Citrus Sinensis ID: 009519
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 533 | 2.2.26 [Sep-21-2011] | |||||||
| P37225 | 601 | NAD-dependent malic enzym | N/A | no | 0.981 | 0.870 | 0.841 | 0.0 | |
| Q8L7K9 | 607 | NAD-dependent malic enzym | yes | no | 0.943 | 0.828 | 0.830 | 0.0 | |
| Q9SIU0 | 623 | NAD-dependent malic enzym | no | no | 0.953 | 0.815 | 0.673 | 0.0 | |
| P37221 | 626 | NAD-dependent malic enzym | N/A | no | 0.966 | 0.822 | 0.683 | 0.0 | |
| P37224 | 623 | NAD-dependent malic enzym | N/A | no | 0.954 | 0.817 | 0.648 | 0.0 | |
| Q6TU48 | 544 | NADP-dependent malic enzy | yes | no | 0.874 | 0.856 | 0.464 | 1e-119 | |
| P06801 | 572 | NADP-dependent malic enzy | yes | no | 0.885 | 0.825 | 0.443 | 1e-118 | |
| P13697 | 572 | NADP-dependent malic enzy | yes | no | 0.885 | 0.825 | 0.441 | 1e-118 | |
| Q8BMF3 | 604 | NADP-dependent malic enzy | no | no | 0.932 | 0.822 | 0.429 | 1e-117 | |
| P48163 | 572 | NADP-dependent malic enzy | yes | no | 0.885 | 0.825 | 0.445 | 1e-117 |
| >sp|P37225|MAON_SOLTU NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/531 (84%), Positives = 482/531 (90%), Gaps = 8/531 (1%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW +AR AAS R+RR STAI PC+VHKRG DILHDPWFNKDTGFP+TERDRLGLRGL
Sbjct: 1 MWRVARSAASTFRRTRRLSTAISAPCIVHKRGADILHDPWFNKDTGFPMTERDRLGLRGL 60
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPRVISFEQQY RFMESFRSLEKNTEGQP+ VVSLAKWRILNRLHDRNETLYYRVLIDN
Sbjct: 61 LPPRVISFEQQYDRFMESFRSLEKNTEGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDN 120
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMI+NWP+ QVDMIVLTDG
Sbjct: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDG 180
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQR+LPVMLDVGTNNQKLLED LYLGLRQ
Sbjct: 181 SRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQ 240
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYLSIVDEF+EAVHARWPKA+VQFEDFQ KWAFETL+RYRK+FCMFNDDIQGTA
Sbjct: 241 PRLEGEEYLSIVDEFVEAVHARWPKAVVQFEDFQAKWAFETLDRYRKKFCMFNDDIQGTA 300
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVRAQG LTDFA+QKIVVVGAGSAGLGVLKMA+QA +RM G + A
Sbjct: 301 GVALAGLLGTVRAQGRPLTDFANQKIVVVGAGSAGLGVLKMALQAVSRMTGPS---ADPH 357
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDF--MGLREGASLLEVVRKVKPHVLLGLSGV 418
FFLLDK+GLITK+RK++DPAA PFAK + +GL+EGA L EVV+KVKPHVLLGLSGV
Sbjct: 358 FFLLDKNGLITKDRKDIDPAALPFAKAHHEIEGLGLQEGAGLAEVVKKVKPHVLLGLSGV 417
Query: 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478
GG+F+EEVL+AM+ESDSV+PAIFAMSNPT NAEC DAFK AGE+IVFASGSPF NVDL
Sbjct: 418 GGIFHEEVLRAMKESDSVRPAIFAMSNPTNNAECCPVDAFKLAGEDIVFASGSPFANVDL 477
Query: 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEW---YVCDN 526
GNGKIGHVNQANNMYLFPGIGLG LLSGAR I+D ML+ AAE Y+ D+
Sbjct: 478 GNGKIGHVNQANNMYLFPGIGLGALLSGARNISDTMLEAAAECLASYMSDD 528
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Solanum tuberosum (taxid: 4113) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 9 |
| >sp|Q8L7K9|MAO2_ARATH NAD-dependent malic enzyme 2, mitochondrial OS=Arabidopsis thaliana GN=NAD-ME2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/507 (83%), Positives = 465/507 (91%), Gaps = 4/507 (0%)
Query: 15 SRR-FSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYA 73
SRR FSTAIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLG+RGLLPPRV++ QQ
Sbjct: 21 SRRCFSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGIRGLLPPRVMTCVQQCD 80
Query: 74 RFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTV 133
RF+ESFRSLE NT+G+P VV+LAKWR+LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTV
Sbjct: 81 RFIESFRSLENNTKGEPENVVALAKWRMLNRLHDRNETLYYRVLIDNIKDFAPIIYTPTV 140
Query: 134 GLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193
GLVCQNYSGL+RRPRGMYFSAKDKGEMMSMIYNWPA QVDMIV+TDGSRILGLGDLGVQG
Sbjct: 141 GLVCQNYSGLYRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVITDGSRILGLGDLGVQG 200
Query: 194 IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVD 253
IGIPIGKLD+YVAAAGINPQR+LP+MLDVGTNN+KLL++ LYLG+RQPRLEGEEYL I+D
Sbjct: 201 IGIPIGKLDMYVAAAGINPQRVLPIMLDVGTNNEKLLQNDLYLGVRQPRLEGEEYLEIID 260
Query: 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRA 313
EFMEA RWPKA+VQFEDFQ KWAF TLERYRK+FCMFNDD+QGTAGVALAGLLGTVRA
Sbjct: 261 EFMEAAFTRWPKAVVQFEDFQAKWAFGTLERYRKKFCMFNDDVQGTAGVALAGLLGTVRA 320
Query: 314 QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373
QG ++DF +QKIVVVGAGSAGLGV KMAVQA ARMAG +++ A F+L+DKDGL+T E
Sbjct: 321 QGRPISDFVNQKIVVVGAGSAGLGVTKMAVQAVARMAGISESEATKNFYLIDKDGLVTTE 380
Query: 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRES 433
R LDP A FAK+P + +REGAS++EVV+KV+PHVLLGLSGVGG+FNEEVLKAMRES
Sbjct: 381 RTKLDPGAVLFAKNPAE---IREGASIVEVVKKVRPHVLLGLSGVGGIFNEEVLKAMRES 437
Query: 434 DSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMY 493
DS KPAIFAMSNPT+NAECTAADAFKHAG NIVFASGSPFENV+L NGK+GHVNQANNMY
Sbjct: 438 DSCKPAIFAMSNPTLNAECTAADAFKHAGGNIVFASGSPFENVELENGKVGHVNQANNMY 497
Query: 494 LFPGIGLGTLLSGARFITDGMLQQAAE 520
LFPGIGLGTLLSGAR +TDGMLQ A+E
Sbjct: 498 LFPGIGLGTLLSGARIVTDGMLQAASE 524
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Involved in the regulation of sugars and amino acids metabolisms during the night period. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 9 |
| >sp|Q9SIU0|MAO1_ARATH NAD-dependent malic enzyme 1, mitochondrial OS=Arabidopsis thaliana GN=NAD-ME1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/514 (67%), Positives = 420/514 (81%), Gaps = 6/514 (1%)
Query: 13 SRSRRFSTAIPG-PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQ 71
S R F+T+ P +VHK+G DILHDPWFNK T F +TER+RL LRGLLPP V+ EQQ
Sbjct: 26 SAVRSFTTSEGHRPTIVHKQGLDILHDPWFNKGTAFTMTERNRLDLRGLLPPNVMDSEQQ 85
Query: 72 YARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTP 131
RFM + LE+ P+ +LAKWRILNRLHDRNET+YY+VLI+NI+++API+YTP
Sbjct: 86 IFRFMTDLKRLEEQARDGPSDPNALAKWRILNRLHDRNETMYYKVLINNIEEYAPIVYTP 145
Query: 132 TVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV 191
TVGLVCQNYSGLFRRPRGMYFSA+D+GEMMSM+YNWPA+QVDMIV+TDGSRILGLGDLGV
Sbjct: 146 TVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGV 205
Query: 192 QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSI 251
GIGI +GKLD+YVAAAGINPQR+LPVM+DVGTNN+KL D +YLGL+Q RLE ++Y+ +
Sbjct: 206 HGIGIAVGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLRNDPMYLGLQQRRLEDDDYIDV 265
Query: 252 VDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTV 311
+DEFMEAV+ RWP IVQFEDFQ KWAF+ L+RYR + MFNDD+QGTAGVA+AGLLG V
Sbjct: 266 IDEFMEAVYTRWPHVIVQFEDFQSKWAFKLLQRYRCTYRMFNDDVQGTAGVAIAGLLGAV 325
Query: 312 RAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND-AF--ARNKFFLLDKDG 368
RAQG + DF KIVV GAGSAG+GVL A + ARM GN + AF A+++F+++D G
Sbjct: 326 RAQGRPMIDFPKMKIVVAGAGSAGIGVLNAARKTMARMLGNTETAFDSAQSQFWVVDAQG 385
Query: 369 LITKERKNLDPAAAPFAKDPGDF--MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426
LIT+ R+N+DP A PFA+ + GL+EGA+L+EVVR+VKP VLLGLS VGG+F++EV
Sbjct: 386 LITEGRENIDPEAQPFARKTKEMERQGLKEGATLVEVVREVKPDVLLGLSAVGGLFSKEV 445
Query: 427 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHV 486
L+AM+ S S +PAIFAMSNPT NAECT DAF GEN++FASGSPF+NV+ GNG +GH
Sbjct: 446 LEAMKGSTSTRPAIFAMSNPTKNAECTPQDAFSILGENMIFASGSPFKNVEFGNGHVGHC 505
Query: 487 NQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
NQ NNMYLFPGIGLGTLLSGA ++DGMLQ A+E
Sbjct: 506 NQGNNMYLFPGIGLGTLLSGAPIVSDGMLQAASE 539
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Involved in the regulation of sugars and amino acids metabolisms during the night period. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 9 |
| >sp|P37221|MAOM_SOLTU NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/522 (68%), Positives = 422/522 (80%), Gaps = 7/522 (1%)
Query: 6 RVAASVLSRSRRFSTAIPG--PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPP 63
RVAA+V S S R T G P +VHKR DILHDPWFNK T F TERDRL +RGLLPP
Sbjct: 21 RVAAAVNSSSSRNFTTTEGHRPTIVHKRSLDILHDPWFNKGTAFSFTERDRLHIRGLLPP 80
Query: 64 RVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKD 123
V+SFEQQ ARFM + LE P+ LAKWRILNRLHDRNETLYY+VL++NI++
Sbjct: 81 NVMSFEQQIARFMADLKRLEVQARDGPSDPYVLAKWRILNRLHDRNETLYYKVLMENIEE 140
Query: 124 FAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRI 183
+API+YTPTVGLVCQ YSGLFRRPRGMYFSA+D+GEMMSM+YNWPA QVDMIV+TDGSRI
Sbjct: 141 YAPIVYTPTVGLVCQKYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRI 200
Query: 184 LGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRL 243
LGLGDLG+QGIGI IGKLD+YVAAAGINPQR+LPVM+DVGT+N+ LL+D LYLGL+ RL
Sbjct: 201 LGLGDLGIQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTDNENLLKDPLYLGLQDHRL 260
Query: 244 EGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303
+GEEY+ ++DEFMEAV RWP IVQFEDFQ KWAF+ L+RYR + MFNDDIQGTAGVA
Sbjct: 261 DGEEYIEVIDEFMEAVFTRWPHVIVQFEDFQSKWAFKLLQRYRNNYRMFNDDIQGTAGVA 320
Query: 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND-AF--ARNK 360
+AGLLG VRAQG + DF KIVV GAGSAG+GVL A + ARM GN + AF AR++
Sbjct: 321 IAGLLGAVRAQGRPMIDFPKMKIVVAGAGSAGIGVLNAARKTMARMLGNTEIAFESARSQ 380
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDF--MGLREGASLLEVVRKVKPHVLLGLSGV 418
F+++D GLIT+ R+N+DP A PFA+ + GL EGA+L EVVR+VKP VLLGLS
Sbjct: 381 FWVVDAKGLITEARENVDPDARPFARKIKEIERQGLSEGATLAEVVREVKPDVLLGLSAC 440
Query: 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478
GG+F++EVL+A++ S S +PAIF MSNPT NAECT +AF GENI+FASGSPF++VDL
Sbjct: 441 GGLFSKEVLEALKHSTSTRPAIFPMSNPTRNAECTPEEAFSILGENIIFASGSPFKDVDL 500
Query: 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
GNG +GH NQANNM+LFPGIGLGTLLSG+R ++DGMLQ AAE
Sbjct: 501 GNGHVGHCNQANNMFLFPGIGLGTLLSGSRIVSDGMLQAAAE 542
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Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 9 |
| >sp|P37224|MAOM_AMAHP NAD-dependent malic enzyme 65 kDa isoform, mitochondrial OS=Amaranthus hypochondriacus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/515 (64%), Positives = 413/515 (80%), Gaps = 6/515 (1%)
Query: 12 LSRSRRFSTAIPGP-CMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQ 70
+S R F+T+ +V+KR DIL DPWFNK T F +TERDRL LRGLLPP V++ EQ
Sbjct: 25 VSNHRSFATSEGHRLAIVNKRSLDILQDPWFNKGTAFSMTERDRLDLRGLLPPNVMTTEQ 84
Query: 71 QYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYT 130
Q RF R LE T+ P+ LAKWRILNRLHDRNET++++VLI+NI+++API+ T
Sbjct: 85 QIERFTADLRVLELTTKDGPSDTYDLAKWRILNRLHDRNETMFFKVLIENIEEYAPIVST 144
Query: 131 PTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLG 190
PTVGLVCQ +SGL+RRPRGMYFS+ D+GEMMSM+YNWPA+QVDMIV+TDGSRILGLGDLG
Sbjct: 145 PTVGLVCQKFSGLYRRPRGMYFSSDDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLG 204
Query: 191 VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLS 250
V GIG+ IGKLD+YVAAAGINPQR+LPVM+DVGTNN+ LL++ LYLGL++ RL+GEEYL+
Sbjct: 205 VHGIGVAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEDLLKNPLYLGLQKKRLDGEEYLA 264
Query: 251 IVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGT 310
++DEFMEAV RWP IVQFED Q KWA L+RYR ++ FN D+QGT+GVA+AGLLG
Sbjct: 265 VMDEFMEAVFTRWPNVIVQFEDIQNKWALTLLQRYRHKYRTFNVDVQGTSGVAIAGLLGA 324
Query: 311 VRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND-AF--ARNKFFLLDKD 367
VRAQG + DF QKIVV GAGS+G+GVL A + ARM GN++ AF AR++F+++D
Sbjct: 325 VRAQGRPMIDFPKQKIVVAGAGSSGVGVLNAARKTMARMLGNDESAFDRARSQFWVVDDK 384
Query: 368 GLITKERKNLDPAAAPFA--KDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEE 425
GLIT++R NLDP PFA ++ GL EGA L+EVVR+VKP VLLGLS GG+F++E
Sbjct: 385 GLITEKRANLDPEVQPFAWKENEISLQGLNEGAKLVEVVRQVKPDVLLGLSAYGGLFSKE 444
Query: 426 VLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGH 485
VL+A+++S S +PAIFAMSNPT NAECT +AF G+++V+ASGSPF++VDLGNGKIGH
Sbjct: 445 VLEALKDSTSTRPAIFAMSNPTKNAECTPEEAFSIVGDHVVYASGSPFKDVDLGNGKIGH 504
Query: 486 VNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
VNQ NNMYLFPGIGLG LLSG+R I+D M Q AAE
Sbjct: 505 VNQGNNMYLFPGIGLGVLLSGSRIISDSMFQAAAE 539
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Amaranthus hypochondriacus (taxid: 28502) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 9 |
| >sp|Q6TU48|MAOX_DICDI NADP-dependent malic enzyme OS=Dictyostelium discoideum GN=malA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/487 (46%), Positives = 309/487 (63%), Gaps = 21/487 (4%)
Query: 35 ILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVV 94
IL +P NK TGF ER++LGL+GLLPP+V S ++Q R + F S N E
Sbjct: 8 ILRNPSANKGTGFNNEEREKLGLKGLLPPKVESLQEQSDRALSQFTSFNTNLE------- 60
Query: 95 SLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSA 154
++ LN L DRNETL+Y +L +N++ PIIYTPTVG CQ + FR +GMYF++
Sbjct: 61 ---RYIFLNCLRDRNETLFYYLLSNNLELMMPIIYTPTVGEACQKFGNEFRFAQGMYFAS 117
Query: 155 KDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQR 214
+DKG + +M+ NWPA+ VD+IV++DGSRILGLGDLG G+GIP+GKL +YVA AG P R
Sbjct: 118 QDKGNIRAMMDNWPAEGVDIIVVSDGSRILGLGDLGTNGMGIPVGKLQLYVAGAGFCPTR 177
Query: 215 ILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQ 274
LPV++D GTN +K LED+ YLG R PR+ EY +VDEF+ A +WPK IVQFED
Sbjct: 178 TLPVIIDSGTNTKKYLEDKYYLGERHPRIPDSEYYPLVDEFLAAAFNKWPKVIVQFEDIS 237
Query: 275 MKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA 334
F L+ YR ++ FNDDIQGT V L+G + VR+ + + ++V +GAGSA
Sbjct: 238 NDHCFNLLDEYRNKYLCFNDDIQGTGSVILSGFINAVRSVQKPI---KEHRMVFLGAGSA 294
Query: 335 GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMG 393
G+GV + + AG + AR F+ +D GLIT R + L +A++ +
Sbjct: 295 GIGVAD-CIMSLFDEAGVSKEEARKSFWFVDSKGLITTTRGDELTSQKKQYAREDYTY-- 351
Query: 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECT 453
+ SLLEVVR VKP ++GLSG+GG F++EV++ M + KP +FA+SNPT NAECT
Sbjct: 352 --QLKSLLEVVRDVKPTAIIGLSGIGGSFSQEVIEEMAKHVE-KPIVFALSNPTTNAECT 408
Query: 454 AADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDG 513
A A++ +FASGSPF+ V+ GK Q NNMY+FPG+GL + A+ +TD
Sbjct: 409 AEQAYQWTDGRCIFASGSPFKPVEY-KGKTFVPGQGNNMYIFPGLGLAASVCEAKHVTDA 467
Query: 514 MLQQAAE 520
M+ AA+
Sbjct: 468 MIITAAK 474
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P06801|MAOX_MOUSE NADP-dependent malic enzyme OS=Mus musculus GN=Me1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/494 (44%), Positives = 305/494 (61%), Gaps = 22/494 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTE 87
H+RG + DP NKD F L ER +L + GLLPP +IS E Q R +++F L + +
Sbjct: 11 THQRGYLLTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFD 70
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
++ +L L DRNE L+Y VL+ +++ F PI+YTPTVGL CQ YS FR+P
Sbjct: 71 ----------RYLLLMDLQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKP 120
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
RG++ S DKG + S++ WP V IV+TDG RILGLGDLG G+GIP+GKL +Y A
Sbjct: 121 RGLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTAC 180
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KA 266
G+NPQ+ LP+ LDVGT N++LL+D LY+GLR R+ G EY + +DEFMEA +++
Sbjct: 181 GGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNC 240
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKI 326
++QFEDF + AF L +YR ++C FNDDIQGTA VA+AGLL +R ++ +DQ +
Sbjct: 241 LIQFEDFANRNAFRLLNKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTV 297
Query: 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386
+ GAG A LG+ + V A + G + AR K +L+D GLI K R +L FA
Sbjct: 298 LFQGAGEAALGIAHLVVMAMEK-EGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAH 356
Query: 387 DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446
+ E +L +V+K+KP L+G++ +GG F E++LK M + +P IFA+SNP
Sbjct: 357 EH------EEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAFNE-RPIIFALSNP 409
Query: 447 TMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506
T AEC+A +K +FASGSPF+ V L +G+ Q NN Y+FPG+ LG + G
Sbjct: 410 TSKAECSAEQCYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACG 469
Query: 507 ARFITDGMLQQAAE 520
R I D + AE
Sbjct: 470 LRHIDDKVFLTTAE 483
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P13697|MAOX_RAT NADP-dependent malic enzyme OS=Rattus norvegicus GN=Me1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/494 (44%), Positives = 305/494 (61%), Gaps = 22/494 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTE 87
H+RG + DP NKD F L ER +L + GLLPP +++ E Q R +++F L + +
Sbjct: 11 THQRGYLLTRDPHLNKDLAFTLEERQQLKIHGLLPPCIVNQEIQVLRVIKNFERLNSDFD 70
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
++ +L L DRNE L+Y VL+ N++ F PI+YTPTVGL CQ YS FR+P
Sbjct: 71 ----------RYLLLMDLQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKP 120
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
RG++ S DKG + S++ WP V IV+TDG RILGLGDLG G+GIP+GKL +Y A
Sbjct: 121 RGLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTAC 180
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKA 266
G+NPQ+ LP+ LDVGT N++LL+D LY+GLR R+ G EY + +DEFMEA +++
Sbjct: 181 GGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNC 240
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKI 326
++QFEDF AF L +YR ++C FNDDIQGTA VA+AGLL +R ++ +DQ +
Sbjct: 241 LIQFEDFANLNAFRLLNKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTV 297
Query: 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386
+ GAG A LG+ + V A + G + AR K +L+D GLI K R +L FA
Sbjct: 298 LFQGAGEAALGIAHLIVMAMEK-EGLSKEKARQKIWLVDSKGLIVKGRASLTEEKEVFAH 356
Query: 387 DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446
+ E +L +V+K+KP L+G++ +GG F E++LK M + +P IFA+SNP
Sbjct: 357 EH------EEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAFNE-RPIIFALSNP 409
Query: 447 TMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506
T AEC+A + +K +FASGSPF+ V L +G+ Q NN Y+FPG+ LG + G
Sbjct: 410 TSKAECSAEECYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACG 469
Query: 507 ARFITDGMLQQAAE 520
R I D + AE
Sbjct: 470 LRHINDSVFLTTAE 483
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|Q8BMF3|MAON_MOUSE NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/519 (42%), Positives = 314/519 (60%), Gaps = 22/519 (4%)
Query: 3 NLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLP 62
+L R A S ++ + P P + KRG D+ +P NK F L ER +LG+ GL+P
Sbjct: 21 SLRRQAPSAPAQGCHSKSGPPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIP 80
Query: 63 PRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIK 122
P +S + Q R M + N+ L K+ IL L DRNE L+YRVL +++
Sbjct: 81 PCFLSQDVQLLRIMRYYE----------NQQSDLDKYIILMTLQDRNEKLFYRVLTSDVE 130
Query: 123 DFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSR 182
F PI+YTPTVGL CQ+Y FRRPRG++ + DKG + +M+ +WP + +V+TDG R
Sbjct: 131 KFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNIKAVVVTDGER 190
Query: 183 ILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPR 242
ILGLGDLG G+GIP+GKL +Y A G+NPQ+ LPV+LDVGTNN++LL D LY+GL+ R
Sbjct: 191 ILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQR 250
Query: 243 LEGEEYLSIVDEFMEAVHARWP-KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301
+ GEEY ++DEFM+AV ++ ++QFEDF AF L +YR ++CMFNDDIQGTA
Sbjct: 251 VRGEEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTAS 310
Query: 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361
VA+AG+L +R ++ ++ V GAG A +G+ + V A + G A K
Sbjct: 311 VAVAGILAALR---ITKNRLSNHVFVFQGAGEAAMGIAHLLVMALEK-EGIPKTEAIKKI 366
Query: 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV 421
+++D GLI K R +L+ FA+D E SL EVVR VKP ++G++ + G
Sbjct: 367 WMVDSKGLIVKGRSHLNHEKEMFAQDHP------EVNSLEEVVRLVKPTAIIGVAAIAGA 420
Query: 422 FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNG 481
F E++L+ M S +P +FA+SNPT AECTA ++ +FASGSPF++V L +G
Sbjct: 421 FTEQILRDM-ASFHERPIVFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDG 479
Query: 482 KIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
+ Q NN Y+FPG+ LG + G R I D + AE
