cccccccccccccccccccc-ccccc
Confidence            3356778887666542  1   11 1  24678899999998 444 34555  77889999999888877653 23333


Q ss_pred             HHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCC
Q 009515          385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL  464 (533)
Q Consensus       385 lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~i  464 (533)
                      |+... +..    +          ....   .......++.|+.|++++|.+....+..+..+.+|+.|++++|.++...
T Consensus        79 L~~L~-Ls~----N----------~l~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          79 LGTLD-LSH----N----------QLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             CCEEE-CCS----S----------CCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccccc-ccc----c----------cccc---cccccccccccccccccccccceeeccccccccccccccccccccceec
Confidence            33221 111    0          0110   0111223345889999999999888888999999999999999999444


Q ss_pred             CCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          465 PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       465 P~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      +..+.. ++|+.|++++|++++..+..+..+++|++|+|++|+|+ .+|+.++.+.. |+.|+|++|++
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~-L~~L~L~~Np~  207 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGNPW  207 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC-CSEEECCSCCB
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC-CCEEEecCCCC
Confidence            444455 99999999999999877788999999999999999999 99999998876 99999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.45  E-value=3.6e-15  Score=147.17  Aligned_cols=175  Identities=22%  Similarity=0.269  Sum_probs=126.3

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCC-CCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDL-STVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~-~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv  413 (533)
                      .+..++++.|.+...+|..+..  +..++.+.+..+.+ +.+|+.+..+..+...+....              +...+.
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~--l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~--------------n~l~~~  189 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISS--LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR--------------NRLTGK  189 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS--------------SEEEEE
T ss_pred             hhcccccccccccccCchhhcc--Ccccceeecccccccccccccccccccccccccccc--------------cccccc
Confidence            4556667777777677766666  66677777776654 355554433333211111100              011111


Q ss_pred             eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515          414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT  492 (533)
Q Consensus       414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~  492 (533)
                      .-  .....+ ....++++++...|.+|..+..+++|+.|++++|.+++.+| .+.. ++|+.|+|++|+++|.+|+.++
T Consensus       190 ~~--~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         190 IP--PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             CC--GGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             cc--cccccc-ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHh
Confidence            10  001111 23468999999999999999999999999999999998766 5677 9999999999999999999999


Q ss_pred             CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCC
Q 009515          493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +|++|+.|+|++|+|+|.+|. ++++.. |+.+++++|+
T Consensus       266 ~L~~L~~L~Ls~N~l~g~iP~-~~~L~~-L~~l~l~~N~  302 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQR-FDVSAYANNK  302 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC-STTGGG-SCGGGTCSSS
T ss_pred             CCCCCCEEECcCCcccccCCC-cccCCC-CCHHHhCCCc
Confidence            999999999999999999995 566665 9999999997

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.8e-13  Score=113.83  Aligned_cols=99  Identities=26%  Similarity=0.357  Sum_probs=82.5

Q ss_pred             EEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeeccc
Q 009515          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL  506 (533)
Q Consensus       428 ~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~  506 (533)
                      .|+|++|+++ .++ .+..+++|++|++++|+++ .+|+.+.. ++|+.|++++|+++ .+| .++.+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            5889999998 454 4889999999999999998 78888888 99999999999998 566 48899999999999999


Q ss_pred             CcccCc--hhHHhcccCCcEEEccCCCCC
Q 009515          507 LEGRVP--EELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       507 l~g~lP--~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++ .+|  ..+..+.. |+.|++++|+++
T Consensus        77 i~-~~~~~~~l~~~~~-L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQ-QSAAIQPLVSCPR-LVLLNLQGNSLC  103 (124)
T ss_dssp             CC-SSSTTGGGGGCTT-CCEEECTTSGGG
T ss_pred             cC-CCCCchhhcCCCC-CCEEECCCCcCC
Confidence            98 555  35666665 999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-12  Score=126.52  Aligned_cols=108  Identities=21%  Similarity=0.224  Sum_probs=95.3

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      ..|+.+++++|++++..+..|..+++|+.|++++|++++..+..+.. ++|+.+++++|++++..|..|.++++|++|++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            45788999999999777788999999999999999999666666777 99999999999999999999999999999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      ++|++.+..|..+..+.. |+.|++++|++
T Consensus       209 ~~N~i~~~~~~~~~~~~~-L~~L~l~~N~l  237 (284)
T d1ozna_         209 FANNLSALPTEALAPLRA-LQYLRLNDNPW  237 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTT-CCEEECCSSCE
T ss_pred             cccccccccccccccccc-cCEEEecCCCC
Confidence            999999655566667665 99999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.1e-12  Score=110.31  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .+++|+|++|+++ .++..+..+++|+.|+|++|.++ .++ .+.. ++|+.|++++|+++...+..+..+++|+.|+|+
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            4788999999988 45666678889999999999988 664 4666 889999999999884434445678899999999


Q ss_pred             cccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPE--ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l  532 (533)
                      +|+++ .++.  .+..+.. |+.|++++|++
T Consensus        96 ~N~i~-~~~~l~~l~~l~~-L~~L~l~~N~i  124 (162)
T d1a9na_          96 NNSLV-ELGDLDPLASLKS-LTYLCILRNPV  124 (162)
T ss_dssp             SCCCC-CGGGGGGGGGCTT-CCEEECCSSGG
T ss_pred             ccccc-ccccccccccccc-cchhhcCCCcc
Confidence            99887 5553  4566665 89999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.4e-11  Score=118.21  Aligned_cols=170  Identities=22%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             EeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeec
Q 009515          338 AKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCH  416 (533)
Q Consensus       338 ~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~  416 (533)
                      .++.+++.|+ ++|+.+.    ..++.+++..|.+..+|.+ +..+.+|+..... .              +....+.- 
T Consensus        14 ~v~C~~~~L~-~iP~~lp----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~-~--------------N~l~~l~~-   72 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-R--------------AELTKLQV-   72 (266)
T ss_dssp             EEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT-T--------------SCCCEEEC-
T ss_pred             EEEccCCCCC-eeCcCcC----cCCCEEECcCCcCCCcCHHHhhccccccccccc-c--------------cccccccc-
Confidence            3567788887 6776553    3578899999998888864 3444555443221 1              11222221 