Sbjct: 480 RTFTPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAE 518
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P48163|MAOX_HUMAN NADP-dependent malic enzyme OS=Homo sapiens GN=ME1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/494 (44%), Positives = 305/494 (61%), Gaps = 22/494 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTE 87
H+RG + +P NKD F L ER +L + GLLPP S E Q R +++F L + +
Sbjct: 11 THQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFD 70
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
++ +L L DRNE L+YRVL +I+ F PI+YTPTVGL CQ YS +FR+P
Sbjct: 71 ----------RYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKP 120
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
RG++ + D+G + S++ WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A
Sbjct: 121 RGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTAC 180
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KA 266
G+NPQ LPV+LDVGT N++LL+D LY+GLRQ R+ G EY +DEFMEAV +++
Sbjct: 181 GGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNC 240
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKI 326
++QFEDF AF L +YR ++C FNDDIQGTA VA+AGLL +R ++ +DQ I
Sbjct: 241 LIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTI 297
Query: 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386
+ GAG A LG+ + V A + G A K +L+D GLI K R +L FA
Sbjct: 298 LFQGAGEAALGIAHLIVMALEK-EGLPKEKAIKKIWLVDSKGLIVKGRASLTQEKEKFAH 356
Query: 387 DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446
+ E +L +V+++KP L+G++ +GG F+E++LK M + +P IFA+SNP
Sbjct: 357 EH------EEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNE-RPIIFALSNP 409
Query: 447 TMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506
T AEC+A +K +FASGSPF+ V L NG+ + Q NN Y+FPG+ LG + G
Sbjct: 410 TSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACG 469
Query: 507 ARFITDGMLQQAAE 520
R ITD + AE
Sbjct: 470 LRQITDNIFLTTAE 483
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 533 | ||||||
| 255541510 | 602 | malic enzyme, putative [Ricinus communis | 0.994 | 0.880 | 0.883 | 0.0 | |
| 224063997 | 607 | predicted protein [Populus trichocarpa] | 0.996 | 0.874 | 0.876 | 0.0 | |
| 356504809 | 604 | PREDICTED: NAD-dependent malic enzyme 59 | 0.996 | 0.879 | 0.862 | 0.0 | |
| 356520442 | 604 | PREDICTED: NAD-dependent malic enzyme 59 | 0.996 | 0.879 | 0.864 | 0.0 | |
| 224127578 | 607 | predicted protein [Populus trichocarpa] | 0.996 | 0.874 | 0.869 | 0.0 | |
| 357514633 | 604 | Malic enzyme [Medicago truncatula] gi|35 | 0.975 | 0.860 | 0.869 | 0.0 | |
| 225454087 | 605 | PREDICTED: NAD-dependent malic enzyme 59 | 0.939 | 0.828 | 0.898 | 0.0 | |
| 357507189 | 527 | Malic enzyme [Medicago truncatula] gi|35 | 0.975 | 0.986 | 0.856 | 0.0 | |
| 357507187 | 601 | Malic enzyme [Medicago truncatula] gi|35 | 0.971 | 0.861 | 0.855 | 0.0 | |
| 356568348 | 600 | PREDICTED: NAD-dependent malic enzyme 59 | 0.969 | 0.861 | 0.861 | 0.0 |
| >gi|255541510|ref|XP_002511819.1| malic enzyme, putative [Ricinus communis] gi|223548999|gb|EEF50488.1| malic enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/531 (88%), Positives = 493/531 (92%), Gaps = 1/531 (0%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW LAR A S RSRRFSTAIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLGLRGL
Sbjct: 1 MWKLARFATS-RCRSRRFSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGL 59
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPRVISFE QY RFMES+RSLEKNT+GQP+ VVSLAKWRILNRLHDRNETLYYRVLIDN
Sbjct: 60 LPPRVISFEHQYDRFMESYRSLEKNTQGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDN 119
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPA+QVDMIVLTDG
Sbjct: 120 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAEQVDMIVLTDG 179
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ
Sbjct: 180 SRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 239
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYLSIVDEFMEAV RWPKAIVQFEDFQMKWAFETL+RYRKRFCMFNDDIQGTA
Sbjct: 240 PRLEGEEYLSIVDEFMEAVFTRWPKAIVQFEDFQMKWAFETLQRYRKRFCMFNDDIQGTA 299
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVRAQG L+DF QKIVVVGAGSAGLGVL MA+QA +RM+GNN+A N
Sbjct: 300 GVALAGLLGTVRAQGRPLSDFVKQKIVVVGAGSAGLGVLNMAIQAVSRMSGNNEASVNNN 359
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420
FFLLDKDGLITKERKN+DPAAAPFAKD D GLREGA+L+EVV+K+KPHVLLGLSGVGG
Sbjct: 360 FFLLDKDGLITKERKNIDPAAAPFAKDLKDVEGLREGATLVEVVKKLKPHVLLGLSGVGG 419
Query: 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGN 480
+FN+EVLKAMR+SD +KPAIFAMSNPTMNAECTA DAFKHAGENIVFASGSPFENVDLGN
Sbjct: 420 IFNDEVLKAMRDSDCIKPAIFAMSNPTMNAECTATDAFKHAGENIVFASGSPFENVDLGN 479
Query: 481 GKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531
GK+GHVNQANNMYLFPGIGLG L+SGARFITDGMLQ AAE +E I
Sbjct: 480 GKVGHVNQANNMYLFPGIGLGALVSGARFITDGMLQAAAECLASYMTDEEI 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063997|ref|XP_002301340.1| predicted protein [Populus trichocarpa] gi|222843066|gb|EEE80613.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/535 (87%), Positives = 494/535 (92%), Gaps = 4/535 (0%)
Query: 1 MWNLARVAASVLSRS--RRF--STAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLG 56
MW LAR A+S LSRS RRF + AIP PC++HKRGTDILHDPWFNKDTGFPLTERDRLG
Sbjct: 1 MWRLARCASSNLSRSLRRRFFSTAAIPAPCIIHKRGTDILHDPWFNKDTGFPLTERDRLG 60
Query: 57 LRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRV 116
LRGLLPPRVISFEQQY RFMES+RSLEKNT+GQP VVSLAKWRILNRLHDRNETLYYRV
Sbjct: 61 LRGLLPPRVISFEQQYDRFMESYRSLEKNTQGQPYSVVSLAKWRILNRLHDRNETLYYRV 120
Query: 117 LIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIV 176
LIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIV
Sbjct: 121 LIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIV 180
Query: 177 LTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYL 236
LTDGSRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQ+ILPVMLDVGTNNQKLLED LYL
Sbjct: 181 LTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYL 240
Query: 237 GLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDI 296
GLRQPRLEGEEYLSIVDEFMEAVH RWPKAIVQFEDFQMKWAFETL+RYRKRFCMFNDDI
Sbjct: 241 GLRQPRLEGEEYLSIVDEFMEAVHTRWPKAIVQFEDFQMKWAFETLQRYRKRFCMFNDDI 300
Query: 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAF 356
QGTAGVALAGLLGTVRAQGL L+DF +QKIVVVGAGSAGLGVL MA+QA +RM+GNN+
Sbjct: 301 QGTAGVALAGLLGTVRAQGLPLSDFVNQKIVVVGAGSAGLGVLNMAIQALSRMSGNNEMA 360
Query: 357 ARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416
A+NK +LLDKDGLITKERKN+DPAAAPFAKD D GLREGAS EVV+K+KPHVLLGLS
Sbjct: 361 AKNKCYLLDKDGLITKERKNIDPAAAPFAKDLKDVEGLREGASPFEVVKKLKPHVLLGLS 420
Query: 417 GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENV 476
GVGGVFNEEVLKAMRESDS KPAIFAMSNPTMNAECTAADAFK+AG NI+F SGSPFE+V
Sbjct: 421 GVGGVFNEEVLKAMRESDSTKPAIFAMSNPTMNAECTAADAFKYAGPNIIFGSGSPFEDV 480
Query: 477 DLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531
DLGNGK+GHVNQANNMYLFPGIGLGTLLSGA ITDGMLQ AAE +E I
Sbjct: 481 DLGNGKVGHVNQANNMYLFPGIGLGTLLSGAHIITDGMLQAAAECLASYMTDEEI 535
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504809|ref|XP_003521187.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/532 (86%), Positives = 492/532 (92%), Gaps = 1/532 (0%)
Query: 1 MWNLAR-VAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRG 59
MW L R AAS L+RSRRFS AIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLGLRG
Sbjct: 1 MWKLVRYAAASNLARSRRFSAAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRG 60
Query: 60 LLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLID 119
LLPPRVISFEQQY RFM SFRSLE NT+GQP+KVVSLAKWRILNRLHDRNETLYYRVLID
Sbjct: 61 LLPPRVISFEQQYDRFMNSFRSLENNTQGQPDKVVSLAKWRILNRLHDRNETLYYRVLID 120
Query: 120 NIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTD 179
NIK+FAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPA +VDMIVLTD
Sbjct: 121 NIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTD 180
Query: 180 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR 239
GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR
Sbjct: 181 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR 240
Query: 240 QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGT 299
QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETL+RY+KRFCMFNDDIQGT
Sbjct: 241 QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYQKRFCMFNDDIQGT 300
Query: 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359
AGVALAG+LGTVRAQG LTDF +QKIVVVGAGSAGLGVLKMA+Q A+++G ++ A++
Sbjct: 301 AGVALAGILGTVRAQGRPLTDFVNQKIVVVGAGSAGLGVLKMAIQTVAKISGCSELAAKS 360
Query: 360 KFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 419
+F+L+DKDGL+T ER +LDPAAAPFAK+P D GL EGAS++EVV+K++PHVLLGLSGVG
Sbjct: 361 QFYLIDKDGLVTTERNSLDPAAAPFAKNPRDIEGLTEGASIIEVVKKIRPHVLLGLSGVG 420
Query: 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLG 479
G+FNEEVLKAMRES S KPAIFAMSNPTMNAECT+ DAFKHAGENIVFASGSPFENVDLG
Sbjct: 421 GIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTSIDAFKHAGENIVFASGSPFENVDLG 480
Query: 480 NGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531
NGK+GHVNQANNMYLFPGIGLGTLLSGA ITDGMLQ A+E E I
Sbjct: 481 NGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAASECLASYMAEEDI 532
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520442|ref|XP_003528871.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/532 (86%), Positives = 492/532 (92%), Gaps = 1/532 (0%)
Query: 1 MWNLAR-VAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRG 59
MW L R AAS L+RSRRFS AIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLGLRG
Sbjct: 1 MWKLVRYAAASNLARSRRFSAAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRG 60
Query: 60 LLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLID 119
LLPPRVISFEQQY RFM SFRSLE NT+GQP+KVVSLAKWRILNRLHDRNETLYYRVLID
Sbjct: 61 LLPPRVISFEQQYDRFMNSFRSLENNTQGQPDKVVSLAKWRILNRLHDRNETLYYRVLID 120
Query: 120 NIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTD 179
NIK+FAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPA +VDMIVLTD
Sbjct: 121 NIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTD 180
Query: 180 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR 239
GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR
Sbjct: 181 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR 240
Query: 240 QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGT 299
QPRLEGEEYLSI+DEFMEAVHARWPKAIVQFEDFQMKWAFETL+RY+K+FCMFNDDIQGT
Sbjct: 241 QPRLEGEEYLSIIDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYQKKFCMFNDDIQGT 300
Query: 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359
AGVALAGLLGTVRAQG LTDF +QKIVVVGAGSAGLGVLKMA+QA A+++G ++ A++
Sbjct: 301 AGVALAGLLGTVRAQGRPLTDFVNQKIVVVGAGSAGLGVLKMAIQAVAKISGCSELAAKS 360
Query: 360 KFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 419
+F+L+DKDGL+T ER NLDPAAAPFAK+P D GL EGAS++EVV+K++PHVLLGLSGVG
Sbjct: 361 QFYLIDKDGLVTTERNNLDPAAAPFAKNPRDIEGLTEGASIIEVVKKIRPHVLLGLSGVG 420
Query: 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLG 479
G+FNEEVLKAMRES S KPAIFAMSNPTMNAECTA DAFKHAGEN+VFASGSPFENVDLG
Sbjct: 421 GIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFKHAGENMVFASGSPFENVDLG 480
Query: 480 NGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531
NG +GHVNQANNMYLFPGIGLGTLLSGA ITDGMLQ AAE E I
Sbjct: 481 NGIVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAAAECLASYMAEEDI 532
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127578|ref|XP_002320109.1| predicted protein [Populus trichocarpa] gi|222860882|gb|EEE98424.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/535 (86%), Positives = 491/535 (91%), Gaps = 4/535 (0%)
Query: 1 MWNLARVAASVL--SRSRRF--STAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLG 56
MW +AR AAS + S RRF + AIPG C+VHKRG DILHDPWFNKDTGFPLTERDRLG
Sbjct: 1 MWRVARFAASNVRSSSQRRFFSAAAIPGACIVHKRGADILHDPWFNKDTGFPLTERDRLG 60
Query: 57 LRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRV 116
LRGLLPPRVISFEQQY RFMES+RSLEKNT+GQP VVSLAKWRILNRLHDRNETLYYRV
Sbjct: 61 LRGLLPPRVISFEQQYDRFMESYRSLEKNTQGQPYSVVSLAKWRILNRLHDRNETLYYRV 120
Query: 117 LIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIV 176
LIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWP QQVDMIV
Sbjct: 121 LIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPGQQVDMIV 180
Query: 177 LTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYL 236
LTDGSRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQRILP+MLDVGTNNQKLLED LYL
Sbjct: 181 LTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPIMLDVGTNNQKLLEDPLYL 240
Query: 237 GLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDI 296
GLRQPRLEGEEYLSIVDEFMEAVH RWPKAIVQFEDFQMKWAFETL+RYRKRFCMFNDD+
Sbjct: 241 GLRQPRLEGEEYLSIVDEFMEAVHTRWPKAIVQFEDFQMKWAFETLQRYRKRFCMFNDDV 300
Query: 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAF 356
QGTAGVALAGLLGTVRAQG L+DF +QKIVVVGAGSAGLGVL MA+QA +RM+GNN+
Sbjct: 301 QGTAGVALAGLLGTVRAQGRPLSDFVNQKIVVVGAGSAGLGVLTMAIQALSRMSGNNEMA 360
Query: 357 ARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416
A+N+ +LLDKDGLITKERKNLDPAAAPFAKD D GLREGASLLEVV+K+KPHVLLGLS
Sbjct: 361 AKNQCYLLDKDGLITKERKNLDPAAAPFAKDIKDVEGLREGASLLEVVKKLKPHVLLGLS 420
Query: 417 GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENV 476
GVGG+FNE+VLKAMRESDS KPAIF+MSNPTMNAEC AADAFKHAG NIVFASGSPFENV
Sbjct: 421 GVGGIFNEQVLKAMRESDSPKPAIFSMSNPTMNAECNAADAFKHAGPNIVFASGSPFENV 480
Query: 477 DLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531
DLGNGK+GHVNQANNMYLFPGIGLGTLLSGA ITDGMLQ AAE +E I
Sbjct: 481 DLGNGKVGHVNQANNMYLFPGIGLGTLLSGAHVITDGMLQAAAECLASYMTDEEI 535
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514633|ref|XP_003627605.1| Malic enzyme [Medicago truncatula] gi|355521627|gb|AET02081.1| Malic enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/521 (86%), Positives = 488/521 (93%), Gaps = 1/521 (0%)
Query: 1 MWNLAR-VAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRG 59
MW AR V+A+ L RSRRFSTAIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLGLRG
Sbjct: 1 MWKFARFVSATKLVRSRRFSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRG 60
Query: 60 LLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLID 119
LLPPRVISFEQQY RF++S+RSLEKNT GQP VVSLAKWRILNRLHDRNETLYYRVLID
Sbjct: 61 LLPPRVISFEQQYDRFLDSYRSLEKNTLGQPENVVSLAKWRILNRLHDRNETLYYRVLID 120
Query: 120 NIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTD 179
NIK+FAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQ+VDMIVLTD
Sbjct: 121 NIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQEVDMIVLTD 180
Query: 180 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLR 239
GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLL DRLYLGLR
Sbjct: 181 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLGDRLYLGLR 240
Query: 240 QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGT 299
QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQ KWAFETLERY+KRFCMFNDDIQGT
Sbjct: 241 QPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQAKWAFETLERYKKRFCMFNDDIQGT 300
Query: 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359
AGVALAGLLGTVR+QG L+DF +QKIV+VGAGSAGLGVLKMA+QA A+++G +++ A++
Sbjct: 301 AGVALAGLLGTVRSQGRPLSDFVNQKIVMVGAGSAGLGVLKMAIQAVAKISGCSESAAKS 360
Query: 360 KFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 419
+FFL+DK+GL+T ER NLDP AAPFAK+P D GL EGAS++EVV+KVKPHVLLGLSGVG
Sbjct: 361 QFFLIDKNGLVTTERNNLDPDAAPFAKNPRDIDGLTEGASIVEVVKKVKPHVLLGLSGVG 420
Query: 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLG 479
G+FNEEVLKAMRES S KPAIFAMSNPT+NAECTA DAF HAGE+IVFASGSPFENVD G
Sbjct: 421 GIFNEEVLKAMRESVSTKPAIFAMSNPTLNAECTAIDAFNHAGEHIVFASGSPFENVDFG 480
Query: 480 NGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
NG +GHVNQANNMYLFPGIGLGTLLSG+R ITDGMLQ AAE
Sbjct: 481 NGNVGHVNQANNMYLFPGIGLGTLLSGSRLITDGMLQAAAE 521
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454087|ref|XP_002266697.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [Vitis vinifera] gi|297745211|emb|CBI40291.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/501 (89%), Positives = 475/501 (94%)
Query: 20 TAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESF 79
TAIPGPC+VHKRG DILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFE QYARFMES+
Sbjct: 22 TAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYARFMESY 81
Query: 80 RSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQN 139
RSLEKNT GQP+ VVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQN
Sbjct: 82 RSLEKNTLGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQN 141
Query: 140 YSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIG 199
YSGLFRRPRGMYFS KDKGEMMSMIYNWPA QVDMIV+TDGSRILGLGDLGVQGIGIPIG
Sbjct: 142 YSGLFRRPRGMYFSGKDKGEMMSMIYNWPAHQVDMIVITDGSRILGLGDLGVQGIGIPIG 201
Query: 200 KLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAV 259
KLD+YVAAAGINPQRILP+MLDVGTNNQ+LLEDRLYLGLRQPRLEGEEYLS+VDE MEA+
Sbjct: 202 KLDMYVAAAGINPQRILPIMLDVGTNNQRLLEDRLYLGLRQPRLEGEEYLSVVDELMEAI 261
Query: 260 HARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLT 319
RWPKAIVQFEDFQMKWAFETL+RYRK+FCMFNDDIQGTAGVALAGLLGTVRAQG LT
Sbjct: 262 FTRWPKAIVQFEDFQMKWAFETLQRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGRPLT 321
Query: 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379
DF +QKIVVVGAGSAG+GVL MA QAA+R+AGN A ++F+LLDKDGLITKERKN+DP
Sbjct: 322 DFVNQKIVVVGAGSAGIGVLNMAAQAASRIAGNTGASPNHQFYLLDKDGLITKERKNIDP 381
Query: 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPA 439
AAAPFAK PG+ GLREGASLLEVV+KVKPHVLLGLSGVGGVFNEEVLKAMRESDS KPA
Sbjct: 382 AAAPFAKGPGEIEGLREGASLLEVVKKVKPHVLLGLSGVGGVFNEEVLKAMRESDSTKPA 441
Query: 440 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499
IFAMSNPTMNAECTAADAFKHAGENIVFASGSPF NV+LGNGK+GHVNQANNMYLFPGIG
Sbjct: 442 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFANVNLGNGKVGHVNQANNMYLFPGIG 501
Query: 500 LGTLLSGARFITDGMLQQAAE 520
LGTLL+GA FI+DGMLQ AAE
Sbjct: 502 LGTLLAGAHFISDGMLQAAAE 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507189|ref|XP_003623883.1| Malic enzyme [Medicago truncatula] gi|355498898|gb|AES80101.1| Malic enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/522 (85%), Positives = 483/522 (92%), Gaps = 2/522 (0%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW + R AAS SRSR FSTAIP PCMVHKRG DILHDPWFNKDTGFPLTERDRLGLRGL
Sbjct: 1 MWKVTRFAAS--SRSRLFSTAIPAPCMVHKRGADILHDPWFNKDTGFPLTERDRLGLRGL 58
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPR+ISF++QY RFM S+RSLEKNT GQ +K+VSL+KWRILNRLHDRNETLYYR LIDN
Sbjct: 59 LPPRIISFQEQYDRFMSSYRSLEKNTHGQSDKIVSLSKWRILNRLHDRNETLYYRALIDN 118
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IK+FAPIIYTPTVGLVCQNY GL+RRPRGMYFSAKDKGEMMSMIYNWPA QVDMIVLTDG
Sbjct: 119 IKEFAPIIYTPTVGLVCQNYCGLYRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVLTDG 178
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIP+GKLD+YVAAAGINPQRILP+MLDVGTNNQKLL+DRLYLGLRQ
Sbjct: 179 SRILGLGDLGVQGIGIPVGKLDMYVAAAGINPQRILPIMLDVGTNNQKLLDDRLYLGLRQ 238
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETL+RYR +FCMFNDDIQGTA
Sbjct: 239 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRHKFCMFNDDIQGTA 298
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVRAQG L+DFA QKIV+VGAGSAGLGVL MAVQA +RM+G ++ A+++
Sbjct: 299 GVALAGLLGTVRAQGRPLSDFAKQKIVIVGAGSAGLGVLNMAVQAVSRMSGCSETAAKSQ 358
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420
FFL+DK+GL+T ER NLDPAA PFAK+P D GL EGAS++EVV+KVKPHVLLGLSGVGG
Sbjct: 359 FFLIDKNGLVTTERSNLDPAAVPFAKNPRDLEGLAEGASIIEVVKKVKPHVLLGLSGVGG 418
Query: 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGN 480
VFNE+VLKAMRES S KPAIFAMSNPTMNAECTA DAF HAGENIVFASGSPFENVDLGN