Q ss_pred             CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCc
Q 009515          417 PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS  495 (533)
Q Consensus       417 ~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~  495 (533)
                         ...++.|+.|+|++|++++ ++..+..+++|+.|++++|.+.+..+..+.. .+++.|++++|.+++..+..+..++
T Consensus        73 ---~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~  148 (266)
T d1p9ag_          73 ---DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (266)
T ss_dssp             ---CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ---ccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccc
Confidence               1234568999999999984 5778999999999999999999555555556 9999999999999966666778899


Q ss_pred             CCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          496 KLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       496 ~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +|+.|++++|++++..+..+..+.. |+.|+|++|+|.
T Consensus       149 ~l~~l~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~L~  185 (266)
T d1p9ag_         149 KLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQENSLY  185 (266)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred             cchhcccccccccccCccccccccc-cceeecccCCCc
Confidence            9999999999999544444555555 999999999873

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=5.5e-11  Score=108.12  Aligned_cols=102  Identities=25%  Similarity=0.424  Sum_probs=87.2

Q ss_pred             EEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515          427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN  504 (533)
Q Consensus       427 ~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~  504 (533)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.++.. +.. ++|+.|+|++|++.+..+..+..+++|+.|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46899999999 6777663  78999999999998766554 455 9999999999999988899999999999999999


Q ss_pred             ccCcccCchh-HHhcccCCcEEEccCCCCC
Q 009515          505 NLLEGRVPEE-LYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       505 N~l~g~lP~~-l~~l~~~L~~L~ls~N~l~  533 (533)
                      |+++ .+|+. +.++.. |++|+|++|+|.
T Consensus        88 N~l~-~l~~~~F~~l~~-L~~L~L~~N~l~  115 (192)
T d1w8aa_          88 NKIK-EISNKMFLGLHQ-LKTLNLYDNQIS  115 (192)
T ss_dssp             CCCC-EECSSSSTTCTT-CCEEECCSSCCC
T ss_pred             cccc-ccCHHHHhCCCc-ccccccCCcccc
Confidence            9999 56554 566665 999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.2e-11  Score=117.79  Aligned_cols=198  Identities=14%  Similarity=0.092  Sum_probs=140.6

Q ss_pred             EEEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEeccc-chhhhhhccccccccCCCCCCChhHHHHH-HHH
Q 009515          308 FDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPV-VGAALISGLENYALVPNDLSTVPEQVIAM-RAL  385 (533)
Q Consensus       308 F~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~-~~~~iLn~lEi~~l~~~~~~~~p~~~~~l-~~l  385 (533)
                      +.|..++..++.++      ...+  ...+.+++++|+++ .+++. ...  +..++.++++.+.+..++...... ..+
T Consensus        14 ~~v~c~~~~L~~iP------~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~--l~~L~~L~ls~n~l~~i~~~~~~~~~~~   82 (284)
T d1ozna_          14 VTTSCPQQGLQAVP------VGIP--AASQRIFLHGNRIS-HVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALL   82 (284)
T ss_dssp             CEEECCSSCCSSCC------TTCC--TTCSEEECTTSCCC-EECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             eEEEcCCCCCCccC------CCCC--CCCCEEECcCCcCC-CCCHHHhhc--cccccccccccccccccccccccccccc
Confidence            46777776555442      1111  13567889999998 67653 555  778999999888877665543211 111


Q ss_pred             HHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCC
Q 009515          386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP  465 (533)
Q Consensus       386 k~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP  465 (533)
                      +.......  .            ....+.  +.....+.+|+.|++++|.+....+..+..+.+|+.+++++|++++..+
T Consensus        83 ~~l~~~~~--~------------~~~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          83 EQLDLSDN--A------------QLRSVD--PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (284)
T ss_dssp             CEEECCSC--T------------TCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccccc--c------------cccccc--chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence            11000000  0            000110  1112233468899999999998788889999999999999999995445


Q ss_pred             CccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          466 SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       466 ~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ..+.. ++|+.|+|++|++++..|..+.++++|+.+++++|++++..|..+..+.+ |+.|++++|.+.
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~-L~~L~l~~N~i~  214 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR-LMTLYLFANNLS  214 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCS
T ss_pred             hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh-cccccccccccc
Confidence            56666 99999999999999877888999999999999999999877888888776 999999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=4.7e-11  Score=116.47  Aligned_cols=108  Identities=20%  Similarity=0.315  Sum_probs=93.6

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ...++.|++++|...+..+..+..++.++.|++++|.+++..+..+.. ++|++|+|++|+++ .+|+.+..+++|+.|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            345889999999999999999999999999999999999776777777 99999999999999 8899999999999999


Q ss_pred             eecccCcccCchhHHh------cccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPEELYS------IGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~------l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .++...+.      ...+|+.|+|++|++
T Consensus       249 Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         249 LHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            9999998 77654322      223589999999986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-10  Score=102.43  Aligned_cols=98  Identities=17%  Similarity=0.118  Sum_probs=65.6

Q ss_pred             eCCCCCccccchhhhccCCCCEEEccCCC-CCCCCC-CccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccC
Q 009515          431 LGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL  507 (533)
Q Consensus       431 Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~iP-~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l  507 (533)
                      .+++++. .+|..+..+++|+.|++++|+ ++ .++ ..+.. ++|+.|+|++|+++...|..|..+++|+.|+|++|++
T Consensus        15 c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          15 CTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             ecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence            3344443 345666677777777776553 66 444 34555 7777777777777755566677777777777777777


Q ss_pred             cccCchhHHhcccCCcEEEccCCCC
Q 009515          508 EGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       508 ~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      + .+|..++.... |+.|+|++|++
T Consensus        93 ~-~l~~~~~~~~~-l~~L~L~~Np~  115 (156)
T d2ifga3          93 E-SLSWKTVQGLS-LQELVLSGNPL  115 (156)
T ss_dssp             S-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred             c-ccChhhhcccc-ccccccCCCcc
Confidence            7 67777666554 77777777775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=5.4e-10  Score=93.96  Aligned_cols=100  Identities=23%  Similarity=0.323  Sum_probs=80.8

Q ss_pred             ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCCC
Q 009515          422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKLQ  498 (533)
Q Consensus       422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~  498 (533)
                      .+..|++|++++|.++ .+|+.++.+++|+.|++++|.++ .+| .+.. ++|+.|++++|+++ .+|  ..++.+++|+
T Consensus        18 ~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          18 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCC
T ss_pred             cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccC-CCCCchhhcCCCCCC
Confidence            3445899999999998 67888999999999999999998 565 4777 99999999999999 444  4688999999


Q ss_pred             EEEeecccCcc--cCchhHHhcccCCcEE
Q 009515          499 LVLLNNNLLEG--RVPEELYSIGVHGGAF  525 (533)
Q Consensus       499 ~L~L~~N~l~g--~lP~~l~~l~~~L~~L  525 (533)
                      .|++++|+++.  .++..+.....+|+.|
T Consensus        94 ~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          94 LLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999973  2345554443446655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=6.1e-10  Score=108.35  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc-------cCCCCcC
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-------SLTSSSK  496 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~-------~~~~l~~  496 (533)
                      .++.|++++|.+.+..+..+.++++|+.|+|++|+++ .+|..+.. ++|++|+|++|+++ .++.       ....+.+
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCC
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCC
Confidence            4667778888887777777777888888888888877 67777777 78888888888777 4442       2234567


Q ss_pred             CCEEEeecccCc-ccCchhHHhcc
Q 009515          497 LQLVLLNNNLLE-GRVPEELYSIG  519 (533)
Q Consensus       497 L~~L~L~~N~l~-g~lP~~l~~l~  519 (533)
                      |+.|+|++|.++ +.+++..+.+.
T Consensus       274 L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         274 YSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             CSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             CCEEECCCCcCccCcCCHhHhccc
Confidence            778888888774 56666665553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.4e-09  Score=92.67  Aligned_cols=99  Identities=23%  Similarity=0.263  Sum_probs=79.9

Q ss_pred             CCcceeecCCC-------CCceeEEEEEEeCCC-CCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEcc
Q 009515          409 AWEGITCHPNK-------DETAVVISQIDLGSQ-GLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS  479 (533)
Q Consensus       409 ~w~gv~c~~~~-------~~~~~~L~~L~Ls~n-~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls  479 (533)
                      .+.++.|....       ...+.++++|++++| .++...+..|.++++|+.|+|++|+|+..-|..+.. ++|+.|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            46678886433       223457889999876 488766778999999999999999999555666777 999999999


Q ss_pred             CCccccCCCccCCCCcCCCEEEeecccCc
Q 009515          480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (533)
Q Consensus       480 ~N~l~g~iP~~~~~l~~L~~L~L~~N~l~  508 (533)
                      +|+++ .+|..+....+|+.|+|++|.+.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99999 77776666668999999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.7e-09  Score=95.35  Aligned_cols=87  Identities=16%  Similarity=0.149  Sum_probs=73.0

Q ss_pred             hhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccC
Q 009515          443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH  521 (533)
Q Consensus       443 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~  521 (533)
                      .+.++..|+.|+|++|+++ .+|..... ++|+.|+|++|+++ .++ .+..+++|+.|++++|+++ .+|..++....+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccc
Confidence            3567788999999999998 77766566 99999999999999 664 5889999999999999999 677766543334


Q ss_pred             CcEEEccCCCCC
Q 009515          522 GGAFEYVKTPNC  533 (533)
Q Consensus       522 L~~L~ls~N~l~  533 (533)
                      |+.|++++|++.
T Consensus        89 L~~L~L~~N~i~  100 (162)
T d1a9na_          89 LTELILTNNSLV  100 (162)
T ss_dssp             CCEEECCSCCCC
T ss_pred             cccceecccccc
Confidence            999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=1.8e-09  Score=98.31  Aligned_cols=92  Identities=23%  Similarity=0.339  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|+++++.+...  +.+..+++|+.|++++|++. .++ .+.. ++|+.|++++|++++ ++ .++++++|+.|+++
T Consensus       107 ~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls  180 (199)
T d2omxa2         107 NLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDIS  180 (199)
T ss_dssp             TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECC
T ss_pred             ccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECC
Confidence            467788888777642  34778888888888888886 444 4666 888888888888884 44 37888888888888


Q ss_pred             cccCcccCchhHHhcccCCcEE
Q 009515          504 NNLLEGRVPEELYSIGVHGGAF  525 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L  525 (533)
                      +|+++ .+| .+..+.. |+.|
T Consensus       181 ~N~i~-~i~-~l~~L~~-L~~L  199 (199)
T d2omxa2         181 SNKVS-DIS-VLAKLTN-LESL  199 (199)
T ss_dssp             SSCCC-CCG-GGGGCTT-CSEE
T ss_pred             CCCCC-CCc-cccCCCC-CCcC
Confidence            88888 565 4666654 7665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.79  E-value=5.7e-11  Score=108.69  Aligned_cols=103  Identities=20%  Similarity=0.235  Sum_probs=85.3

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +..|+.|+|++|.++ .++ .+..|++|+.|+|++|.++ .+|..... ++|+.|++++|+++ .++ .+..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccc
Confidence            456889999999998 454 5999999999999999998 77765555 78999999999998 454 477889999999


Q ss_pred             eecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515          502 LNNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       502 L~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l  532 (533)
                      |++|+++ .++.  .+..+.. |+.|++++|++
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~-L~~L~L~~N~l  152 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDK-LEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTT-CSEEEECSSHH
T ss_pred             cccchhc-cccccccccCCCc-cceeecCCCcc
Confidence            9999998 5653  4666665 99999999975

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=2.8e-09  Score=106.36  Aligned_cols=97  Identities=19%  Similarity=0.282  Sum_probs=81.0

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .++.+.+..|.+.+  ...+..+++++.|++++|++++. + .+.. ++|+.|++++|+++ .+| .+++|++|++|+|+
T Consensus       286 ~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         286 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECC
T ss_pred             cccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECC
Confidence            35678888898885  34588999999999999999954 3 3666 99999999999998 455 68999999999999


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKT  530 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N  530 (533)
                      +|++++ +++ +.++.+ |+.|++++|
T Consensus       360 ~N~l~~-l~~-l~~l~~-L~~L~L~~N  383 (384)
T d2omza2         360 HNQISD-LTP-LANLTR-ITQLGLNDQ  383 (384)
T ss_dssp             SSCCCB-CGG-GTTCTT-CSEEECCCE
T ss_pred             CCcCCC-Chh-hccCCC-CCEeeCCCC
Confidence            999994 554 777765 999999998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=4.1e-09  Score=97.90  Aligned_cols=164  Identities=18%  Similarity=0.240  Sum_probs=106.6