Sbjct: 419 VFNEQVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFNHAGENIVFASGSPFENVDLGN 478
Query: 481 GKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWY 522
G+ GHVNQANNMYLFPGIGLG+LLSGA ITDGMLQ A+EWY
Sbjct: 479 GRAGHVNQANNMYLFPGIGLGSLLSGAHHITDGMLQAASEWY 520
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507187|ref|XP_003623882.1| Malic enzyme [Medicago truncatula] gi|355498897|gb|AES80100.1| Malic enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/520 (85%), Positives = 481/520 (92%), Gaps = 2/520 (0%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW + R AAS SRSR FSTAIP PCMVHKRG DILHDPWFNKDTGFPLTERDRLGLRGL
Sbjct: 1 MWKVTRFAAS--SRSRLFSTAIPAPCMVHKRGADILHDPWFNKDTGFPLTERDRLGLRGL 58
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPR+ISF++QY RFM S+RSLEKNT GQ +K+VSL+KWRILNRLHDRNETLYYR LIDN
Sbjct: 59 LPPRIISFQEQYDRFMSSYRSLEKNTHGQSDKIVSLSKWRILNRLHDRNETLYYRALIDN 118
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IK+FAPIIYTPTVGLVCQNY GL+RRPRGMYFSAKDKGEMMSMIYNWPA QVDMIVLTDG
Sbjct: 119 IKEFAPIIYTPTVGLVCQNYCGLYRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVLTDG 178
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIP+GKLD+YVAAAGINPQRILP+MLDVGTNNQKLL+DRLYLGLRQ
Sbjct: 179 SRILGLGDLGVQGIGIPVGKLDMYVAAAGINPQRILPIMLDVGTNNQKLLDDRLYLGLRQ 238
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETL+RYR +FCMFNDDIQGTA
Sbjct: 239 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRHKFCMFNDDIQGTA 298
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVRAQG L+DFA QKIV+VGAGSAGLGVL MAVQA +RM+G ++ A+++
Sbjct: 299 GVALAGLLGTVRAQGRPLSDFAKQKIVIVGAGSAGLGVLNMAVQAVSRMSGCSETAAKSQ 358
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420
FFL+DK+GL+T ER NLDPAA PFAK+P D GL EGAS++EVV+KVKPHVLLGLSGVGG
Sbjct: 359 FFLIDKNGLVTTERSNLDPAAVPFAKNPRDLEGLAEGASIIEVVKKVKPHVLLGLSGVGG 418
Query: 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGN 480
VFNE+VLKAMRES S KPAIFAMSNPTMNAECTA DAF HAGENIVFASGSPFENVDLGN
Sbjct: 419 VFNEQVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFNHAGENIVFASGSPFENVDLGN 478
Query: 481 GKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
G+ GHVNQANNMYLFPGIGLG+LLSGA ITDGMLQ A+E
Sbjct: 479 GRAGHVNQANNMYLFPGIGLGSLLSGAHHITDGMLQAASE 518
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568348|ref|XP_003552373.1| PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/520 (86%), Positives = 480/520 (92%), Gaps = 3/520 (0%)
Query: 1 MWNLARVAASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 60
MW + R AA+ RSRRFSTAIPGPC VHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL
Sbjct: 1 MWKVVRFAAA---RSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGL 57
Query: 61 LPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDN 120
LPPRVISFE QY RFM S+RSLEKNT+GQ ++ VSL+KWRILNRLHDRNETLYYRVLIDN
Sbjct: 58 LPPRVISFEHQYDRFMNSYRSLEKNTQGQSDRFVSLSKWRILNRLHDRNETLYYRVLIDN 117
Query: 121 IKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180
IK+FAPIIYTPTVGLVC+NYSGLFRRPRGMYFSAKDKGEMMSMIYNWP+ QVDMIVLTDG
Sbjct: 118 IKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDKGEMMSMIYNWPSDQVDMIVLTDG 177
Query: 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQ 240
SRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQ+ILPVMLDVGTNNQKLLED LYLG+RQ
Sbjct: 178 SRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYLGVRQ 237
Query: 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300
PRLEGEEYL IVDEFMEAVHARWPKAIVQFEDFQMKWAFETL+RYR+RFCMFNDDIQGTA
Sbjct: 238 PRLEGEEYLLIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRERFCMFNDDIQGTA 297
Query: 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360
GVALAGLLGTVR+QG L+DF QKIVVVGAGSAGLGVL MAVQA +RM+G + A ++
Sbjct: 298 GVALAGLLGTVRSQGQPLSDFLKQKIVVVGAGSAGLGVLSMAVQAVSRMSGGSGTDANSQ 357
Query: 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420
FFL+DKDGL+T ER NLDPAA PFAK+P D GL EGAS++EVV+KVKPHVLLGLSGVGG
Sbjct: 358 FFLIDKDGLVTTERSNLDPAAVPFAKNPRDLEGLSEGASIIEVVKKVKPHVLLGLSGVGG 417
Query: 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGN 480
VFN EVLKAMRES S KPAIFAMSNPTMNAECTA +AF HAGENIVFASGSPFENVDLGN
Sbjct: 418 VFNTEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENIVFASGSPFENVDLGN 477
Query: 481 GKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
G++GHVNQANNMYLFPGIGLGTLLSGAR ITDGML+ AAE
Sbjct: 478 GEVGHVNQANNMYLFPGIGLGTLLSGARHITDGMLRAAAE 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 533 | ||||||
| TAIR|locus:2127038 | 607 | NAD-ME2 "AT4G00570" [Arabidops | 0.938 | 0.823 | 0.735 | 1.2e-200 | |
| TAIR|locus:2054085 | 623 | NAD-ME1 "AT2G13560" [Arabidops | 0.930 | 0.796 | 0.598 | 5.1e-161 | |
| FB|FBgn0029155 | 624 | Men-b "Malic enzyme b" [Drosop | 0.887 | 0.758 | 0.395 | 2.2e-89 | |
| WB|WBGene00012983 | 620 | men-1 [Caenorhabditis elegans | 0.878 | 0.754 | 0.402 | 7.5e-89 | |
| ZFIN|ZDB-GENE-041111-294 | 603 | me3 "malic enzyme 3, NADP(+)-d | 0.893 | 0.789 | 0.389 | 7.5e-89 | |
| MGI|MGI:97043 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.883 | 0.823 | 0.389 | 2.5e-88 | |
| RGD|3074 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.883 | 0.823 | 0.387 | 3.2e-88 | |
| UNIPROTKB|P13697 | 572 | Me1 "NADP-dependent malic enzy | 0.883 | 0.823 | 0.387 | 3.2e-88 | |
| MGI|MGI:1916679 | 604 | Me3 "malic enzyme 3, NADP(+)-d | 0.894 | 0.789 | 0.392 | 5.3e-88 | |
| UNIPROTKB|E9PMB9 | 581 | ME3 "Malic enzyme" [Homo sapie | 0.894 | 0.820 | 0.396 | 1.4e-87 |
| TAIR|locus:2127038 NAD-ME2 "AT4G00570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
Identities = 370/503 (73%), Positives = 412/503 (81%)
Query: 18 FSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFME 77
FSTAIPGPC+VHKRG DILHDPWFNKDTGFPLTE V++ QQ RF+E
Sbjct: 25 FSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGIRGLLPPRVMTCVQQCDRFIE 84
Query: 78 SFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVC 137
SFRSLE NT+G+P VV+LAKWR+LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVC
Sbjct: 85 SFRSLENNTKGEPENVVALAKWRMLNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVC 144
Query: 138 QNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIP 197
QNYSGL+RRPRGMYFSAKDKGEMMSMIYNWPA QVDMIV+TDGSRILGLGDLGVQGIGIP
Sbjct: 145 QNYSGLYRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVITDGSRILGLGDLGVQGIGIP 204
Query: 198 IGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFME 257
IGKLD+YVAAAGINPQR+LP+MLDVGTNN+KLL++ LYLG+RQPRLEGEEYL I+DEFME
Sbjct: 205 IGKLDMYVAAAGINPQRVLPIMLDVGTNNEKLLQNDLYLGVRQPRLEGEEYLEIIDEFME 264
Query: 258 AVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLS 317
A RWPKA+VQFEDFQ KWAF TLERYRK+FCMFNDD+Q RAQG
Sbjct: 265 AAFTRWPKAVVQFEDFQAKWAFGTLERYRKKFCMFNDDVQGTAGVALAGLLGTVRAQGRP 324
Query: 318 LTDFADQKIXXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377
++DF +QKI KMAVQA ARMAG +++ A F+L+DKDGL+T ER L
Sbjct: 325 ISDFVNQKIVVVGAGSAGLGVTKMAVQAVARMAGISESEATKNFYLIDKDGLVTTERTKL 384
Query: 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVK 437
DP A FAK+P + +REGAS++EVV+KV+PH FNEEVLKAMRESDS K
Sbjct: 385 DPGAVLFAKNPAE---IREGASIVEVVKKVRPHVLLGLSGVGGIFNEEVLKAMRESDSCK 441
Query: 438 PAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPG 497
PAIFAMSNPT+NAECTAADAFKHAG NIVFASGSPFENV+L NGK+GHVNQANNMYLFPG
Sbjct: 442 PAIFAMSNPTLNAECTAADAFKHAGGNIVFASGSPFENVELENGKVGHVNQANNMYLFPG 501
Query: 498 IGLGTLLSGARFITDGMLQQAAE 520
IGLGTLLSGAR +TDGMLQ A+E
Sbjct: 502 IGLGTLLSGARIVTDGMLQAASE 524
|
|
| TAIR|locus:2054085 NAD-ME1 "AT2G13560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
Identities = 300/501 (59%), Positives = 368/501 (73%)
Query: 25 PCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEK 84
P +VHK+G DILHDPWFNK T F +TE V+ EQQ RFM + LE+
Sbjct: 39 PTIVHKQGLDILHDPWFNKGTAFTMTERNRLDLRGLLPPNVMDSEQQIFRFMTDLKRLEE 98
Query: 85 NTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144
P+ +LAKWRILNRLHDRNET+YY+VLI+NI+++API+YTPTVGLVCQNYSGLF
Sbjct: 99 QARDGPSDPNALAKWRILNRLHDRNETMYYKVLINNIEEYAPIVYTPTVGLVCQNYSGLF 158
Query: 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVY 204
RRPRGMYFSA+D+GEMMSM+YNWPA+QVDMIV+TDGSRILGLGDLGV GIGI +GKLD+Y
Sbjct: 159 RRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHGIGIAVGKLDLY 218
Query: 205 VAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264
VAAAGINPQR+LPVM+DVGTNN+KL D +YLGL+Q RLE ++Y+ ++DEFMEAV+ RWP
Sbjct: 219 VAAAGINPQRVLPVMIDVGTNNEKLRNDPMYLGLQQRRLEDDDYIDVIDEFMEAVYTRWP 278
Query: 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQ 324
IVQFEDFQ KWAF+ L+RYR + MFNDD+Q RAQG + DF
Sbjct: 279 HVIVQFEDFQSKWAFKLLQRYRCTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKM 338
Query: 325 KIXXXXXXXXXXXXXKMAVQAAARMAGNND-AF--ARNKFFLLDKDGLITKERKNLDPAA 381
KI A + ARM GN + AF A+++F+++D GLIT+ R+N+DP A
Sbjct: 339 KIVVAGAGSAGIGVLNAARKTMARMLGNTETAFDSAQSQFWVVDAQGLITEGRENIDPEA 398
Query: 382 APFAKDPGDF--MGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPA 439
PFA+ + GL+EGA+L+EVVR+VKP F++EVL+AM+ S S +PA
Sbjct: 399 QPFARKTKEMERQGLKEGATLVEVVREVKPDVLLGLSAVGGLFSKEVLEAMKGSTSTRPA 458
Query: 440 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499
IFAMSNPT NAECT DAF GEN++FASGSPF+NV+ GNG +GH NQ NNMYLFPGIG
Sbjct: 459 IFAMSNPTKNAECTPQDAFSILGENMIFASGSPFKNVEFGNGHVGHCNQGNNMYLFPGIG 518
Query: 500 LGTLLSGARFITDGMLQQAAE 520
LGTLLSGA ++DGMLQ A+E
Sbjct: 519 LGTLLSGAPIVSDGMLQAASE 539
|
|
| FB|FBgn0029155 Men-b "Malic enzyme b" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 197/498 (39%), Positives = 271/498 (54%)
Query: 26 CMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKN 85
C RG D + DP NK F L E + E+Q + N
Sbjct: 47 CPSQVRGIDHIRDPRLNKGLAFTLEERQTLGIHGLQPARFKTQEEQL-----QLCKIAVN 101
Query: 86 TEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFR 145
+P L K+ L+ L+DRNE L++R L +NI+D PI+YTPTVGL CQ + ++R
Sbjct: 102 RYTEP-----LNKYLYLSDLYDRNERLFFRFLSENIEDLMPIVYTPTVGLACQRFGLIYR 156
Query: 146 RPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYV 205
RP G++ + D+G + ++ NWP V I +TDG RILGLGDLG G+GIP+GKL +Y
Sbjct: 157 RPHGLFITYNDRGHIFDVMKNWPEPNVRAICVTDGERILGLGDLGACGMGIPVGKLALYT 216
Query: 206 AAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265
A AGI P + LP+++DVGTNN LLED LY+GLRQ R+ G EY +DEFMEAV R+ +
Sbjct: 217 ALAGIKPHQCLPIVVDVGTNNIDLLEDPLYVGLRQKRVVGREYDEFIDEFMEAVVQRYGQ 276
Query: 266 -AIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQ 324
++QFEDF AF L++YR +C FNDDIQ R G S F D
Sbjct: 277 NTLIQFEDFGNHNAFRFLDKYRNTYCTFNDDIQGTASVAVAGLYASKRITGKS---FKDY 333
Query: 325 KIXXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK--NLDPAAA 382
+ V+A + G A N+ +++D DGL+TK RK NLD
Sbjct: 334 TFLFAGAGEAAIGIADLTVKAMVQ-DGVPIEEAYNRIYMVDIDGLLTKSRKVGNLDGHKI 392
Query: 383 PFAKDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFA 442
+AKD + + L E+V +KP F E+L+ M +++ +P +FA
Sbjct: 393 HYAKD------INPMSDLAEIVSTIKPSVLIGASAAAGIFTPEILRTMADNNE-RPVVFA 445
Query: 443 MSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 502
+SNPT AECTA DA+KH ++F+SGSPF V +G+ K + Q NN Y+FPG+GLG
Sbjct: 446 LSNPTSKAECTAEDAYKHTDARVIFSSGSPFPPVQIGD-KTFYPGQGNNAYIFPGVGLGV 504
Query: 503 LLSGARFITDGMLQQAAE 520
+ +G I D M AA+
Sbjct: 505 ICTGTHHIPDEMFLIAAQ 522
|
|
| WB|WBGene00012983 men-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 199/494 (40%), Positives = 279/494 (56%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
KRG D+L P NK F L E ++ EQQ R + R Q
Sbjct: 49 KRGIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQ-------Q 101
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
P+ +LAK+ L+ L DRNE LYYRVL DN+K+ PI+YTPTVG CQ++ ++R P+G
Sbjct: 102 PD---NLAKYIQLDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKG 158
Query: 150 MYFSAKDKG--EMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+Y + D ++ ++ NWP + V IV+TDG RILGLGDLG GIGIP+GKL +YVA
Sbjct: 159 LYITINDNSISKIHQILANWPTENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVAL 218
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK-A 266
AGI P+ LPV+LDVGT+N +LL D Y GLR+ R+ G EY ++VD FM+A R+ +
Sbjct: 219 AGIRPEWCLPVILDVGTDNSELLNDPFYTGLRRKRVRGPEYDTLVDNFMKAATKRFGRDT 278
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 326
++QFEDF + A+ L+RY+ +CMFNDDIQ R ++ + ++I
Sbjct: 279 LIQFEDFGNQNAYRLLDRYKGEYCMFNDDIQGTAAVVVAGLLASTR---ITKKKLSQERI 335
Query: 327 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFA 385
+M V+ G ++ A + +++D +GLIT R K+L FA
Sbjct: 336 VFLGAGGAATGVAEMCVRQMMD-EGLSEEEACGRIYMVDIEGLITTSRSKSLGERHVKFA 394
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 445
KD L + +LLEVV+ VKP F E+++K M + +P IFA+SN
Sbjct: 395 KD------LPDTKNLLEVVKTVKPGALIGASTVAGAFTEDIIKEMARLNP-RPIIFALSN 447
Query: 446 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505
PT AECTA A++ ++FASGSPFENV++ NGK+ Q NN Y+FPG+ LG +L
Sbjct: 448 PTSKAECTAETAYRCTNGAVLFASGSPFENVEM-NGKLYKPGQGNNAYIFPGVALGAVLF 506
Query: 506 GARFITDGMLQQAA 519
+ I D + AA
Sbjct: 507 RTKNIPDKLFLLAA 520
|
|
| ZFIN|ZDB-GENE-041111-294 me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 194/498 (38%), Positives = 269/498 (54%)
Query: 24 GPCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLE 83
G KRG DI +P NK F L E +S + Q R M+S+
Sbjct: 41 GTVFTRKRGYDITRNPHLNKGMAFTLEERLQLGIHGLLPPCFLSQDVQVLRVMKSYE--- 97
Query: 84 KNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGL 143
T P L K+ +L L DRNE L+YRVL +I++F PI+YTPTVGL CQ Y
Sbjct: 98 --TRSNP-----LDKYILLMTLQDRNEKLFYRVLTSDIEEFMPIVYTPTVGLACQQYGLA 150
Query: 144 FRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDV 203
FRRPRG++ + DKG + +M+ +WP + + IV+TDG RILGLGDLG G+GIP+GKL +
Sbjct: 151 FRRPRGLFITIHDKGHIATMLNSWPEEDIKAIVVTDGERILGLGDLGGYGMGIPVGKLAL 210
Query: 204 YVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW 263
Y A G+ PQ+ LPV+LDVGT+NQ LL+D LY+GL+ R+ G+EY ++DEFM+AV ++
Sbjct: 211 YTACGGVPPQQCLPVLLDVGTDNQTLLDDPLYIGLKHKRVRGKEYDDLIDEFMQAVTDKY 270
Query: 264 P-KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFA 322
++QFEDF AF L +YR R+C FNDDIQ + ++ +
Sbjct: 271 GMNCLIQFEDFANSNAFRILNKYRNRYCTFNDDIQGTASVAVAGILAALK---ITKNKLS 327
Query: 323 DQKIXXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382
D K + + A A+ G A A + +++D GLI K R +L+
Sbjct: 328 DHKFVFQGAGEAALGIAHLLIMAMAK-EGIPHAEAAQRIWMVDSKGLIVKGRSHLNHEKE 386
Query: 383 PFAKDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFA 442
FA D L E VV +KP F E+++K M ++ +P IFA
Sbjct: 387 EFAHDHPHIKTLEE------VVETIKPTAIIGVAAIGGAFTEKIIKNMAANNE-RPIIFA 439
Query: 443 MSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 502
+SNPT AECTA + +FASGSPF+ V L +G+ + Q NN Y+FPG+ LG
Sbjct: 440 LSNPTSKAECTAEQCYTLTEGRGIFASGSPFKKVTLADGRSFYPGQGNNAYVFPGVALGV 499
Query: 503 LLSGARFITDGMLQQAAE 520
+ G R I+D + AE
Sbjct: 500 IACGVRHISDDIFLTTAE 517
|
|
| MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 192/493 (38%), Positives = 268/493 (54%)
Query: 29 HKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEG 88
H+RG + DP NKD F L E +IS E Q R +++F L + +
Sbjct: 12 HQRGYLLTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFD- 70
Query: 89 QPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPR 148
++ +L L DRNE L+Y VL+ +++ F PI+YTPTVGL CQ YS FR+PR
Sbjct: 71 ---------RYLLLMDLQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPR 121
Query: 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAA 208
G++ S DKG + S++ WP V IV+TDG RILGLGDLG G+GIP+GKL +Y A
Sbjct: 122 GLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACG 181
Query: 209 GINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAI 267
G+NPQ+ LP+ LDVGT N++LL+D LY+GLR R+ G EY + +DEFMEA +++ +
Sbjct: 182 GVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCL 241
Query: 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIX 327
+QFEDF + AF L +YR ++C FNDDIQ R ++ +DQ +
Sbjct: 242 IQFEDFANRNAFRLLNKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTVL 298
Query: 328 XXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387
+ V A + G + AR K +L+D GLI K R +L FA +
Sbjct: 299 FQGAGEAALGIAHLVVMAMEK-EGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAHE 357
Query: 388 PGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPT 447
+ L +V+K+KP F E++LK M + +P IFA+SNPT
Sbjct: 358 HEEMKNLEA------IVQKIKPTALIGVAAIGGAFTEQILKDMAAFNE-RPIIFALSNPT 410
Query: 448 MNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 507
AEC+A +K +FASGSPF+ V L +G+ Q NN Y+FPG+ LG + G
Sbjct: 411 SKAECSAEQCYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGL 470
Query: 508 RFITDGMLQQAAE 520
R I D + AE
Sbjct: 471 RHIDDKVFLTTAE 483
|
|
| RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 191/493 (38%), Positives = 268/493 (54%)
Query: 29 HKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEG 88
H+RG + DP NKD F L E +++ E Q R +++F L + +
Sbjct: 12 HQRGYLLTRDPHLNKDLAFTLEERQQLKIHGLLPPCIVNQEIQVLRVIKNFERLNSDFD- 70
Query: 89 QPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPR 148
++ +L L DRNE L+Y VL+ N++ F PI+YTPTVGL CQ YS FR+PR
Sbjct: 71 ---------RYLLLMDLQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKPR 121
Query: 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAA 208
G++ S DKG + S++ WP V IV+TDG RILGLGDLG G+GIP+GKL +Y A
Sbjct: 122 GLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACG 181
Query: 209 GINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAI 267
G+NPQ+ LP+ LDVGT N++LL+D LY+GLR R+ G EY + +DEFMEA +++ +
Sbjct: 182 GVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCL 241
Query: 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIX 327
+QFEDF AF L +YR ++C FNDDIQ R ++ +DQ +
Sbjct: 242 IQFEDFANLNAFRLLNKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTVL 298
Query: 328 XXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387
+ V A + G + AR K +L+D GLI K R +L FA +
Sbjct: 299 FQGAGEAALGIAHLIVMAMEK-EGLSKEKARQKIWLVDSKGLIVKGRASLTEEKEVFAHE 357
Query: 388 PGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPT 447
+ L +V+K+KP F E++LK M + +P IFA+SNPT
Sbjct: 358 HEEMKNLEA------IVQKIKPTALIGVAAIGGAFTEQILKDMAAFNE-RPIIFALSNPT 410
Query: 448 MNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 507
AEC+A + +K +FASGSPF+ V L +G+ Q NN Y+FPG+ LG + G
Sbjct: 411 SKAECSAEECYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGL 470
Query: 508 RFITDGMLQQAAE 520
R I D + AE
Sbjct: 471 RHINDSVFLTTAE 483
|
|
| UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 191/493 (38%), Positives = 268/493 (54%)
Query: 29 HKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEG 88
H+RG + DP NKD F L E +++ E Q R +++F L + +
Sbjct: 12 HQRGYLLTRDPHLNKDLAFTLEERQQLKIHGLLPPCIVNQEIQVLRVIKNFERLNSDFD- 70
Query: 89 QPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPR 148
++ +L L DRNE L+Y VL+ N++ F PI+YTPTVGL CQ YS FR+PR
Sbjct: 71 ---------RYLLLMDLQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKPR 121
Query: 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAA 208
G++ S DKG + S++ WP V IV+TDG RILGLGDLG G+GIP+GKL +Y A
Sbjct: 122 GLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACG 181
Query: 209 GINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAI 267
G+NPQ+ LP+ LDVGT N++LL+D LY+GLR R+ G EY + +DEFMEA +++ +
Sbjct: 182 GVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCL 241
Query: 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIX 327
+QFEDF AF L +YR ++C FNDDIQ R ++ +DQ +
Sbjct: 242 IQFEDFANLNAFRLLNKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTVL 298
Query: 328 XXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387
+ V A + G + AR K +L+D GLI K R +L FA +
Sbjct: 299 FQGAGEAALGIAHLIVMAMEK-EGLSKEKARQKIWLVDSKGLIVKGRASLTEEKEVFAHE 357
Query: 388 PGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPT 447
+ L +V+K+KP F E++LK M + +P IFA+SNPT
Sbjct: 358 HEEMKNLEA------IVQKIKPTALIGVAAIGGAFTEQILKDMAAFNE-RPIIFALSNPT 410