Q ss_pred             eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515          333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG  412 (533)
Q Consensus       333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g  412 (533)
                      ...++.+++++|+++ .+.+ ...  +..++.+.+..+..+.++. +..+..++.. ...        .      +...+
T Consensus        62 l~~L~~L~ls~n~i~-~~~~-l~~--l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l-~l~--------~------~~~~~  121 (227)
T d1h6ua2          62 LNNLIGLELKDNQIT-DLAP-LKN--LTKITELELSGNPLKNVSA-IAGLQSIKTL-DLT--------S------TQITD  121 (227)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GTT--CCSCCEEECCSCCCSCCGG-GTTCTTCCEE-ECT--------T------SCCCC
T ss_pred             CCCCcEeecCCceee-cccc-ccc--ccccccccccccccccccc-cccccccccc-ccc--------c------ccccc
Confidence            346777888888776 3332 233  5667777777666655542 2222222110 000        0      11111


Q ss_pred             eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515          413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL  491 (533)
Q Consensus       413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~  491 (533)
                      +.+..    ....+..+.++.+.+...  ..+..+++|+.|++++|.++.. + .+.. ++|+.|+|++|+++ .+|. +
T Consensus       122 ~~~~~----~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~-~l~~-l  191 (227)
T d1h6ua2         122 VTPLA----GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKIS-DISP-L  191 (227)
T ss_dssp             CGGGT----TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-G
T ss_pred             cchhc----cccchhhhhchhhhhchh--hhhccccccccccccccccccc-h-hhcccccceecccCCCccC-CChh-h
Confidence            11111    112356678888887743  3478889999999999999733 3 3667 99999999999998 4554 8


Q ss_pred             CCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccC
Q 009515          492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVK  529 (533)
Q Consensus       492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~  529 (533)
                      +++++|++|+|++|+++ .+|. +..+.. |+.|++++
T Consensus       192 ~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~-L~~L~lsn  226 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQIS-DVSP-LANTSN-LFIVTLTN  226 (227)
T ss_dssp             GGCTTCCEEECTTSCCC-BCGG-GTTCTT-CCEEEEEE
T ss_pred             cCCCCCCEEECcCCcCC-CCcc-cccCCC-CCEEEeeC
Confidence            89999999999999999 6764 777765 99999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=3e-09  Score=97.76  Aligned_cols=96  Identities=24%  Similarity=0.323  Sum_probs=76.7

Q ss_pred             EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515          425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN  503 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~  503 (533)
                      .|+.|++++|.+..  .+.+..++.|+.++++.|.+++  +..+.. ++|+.+++++|++++ ++. +.++++|+.|+|+
T Consensus       113 ~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         113 KLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLS  186 (210)
T ss_dssp             TCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             cccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECC
Confidence            37778888888763  3468889999999999999873  334556 899999999999984 543 8889999999999


Q ss_pred             cccCcccCchhHHhcccCCcEEEccC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVK  529 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~  529 (533)
                      +|+++ .+| .+..+.+ |+.|+|++
T Consensus       187 ~N~i~-~l~-~l~~l~~-L~~L~Ls~  209 (210)
T d1h6ta2         187 KNHIS-DLR-ALAGLKN-LDVLELFS  209 (210)
T ss_dssp             SSCCC-BCG-GGTTCTT-CSEEEEEE
T ss_pred             CCCCC-CCh-hhcCCCC-CCEEEccC
Confidence            99998 677 4777766 99999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=1.8e-08  Score=92.40  Aligned_cols=102  Identities=22%  Similarity=0.247  Sum_probs=76.9

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      +++|+.|++++|++++ ++ .+..+++|+.|++++|.+. .++ .+.. ++|+.++++.|++++  +..+..+++|+.++
T Consensus        89 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2          89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             Cccccccccccccccc-cc-ccccccccccccccccccc-ccc-cccccccccccccccccccc--cccccccccccccc
Confidence            3457778888888774 43 4777888888888888776 333 4555 788888888888873  33567789999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|+++ .++. +..+.. |+.|++++|++.
T Consensus       163 l~~n~l~-~i~~-l~~l~~-L~~L~Ls~N~i~  191 (210)
T d1h6ta2         163 LEDNQIS-DIVP-LAGLTK-LQNLYLSKNHIS  191 (210)
T ss_dssp             CCSSCCC-CCGG-GTTCTT-CCEEECCSSCCC
T ss_pred             ccccccc-cccc-ccCCCC-CCEEECCCCCCC
Confidence            9999998 5654 777766 999999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=3.2e-08  Score=89.81  Aligned_cols=102  Identities=21%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515          423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL  501 (533)
Q Consensus       423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~  501 (533)
                      ++.|+.|++++|.+.. ++ .+.+++.|+.|++++|.... + ..+.. ++|+.|++++|++. .+| .+..+++|+.|+
T Consensus        83 l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~  156 (199)
T d2omxa2          83 LTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLN  156 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             Cccccccccccccccc-cc-cccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-cccccccccccc
Confidence            3457777888777763 33 37777888888888877763 2 23556 88999999999887 454 578889999999


Q ss_pred             eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +.+|+++ .++. +.++.. |+.|++++|++.
T Consensus       157 l~~n~l~-~l~~-l~~l~~-L~~L~ls~N~i~  185 (199)
T d2omxa2         157 FSSNQVT-DLKP-LANLTT-LERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCC-CCGG-GTTCTT-CCEEECCSSCCC
T ss_pred             ccccccc-CCcc-ccCCCC-CCEEECCCCCCC
Confidence            9999998 5653 777766 999999999863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=3.9e-08  Score=91.02  Aligned_cols=166  Identities=17%  Similarity=0.158  Sum_probs=111.8

Q ss_pred             eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515          335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT  414 (533)
Q Consensus       335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~  414 (533)
                      .++.+.+.++.++ .+. .+..  +..++.+++..+.+..+++ +..+..++..         ....|      ....+.
T Consensus        42 ~L~~L~l~~~~i~-~l~-~l~~--l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l---------~~~~n------~~~~i~  101 (227)
T d1h6ua2          42 GITTLSAFGTGVT-TIE-GVQY--LNNLIGLELKDNQITDLAP-LKNLTKITEL---------ELSGN------PLKNVS  101 (227)
T ss_dssp             TCCEEECTTSCCC-CCT-TGGG--CTTCCEEECCSSCCCCCGG-GTTCCSCCEE---------ECCSC------CCSCCG
T ss_pred             CcCEEECCCCCCC-cch-hHhc--CCCCcEeecCCceeecccc-cccccccccc---------ccccc------cccccc
Confidence            5667778888776 453 3444  7778888888887766543 1111111100         00011      111111


Q ss_pred             ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515          415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS  493 (533)
Q Consensus       415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~  493 (533)
                      .    ...+..|+.+.++.+...+.  ..+.....++.+.++.+.+....  .+.. ++|+.|++++|++... + .+++
T Consensus       102 ~----l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~-~l~~  171 (227)
T d1h6ua2         102 A----IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-T-PLAN  171 (227)
T ss_dssp             G----GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-G-GGTT
T ss_pred             c----cccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc-h-hhcc
Confidence            1    11234578889988887753  34677888999999999887432  3455 8999999999999843 3 3889


Q ss_pred             CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      +++|+.|+|++|+++ .+|. +..+.. |+.|++++|++.
T Consensus       172 l~~L~~L~Ls~n~l~-~l~~-l~~l~~-L~~L~Ls~N~lt  208 (227)
T d1h6ua2         172 LSKLTTLKADDNKIS-DISP-LASLPN-LIEVHLKNNQIS  208 (227)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GGGCTT-CCEEECTTSCCC
T ss_pred             cccceecccCCCccC-CChh-hcCCCC-CCEEECcCCcCC
Confidence            999999999999999 5765 777776 999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=7.3e-08  Score=89.79  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=80.9

Q ss_pred             CCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEcc-
Q 009515          408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLS-  479 (533)
Q Consensus       408 ~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls-  479 (533)
                      |....+.|...+...     ...++.|+|++|.++...+..|.++++|++|++++|.+...+|.. +.. +.++.+.+. 
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            677788897654222     236899999999999666667999999999999999998766654 445 888888876 


Q ss_pred             CCccccCCCccCCCCcCCCEEEeecccCc
Q 009515          480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLE  508 (533)
Q Consensus       480 ~N~l~g~iP~~~~~l~~L~~L~L~~N~l~  508 (533)
                      .|++....+..+.++++|+.|++.+|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence            46788777778889999999999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.45  E-value=7e-09  Score=94.40  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHh
Q 009515          439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS  517 (533)
Q Consensus       439 ~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~  517 (533)
                      .++.++..|++|++|+|++|+++ .++ .+.. ++|+.|+|++|+++ .+|.....+++|+.|++++|+++ .++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccc
Confidence            46778999999999999999998 665 5777 99999999999998 78866666778999999999999 665 4777


Q ss_pred             cccCCcEEEccCCCCC
Q 009515          518 IGVHGGAFEYVKTPNC  533 (533)
Q Consensus       518 l~~~L~~L~ls~N~l~  533 (533)
                      +.. |+.|++++|++.
T Consensus       114 l~~-L~~L~L~~N~i~  128 (198)
T d1m9la_         114 LVN-LRVLYMSNNKIT  128 (198)
T ss_dssp             HHH-SSEEEESEEECC
T ss_pred             ccc-ccccccccchhc
Confidence            776 999999999763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.41  E-value=2e-07  Score=92.55  Aligned_cols=101  Identities=21%  Similarity=0.283  Sum_probs=84.6

Q ss_pred             eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515          424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL  502 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L  502 (533)
                      +.|+.|+++++.+.+..  .+..+..++.+.++.|.+++ ++ .+.. ++++.|++++|++++. + .+..+++|+.|++
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~-~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L  336 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-IS-PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFF  336 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CG-GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEEC
T ss_pred             ccCCEeeccCcccCCCC--cccccccccccccccccccc-cc-ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEEC
Confidence            35888999999998643  47889999999999999984 33 4556 9999999999999964 4 3888999999999


Q ss_pred             ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515          503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~  533 (533)
                      ++|+++ .+| .+..+.. |++|++++|+|.
T Consensus       337 ~~n~l~-~l~-~l~~l~~-L~~L~l~~N~l~  364 (384)
T d2omza2         337 ANNKVS-DVS-SLANLTN-INWLSAGHNQIS  364 (384)
T ss_dssp             CSSCCC-CCG-GGGGCTT-CCEEECCSSCCC
T ss_pred             CCCCCC-CCh-hHcCCCC-CCEEECCCCcCC
Confidence            999998 566 5888776 999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.26  E-value=9.3e-07  Score=86.13  Aligned_cols=93  Identities=27%  Similarity=0.328  Sum_probs=63.4

Q ss_pred             EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515          426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN  505 (533)
Q Consensus       426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N  505 (533)
                      +++|+|++++++ .+|+.   +++|++|++++|+++ .+|..+  .+|+.|++++|+++ .+++..   +.|++|++++|
T Consensus        40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~--~~L~~L~l~~n~l~-~l~~lp---~~L~~L~L~~n  108 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP--QSLKSLLVDNNNLK-ALSDLP---PLLEYLGVSNN  108 (353)
T ss_dssp             CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC--TTCCEEECCSSCCS-CCCSCC---TTCCEEECCSS
T ss_pred             CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch--hhhhhhhhhhcccc-hhhhhc---ccccccccccc
Confidence            567788888877 46653   457788888888887 677543  56777788888777 554321   35778888888


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCCC
Q 009515          506 LLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .++ .+|. ++.+.. |+.|++++|.+
T Consensus       109 ~l~-~lp~-~~~l~~-L~~L~l~~~~~  132 (353)
T d1jl5a_         109 QLE-KLPE-LQNSSF-LKIIDVDNNSL  132 (353)
T ss_dssp             CCS-SCCC-CTTCTT-CCEEECCSSCC
T ss_pred             ccc-cccc-hhhhcc-ceeeccccccc
Confidence            877 6764 345444 77888777754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.4e-06  Score=78.04  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             EEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCc-cCCCCcCCCEEEee-
Q 009515          428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLN-  503 (533)
Q Consensus       428 ~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~L~-  503 (533)
                      .++.++.+++ .+|+.+.  +++++|++++|+++ .+|. .+.. ++|++|+|++|.+...+|. .+..++.++.+.+. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            5778888888 6777653  68999999999998 6665 4667 9999999999998866554 57889999999886 