Query: 448 MNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 507
AEC+A + +K +FASGSPF+ V L +G+ Q NN Y+FPG+ LG + G
Sbjct: 411 SKAECSAEECYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGL 470
Query: 508 RFITDGMLQQAAE 520
R I D + AE
Sbjct: 471 RHINDSVFLTTAE 483
|
|
| MGI|MGI:1916679 Me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 196/499 (39%), Positives = 270/499 (54%)
Query: 23 PGPCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSL 82
P P + KRG D+ +P NK F L E +S + Q R M +
Sbjct: 41 PRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYE-- 98
Query: 83 EKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSG 142
N+ L K+ IL L DRNE L+YRVL +++ F PI+YTPTVGL CQ+Y
Sbjct: 99 --------NQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGL 150
Query: 143 LFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLD 202
FRRPRG++ + DKG + +M+ +WP + +V+TDG RILGLGDLG G+GIP+GKL
Sbjct: 151 TFRRPRGLFITIHDKGHIATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLA 210
Query: 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHAR 262
+Y A G+NPQ+ LPV+LDVGTNN++LL D LY+GL+ R+ GEEY ++DEFM+AV +
Sbjct: 211 LYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGEEYDDLLDEFMQAVTDK 270
Query: 263 WP-KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDF 321
+ ++QFEDF AF L +YR ++CMFNDDIQ R ++
Sbjct: 271 FGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALR---ITKNRL 327
Query: 322 ADQKIXXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381
++ + V A + G A K +++D GLI K R +L+
Sbjct: 328 SNHVFVFQGAGEAAMGIAHLLVMALEK-EGIPKTEAIKKIWMVDSKGLIVKGRSHLNHEK 386
Query: 382 APFAKDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIF 441
FA+D E SL EVVR VKP F E++L+ M S +P +F
Sbjct: 387 EMFAQDHP------EVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMA-SFHERPIVF 439
Query: 442 AMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLG 501
A+SNPT AECTA ++ +FASGSPF++V L +G+ Q NN Y+FPG+ LG
Sbjct: 440 ALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFTPGQGNNAYVFPGVALG 499
Query: 502 TLLSGARFITDGMLQQAAE 520
+ G R I D + AE
Sbjct: 500 VIAGGIRHIPDEIFLLTAE 518
|
|
| UNIPROTKB|E9PMB9 ME3 "Malic enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 199/502 (39%), Positives = 272/502 (54%)
Query: 23 PGPCM---VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESF 79
PGP + KRG D+ +P NK F L E +S + Q R M +
Sbjct: 38 PGPARPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYY 97
Query: 80 RSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQN 139
E Q + L K+ IL L DRNE L+YRVL +++ F PI+YTPTVGL CQ+
Sbjct: 98 -------ERQQS---DLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQH 147
Query: 140 YSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIG 199
Y FRRPRG++ + DKG + +M+ +WP + +V+TDG RILGLGDLG G+GIP+G
Sbjct: 148 YGLTFRRPRGLFITIHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVG 207
Query: 200 KLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAV 259
KL +Y A G+NPQ+ LPV+LDVGTNN++LL D LY+GL+ R+ G+ Y ++DEFM+AV
Sbjct: 208 KLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLLDEFMQAV 267
Query: 260 HARWP-KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSL 318
++ ++QFEDF AF L +YR ++CMFNDDIQ R ++
Sbjct: 268 TDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALR---ITK 324
Query: 319 TDFADQKIXXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378
++ + V A + G A A K +++D GLI K R +L+
Sbjct: 325 NKLSNHVFVFQGAGEAAMGIAHLLVMALEK-EGVPKAEATRKIWMVDSKGLIVKGRSHLN 383
Query: 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKP 438
FA+D E SL EVVR VKP F E++L+ M S +P
Sbjct: 384 HEKEMFAQDHP------EVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMA-SFHERP 436
Query: 439 AIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498
IFA+SNPT AECTA ++ +FASGSPF++V L +GK Q NN Y+FPG+
Sbjct: 437 IIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGKTFIPGQGNNAYVFPGV 496
Query: 499 GLGTLLSGARFITDGMLQQAAE 520
LG + G R I D + AE
Sbjct: 497 ALGVIAGGIRHIPDEIFLLTAE 518
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8E835 | MAO1_SHEB2 | 1, ., 1, ., 1, ., 3, 8 | 0.4338 | 0.8855 | 0.8398 | yes | no |
| A8H7G5 | MAO1_SHEPA | 1, ., 1, ., 1, ., 3, 8 | 0.4236 | 0.8855 | 0.8398 | yes | no |
| P06801 | MAOX_MOUSE | 1, ., 1, ., 1, ., 4, 0 | 0.4433 | 0.8855 | 0.8251 | yes | no |
| P13697 | MAOX_RAT | 1, ., 1, ., 1, ., 4, 0 | 0.4412 | 0.8855 | 0.8251 | yes | no |
| Q6MJE4 | MAO1_BDEBA | 1, ., 1, ., 1, ., 3, 8 | 0.4216 | 0.8986 | 0.8477 | yes | no |
| Q8EAP2 | MAO1_SHEON | 1, ., 1, ., 1, ., 3, 8 | 0.4276 | 0.8855 | 0.8398 | yes | no |
| Q8L7K9 | MAO2_ARATH | 1, ., 1, ., 1, ., 3, 9 | 0.8303 | 0.9437 | 0.8286 | yes | no |
| B5FEY5 | MAO1_VIBFM | 1, ., 1, ., 1, ., 3, 8 | 0.4136 | 0.8986 | 0.8523 | yes | no |
| O34389 | MAO3_BACSU | 1, ., 1, ., 1, ., 3, 8 | 0.3992 | 0.9155 | 0.8621 | yes | no |
| P37221 | MAOM_SOLTU | 1, ., 1, ., 1, ., 3, 9 | 0.6839 | 0.9662 | 0.8226 | N/A | no |
| P37224 | MAOM_AMAHP | 1, ., 1, ., 1, ., 3, 9 | 0.6485 | 0.9549 | 0.8170 | N/A | no |
| P37225 | MAON_SOLTU | 1, ., 1, ., 1, ., 3, 9 | 0.8418 | 0.9812 | 0.8702 | N/A | no |
| A6WSH0 | MAO1_SHEB8 | 1, ., 1, ., 1, ., 3, 8 | 0.4338 | 0.8855 | 0.8398 | yes | no |
| Q6TU48 | MAOX_DICDI | 1, ., 1, ., 1, ., 4, 0 | 0.4640 | 0.8742 | 0.8566 | yes | no |
| A0KT69 | MAO1_SHESA | 1, ., 1, ., 1, ., 3, 8 | 0.4297 | 0.8855 | 0.8398 | yes | no |
| A9L2F4 | MAO1_SHEB9 | 1, ., 1, ., 1, ., 3, 8 | 0.4338 | 0.8855 | 0.8398 | yes | no |
| B4T5V6 | MAO1_SALNS | 1, ., 1, ., 1, ., 3, 8 | 0.4247 | 0.8874 | 0.8371 | yes | no |
| B8CQT6 | MAO1_SHEPW | 1, ., 1, ., 1, ., 3, 8 | 0.4236 | 0.8855 | 0.8398 | yes | no |
| B0TRQ2 | MAO1_SHEHH | 1, ., 1, ., 1, ., 3, 8 | 0.4215 | 0.8855 | 0.8398 | yes | no |
| A4Y3I1 | MAO1_SHEPC | 1, ., 1, ., 1, ., 3, 8 | 0.4358 | 0.8855 | 0.8398 | yes | no |
| P48163 | MAOX_HUMAN | 1, ., 1, ., 1, ., 4, 0 | 0.4453 | 0.8855 | 0.8251 | yes | no |
| Q0HFA9 | MAO1_SHESM | 1, ., 1, ., 1, ., 3, 8 | 0.4297 | 0.8855 | 0.8398 | yes | no |
| Q6FFL8 | MAO1_ACIAD | 1, ., 1, ., 1, ., 3, 8 | 0.412 | 0.8949 | 0.8427 | yes | no |
| Q0HYM7 | MAO1_SHESR | 1, ., 1, ., 1, ., 3, 8 | 0.4297 | 0.8855 | 0.8398 | yes | no |
| A3D0E1 | MAO1_SHEB5 | 1, ., 1, ., 1, ., 3, 8 | 0.4338 | 0.8855 | 0.8398 | yes | no |
| B2VIF2 | MAO1_ERWT9 | 1, ., 1, ., 1, ., 3, 8 | 0.4297 | 0.8855 | 0.8353 | yes | no |
| A1RNF8 | MAO1_SHESW | 1, ., 1, ., 1, ., 3, 8 | 0.4358 | 0.8855 | 0.8398 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.983 |
| 3rd Layer | 1.1.1.39 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 533 | |||
| PLN03129 | 581 | PLN03129, PLN03129, NADP-dependent malic enzyme; P | 0.0 | |
| PRK13529 | 563 | PRK13529, PRK13529, malate dehydrogenase; Provisio | 0.0 | |
| PTZ00317 | 559 | PTZ00317, PTZ00317, NADP-dependent malic enzyme; P | 0.0 | |
| pfam00390 | 182 | pfam00390, malic, Malic enzyme, N-terminal domain | 1e-103 | |
| cd05312 | 279 | cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma | 2e-96 | |
| COG0281 | 432 | COG0281, SfcA, Malic enzyme [Energy production and | 4e-94 | |
| pfam03949 | 255 | pfam03949, Malic_M, Malic enzyme, NAD binding doma | 8e-90 | |
| smart00919 | 231 | smart00919, Malic_M, Malic enzyme, NAD binding dom | 5e-68 | |
| cd00762 | 254 | cd00762, NAD_bind_malic_enz, NAD(P) binding domain | 1e-50 | |
| cd05311 | 226 | cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma | 8e-23 | |
| PRK12862 | 763 | PRK12862, PRK12862, malic enzyme; Reviewed | 2e-20 | |
| PRK07232 | 752 | PRK07232, PRK07232, bifunctional malic enzyme oxid | 6e-18 | |
| PRK12861 | 764 | PRK12861, PRK12861, malic enzyme; Reviewed | 7e-14 | |
| cd01620 | 317 | cd01620, Ala_dh_like, Alanine dehydrogenase and re | 0.004 |
| >gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 859 bits (2221), Expect = 0.0
Identities = 288/515 (55%), Positives = 346/515 (67%), Gaps = 23/515 (4%)
Query: 8 AASVLSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVIS 67
V P + G D+L DP +NK F TERDRLGLRGLLPP V+S
Sbjct: 18 VEDVYGEDAATEEQPVTPWVRVASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLS 77
Query: 68 FEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPI 127
E Q RFME+ R+LE LAK+R L L +RNE L+YRVLIDNI++ PI
Sbjct: 78 QELQVKRFMENLRALE----------SPLAKYRALMDLQERNERLFYRVLIDNIEELLPI 127
Query: 128 IYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLG 187
+YTPTVG CQ Y LFRRPRG+Y S KDKG ++SM+ NWP + V +IV+TDG RILGLG
Sbjct: 128 VYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLG 187
Query: 188 DLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEE 247
DLGVQG+GIP+GKLD+Y AA GI P +LPV +DVGTNN+KLL D Y+GLRQPRL GEE
Sbjct: 188 DLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEE 247
Query: 248 YLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAG 306
Y +VDEFMEAV RW PK +VQFEDF K AF L+RYR FNDDIQGTA VALAG
Sbjct: 248 YDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAG 307
Query: 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366
LL +RA G D ADQ+I+ GAG AG G+ ++ A +R G ++ AR + +L+D
Sbjct: 308 LLAALRATG---GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDS 364
Query: 367 DGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEE 425
GL+TK RK+ L P PFA D GASLLE V+ +KP VL+GLSGVGG F +E
Sbjct: 365 KGLVTKSRKDSLQPFKKPFAHD------HEPGASLLEAVKAIKPTVLIGLSGVGGTFTKE 418
Query: 426 VLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGH 485
VL+AM S + +P IFA+SNPT AECTA +A+ G +FASGSPF+ V+ NGK H
Sbjct: 419 VLEAM-ASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEY-NGKTFH 476
Query: 486 VNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
QANN Y+FPGIGLG LLSGA +TD ML AAE
Sbjct: 477 PGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAE 511
|
Length = 581 |
| >gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 643 bits (1661), Expect = 0.0
Identities = 233/501 (46%), Positives = 309/501 (61%), Gaps = 19/501 (3%)
Query: 23 PGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSL 82
P RG +L++P NK T F ER+ GL GLLPP V + E+Q R ++S
Sbjct: 8 KRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSK 67
Query: 83 EKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSG 142
+ L K L L DRNETL+YR+L D++++ PIIYTPTVG C+ +S
Sbjct: 68 PTD----------LEKHIYLRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSH 117
Query: 143 LFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLD 202
++RRPRG++ S D+ + ++ N P + + +IV+TDG RILG+GD G+ G+GIPIGKL
Sbjct: 118 IYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLS 177
Query: 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHAR 262
+Y A GI+P R LPV+LDVGTNN++LL D LYLG R PR+ GEEY VDEF++AV R
Sbjct: 178 LYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRR 237
Query: 263 WPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFA 322
+P A++QFEDF K A LERYR C FNDDIQGT V LAGLL ++ G L+
Sbjct: 238 FPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLS--- 294
Query: 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382
DQ+IV +GAGSAG G+ V A R G ++ AR +FF++D+ GL+T + +L
Sbjct: 295 DQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQK 353
Query: 383 PFAKDPGDFMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPA 439
P+A+ + + SLLEVVR VKP VL+G+SG G F EE++K M +P
Sbjct: 354 PYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCE-RPI 412
Query: 440 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499
IF +SNPT AE T D + A+GSPF V+ NGK + Q NN Y+FPG+G
Sbjct: 413 IFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEY-NGKTYPIGQCNNAYIFPGLG 471
Query: 500 LGTLLSGARFITDGMLQQAAE 520
LG + SGAR +TDGML AA
Sbjct: 472 LGVIASGARRVTDGMLMAAAH 492
|
Length = 563 |
| >gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 627 bits (1620), Expect = 0.0
Identities = 245/509 (48%), Positives = 314/509 (61%), Gaps = 22/509 (4%)
Query: 12 LSRSRRFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQ 71
L++ +P + RG D+L + + NK T F ER+ LG+ GLLPP V + EQQ
Sbjct: 3 LAKMAHSKEKVP----SNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQ 58
Query: 72 YARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTP 131
R F +E K++ L +HD NETL+Y +L+ +K+ PIIYTP
Sbjct: 59 VERLWTQFNRIETPIN----------KYQFLRNIHDTNETLFYALLLKYLKELLPIIYTP 108
Query: 132 TVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV 191
TVG CQNYS LF+R RG+Y S KG++ ++ NWP VD+IV+TDGSRILGLGDLG
Sbjct: 109 TVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGA 168
Query: 192 QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSI 251
G+GI IGKL +YVA GINP R+LPV+LDVGTNN+KLL D LYLGLR+ RL+ +EY +
Sbjct: 169 NGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYEL 228
Query: 252 VDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTV 311
+DEFMEAV +RWP A+VQFEDF F+ LERY+ ++ FNDDIQGT V AG L +
Sbjct: 229 LDEFMEAVSSRWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNAL 288
Query: 312 RAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371
+ G+ +Q+IV GAGSA +GV AA G A F+L+D GL+T
Sbjct: 289 KLSGVPPE---EQRIVFFGAGSAAIGVANNIADLAA-EYGVTREEALKSFYLVDSKGLVT 344
Query: 372 KERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430
R + L PFA+ +L +VVR VKP LLGLSGVGGVF EEV+K M
Sbjct: 345 TTRGDKLAKHKVPFARTDISAEDSS-LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTM 403
Query: 431 RESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQAN 490
S+ +P IF +SNPT AECTA DA+K + ASGSPF V L NGK +Q N
Sbjct: 404 A-SNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTL-NGKTIQPSQGN 461
Query: 491 NMYLFPGIGLGTLLSGARFITDGMLQQAA 519
N+Y+FPG+GLG ++ +I D ML AA
Sbjct: 462 NLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490
|
Length = 559 |
| >gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = e-103
Identities = 102/182 (56%), Positives = 132/182 (72%), Gaps = 1/182 (0%)
Query: 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIY 165
+NE L+Y++L +I++ PI+YTPTVG CQ S ++RRPRG+Y S + G++ ++
Sbjct: 1 QGKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILK 60
Query: 166 NWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN 225
NWP + V +IV+TDG RILGLGDLGV G+ I GKL +Y A AGI+P R+LP++LDVGTN
Sbjct: 61 NWPEEDVRVIVVTDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTN 120
Query: 226 NQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAFETLER 284
N+KLL D LYLGLR R+ GEEY VDEF+EAV A + P +QFEDF AFE LER
Sbjct: 121 NEKLLNDPLYLGLRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILER 180
Query: 285 YR 286
YR
Sbjct: 181 YR 182
|
Length = 182 |
| >gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 2e-96
Identities = 121/225 (53%), Positives = 151/225 (67%), Gaps = 10/225 (4%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
IQGTA VALAGLL +R G +DQ+I+ +GAGSAG+G+ + V A R G ++
Sbjct: 1 IQGTAAVALAGLLAALRITG---KPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEE 56
Query: 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415
AR K +L+D GL+TK+RK+L P PFA+ +EG SLLEVV+ VKP VL+GL
Sbjct: 57 EARKKIWLVDSKGLLTKDRKDLTPFKKPFARK----DEEKEGKSLLEVVKAVKPTVLIGL 112
Query: 416 SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475
SGVGG F EEV++AM +S+ +P IFA+SNPT AECTA DA+K +FASGSPF
Sbjct: 113 SGVGGAFTEEVVRAMAKSNE-RPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPP 171
Query: 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
V+ NGK Q NN Y+FPGIGLG +LSGAR ITD M AAE
Sbjct: 172 VE-YNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAE 215
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279 |
| >gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 4e-94
Identities = 125/420 (29%), Positives = 191/420 (45%), Gaps = 81/420 (19%)
Query: 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMM 161
+ D + L Y + + ++ P+ YTP V C+ S R+ S +G ++
Sbjct: 24 KHEYLDPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----SYTARGNLV 79
Query: 162 SMIYNWPAQQVDMIVLTDGSRILGLGDLG-VQGIGIPIGKLDVYVAAAGINPQRILPVML 220
V+TDG+ +LGLG++G + G + GK ++ A AGI+ +LP+ L
Sbjct: 80 -------------AVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIEL 123
Query: 221 DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFE 280
DVGTNN+ + EF++A+ + ++ D +A E
Sbjct: 124 DVGTNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIE 159
Query: 281 TLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLK 340
RYR +F+DD QGTA V LA LL ++ G DQKIV+ GAG+AG+ +
Sbjct: 160 ERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTG---KKLKDQKIVINGAGAAGIAIAD 216
Query: 341 MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400
+ V A + F++D+ GL+ R++L +AK D +L
Sbjct: 217 LLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDT----GERTL 263
Query: 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 460
+ VL+G+SGV G F EE++K M + P IFA++NPT E T DA +
Sbjct: 264 DLAL--AGADVLIGVSGV-GAFTEEMVKEM----AKHPIIFALANPTP--EITPEDAKEW 314
Query: 461 AGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
+ A+G + NQ NN+ +FPGI G L A+ ITD M AAE
Sbjct: 315 GDGAAIVATGRSD-----------YPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAE 363
|
Length = 432 |
| >gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 8e-90
Identities = 103/225 (45%), Positives = 143/225 (63%), Gaps = 9/225 (4%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
IQGTA V LAGLL ++ G L+D QKIV GAG+AG+G+ ++ V A R G ++
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSD---QKIVFFGAGAAGIGIAELLVAAMVRE-GLSEE 56
Query: 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415
AR +++D+ GL+T+ R++L+P PFA+ + + +L E V+ KP VL+G+
Sbjct: 57 EARKNIWMVDRKGLLTEGREDLNPFKKPFARKTNEV---KGWGTLAEAVKGAKPDVLIGV 113
Query: 416 SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475
SGV GVF EE+++AM E +P IFA+SNPT AE T +A+K +FA+GSPF
Sbjct: 114 SGVPGVFTEEIVRAMAEHTE-RPIIFALSNPTPKAEITPEEAYKWTAGRALFATGSPFPP 172
Query: 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
V+L NG+ + NQ NN+ +FPGIGLG L AR ITD M AAE
Sbjct: 173 VEL-NGRSDYPNQVNNVLIFPGIGLGALDVRARRITDEMFLAAAE 216
|
Length = 255 |
| >gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 5e-68
Identities = 93/226 (41%), Positives = 123/226 (54%), Gaps = 36/226 (15%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
QGTA V LAGLL ++ G DQ+IVV GAG+AG+G+ K+ V A +
Sbjct: 1 QQGTAIVVLAGLLNALKITG---KKLEDQRIVVNGAGAAGIGIAKLLVAAGVK------- 50
Query: 356 FARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG 414
R +L+D GL+TK R+ NL+P PFA+ + RE +L E V+ VL+G
Sbjct: 51 --RKNIWLVDSKGLLTKGREDNLNPYKKPFARKTNE----RETGTLEEAVKG--ADVLIG 102
Query: 415 LSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474
+SG GG F EE++K+M E +P IFA+SNPT E TAADA++ + A+G
Sbjct: 103 VSGPGGAFTEEMVKSMAE----RPIIFALSNPTPEIEPTAADAYRWT--AAIVATGRSDY 156
Query: 475 NVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
NQ NN+ +FPGI LG L AR ITD M AAE
Sbjct: 157 P-----------NQVNNVLIFPGIFLGALDVRARRITDEMKLAAAE 191
|
Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231 |
| >gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 1e-50
Identities = 91/228 (39%), Positives = 125/228 (54%), Gaps = 15/228 (6%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
IQGTA VA+AGLL A ++ ++ K++ GAG+A LG+ + V + G +
Sbjct: 1 IQGTASVAVAGLLA---ALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKE 56
Query: 356 FARNKFFLLDKDGLITKERKNLDPA---AAPFAKDPGDFMGLREGASLLEVVRKVKPHVL 412
A + + +D+ GL+ K RK P A FA RE L + V KP L
Sbjct: 57 EACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP------ERESGDLEDAVEAAKPDFL 110
Query: 413 LGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP 472
+G+S VGG F EV++A E + +P IFA+SNPT AECTA +A+ +FASGSP
Sbjct: 111 IGVSRVGGAFTPEVIRAXAEINE-RPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSP 169