Q ss_pred             cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515          504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                      .|++....+..+..+.. |+.|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~l~~-L~~l~l~~~~l  115 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPN-LQYLLISNTGI  115 (242)
T ss_dssp             CTTCCEECTTSEECCTT-CCEEEEESCCC
T ss_pred             ccccccccccccccccc-ccccccchhhh
Confidence            46777555555666665 99999999975

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2e-06  Score=86.70  Aligned_cols=108  Identities=20%  Similarity=0.275  Sum_probs=71.9

Q ss_pred             eEEEEEEeCCCCCccc-cchhhhccCCCCEEEccCCCCCC----CCCCccCC-CCccEEEccCCccccC----CCccCCC
Q 009515          424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTS  493 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g----~iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~~~~  493 (533)
                      ..|+.|+++.|+++.. +..-+..+++|+.|+|++|.++-    .+...+.. ++|+.|+|++|+++..    +.+.+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3588888888888753 24446677888888888888762    22334455 7888888888887521    2222322


Q ss_pred             -CcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515          494 -SSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       494 -l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l  532 (533)
                       ..+|+.|+|++|+++..    ++..+..+.. |+.|++++|++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~-L~~L~L~~N~i  124 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT-LQELHLSDNLL  124 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTT-CCEEECCSSBC
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccc-ccccccccccc
Confidence             24688888888888633    3444444444 88888888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.78  E-value=2.3e-05  Score=75.79  Aligned_cols=74  Identities=22%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             CCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEc
Q 009515          448 SNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEY  527 (533)
Q Consensus       448 ~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~l  527 (533)
                      .+|+.|+|++|.++ .+|+.+  ++|+.|+|++|+++ .+|+.+   .+|+.|++++|+++ .++.    ++..|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~~--~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPELP--PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD----LPPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSCC--TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS----CCTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCCC--CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh----hccccccccc
Confidence            47899999999998 788643  78999999999999 899765   57899999999998 6663    3445899999


Q ss_pred             cCCCCC
Q 009515          528 VKTPNC  533 (533)
Q Consensus       528 s~N~l~  533 (533)
                      ++|++.
T Consensus       106 ~~n~l~  111 (353)
T d1jl5a_         106 SNNQLE  111 (353)
T ss_dssp             CSSCCS
T ss_pred             cccccc
Confidence            999863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=6.5e-06  Score=82.76  Aligned_cols=108  Identities=22%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCCCccccch----hhhccCCCCEEEccCCCCCCC----CCCccCC--CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGSQGLKGYISD----KISLLSNLVNLNLSTNSLGGT----LPSGLGQ--QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~~p~----~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~--~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .|+.++++++.++.....    .+....+|+.|+|++|+++..    ++..+..  +.|+.|+|++|+++..    +.+.
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            367788888888754333    344556899999999988632    3444443  6789999999988742    4455


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHH----hcccCCcEEEccCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELY----SIGVHGGAFEYVKTPN  532 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~----~l~~~L~~L~ls~N~l  532 (533)
                      +..+++|++|+|++|+++..-...+.    .....|+.|++.+|.+
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            66678899999999988744333332    2222488899988876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.46  E-value=1.4e-05  Score=77.99  Aligned_cols=108  Identities=16%  Similarity=0.177  Sum_probs=77.3

Q ss_pred             EEEEEEeCCCCCccc-----cchhhhccCCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccCCCccC---
Q 009515          425 VISQIDLGSQGLKGY-----ISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPDSL---  491 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g~-----~p~~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~---  491 (533)
                      .++.|+|++|++...     +...+..+++|+.|+|++|.++..    +...+.. ++|++|+|++|++++.-...+   
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            478899999998632     445577889999999999998632    3345556 899999999999875422222   


Q ss_pred             -C--CCcCCCEEEeecccCccc----CchhHH-hcccCCcEEEccCCCCC
Q 009515          492 -T--SSSKLQLVLLNNNLLEGR----VPEELY-SIGVHGGAFEYVKTPNC  533 (533)
Q Consensus       492 -~--~l~~L~~L~L~~N~l~g~----lP~~l~-~l~~~L~~L~ls~N~l~  533 (533)
                       .  ....|++|++++|++...    +...+. +.. .|+.|++++|++.
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~-~L~~L~l~~N~~~  315 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGNRFS  315 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT-TCCEEECTTSBSC
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC-CCCEEECCCCcCC
Confidence             2  236799999999998743    333343 333 4999999999863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.2e-06  Score=76.38  Aligned_cols=85  Identities=24%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             ccchhhhccCCCCEEEccCCCCCCCCC---CccCC-CCccEEEccCCccccCCCc-cCCCCcCCCEEEeecccCcccCch
Q 009515          439 YISDKISLLSNLVNLNLSTNSLGGTLP---SGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLVLLNNNLLEGRVPE  513 (533)
Q Consensus       439 ~~p~~l~~L~~L~~L~Ls~N~l~g~iP---~~l~~-~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~L~~N~l~g~lP~  513 (533)
                      .++.....+++|+.|+|++|+++ .++   ..+.. ++|+.|+|++|+++ .+++ ...+..+|+.|++++|.+......
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCccc
Confidence            34445567999999999999998 443   33445 89999999999999 5554 233445799999999999855442


Q ss_pred             h-------HHhcccCCcEEE
Q 009515          514 E-------LYSIGVHGGAFE  526 (533)
Q Consensus       514 ~-------l~~l~~~L~~L~  526 (533)
                      .       +..+++ |+.||
T Consensus       134 ~~~y~~~i~~~~P~-L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPK-LLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTT-CCEET
T ss_pred             chhHHHHHHHHCCC-CCEEC
Confidence            2       333444 88876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=9.9e-06  Score=70.35  Aligned_cols=77  Identities=23%  Similarity=0.186  Sum_probs=57.4