Query: 473 FENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
F V+L NG Q NN+Y+FPG+ LG +L R ITD + AAE
Sbjct: 170 FHPVEL-NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAE 216
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254 |
| >gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 8e-23
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 38/225 (16%)
Query: 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAF 356
GTA V LAGLL ++ G + + KIV+ GAG+AG+ + ++ + A A+
Sbjct: 2 HGTAIVTLAGLLNALKLVGKKIEEV---KIVINGAGAAGIAIARLLLAAGAK-------- 50
Query: 357 ARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415
++D G+I + R++ L+P AK+ + G +L E ++ V +G+
Sbjct: 51 -PENIVVVDSKGVIYEGREDDLNPDKNEIAKE---TNPEKTGGTLKEALKGAD--VFIGV 104
Query: 416 SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475
S GV +E++K M + P +FA++NP E +A K AG +IV
Sbjct: 105 S-RPGVVKKEMIKKMAK----DPIVFALANPV--PEIWPEEA-KEAGADIV--------- 147
Query: 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
G+ NQ NN+ FPGI G L A IT+ M AAE
Sbjct: 148 ---ATGRSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAE 189
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226 |
| >gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-20
Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 51/243 (20%)
Query: 279 FETLERYRKRFCM----FNDDIQGTAGVALAGLLGTVRAQGLSLT--DFADQKIVVVGAG 332
F R+R M F+DD GTA + A LL GL L D D K+V GAG
Sbjct: 150 FYIERELRER--MKIPVFHDDQHGTAIIVAAALL-----NGLKLVGKDIEDVKLVASGAG 202
Query: 333 SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-DPAAAPFAKDPGDF 391
+A L L + V + R ++ D G++ + R L DP A +A+
Sbjct: 203 AAALACLDLLVSLGVK---------RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--- 250
Query: 392 MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAE 451
+ +L EV+ V LGLS GV E++K M +P IFA++NPT E
Sbjct: 251 ----DARTLAEVI--EGADVFLGLSA-AGVLKPEMVKKMAP----RPLIFALANPT--PE 297
Query: 452 CTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFIT 511
+A + I+ G+ + NQ NN+ FP I G L GA I
Sbjct: 298 ILPEEARAVRPDAII------------ATGRSDYPNQVNNVLCFPYIFRGALDVGATTIN 345
Query: 512 DGM 514
+ M
Sbjct: 346 EEM 348
|
Length = 763 |
| >gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 6e-18
Identities = 96/370 (25%), Positives = 142/370 (38%), Gaps = 127/370 (34%)
Query: 176 VLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVM---------------- 219
V+++G+ +LGLG++G A A PVM
Sbjct: 67 VISNGTAVLGLGNIG---------------ALAS------KPVMEGKGVLFKKFAGIDVF 105
Query: 220 -LDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI------VQFED 272
++V + D+F+EAV A+ + ED
Sbjct: 106 DIEVDEED-------------------------PDKFIEAV-----AALEPTFGGINLED 135
Query: 273 FQMKWAFETLERYRKRFCM----FNDDIQGTAGVALAGLLGTVRAQGLSLT--DFADQKI 326
+ F E+ R+R M F+DD GTA ++ A LL L L D KI
Sbjct: 136 IKAPECFYIEEKLRER--MDIPVFHDDQHGTAIISAAALL-----NALELVGKKIEDVKI 188
Query: 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 385
VV GAG+A + L + V A+ + + D G+I K R +D A +A
Sbjct: 189 VVSGAGAAAIACLNLLVALGAK---------KENIIVCDSKGVIYKGRTEGMDEWKAAYA 239
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445
D + +L E + V LGLS GV E++K+M + P IFA++N
Sbjct: 240 VD-------TDARTLAEAI--EGADVFLGLS-AAGVLTPEMVKSMAD----NPIIFALAN 285
Query: 446 PTMNAECTAADAFKHAGENIVFASG-SPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 504
P + E T +A K + + A+G S + NQ NN+ FP I G L
Sbjct: 286 P--DPEITPEEA-KAVRPDAIIATGRSDYP------------NQVNNVLCFPYIFRGALD 330
Query: 505 SGARFITDGM 514
GA I + M
Sbjct: 331 VGATTINEEM 340
|
Length = 752 |
| >gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 7e-14
Identities = 71/250 (28%), Positives = 108/250 (43%), Gaps = 43/250 (17%)
Query: 268 VQFEDFQMKWAFETLERYRKRFCM--FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQK 325
+ ED + F + R+R + F+DD GTA A + ++ G + K
Sbjct: 135 INLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVG---KSIKEVK 191
Query: 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-DPAAAPF 384
+V GAG+A L L + V ++ D +G++ + R L DP F
Sbjct: 192 VVTSGAGAAALACLDLLVDLG---------LPVENIWVTDIEGVVYRGRTTLMDPDKERF 242
Query: 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444
A++ + +L EV+ V LGLS GGV E+LKAM + +P I A++
Sbjct: 243 AQET-------DARTLAEVIGGAD--VFLGLS-AGGVLKAEMLKAM----AARPLILALA 288
Query: 445 NPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 504
NPT A A + +++V A+G + + NQ NN+ FP I G L
Sbjct: 289 NPTPEIFPELAHATR---DDVVIATG-----------RSDYPNQVNNVLCFPYIFRGALD 334
Query: 505 SGARFITDGM 514
GA IT M
Sbjct: 335 VGATTITREM 344
|
Length = 764 |
| >gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVD--EFMEAVHARWPKAIVQFEDFQMK--- 276
V +++ + + L++P E EY I + +HA + +V+ +
Sbjct: 57 VPAASKEAYSADIIVKLKEP--EFAEYDLIKKGQLLVTFLHAATNRGVVE----VLMRKK 110
Query: 277 ---WAFETLERYRKRFCMFNDDIQGTAGVALAG-LLGTVRAQGLSLTDFADQ-KIVVVGA 331
+A E LE + N +I G AGV L L ++ + K++++GA
Sbjct: 111 LTAYALEDLENDFRPRLAPNSNIAGYAGVQLGAYELARIQGGRMGGAGGVPPAKVLIIGA 170
Query: 332 GSAGLGVLKMAVQAAA 347
G GLG K+A + A
Sbjct: 171 GVVGLGAAKIAKKLGA 186
|
Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 533 | |||
| KOG1257 | 582 | consensus NADP+-dependent malic enzyme [Energy pro | 100.0 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 100.0 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 100.0 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 100.0 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 100.0 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 100.0 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 100.0 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 100.0 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 100.0 | |
| PF00390 | 182 | malic: Malic enzyme, N-terminal domain; InterPro: | 100.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 100.0 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.79 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.97 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.6 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.35 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.35 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.22 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.06 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.84 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.78 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.75 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 96.72 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.56 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.52 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.42 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.42 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.41 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.34 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.07 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.02 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.99 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.93 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.89 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 95.73 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.7 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.55 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.49 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.26 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 95.2 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.1 | |
| PLN00106 | 323 | malate dehydrogenase | 94.97 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.89 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.76 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.45 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.34 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.19 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.91 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.77 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 93.72 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 93.59 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 93.54 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.44 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 93.33 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.22 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 93.22 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 93.09 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 92.98 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 92.94 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.56 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 92.47 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 92.32 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 92.27 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.2 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 92.19 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 92.15 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 92.15 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.08 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.04 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 92.01 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 91.98 | |
| PRK02842 | 427 | light-independent protochlorophyllide reductase su | 91.9 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 91.88 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 91.87 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.83 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 91.69 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 91.59 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.55 | |
| PLN02928 | 347 | oxidoreductase family protein | 91.48 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 91.47 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 91.44 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 91.22 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 91.2 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.01 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.97 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.96 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.95 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 90.86 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 90.83 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.69 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.49 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 90.34 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 90.33 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 90.28 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.12 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.12 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 90.11 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 90.02 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 89.94 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 89.48 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 89.28 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 89.26 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 89.17 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.99 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 88.92 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 88.76 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 88.72 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.35 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 88.34 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 88.14 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 88.13 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.09 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 88.09 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 87.81 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 87.81 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 87.81 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 87.74 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 87.73 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.67 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.64 | |
| PLN02602 | 350 | lactate dehydrogenase | 87.53 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 87.51 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 87.48 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 87.14 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.13 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 87.04 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 87.03 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 86.97 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 86.95 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.93 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 86.73 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 86.62 | |
| PRK08223 | 287 | hypothetical protein; Validated | 86.49 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 86.32 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.27 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 86.17 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 85.97 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 85.96 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 85.93 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 85.91 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 85.89 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 85.83 | |
| cd01979 | 396 | Pchlide_reductase_N Pchlide_reductase_N: N protein | 85.8 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 85.8 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.78 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 85.67 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 85.64 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 85.51 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 85.29 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 85.27 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.26 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 85.2 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.06 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 84.95 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 84.94 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 84.92 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.89 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.86 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 84.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 84.79 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 84.78 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 84.67 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 84.6 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 84.42 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.25 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 84.25 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 84.22 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 84.14 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 84.11 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 84.1 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 83.94 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 83.93 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 83.71 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.71 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 83.66 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 83.36 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.32 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 83.22 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 83.19 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 83.17 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 83.16 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 83.12 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 83.05 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.03 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.87 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 82.7 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 82.46 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 82.33 | |
| KOG2337 | 669 | consensus Ubiquitin activating E1 enzyme-like prot | 82.17 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 82.17 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.79 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 81.76 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 81.51 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 81.44 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 81.25 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 81.0 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 80.8 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 80.61 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 80.43 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 80.4 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.35 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 80.31 |
| >KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-197 Score=1542.39 Aligned_cols=485 Identities=54% Similarity=0.912 Sum_probs=476.5
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHH
Q 009519 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (533)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (533)
++..+++|+++|+||++|||+|||.+||++|||||||||.|.|+|+|++|++.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 009519 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (533)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rIL 184 (533)
||+|||+|||+++++|+||+||||||||||+|||+||.+||+|+|||||++|+|||.++|+|||+++|++||||||+|||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 009519 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (533)
Q Consensus 185 GLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~- 263 (533)
||||||++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|+|||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHH
Q 009519 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (533)
Q Consensus 264 P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (533)
|+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCC
Q 009519 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (533)
Q Consensus 344 ~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F 422 (533)
.+|+ ++|+|++||+++|||+|++|||+++|+ +++++|++||++.+++ .+|+|||+.||||||||+|+++|+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 679999999999999999999999996 9999999999998764 5899999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHH
Q 009519 423 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 502 (533)
Q Consensus 423 teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~ 502 (533)
||||||+|++ +|||||||||||||++|||||||||+||+||||||||||||||+|+ ||+|+||||||+|+|||||||+
T Consensus 404 teevl~~Ma~-~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~-gK~~~pgQ~NN~yiFPGi~Lg~ 481 (582)
T KOG1257|consen 404 TEEVLRAMAK-SNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYN-GKVYVPGQGNNAYIFPGIGLGV 481 (582)
T ss_pred CHHHHHHHHh-cCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeC-CcEecccCCceeEecchHHHHH
Confidence 9999999975 9999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 503 LLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 503 l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
+++++++|+|+||++||++||+.+++|+.
T Consensus 482 vlsg~~~i~D~mfl~Aae~LA~~v~~e~~ 510 (582)
T KOG1257|consen 482 VLSGARRIPDEMFLAAAEALAEQVSEEEL 510 (582)
T ss_pred HHcCCccCCHHHHHHHHHHHHhhCCHhHh
Confidence 99999999999999999999999999875
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-196 Score=1563.84 Aligned_cols=495 Identities=47% Similarity=0.798 Sum_probs=480.1
Q ss_pred CCCceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHH
Q 009519 22 IPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRI 101 (533)
Q Consensus 22 ~~~~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~ 101 (533)
....+.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+|
T Consensus 7 ~~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~ 76 (563)
T PRK13529 7 KKRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIY 76 (563)
T ss_pred CCcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHH
Confidence 34445667899999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCc
Q 009519 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGS 181 (533)
Q Consensus 102 L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~ 181 (533)
|++||++||+||||++++|++||||||||||||+|||+||++||+|||||||++|+|+|+++++|||.++|++|||||||
T Consensus 77 L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~ 156 (563)
T PRK13529 77 LRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGE 156 (563)
T ss_pred HHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHH
Q 009519 182 RILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA 261 (533)
Q Consensus 182 rILGLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~ 261 (533)
|||||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||||++|++||+|+||||++|++
T Consensus 157 rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~ 236 (563)
T PRK13529 157 RILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKR 236 (563)
T ss_pred eeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHH
Q 009519 262 RWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (533)
Q Consensus 262 ~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (533)
+||+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+|
T Consensus 237 ~~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~l 313 (563)
T PRK13529 237 RFPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIADQ 313 (563)
T ss_pred hCCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCc---cCCCCHHHHhcccCCcEEEEeccC
Q 009519 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL---REGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 342 l~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~---~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
|+++|+ ++|+|+|||++|||+||++|||+++|++|+++|++|||+.++...| ....+|+|||+++|||||||+|++
T Consensus 314 l~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~ 392 (563)
T PRK13529 314 IVAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQ 392 (563)
T ss_pred HHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCC
Confidence 999999 6899999999999999999999999988999999999986653222 234789999999999999999999
Q ss_pred CCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhh
Q 009519 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 419 ~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
+|+|||||||+|++ +|+|||||||||||++|||||||||+||+||||||||||||||+|+ |++++||||||+||||||
T Consensus 393 ~g~Ft~evv~~Ma~-~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGi 470 (563)
T PRK13529 393 PGAFTEEIVKEMAA-HCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN-GKTYPIGQCNNAYIFPGL 470 (563)
T ss_pred CCCCCHHHHHHHHh-cCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC-CeEeccCcCcceeecccc
Confidence 99999999999975 9999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred hHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 499 GLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 499 glG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|||+++++|++|||+||++||++||+++++++++
T Consensus 471 glGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~ 504 (563)
T PRK13529 471 GLGVIASGARRVTDGMLMAAAHALADCVPLAKPG 504 (563)
T ss_pred hhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCC
Confidence 9999999999999999999999999999998765
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-195 Score=1553.43 Aligned_cols=491 Identities=49% Similarity=0.849 Sum_probs=476.0
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHH
Q 009519 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (533)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (533)
.+.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++
T Consensus 12 ~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~~L~~ 81 (559)
T PTZ00317 12 KVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQFLRN 81 (559)
T ss_pred ccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 009519 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (533)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rIL 184 (533)
||++||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||
T Consensus 82 L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rIL 161 (559)
T PTZ00317 82 IHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRIL 161 (559)
T ss_pred HhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 009519 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (533)
Q Consensus 185 GLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P 264 (533)
||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+|||+|+||||++|+++||
T Consensus 162 GLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P 241 (559)
T PTZ00317 162 GLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWP 241 (559)
T ss_pred ccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHH
Q 009519 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 265 ~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 344 (533)
+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||++
T Consensus 242 ~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~ll~~ 318 (559)
T PTZ00317 242 NAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVANNIAD 318 (559)
T ss_pred CeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCC
Q 009519 345 AAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFN 423 (533)
Q Consensus 345 ~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft 423 (533)
+|+ ++|+|+|||++|||+||++|||+++|++ |+++|++|||+.++..+ ....+|+|||+.+|||||||+|+++|+||
T Consensus 319 ~m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft 396 (559)
T PTZ00317 319 LAA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVGGVFT 396 (559)
T ss_pred HHH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCCCCCC
Confidence 999 6899999999999999999999999965 99999999997532110 12579999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHH
Q 009519 424 EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTL 503 (533)
Q Consensus 424 eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l 503 (533)
|||||+|++ +|+|||||||||||++|||||||||+||+|||||||||||+||+| +||+++||||||+|||||||||++
T Consensus 397 ~evv~~Ma~-~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~-~G~~~~p~Q~NN~~iFPGiglG~l 474 (559)
T PTZ00317 397 EEVVKTMAS-NVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTL-NGKTIQPSQGNNLYVFPGVGLGCA 474 (559)
T ss_pred HHHHHHHHh-cCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCccc-CCeeeccCcCcceeeccchhhhhH
Confidence 999999975 999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 504 LSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 504 ~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
+++|++|||+||++||++||+++++++++
T Consensus 475 ~~~a~~Itd~m~~aAA~aLA~~v~~~~l~ 503 (559)
T PTZ00317 475 IAQPSYIPDEMLIAAAASLATLVSEEDLR 503 (559)
T ss_pred hhcccCCCHHHHHHHHHHHHhhCCccccC
Confidence 99999999999999999999999998764
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-193 Score=1542.40 Aligned_cols=483 Identities=59% Similarity=0.973 Sum_probs=473.1
Q ss_pred ccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcc
Q 009519 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (533)
Q Consensus 29 ~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~ 108 (533)
..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCC
Q 009519 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (533)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (533)
||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+++++++|||.++|++||||||+|||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CCce
Q 009519 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (533)
Q Consensus 189 lG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P~~~ 267 (533)
||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+|||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHH
Q 009519 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (533)
Q Consensus 268 I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 347 (533)
||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHH
Q 009519 348 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (533)
Q Consensus 348 ~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteev 426 (533)
+++|+|+|||++|||+||++|||+++|++ |+++|++||++.+ +..+|+|||+++|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 54699999999999999999999999976 9999999999853 3478999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhC
Q 009519 427 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506 (533)
Q Consensus 427 v~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~ 506 (533)
||+|++ +|+|||||||||||+++||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||||+++++
T Consensus 420 i~~Ma~-~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 420 LEAMAS-LNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYN-GKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHHh-cCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeC-CeeecCccccceeeccchhhHHHhcC
Confidence 999975 9999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 507 ARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 507 a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|++|||+||++||++||+++++++++
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~~~~l~ 523 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVTEEELA 523 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCCcccCC
Confidence 99999999999999999999998765
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-110 Score=868.95 Aligned_cols=366 Identities=36% Similarity=0.523 Sum_probs=321.5
Q ss_pred ccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhc
Q 009519 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (533)
Q Consensus 65 v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~ 144 (533)
|+|+| |.+|.+.++..+.. ..|++|.|| ++|+.+||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998873 489999999 99999999999999999999999999999999999766
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-CcccccchhhhhHhhhcCCCCCceecEEeecc
Q 009519 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (533)
Q Consensus 145 r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~-~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvG 223 (533)
++++ ++.. ++++|||||||||||||||||+ +||||||||++|||+||||| +||||||+|
T Consensus 67 ~~~~-------------~yt~----~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY-------------SYTA----RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh-------------hcCC----CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 6654 3333 5579999999999999999995 99999999999999999999 999999999
Q ss_pred CCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhc--cCceeccCcchhHH
Q 009519 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRK--RFCMFNDDIQGTAG 301 (533)
Q Consensus 224 TnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~--~~~~FnDDiQGTaa 301 (533)
|||+ +++||+++...||+..+ ||++.|+||.+++++|. .||||||||||||+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginL--edi~ap~cf~ie~~lr~~~~IPvFhDDqqGTai 180 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINL--EDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAI 180 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcce--eecccchhhHHHHHHhhcCCCCcccccccHHHH
Confidence 9975 56666666666665555 55555666666665554 59999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC--CCh
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDP 379 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~--l~~ 379 (533)
|+||||+||+|++|++|+| +||||+|||+||+||+++|..+|+ ++ +|||+|||+|+|+++|++ +++
T Consensus 181 v~lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~ 248 (432)
T COG0281 181 VTLAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQ 248 (432)
T ss_pred HHHHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccch
Confidence 9999999999999999999 999999999999999999999866 22 799999999999999976 677
Q ss_pred hhhcccc-ccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh
Q 009519 380 AAAPFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF 458 (533)
Q Consensus 380 ~k~~~A~-~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~ 458 (533)
+|..+|. ...+| .+ .+++. +||||||+|++ |+||+|+||+|+ ++||||||||||+ |++||||.
T Consensus 249 ~k~~~a~~~~~~~------~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma----~~PiIfalaNP~p--Ei~Pe~a~ 312 (432)
T COG0281 249 KKYAKAIEDTGER------TL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA----KHPIIFALANPTP--EITPEDAK 312 (432)
T ss_pred HHHHHHHhhhccc------cc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc----cCCEEeecCCCCc--cCCHHHHh
Confidence 7777775 44433 21 34554 59999999997 999999999996 4699999999997 99999999
Q ss_pred cccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 459 KHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 459 ~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
+|++|++|+||| |+++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++
T Consensus 313 ~~~~~aaivaTG-----------rsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~ 372 (432)
T COG0281 313 EWGDGAAIVATG-----------RSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREE 372 (432)
T ss_pred hcCCCCEEEEeC-----------CCCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhcccc
Confidence 999999999996 777888999999999999999999999999999999999999997753
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-105 Score=889.91 Aligned_cols=329 Identities=30% Similarity=0.443 Sum_probs=305.0
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~G 193 (533)
-++.+++.+| |.++|||||+++|+++. +|++.+++++. +++.++|||||||||||||+|++|
T Consensus 31 ~~~~~~~~~d-l~~~ytpgv~~~~~~i~-------------~~~~~~~~~t~----~~n~v~vvtdg~~vLGlGd~G~~~ 92 (763)
T PRK12862 31 PTKPLANQRD-LALAYSPGVAAPCLEIA-------------ADPANAARYTS----RGNLVAVVSNGTAVLGLGNIGPLA 92 (763)
T ss_pred ecCCCCCHHH-ceeeeCCchHHHHHHHH-------------hChHhhhhccc----CCcEEEEEechhhhccccccCccc
Confidence 5667788877 79999999999999987 67777765543 778999999999999999999975
Q ss_pred -ccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeee
Q 009519 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (533)
Q Consensus 194 -m~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~E 271 (533)
|||||||++|||+||||| +||+||||+ || ||||++|+.+||++ +||||
T Consensus 93 ~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~f~~i~~E 142 (763)
T PRK12862 93 SKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPTFGGINLE 142 (763)
T ss_pred ccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCCcceeeee
Confidence 999999999999999999 555566665 65 99999999999995 99999
Q ss_pred cCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 009519 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (533)
Q Consensus 272 Df~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (533)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|+.
T Consensus 143 D~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 214 (763)
T PRK12862 143 DIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLLVS----- 214 (763)
T ss_pred cccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHHHH-----
Confidence 99999999999999998 89999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 350 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.|+++ +||||||++|||+++|++ |+++|++||++++ ..+|+|||++ ||||||+|+ +|+||+|||+
T Consensus 215 ~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~ 280 (763)
T PRK12862 215 LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGVLKPEMVK 280 (763)
T ss_pred cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 48874 799999999999999975 9999999999853 2689999999 999999999 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCc
Q 009519 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (533)
Q Consensus 429 ~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 508 (533)
+|+ +|||||||||||| ||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||+
T Consensus 281 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~atG-----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~ 342 (763)
T PRK12862 281 KMA----PRPLIFALANPTP--EILPEEARAVRPD-AIIATG-----------RSDYPNQVNNVLCFPYIFRGALDVGAT 342 (763)
T ss_pred Hhc----cCCEEEeCCCCcc--cCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeeccchhhhHHhcCCe
Confidence 995 8999999999997 9999999999998 999995 999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhcccCCCC
Q 009519 509 FITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 509 ~Itd~M~~aAA~alA~~v~~~~ 530 (533)
+|||+|+++||++||++++++.
T Consensus 343 ~i~~~m~~aaa~ala~~~~~~~ 364 (763)
T PRK12862 343 TINEEMKIAAVRAIAELAREEQ 364 (763)
T ss_pred eCCHHHHHHHHHHHHhcccccC
Confidence 9999999999999999998874
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-104 Score=881.08 Aligned_cols=328 Identities=31% Similarity=0.471 Sum_probs=302.7
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC-
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ- 192 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~- 192 (533)
-++.+.+.+| |+++|||||+++|+++ +++|+++| ++.+| ++.++|||||||||||||+|++
T Consensus 23 ~~~~~~~~~d-l~~~Ytpgv~~~c~~i---~~~~~~~~-~~t~~-------------~n~v~vvtdg~~vLGlGd~G~~a 84 (752)
T PRK07232 23 PTKPLATQRD-LSLAYSPGVAAPCLEI---AKDPADAY-KYTAR-------------GNLVAVISNGTAVLGLGNIGALA 84 (752)
T ss_pred eccccCChhh-cceecCCchHHHHHHH---HhChhhcc-ccccC-------------CcEEEEEccchhhcccccccccc
Confidence 4566777777 8999999999999955 46777777 55554 4679999999999999999996
Q ss_pred cccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeee
Q 009519 193 GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (533)
Q Consensus 193 Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~E 271 (533)
||||||||++|||+||||| ++|+||||+ | +||||++|+.+||++ +||||
T Consensus 85 ~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~~g~i~~E 134 (752)
T PRK07232 85 SKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPTFGGINLE 134 (752)
T ss_pred CccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCCccEEeee
Confidence 9999999999999999999 455556664 4 899999999999998 99999
Q ss_pred cCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 009519 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (533)
Q Consensus 272 Df~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (533)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 135 D~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 206 (752)
T PRK07232 135 DIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLLVA----- 206 (752)
T ss_pred ecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHHHH-----
Confidence 99999999999999998 79999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 350 AGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.|++ ++|||+||++|||+++| ++|+++|++||++++ ..+|+|+|++ ||||||+|+ +|+||+|||+
T Consensus 207 ~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~ 272 (752)
T PRK07232 207 LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGVLTPEMVK 272 (752)
T ss_pred cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 4777 57999999999999999 579999999999843 3589999999 999999998 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCc
Q 009519 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (533)
Q Consensus 429 ~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 508 (533)
+|+ +|||||||||||| ||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||+
T Consensus 273 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~atG-----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~ 334 (752)
T PRK07232 273 SMA----DNPIIFALANPDP--EITPEEAKAVRPD-AIIATG-----------RSDYPNQVNNVLCFPYIFRGALDVGAT 334 (752)
T ss_pred Hhc----cCCEEEecCCCCc--cCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeecchhhHHHHHcCCc
Confidence 995 6999999999998 9999999999999 999995 999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhcccCCC
Q 009519 509 FITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 509 ~Itd~M~~aAA~alA~~v~~~ 529 (533)
+|||+|+++||++||++++++
T Consensus 335 ~i~~~m~~aaa~ala~~~~~~ 355 (752)
T PRK07232 335 TINEEMKLAAVRAIAELAREE 355 (752)
T ss_pred cCCHHHHHHHHHHHHhhcccc
Confidence 999999999999999999875
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-104 Score=879.30 Aligned_cols=330 Identities=30% Similarity=0.458 Sum_probs=302.2
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~G 193 (533)
-++.+.+.+| |+++|||||+++|+++. +|++.++++.. +++.++|||||||||||||+|++|
T Consensus 27 ~~~~~~~~~d-l~l~YtPgVa~~c~~i~-------------~~p~~~~~~t~----r~n~v~VvtdG~~vLGLGdiG~~a 88 (764)
T PRK12861 27 ASKPLVTQRD-LALAYTPGVASACEEIA-------------ADPLNAFRFTS----RGNLVGVITNGTAVLGLGNIGALA 88 (764)
T ss_pred eccccCChHH-ceeecCCchHHHHHHHH-------------hChHhhhhhhc----cCcEEEEEecchhhccCCCcCccc
Confidence 5567778877 79999999999999965 45555543333 567899999999999999999965
Q ss_pred -ccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeec
Q 009519 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFED 272 (533)
Q Consensus 194 -m~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~ED 272 (533)
|||||||++|||+||||| +||+|||| +|| |+|| |||++++.+||. |||||
T Consensus 89 ~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~--i~lED 139 (764)
T PRK12861 89 SKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG--INLED 139 (764)
T ss_pred ccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC--ceeee
Confidence 999999999999999999 67777777 787 7888 999999999988 99999
Q ss_pred CCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHc
Q 009519 273 FQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMA 350 (533)
Q Consensus 273 f~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~ 350 (533)
|++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|++ .
T Consensus 140 ~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~~-----~ 211 (764)
T PRK12861 140 IKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLVD-----L 211 (764)
T ss_pred ccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHHH-----c
Confidence 9999999999999995 99999999999999999999999999999999 999999999999999999865 5
Q ss_pred CCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHH
Q 009519 351 GNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (533)
Q Consensus 351 Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~ 429 (533)
|++++ |||+||++|||+++|++ |+++|++||++++ ..+|+|||++ +|||||+|+ +|+||+|||++
T Consensus 212 G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~ft~e~v~~ 277 (764)
T PRK12861 212 GLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKA 277 (764)
T ss_pred CCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHH
Confidence 88863 99999999999999975 9999999999853 2689999999 899999998 99999999999
Q ss_pred hhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcc
Q 009519 430 MRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARF 509 (533)
Q Consensus 430 Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~ 509 (533)
|+ +|||||||||||| ||+||||++ |+|++|||| ||+++|||+||+|+|||||||++++||++
T Consensus 278 Ma----~~PIIFaLsNPtp--E~~pe~a~~-~~g~aivaT-----------Grs~~pnQ~NN~l~FPgi~~Gal~~~a~~ 339 (764)
T PRK12861 278 MA----ARPLILALANPTP--EIFPELAHA-TRDDVVIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGATT 339 (764)
T ss_pred hc----cCCEEEECCCCCc--cCCHHHHHh-cCCCEEEEe-----------CCcCCCCccceeeecchhhHHHHHcCCcc
Confidence 95 5999999999998 999999987 999999999 59999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCC
Q 009519 510 ITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 510 Itd~M~~aAA~alA~~v~~~~ 530 (533)
|||+|+++||++||++++++.