Q ss_pred             eEEEEEEeCCCCCccc--cchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCcc-------CC
Q 009515          424 VVISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDS-------LT  492 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~-------~~  492 (533)
                      +.|+.|+|++|+|+..  ++..+..+++|+.|+|++|.++ .+++ .... .+|+.|++++|.+.......       +.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            4588899999999853  3456788899999999999998 5554 2223 67899999999988655432       45


Q ss_pred             CCcCCCEEE
Q 009515          493 SSSKLQLVL  501 (533)
Q Consensus       493 ~l~~L~~L~  501 (533)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.33  E-value=2.4e-05  Score=76.35  Aligned_cols=108  Identities=23%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             EEEEEEeCCCCCcc----ccchhhhccCCCCEEEccCCCCCCC-----CCCccCC-CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGT-----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~-----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .++.+.++.|.+..    .+...+.....|+.|++++|.++..     +...+.. ++|+.|+|++|.++..    +...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            36778888888763    3455577889999999999998732     3344555 8899999999998633    3455


Q ss_pred             CCCCcCCCEEEeecccCcccCchhHH----hc-ccCCcEEEccCCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEGRVPEELY----SI-GVHGGAFEYVKTPN  532 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g~lP~~l~----~l-~~~L~~L~ls~N~l  532 (533)
                      +..+++|++|+|++|.+++.-...++    .. ...|+.|++++|++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            67889999999999999854333333    22 12489999999986

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.0036  Score=52.37  Aligned_cols=80  Identities=20%  Similarity=0.287  Sum_probs=60.8

Q ss_pred             CcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEeecC
Q 009515           89 KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFA  168 (533)
Q Consensus        89 ~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~~~  168 (533)
                      ...|.+++ +.|.|.|+++|--        ....++.+.+...+..+.       ....-+.+.+.+.++.|.|.|....
T Consensus        64 ~~~f~v~v-PnG~Y~Vtv~~Gd--------~~~~~~~~eg~~~~~~~~-------g~~~~~~~~V~VtDG~L~l~ft~~~  127 (146)
T d2o14a1          64 NNTFNVDL-PNGLYEVKVTLGN--------TARASVAAEGVFQVINMT-------GDGAEDTFQIPVTDGQLNLLVTEGK  127 (146)
T ss_dssp             SCCEEEEC-CSEEEEEEEEESS--------CSEEEEEETTEEEEEEEE-------STTCEEEEEEEECSSEEEEEEEESS
T ss_pred             CceEEEEC-CCCeEEEEEEEec--------CCCccEEEeeEEeccccC-------CccEEEEEEEEEECCeEEEEEecCC
Confidence            35899998 8999999999863        234578888876655542       2234467888899999999998655


Q ss_pred             C-CCceeeeEEEEEcCC
Q 009515          169 T-DPPVIASLEVQQIDP  184 (533)
Q Consensus       169 ~-~~pfIs~iEl~~l~~  184 (533)
                      . ..|-||+|||.+.++
T Consensus       128 ~G~~~~in~l~I~~~~d  144 (146)
T d2o14a1         128 AGTAFTLSALKIKKLSD  144 (146)
T ss_dssp             TTSCCEEEEEEEEEEES
T ss_pred             CCCccEEEEEEEEeccc
Confidence            4 579999999998765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0001  Score=69.84  Aligned_cols=107  Identities=21%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             eEEEEEEeCCCCCccc-cchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC-ccccC-CCccCCCCcCCCE
Q 009515          424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSSKLQL  499 (533)
Q Consensus       424 ~~L~~L~Ls~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~  499 (533)
                      ..|+.|+|+++.+... +...+..+++|++|+++++.++...+..+++ ++|+.|+|+++ +++.. +..-...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4689999999988754 4556788999999999999998888888888 99999999995 55521 2222356889999


Q ss_pred             EEeecc-cCc-ccCchhHHhcccCCcEEEccCC
Q 009515          500 VLLNNN-LLE-GRVPEELYSIGVHGGAFEYVKT  530 (533)
Q Consensus       500 L~L~~N-~l~-g~lP~~l~~l~~~L~~L~ls~N  530 (533)
                      |+++++ .++ ..++..+.....+|+.|++++.
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccccccccccccchhhhcccccccchhhhccc
Confidence            999985 454 2344455555556999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.88  E-value=0.00018  Score=62.34  Aligned_cols=106  Identities=8%  Similarity=0.024  Sum_probs=72.2

Q ss_pred             EEEEEEeCCC-CCccc----cchhhhccCCCCEEEccCCCCCCCCCC----ccCC-CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGSQ-GLKGY----ISDKISLLSNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~iP~----~l~~-~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .|++|+|+++ .+...    +-..+...+.|+.|+|++|.++..-..    .+.. +.|+.|+|++|.++..    +-..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            3788999874 46532    344566778899999999988733222    2334 8899999999998753    2234


Q ss_pred             CCCCcCCCEEEeecccCcc-------cCchhHHhcccCCcEEEccCCC
Q 009515          491 LTSSSKLQLVLLNNNLLEG-------RVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       491 ~~~l~~L~~L~L~~N~l~g-------~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +...+.|++|+|++|.+..       .+...+..... |+.|+++.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~s-L~~l~l~~~~  142 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES-LLRVGISFAS  142 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS-CCEEECCCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCC-ccEeeCcCCC
Confidence            6677889999999886541       13344444444 8899987653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00024  Score=67.18  Aligned_cols=86  Identities=16%  Similarity=0.084  Sum_probs=65.6

Q ss_pred             hhccCCCCEEEccCCCCCCCC-CCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecc-cCccc-CchhHHhcc
Q 009515          444 ISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN-LLEGR-VPEELYSIG  519 (533)
Q Consensus       444 l~~L~~L~~L~Ls~N~l~g~i-P~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N-~l~g~-lP~~l~~l~  519 (533)
                      .....+|++||++++.++... +..+.. ++|++|+|++++++...+..++++++|+.|+++++ .++.. +..-...+.
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            345568999999999987543 333455 99999999999999888888999999999999984 56522 223234455


Q ss_pred             cCCcEEEccCC
Q 009515          520 VHGGAFEYVKT  530 (533)
Q Consensus       520 ~~L~~L~ls~N  530 (533)
                      . |+.|+++++
T Consensus       122 ~-L~~L~ls~c  131 (284)
T d2astb2         122 R-LDELNLSWC  131 (284)
T ss_dssp             T-CCEEECCCC
T ss_pred             h-ccccccccc
Confidence            4 999999985