T Consensus 340 I~~~M~~aAa~alA~~~~~~~ 360 (764)
T PRK12861 340 ITREMEIAAVHAIAGLAEEEQ 360 (764)
T ss_pred CCHHHHHHHHHHHHhhCCccc
Confidence 999999999999999999875
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-87 Score=666.33 Aligned_cols=227 Identities=48% Similarity=0.758 Sum_probs=202.5
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|++||++||||||++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
+|+++|++|||+.+++. ...+|+|+|+++|||||||+|+++|+|||||||+|++ +|||||||||||||+++|||||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~-~~erPIIF~LSNPt~~aE~~pe 152 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK-HNERPIIFPLSNPTPKAECTPE 152 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH-HSSSEEEEE-SSSCGGSSS-HH
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc-cCCCCEEEECCCCCCcccCCHH
Confidence 99999999999987642 2379999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 456 ~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
|||+||+|+|||||||||+||+| +||+++||||||+|||||||||++++||++|||+||++||++||++++++++
T Consensus 153 da~~~t~g~ai~AtGSpf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~ 227 (255)
T PF03949_consen 153 DAYEWTDGRAIFATGSPFPPVEY-NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEEL 227 (255)
T ss_dssp HHHHTTTSEEEEEESS----EEE-TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHH
T ss_pred HHHhhCCceEEEecCCccCCeee-CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999 5999999999999999999999999999999999999999999999998743
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=654.30 Aligned_cols=227 Identities=53% Similarity=0.839 Sum_probs=218.8
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
+|+++|++||++.++ .+.++|+|+|+++|||||||+|+++|+||+||||+|++ +|+|||||||||||++||||||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~~E~~pe 151 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK-SNERPIIFALSNPTSKAECTAE 151 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCCCCEEEECCCcCCccccCHH
Confidence 899999999998653 24579999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 456 ~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|||+||+||+||||||||+||+|+ ||+++||||||+|+|||||||+++++|++|||+||++||++||+++++++++
T Consensus 152 ~a~~~t~G~ai~ATGsPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~ 227 (279)
T cd05312 152 DAYKWTDGRALFASGSPFPPVEYN-GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELA 227 (279)
T ss_pred HHHHhhcCCEEEEeCCCCCCeeeC-CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccC
Confidence 999999999999999999999995 9999999999999999999999999999999999999999999999998765
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-84 Score=645.25 Aligned_cols=225 Identities=39% Similarity=0.646 Sum_probs=216.3
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||+||++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 7999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhc---cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccC
Q 009519 376 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (533)
Q Consensus 376 ~l~~~k~~---~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~ 452 (533)
+|+++|++ |+++.+ +.++|+|+|+.+|||||||+|+++|+|||||||+|++ +|+|||||||||||++|||
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE~ 149 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAE-INERPVIFALSNPTSKAEC 149 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhh-cCCCCEEEECCCcCCcccc
Confidence 89999999 777642 3579999999999999999999999999999999975 9999999999999999999
Q ss_pred CHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 453 TAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 453 tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
||||||+||+|||||||||||+||+|+ |++++|+||||+|+|||||||+++++|++|||+||++||++||+++++++++
T Consensus 150 tpe~a~~~t~G~ai~AtGspf~pv~~~-g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~ 228 (254)
T cd00762 150 TAEEAYTATEGRAIFASGSPFHPVELN-GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLK 228 (254)
T ss_pred CHHHHHhhcCCCEEEEECCCCCCcccC-CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCC
Confidence 999999999999999999999999994 9999999999999999999999999999999999999999999999988754
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-83 Score=609.75 Aligned_cols=181 Identities=61% Similarity=1.125 Sum_probs=163.0
Q ss_pred hcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 009519 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (533)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILG 185 (533)
|++||+|||+++.+|++|+|||+||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-C
Q 009519 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (533)
Q Consensus 186 LGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P 264 (533)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CceeeeecCCCchHHHHHHHHh
Q 009519 265 KAIVQFEDFQMKWAFETLERYR 286 (533)
Q Consensus 265 ~~~I~~EDf~~~~af~iL~ryr 286 (533)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=395.52 Aligned_cols=200 Identities=33% Similarity=0.487 Sum_probs=181.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|++||+++|+|..|+++++ +||||+|||+||.|||++|.+ .|++ +++||++|++|+++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 7999999999999999999999999 999999999999999999975 4765 579999999999999984
Q ss_pred -CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCH
Q 009519 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 454 (533)
Q Consensus 376 -~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tp 454 (533)
+|.++|++|++..+. .. ...+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||++ ||++
T Consensus 69 ~~L~~~~~~la~~~~~-~~--~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~----~~~ivf~lsnP~~--e~~~ 136 (226)
T cd05311 69 DDLNPDKNEIAKETNP-EK--TGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA----KDPIVFALANPVP--EIWP 136 (226)
T ss_pred hhhhHHHHHHHHHhcc-Cc--ccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC----CCCEEEEeCCCCC--cCCH
Confidence 599999999987532 11 11479899987 999999999 8999999999994 7999999999997 9999
Q ss_pred HHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 455 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 455 e~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
++|++| |..||||| +++.|+|+||+|||||||||+++++|++|||+||++||++||+++++++++
T Consensus 137 ~~A~~~--ga~i~a~G-----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~ 201 (226)
T cd05311 137 EEAKEA--GADIVATG-----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLG 201 (226)
T ss_pred HHHHHc--CCcEEEeC-----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccC
Confidence 999999 55599985 899999999999999999999999999999999999999999999998764
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-08 Score=82.13 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
+||.++++++..+.+..+.+++. .+++|+|+|.+|.+++..+.+... ++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~~~-----------~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADEGG-----------KKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcC-----------
Confidence 68999999999999999988888 999999999999999999977421 57898888
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
|+||++++.++.|+++.++.| ++.|+||.++
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 999999999999998856655 5899999875
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00019 Score=77.77 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=106.7
Q ss_pred cCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHH---------------------HHHHhc-------cCcee
Q 009519 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFET---------------------LERYRK-------RFCMF 292 (533)
Q Consensus 241 ~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~i---------------------L~ryr~-------~~~~F 292 (533)
+..+-+||+..+++.+ ...-|+.+| |.+..-...+ ..||+. .+|+|
T Consensus 104 ~~~~~~ey~~~~~~~l---~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 104 KGETLEEYWECIERAL---DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCCHHHHHHHHHHHh---cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 3446688888777765 122366665 5555554433 245543 38999
Q ss_pred c----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE
Q 009519 293 N----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF 362 (533)
Q Consensus 293 n----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~ 362 (533)
| |-..||+--++-|+.. .++..+.. .+++|+|+|..|.++|..+... |. +++
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga-------~Vi 239 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA-------RVI 239 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-------EEE
Confidence 8 7789999877666654 34666677 9999999999999999888754 32 688
Q ss_pred EEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe
Q 009519 363 LLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 363 lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa 442 (533)
++|.+- .| ...|.... ....++.++++. .|++|-+++..++|+.+.++.|. +.-|++-
T Consensus 240 V~d~dp----~r-------a~~A~~~G-----~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK----~GailiN 297 (425)
T PRK05476 240 VTEVDP----IC-------ALQAAMDG-----FRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK----DGAILAN 297 (425)
T ss_pred EEcCCc----hh-------hHHHHhcC-----CEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC----CCCEEEE
Confidence 887631 11 11111110 012358888886 89999988777889999999993 3456665
Q ss_pred cCCCCC
Q 009519 443 MSNPTM 448 (533)
Q Consensus 443 LSNPt~ 448 (533)
.+.+..
T Consensus 298 vG~~d~ 303 (425)
T PRK05476 298 IGHFDN 303 (425)
T ss_pred cCCCCC
Confidence 555543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=71.80 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=94.3
Q ss_pred cCceec----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|+|+ |...||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga----- 226 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA----- 226 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 478885 7789999998877765 56666777 9999999999999999887654 32
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+++++|.+ +.+..+|+... ....++.|+++. .|++|-+++.+++|+++.++.|. +.
T Consensus 227 --~ViV~d~d-----------~~R~~~A~~~G-----~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk----~G 282 (413)
T cd00401 227 --RVIVTEVD-----------PICALQAAMEG-----YEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK----DG 282 (413)
T ss_pred --EEEEEECC-----------hhhHHHHHhcC-----CEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 57777752 23333444311 012346788876 89999999888899999999883 45
Q ss_pred CeEEecCCCCCcccCCHHHHhc
Q 009519 438 PAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~ 459 (533)
-+|.-.+.+. .|+.+.+...
T Consensus 283 gilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 283 AIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred cEEEEeCCCC--CccCHHHHHh
Confidence 6776677663 3888887665
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0062 Score=67.02 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=83.1
Q ss_pred CceeccCcchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 009519 289 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~-------LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i 361 (533)
+||+|=+---|-.+. ++.+-..+|.++..+.. .+++|+|.|..|.++|+.+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 799985554444432 44445556777877777 9999999999999999998754 32 57
Q ss_pred EEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
+++|++-. + ...|... + ....++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.
T Consensus 281 iV~e~dp~----~-------a~~A~~~----G-~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK----pGAiLI 338 (476)
T PTZ00075 281 VVTEIDPI----C-------ALQAAME----G-YQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK----NNAIVG 338 (476)
T ss_pred EEEeCCch----h-------HHHHHhc----C-ceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC----CCcEEE
Confidence 77766311 1 0001110 0 012468899887 99999888778999999999994 566777
Q ss_pred ecCCCC
Q 009519 442 AMSNPT 447 (533)
Q Consensus 442 aLSNPt 447 (533)
-.+...
T Consensus 339 NvGr~d 344 (476)
T PTZ00075 339 NIGHFD 344 (476)
T ss_pred EcCCCc
Confidence 666664
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0023 Score=69.03 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=88.9
Q ss_pred cCceec----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|+|+ |.-.||+--++-+++ |.++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~G---k~VvViG~G~IG~~vA~~ak~~-----Ga----- 219 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAG---KTVVVAGYGWCGKGIAMRARGM-----GA----- 219 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCc---CEEEEECCCHHHHHHHHHHhhC-----cC-----
Confidence 379997 778999987776655 456666777 9999999999999999987754 32
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+++++|.+- .+...|+.. + ....++.|+++. .|++|-+++..++++++.++.|. +.
T Consensus 220 --~ViV~d~dp-----------~r~~~A~~~----G-~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK----~G 275 (406)
T TIGR00936 220 --RVIVTEVDP-----------IRALEAAMD----G-FRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK----DG 275 (406)
T ss_pred --EEEEEeCCh-----------hhHHHHHhc----C-CEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 688887631 111122211 0 012357888876 89999888777889988888883 45
Q ss_pred CeEEecCCCCCcccCCHHHHh
Q 009519 438 PAIFAMSNPTMNAECTAADAF 458 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~ 458 (533)
-||.-.+.... |+.-++..
T Consensus 276 ailiN~G~~~~--eId~~aL~ 294 (406)
T TIGR00936 276 AIVANIGHFDV--EIDVKALE 294 (406)
T ss_pred cEEEEECCCCc--eeCHHHHH
Confidence 67776776654 66655443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0029 Score=69.53 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=93.6
Q ss_pred cCceec----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|++| |-..||+--++-|++ |.|+..+.. .+++|+|.|..|.++|..+... |.
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga----- 278 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA----- 278 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 378776 557899888888877 457776777 9999999999999999998643 43
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+|+++|.+. .+...|.... ....++.|+++. .|++|=+++..++++++.++.|. +.
T Consensus 279 --~VIV~e~dp-----------~r~~eA~~~G-----~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK----~G 334 (477)
T PLN02494 279 --RVIVTEIDP-----------ICALQALMEG-----YQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK----NN 334 (477)
T ss_pred --EEEEEeCCc-----------hhhHHHHhcC-----CeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC----CC
Confidence 588777631 1111221110 011358888877 89999877767888999999993 57
Q ss_pred CeEEecCCCCCcccCCHHHHhcc
Q 009519 438 PAIFAMSNPTMNAECTAADAFKH 460 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~w 460 (533)
-++.-.+.+.. |+.-+...++
T Consensus 335 AiLiNvGr~~~--eID~~aL~~~ 355 (477)
T PLN02494 335 AIVCNIGHFDN--EIDMLGLETY 355 (477)
T ss_pred CEEEEcCCCCC--ccCHHHHhhc
Confidence 78888888765 7777666554
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0065 Score=60.23 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
||-=+..++-.+++..+.+|+. .||+|.|.|..|.++|++|.+. |. +-+.+.|++|-+++. .|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 4444566677788888877777 9999999999999999999874 33 578899999998887 565
Q ss_pred hhh-hccccccCCcCCcc--CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCH
Q 009519 379 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (533)
Q Consensus 379 ~~k-~~~A~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tp 454 (533)
..+ ..+.+........+ +..+= +.+..++.||||=++. .+.+|++..+.+ .-++|..-+| |+.. .+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~DVlipaA~-~~~i~~~~a~~l-----~a~~V~e~AN~p~t~---~a 135 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFPG-EAILGLDVDIFAPCAL-GNVIDLENAKKL-----KAKVVAEGANNPTTD---EA 135 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccCc-ccceeccccEEeeccc-cCccChhhHhhc-----CccEEEeCCCCCCCH---HH
Confidence 432 22222111000000 01111 2344557899997775 799999999998 3679998888 8872 45
Q ss_pred HHHhcccCC
Q 009519 455 ADAFKHAGE 463 (533)
Q Consensus 455 e~A~~wt~G 463 (533)
++.++- .|
T Consensus 136 ~~~L~~-~G 143 (217)
T cd05211 136 LRILHE-RG 143 (217)
T ss_pred HHHHHH-CC
Confidence 666653 45
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0079 Score=64.74 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.+.-+|..+++--|.+..+. +.+ .+++|+|+|..|..++..|... |. .+|+++|+.. .+
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r-- 216 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER-- 216 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH--
Confidence 55666777777666666553 555 8999999999999999888653 43 4788887731 11
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCC-eEEecCCCCCcccCCH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKP-AIFAMSNPTMNAECTA 454 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erP-IIFaLSNPt~~aE~tp 454 (533)
...+|+.-.. .. -...++.+++.. .|++|-+++.+ ..+++++++.+.. ...+| +|+-+++|-. +.|
T Consensus 217 ----a~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~-~~~~~~~viDla~Prd---id~ 284 (417)
T TIGR01035 217 ----AEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR-ERTRPLFIIDIAVPRD---VDP 284 (417)
T ss_pred ----HHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh-cCCCCeEEEEeCCCCC---CCh
Confidence 1223322100 00 012357888876 89999887644 5799999998742 11256 8899999984 555
Q ss_pred H
Q 009519 455 A 455 (533)
Q Consensus 455 e 455 (533)
+
T Consensus 285 ~ 285 (417)
T TIGR01035 285 A 285 (417)
T ss_pred h
Confidence 4
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.027 Score=54.02 Aligned_cols=143 Identities=20% Similarity=0.263 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.||+--++-|++. .|+..|.- .++|++|-|--|-|+|+.+..... ++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHHh---cCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 5777777777774 67888877 999999999999999999987644 77777652
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 456 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~ 456 (533)
+.+.-=|.- +| -+..+++|+++. +|++|-+++..++.+.|.++.|. +.-|+.-..-= ..|+.-+.
T Consensus 56 --Pi~alqA~~----dG-f~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk----dgail~n~Gh~--d~Eid~~~ 120 (162)
T PF00670_consen 56 --PIRALQAAM----DG-FEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK----DGAILANAGHF--DVEIDVDA 120 (162)
T ss_dssp --HHHHHHHHH----TT--EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSSS--TTSBTHHH
T ss_pred --hHHHHHhhh----cC-cEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc----CCeEEeccCcC--ceeEeecc
Confidence 333222221 11 123469999987 99999999888899999999993 56666655432 33888877
Q ss_pred HhcccCCcEEEecCCCCcceecCCCee
Q 009519 457 AFKHAGENIVFASGSPFENVDLGNGKI 483 (533)
Q Consensus 457 A~~wt~Grai~AtGSPf~pv~~~~G~~ 483 (533)
..+. +.-..-..+.-..++++|||.
T Consensus 121 L~~~--~~~~~~v~~~v~~y~l~~G~~ 145 (162)
T PF00670_consen 121 LEAN--AVEREEVRPQVDRYTLPDGRR 145 (162)
T ss_dssp HHTC--TSEEEEEETTEEEEEETTSEE
T ss_pred cccc--CcEEEEcCCCeeEEEeCCCCE
Confidence 6554 222222232333344555664
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0093 Score=61.60 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=87.3
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|.+..|. +.. .||+|+|+|..|..+++.+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 57888888888775444 33455666666666655554 566 8999999999999998888652 32
Q ss_pred hhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCC
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS 435 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~ 435 (533)
++|+++|+. .+ ....+|+.-.... ....++.++++. +|++|-+++.+.. +++++.+.+...
T Consensus 203 ---~~V~v~~r~----~~------ra~~la~~~g~~~--~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~ 263 (311)
T cd05213 203 ---AEITIANRT----YE------RAEELAKELGGNA--VPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRS 263 (311)
T ss_pred ---CEEEEEeCC----HH------HHHHHHHHcCCeE--EeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCC
Confidence 579999873 11 1122333211000 011357788877 8999998875555 676666533121
Q ss_pred -CCCeEEecCCCCC
Q 009519 436 -VKPAIFAMSNPTM 448 (533)
Q Consensus 436 -erPIIFaLSNPt~ 448 (533)
..-+|+=||||-.
T Consensus 264 ~~~~~viDlavPrd 277 (311)
T cd05213 264 GKPRLIVDLAVPRD 277 (311)
T ss_pred CCCeEEEEeCCCCC
Confidence 2347778999975
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.063 Score=59.00 Aligned_cols=190 Identities=19% Similarity=0.176 Sum_probs=129.2
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhcc---C-ceec----------cCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR---F-CMFN----------DDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---~-~~Fn----------DDiQGTaaV~LA 305 (533)
.+..|-..|...||..+.+.. |..-|-=.|++..- ---+.+.|+.- . .|+- +--..||-=++.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~ 222 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVY 222 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHH
Confidence 566777899999999998766 78888888888522 22356666542 1 2211 112237777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhhh--
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-- 382 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k~-- 382 (533)
++-.+++..+.+|+. .||+|-|.|..|...|+.|.+... +++ +.|++|-|++.. .|+..+.
T Consensus 223 ~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~Ga------------kVVavSD~~G~iy~~~-Gld~~~l~~ 286 (454)
T PTZ00079 223 FVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQLGA------------KVLTMSDSDGYIHEPN-GFTKEKLAY 286 (454)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHCCC------------EEEEEEcCCCcEECCC-CCCHHHHHH
Confidence 888999999999988 999999999999999999976533 566 999999999875 4544332
Q ss_pred -------------ccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 383 -------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 383 -------------~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
.|+.... + ....+-.+ +-.++.||||=+.. .+.+|++-++.+.+ +.-.+|.=-+| |+.