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.76  E-value=0.0015  Score=56.22  Aligned_cols=87  Identities=13%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             hccCCCCEEEccCC-CCCCC----CCCccCC-CCccEEEccCCccccCCC----ccCCCCcCCCEEEeecccCcccCchh
Q 009515          445 SLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIP----DSLTSSSKLQLVLLNNNLLEGRVPEE  514 (533)
Q Consensus       445 ~~L~~L~~L~Ls~N-~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~L~L~~N~l~g~lP~~  514 (533)
                      .+.++|+.|+|+++ .++..    +-..+.. +.|+.|+|++|.+...-.    +.+...+.|+.|+|++|.+...--..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999974 45422    2223455 889999999999874322    23445688999999999998433232


Q ss_pred             H----HhcccCCcEEEccCCCC
Q 009515          515 L----YSIGVHGGAFEYVKTPN  532 (533)
Q Consensus       515 l----~~l~~~L~~L~ls~N~l  532 (533)
                      +    .... .|+.|++++|.+
T Consensus        92 l~~aL~~n~-sL~~L~l~~n~~  112 (167)
T d1pgva_          92 LLRSTLVTQ-SIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHTTTTC-CCSEEECCCCSS
T ss_pred             HHHHHHhCC-cCCEEECCCCcC
Confidence            3    3333 499999998854

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.22  E-value=0.0014  Score=56.21  Aligned_cols=106  Identities=14%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             EEEEEEeCC-CCCcc----ccchhhhccCCCCEEEccCCCCCCCCCC----ccCC-CCccEEEccCCccccC----CCcc
Q 009515          425 VISQIDLGS-QGLKG----YISDKISLLSNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPDS  490 (533)
Q Consensus       425 ~L~~L~Ls~-n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~iP~----~l~~-~~L~~L~Ls~N~l~g~----iP~~  490 (533)
                      .|+.|+|++ +.++.    .+-..+...+.|+.|++++|.++...-.    .+.. ++|+.+++++|.+...    +-..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            377788887 45642    2344566778899999999988643222    2333 7899999998887643    2245


Q ss_pred             CCCCcCCCEEEe--ecccCcc----cCchhHHhcccCCcEEEccCCC
Q 009515          491 LTSSSKLQLVLL--NNNLLEG----RVPEELYSIGVHGGAFEYVKTP  531 (533)
Q Consensus       491 ~~~l~~L~~L~L--~~N~l~g----~lP~~l~~l~~~L~~L~ls~N~  531 (533)
                      +...++|+.++|  +.|.+..    .+...+..... |+.|+++.|+
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~-L~~L~l~~~~  143 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT-LLKFGYHFTQ  143 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS-CCEEECCCSS
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCC-cCEEeCcCCC
Confidence            566778887655  4666642    34445556555 8999988764

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=87.06  E-value=0.68  Score=37.84  Aligned_cols=78  Identities=13%  Similarity=0.101  Sum_probs=51.3

Q ss_pred             ceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCe-ecccccccccCCCcceeeeeeeEeecCCceEEEEecc
Q 009515          274 AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVP  352 (533)
Q Consensus       274 ~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~-~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~  352 (533)
                      ...|.+++ |++.|-|.++|+|..         ..++.+.|. .+...     .+.+..   ......+++++|++.|..
T Consensus        64 ~~~f~v~v-PnG~Y~Vtv~~Gd~~---------~~~~~~eg~~~~~~~-----~g~~~~---~~~~V~VtDG~L~l~ft~  125 (146)
T d2o14a1          64 NNTFNVDL-PNGLYEVKVTLGNTA---------RASVAAEGVFQVINM-----TGDGAE---DTFQIPVTDGQLNLLVTE  125 (146)
T ss_dssp             SCCEEEEC-CSEEEEEEEEESSCS---------EEEEEETTEEEEEEE-----ESTTCE---EEEEEEECSSEEEEEEEE
T ss_pred             CceEEEEC-CCCeEEEEEEEecCC---------CccEEEeeEEecccc-----CCccEE---EEEEEEEECCeEEEEEec
Confidence            35788888 579999999999832         236777776 33322     233221   122345788999998865


Q ss_pred             cch--hhhhhccccccccC
Q 009515          353 VVG--AALISGLENYALVP  369 (533)
Q Consensus       353 ~~~--~~iLn~lEi~~l~~  369 (533)
                      ..+  .|.||+|||-++..
T Consensus       126 ~~~G~~~~in~l~I~~~~d  144 (146)
T d2o14a1         126 GKAGTAFTLSALKIKKLSD  144 (146)
T ss_dssp             SSTTSCCEEEEEEEEEEES
T ss_pred             CCCCCccEEEEEEEEeccc
Confidence            542  38899999976543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.71  E-value=0.035  Score=46.98  Aligned_cols=91  Identities=13%  Similarity=0.133  Sum_probs=59.0

Q ss_pred             chhhhccCCCCEEEccC-CCCCCC----CCCccCC-CCccEEEccCCccccCCC----ccCCCCcCCCEEEeecccCccc
Q 009515          441 SDKISLLSNLVNLNLST-NSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIP----DSLTSSSKLQLVLLNNNLLEGR  510 (533)
Q Consensus       441 p~~l~~L~~L~~L~Ls~-N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~L~L~~N~l~g~  510 (533)
                      .....+.++|+.|+|++ +.++..    +-..+.. ++|+.|+|++|++...--    +.+...++|+.+++++|.+...
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            34445678999999997 456422    1123345 889999999999874322    2344568899999999998633


Q ss_pred             C----chhHHhcccCCcEEEc--cCCCC
Q 009515          511 V----PEELYSIGVHGGAFEY--VKTPN  532 (533)
Q Consensus       511 l----P~~l~~l~~~L~~L~l--s~N~l  532 (533)
                      -    -..+..... |+.++|  ++|++
T Consensus        90 g~~~l~~~l~~~~~-L~~l~L~l~~n~i  116 (166)
T d1io0a_          90 GILALVEALQSNTS-LIELRIDNQSQPL  116 (166)
T ss_dssp             HHHHHHHGGGGCSS-CCEEECCCCSSCC
T ss_pred             hHHHHHHHHHhCcc-ccEEeeccCCCcC
Confidence            2    233444443 776555  45554