T Consensus 287 l~~~k~~~~g~i~~~~~~~~---~-a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~--~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 287 LMDLKNVKRGRLKEYAKHSS---T-AKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK--NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHHhhcCCcHHhhhhccC---C-cEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH--cCCeEEEecCCCCCC
Confidence 1211000 0 00001111 22367999998776 69999999999843 45679998998 776
Q ss_pred cccCCHHHHhc
Q 009519 449 NAECTAADAFK 459 (533)
Q Consensus 449 ~aE~tpe~A~~ 459 (533)
. .+++.++
T Consensus 359 ~---eA~~~L~ 366 (454)
T PTZ00079 359 I---EATHLFK 366 (454)
T ss_pred H---HHHHHHH
Confidence 3 3455554
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.07 Score=57.93 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=127.6
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhcc----------Ccee----ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~~----------~~~F----nDDiQGTaaV~LA 305 (533)
.+..|-..+...|+.++.... |..-|-=+|++..-. --+.++|+.. -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 556788889999999998876 555566678876432 2356777651 1221 2333458877788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhhh-c
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 383 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k~-~ 383 (533)
++-.+++..|.+|+. .||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|++.. .|+..+. .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888889888888888 9999999999999999988664 42 566 899999998865 3442221 1
Q ss_pred cccccCCcCCc--cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhc
Q 009519 384 FAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 459 (533)
Q Consensus 384 ~A~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~ 459 (533)
+.+......+. ....+-.+++. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+. .| +++.++
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~t-~e--a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPTD-PE--ADEILR 324 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCCC-HH--HHHHHH
Confidence 11110000000 01122334333 3799999766 4799999999987 4679999999 763 23 455555
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=55.96 Aligned_cols=86 Identities=15% Similarity=0.308 Sum_probs=65.1
Q ss_pred HHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccccc
Q 009519 310 TVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388 (533)
Q Consensus 310 Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~ 388 (533)
.++-...+|++ .|++|+|+|. .|..+|+.|... | .++++++++-
T Consensus 34 l~~~~~~~l~g---k~vlViG~G~~~G~~~a~~L~~~-----g-------~~V~v~~r~~-------------------- 78 (168)
T cd01080 34 LLKRYGIDLAG---KKVVVVGRSNIVGKPLAALLLNR-----N-------ATVTVCHSKT-------------------- 78 (168)
T ss_pred HHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHhhC-----C-------CEEEEEECCc--------------------
Confidence 33444455666 9999999997 599899888763 3 1588888630
Q ss_pred CCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 389 GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 389 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+|.+.++. .|++|..++.+..|++++++ +.-+|+=++.|-.
T Consensus 79 ---------~~l~~~l~~--aDiVIsat~~~~ii~~~~~~-------~~~viIDla~prd 120 (168)
T cd01080 79 ---------KNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINRV 120 (168)
T ss_pred ---------hhHHHHHhh--CCEEEEcCCCCceecHHHcc-------CCeEEEEccCCCc
Confidence 137778888 99999999988899999654 3568899999874
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=62.29 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
|+++...++--+.+..|..+++ .+++|.|| |+.|..++++|... .|. +++++++++ . ..+
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~--~rl 194 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----Q--ERL 194 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----H--HHH
Confidence 7788888888888888988888 99999999 89999999999752 232 478888763 1 123
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCC--CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
...+.++... ...+|.+++.. +|++|=+++.+.. ++++.++ +.-+|+=++.|-.
T Consensus 195 ~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~-------~~~~viDiAvPRD 250 (340)
T PRK14982 195 QELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVEIDPETLK-------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC-------CCeEEEEecCCCC
Confidence 2223333211 12458888887 9999987776433 6775442 3346666999976
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=63.36 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
..+|+.+|+--|.+..+ ++.. .+++|+|+|..|..++..+... |. ++|+++|+.. .|
T Consensus 162 ~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~r~~----~r---- 218 (423)
T PRK00045 162 AVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAEK-----GV------RKITVANRTL----ER---- 218 (423)
T ss_pred CcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHHC-----CC------CeEEEEeCCH----HH----
Confidence 45666666554444444 4555 8999999999999999888643 43 5799887731 11
Q ss_pred hhhhccccccC-CcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcC-CCCCeEEecCCCCC
Q 009519 379 PAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD-SVKPAIFAMSNPTM 448 (533)
Q Consensus 379 ~~k~~~A~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~-~erPIIFaLSNPt~ 448 (533)
...+++.-. .. ....++.+++.. +|++|-+++.+ ..+++++++.+...- ....+|+=||+|-.
T Consensus 219 --a~~la~~~g~~~---~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 219 --AEELAEEFGGEA---IPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred --HHHHHHHcCCcE---eeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 112332210 00 012346777776 89999987755 578999999874211 12358889999984
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0021 Score=58.47 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=65.7
Q ss_pred CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCC
Q 009519 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.+|.+.|++|+|||.+|-+++..|... |. ++|+++++. .+| .......| ....+. .....
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~--~~~~~~-~~~~~ 67 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEF--GGVNIE-AIPLE 67 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHH--TGCSEE-EEEGG
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHc--Cccccc-eeeHH
Confidence 344459999999999999998888764 44 589999872 222 22222222 100000 01234
Q ss_pred CHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.+.++. .|++|-+++.+ -.++++.++.... ...+||=||+|-.
T Consensus 68 ~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~---~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 68 DLEEALQE--ADIVINATPSGMPIITEEMLKKASK---KLRLVIDLAVPRD 113 (135)
T ss_dssp GHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH---HCSEEEES-SS-S
T ss_pred HHHHHHhh--CCeEEEecCCCCcccCHHHHHHHHh---hhhceeccccCCC
Confidence 57777777 89999988755 3789988876521 1249999999976
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.023 Score=58.55 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (533)
-+++..+++..+..+.. .|++|+|+|.+|..++..+... | -+++++|++- .+..
T Consensus 136 egav~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~-----------~~~~ 189 (296)
T PRK08306 136 EGAIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS-----------AHLA 189 (296)
T ss_pred HHHHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH-----------HHHH
Confidence 33566677777777777 9999999999999999888753 3 2789888851 1111
Q ss_pred cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC
Q 009519 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE 463 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G 463 (533)
.++...- . .....+|.+.++. .|++|-++ ....+++++++.|. +..+|+=++...- .|..+.|.+ .|
T Consensus 190 ~~~~~G~-~-~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~----~g~vIIDla~~pg--gtd~~~a~~--~G 256 (296)
T PRK08306 190 RITEMGL-S-PFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP----PEALIIDLASKPG--GTDFEYAEK--RG 256 (296)
T ss_pred HHHHcCC-e-eecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC----CCcEEEEEccCCC--CcCeeehhh--CC
Confidence 2221100 0 0012357788876 89999865 35778999999994 5677775654333 355544433 34
Q ss_pred c-EEEecCCC
Q 009519 464 N-IVFASGSP 472 (533)
Q Consensus 464 r-ai~AtGSP 472 (533)
. ++.++|-|
T Consensus 257 v~~~~~~~lp 266 (296)
T PRK08306 257 IKALLAPGLP 266 (296)
T ss_pred eEEEEECCCC
Confidence 3 34456533
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=59.49 Aligned_cols=109 Identities=17% Similarity=0.289 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
..+-.|-.|++..++..+.+++. ++++++|+|- +|..+|.+|... | | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~G---k~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~--------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAG---KHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR--------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC---------
Confidence 44677779999999999999999 9999999997 999999998653 3 2 68888752
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEec-CCCCC--cc-cC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTM--NA-EC 452 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaL-SNPt~--~a-E~ 452 (533)
..+|.+.+++ +|++|-+.+.++.|+.++++ +.-+|+=. .||.. .. ++
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk-------~gavViDvg~n~~~~~~~GDv 243 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK-------QGAVVVDAGFHPRDGGGVGDI 243 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC-------CCCEEEEEEEeecCCCCcccc
Confidence 0237777776 99999999999999998764 44566554 36631 11 56
Q ss_pred CHHHHhc
Q 009519 453 TAADAFK 459 (533)
Q Consensus 453 tpe~A~~ 459 (533)
.+|++.+
T Consensus 244 d~~~~~~ 250 (283)
T PRK14192 244 ELQGIEE 250 (283)
T ss_pred cHHHhhc
Confidence 6666655
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.14 Score=52.70 Aligned_cols=175 Identities=14% Similarity=0.218 Sum_probs=107.2
Q ss_pred HHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCcee------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceE
Q 009519 253 DEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF------NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKI 326 (533)
Q Consensus 253 defv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~F------nDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~ri 326 (533)
+|+++.+. ...+-+==+.+++-....++ ..+.++ |=-+..+-.++=.++.-+++..+..+.+ .++
T Consensus 84 ~~~l~~~~----~~~~~~~G~~~~~l~~~a~~--~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~g---k~v 154 (287)
T TIGR02853 84 PELLESTK----GHCTIYVGISNPYLEQLAAD--AGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHG---SNV 154 (287)
T ss_pred HHHHHhcC----CCCEEEEecCCHHHHHHHHH--CCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCC---CEE
Confidence 45665555 23333444444443332222 224444 3345666677777777888888888887 999
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcc
Q 009519 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (533)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~ 406 (533)
+|+|+|.+|..+|+.+... |. +++++|++. . .+...+ .+ .... ....+|.+.+++
T Consensus 155 ~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~--~~~~~~-~~--g~~~----~~~~~l~~~l~~ 209 (287)
T TIGR02853 155 MVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A--DLARIT-EM--GLIP----FPLNKLEEKVAE 209 (287)
T ss_pred EEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H--HHHHHH-HC--CCee----ecHHHHHHHhcc
Confidence 9999999999999999754 42 688888741 1 111110 00 0000 012357888876
Q ss_pred cCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhcccCCcEEEecCCC
Q 009519 407 VKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFKHAGENIVFASGSP 472 (533)
Q Consensus 407 vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~wt~Grai~AtGSP 472 (533)
.|++|=.. ..+.++++.++.|. +..+|+=+|. |- ++..+.|.+. .-+++.+-|-|
T Consensus 210 --aDiVint~-P~~ii~~~~l~~~k----~~aliIDlas~Pg---~tdf~~Ak~~-G~~a~~~~glP 265 (287)
T TIGR02853 210 --IDIVINTI-PALVLTADVLSKLP----KHAVIIDLASKPG---GTDFEYAKKR-GIKALLAPGLP 265 (287)
T ss_pred --CCEEEECC-ChHHhCHHHHhcCC----CCeEEEEeCcCCC---CCCHHHHHHC-CCEEEEeCCCC
Confidence 89999654 34678999999883 4678886664 53 5777665553 34677777644
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.23 Score=54.65 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=125.2
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCc--hHHHHHHHHhccC----cee----------ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF----CMF----------NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~~----~~F----------nDDiQGTaaV~LA 305 (533)
.+-.|...+.-.||..+.... |..-|-=+|++.. .---+.+.|+..- -|| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 567788999999999999876 8888888898763 3334677776431 233 2334457877788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccc
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A 385 (533)
++-.+++..|.+|+. +||+|-|.|..|...|+.|.++.. +=+-+.|++|-|++.. .|+..+..|-
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~GA-----------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLELGG-----------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHCCC-----------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 888889988988888 999999999999999999987543 3355699999888654 4555443221
Q ss_pred cc-----cCCcCCc-----cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 009519 386 KD-----PGDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (533)
Q Consensus 386 ~~-----~~~~~~~-----~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt 447 (533)
.. .....+. ....+-.+ +-.++.|+||=+.. .+.+|++.++.+.+..+ -+|.--+| |+
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g~--~~V~EgAN~P~ 347 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANGV--IAVSEGANMPS 347 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcCC--eEEECCCCCCC
Confidence 10 0000000 00011112 11257899996665 79999999999943111 37888888 54
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.16 Score=55.85 Aligned_cols=192 Identities=19% Similarity=0.184 Sum_probs=129.0
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhccC----------cee----ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKRF----------CMF----NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~~----------~~F----nDDiQGTaaV~LA 305 (533)
.+..|-..|...|+.++...+ |..-|-=+|++..- ---+.++|+.-. |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 566788899999999999887 77788888988532 233667877431 211 1233457777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-eccCccccCCCCCChh----
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPA---- 380 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lv-D~~GLi~~~r~~l~~~---- 380 (533)
++..+++..+.+|+. .||+|.|-|..|...|++|.+. |. +|+-+ |++|-|+... .|+..
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~~-----Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQL-----GA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888888888888888 9999999999999999999653 43 55555 9999998865 34322
Q ss_pred -hhc----cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCH
Q 009519 381 -AAP----FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (533)
Q Consensus 381 -k~~----~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tp 454 (533)
|.. +..-... .+ ....+-.+ +..++.||||=+.. .+.+|++-...+. .+.-.||.=-+| |+. .| +
T Consensus 282 ~k~~~~~~l~~~~~~-~~-~~~i~~~~-i~~~d~DVliPaAl-~n~It~~~a~~i~--~~~akiIvEgAN~p~t-~~--A 352 (445)
T PRK09414 282 IKEVRRGRISEYAEE-FG-AEYLEGGS-PWSVPCDIALPCAT-QNELDEEDAKTLI--ANGVKAVAEGANMPST-PE--A 352 (445)
T ss_pred HHHhcCCchhhhhhh-cC-CeecCCcc-ccccCCcEEEecCC-cCcCCHHHHHHHH--HcCCeEEEcCCCCCCC-HH--H
Confidence 211 1100000 00 00112222 33467999997775 8999999999983 245679999998 773 22 4
Q ss_pred HHHhc
Q 009519 455 ADAFK 459 (533)
Q Consensus 455 e~A~~ 459 (533)
++++.
T Consensus 353 ~~~L~ 357 (445)
T PRK09414 353 IEVFL 357 (445)
T ss_pred HHHHH
Confidence 45554
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.08 Score=54.11 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~ 376 (533)
.||-=+.-++-.+++..+.+|+. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-G 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-C
Confidence 36666677777888888888888 9999999999999999999764 43 555 999999998865 3
Q ss_pred CChhhhc--c---cccc---CCcC-C--ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 377 LDPAAAP--F---AKDP---GDFM-G--LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 377 l~~~k~~--~---A~~~---~~~~-~--~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
|+..+.. + .+.. .... . .....+-.|.. ..+.||||=+. ..+.+|++-+..+. .+.-.||.--+|
T Consensus 80 ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i~--~~~ak~I~EgAN 155 (254)
T cd05313 80 FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLLV--KNGCKYVAEGAN 155 (254)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHHH--HcCCEEEEeCCC
Confidence 4422110 0 0000 0000 0 00011222222 35799999776 47999999999994 356789999999
Q ss_pred -CCCcccCCHHHHhc
Q 009519 446 -PTMNAECTAADAFK 459 (533)
Q Consensus 446 -Pt~~aE~tpe~A~~ 459 (533)
|+.. .+++.++
T Consensus 156 ~p~t~---~a~~~L~ 167 (254)
T cd05313 156 MPCTA---EAIEVFR 167 (254)
T ss_pred CCCCH---HHHHHHH
Confidence 8752 3445444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.46 Score=52.29 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=128.4
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhcc----Cceec----------cCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----FCMFN----------DDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~~----~~~Fn----------DDiQGTaaV~LA 305 (533)
.+..|...+.-.||+.+.+.. |..-|-=.|++..-. --+.+.|+.- ..++. +--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 556688899999999998644 777777788875331 2356777652 22221 112238887888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc--
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP-- 383 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~-- 383 (533)
++-.+++..|.+|+. .||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|++.. .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~l 278 (445)
T PRK14030 214 FVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDYM 278 (445)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHHH
Confidence 888899998988888 9999999999999999999765 43 4577789999998864 35443311
Q ss_pred --cccccC--------CcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccC
Q 009519 384 --FAKDPG--------DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAEC 452 (533)
Q Consensus 384 --~A~~~~--------~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~ 452 (533)
+-.... ...+ ....+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |+. -
T Consensus 279 ~~~k~~~~~~~~~~~~~~~g-a~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~--~~ak~V~EgAN~p~t---~ 350 (445)
T PRK14030 279 LELRASGNDIVAPYAEKFPG-STFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK--NGVLCVAEVSNMGCT---A 350 (445)
T ss_pred HHHHHhcCccHHHHHhcCCC-CEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH--cCCeEEEeCCCCCCC---H
Confidence 000000 0000 00011122 22367999997765 79999999999942 56779999999 543 1
Q ss_pred CHHHHhc
Q 009519 453 TAADAFK 459 (533)
Q Consensus 453 tpe~A~~ 459 (533)
.+++.++
T Consensus 351 eA~~iL~ 357 (445)
T PRK14030 351 EAIDKFI 357 (445)
T ss_pred HHHHHHH
Confidence 2445554
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.058 Score=53.86 Aligned_cols=130 Identities=19% Similarity=0.312 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.-||-=+..++-.+++..+.+++. .||+|.|.|..|.++|++|.+. |. +=+.+.|++|-+++.. .
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~-G 72 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD-G 72 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-C
Confidence 346666777788888888877777 9999999999999999998764 43 3355999999998865 3
Q ss_pred CChhhh-ccccccCCcCCcc--CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 377 LDPAAA-PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 377 l~~~k~-~~A~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
|+.... .+.+........+ ...+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |..
T Consensus 73 ld~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~t 141 (227)
T cd01076 73 LDVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPTT 141 (227)
T ss_pred CCHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCCC
Confidence 432221 1111110000000 0112233 3345889999877 5899999999998 3789999999 553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.085 Score=51.44 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 299 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 299 TaaV~LAgli~Alr~~--g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.|.+. |. +++++|++. +.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~~ 63 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------EA 63 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------HH
Confidence 5555566667777775 777777 9999999999999999988764 42 688888641 11
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAA 455 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe 455 (533)
+..++..|. .. ..+..+... .+.|+++=++. .+.+|++.++.| .-++|..-+| |+. +..++
T Consensus 64 ~~~~~~~~g---~~------~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l-----~~~~v~~~AN~~~~--~~~~~ 125 (200)
T cd01075 64 VARAAELFG---AT------VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL-----KAKAIAGAANNQLA--DPRHG 125 (200)
T ss_pred HHHHHHHcC---CE------EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc-----CCCEEEECCcCccC--CHhHH
Confidence 222222221 00 111233333 36899996554 799999999999 3568998888 665 33445
Q ss_pred HHhc
Q 009519 456 DAFK 459 (533)
Q Consensus 456 ~A~~ 459 (533)
+.++
T Consensus 126 ~~L~ 129 (200)
T cd01075 126 QMLH 129 (200)
T ss_pred HHHH
Confidence 5554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.034 Score=57.72 Aligned_cols=97 Identities=18% Similarity=0.332 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+=.-+|-+|++.-++..+.+|+. .+++|+|+|. .|..+|.+|... | ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t-------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS-------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc--------
Confidence 34566888999999999999988 9999999988 999999999753 3 2688887631
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.|-
T Consensus 193 ---------------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk-------~gavVIDvGi~~ 233 (286)
T PRK14175 193 ---------------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK-------EGAVIIDVGNTP 233 (286)
T ss_pred ---------------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEcCCCc
Confidence 137888888 99999999999999998764 456777776643
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.036 Score=60.24 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=108.6
Q ss_pred hhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHH
Q 009519 201 LDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFE 280 (533)
Q Consensus 201 l~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~ 280 (533)
-+||..++|+| . +=+| .+-=+| +.=+.|-.+.+..+-+..+ ++--..||.
T Consensus 94 ~HLfrVAsGLD---S----mVlG--------E~QILG------------QVK~Ay~~a~~~g~~g~~L---~~lFqkAi~ 143 (414)
T COG0373 94 RHLFRVASGLD---S----LVLG--------ETQILG------------QVKDAYAKAQENGTLGKVL---NRLFQKAIS 143 (414)
T ss_pred HHHHHHhccch---h----hhcC--------cHHHHH------------HHHHHHHHHHHcCCchHHH---HHHHHHHHH
Confidence 47899999999 3 3345 111111 2334445555444422222 333467888
Q ss_pred HHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 009519 281 TLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (533)
Q Consensus 281 iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~ 358 (533)
.=.|.|.+ |. .|--+|.-|++--|-++.|. |++ .+++|+|||..|-.+|+.|... |.
T Consensus 144 ~gKrvRseT~I~------~~~VSi~saAv~lA~~~~~~-L~~---~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 144 VGKRVRSETGIG------KGAVSISSAAVELAKRIFGS-LKD---KKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHhhcccCCC------CCccchHHHHHHHHHHHhcc-ccc---CeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 88888876 31 23333444445555555443 555 9999999999999999988875 43
Q ss_pred CeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCC
Q 009519 359 NKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 359 ~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~er 437 (533)
++|+++++ |..| -+.+|+.-.- . -.....|.+.+.. .||+|-.++. .-+++.+.++.-.+ ..+
T Consensus 203 ~~i~IaNR----T~er------A~~La~~~~~-~-~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~--~r~ 266 (414)
T COG0373 203 KKITIANR----TLER------AEELAKKLGA-E-AVALEELLEALAE--ADVVISSTSAPHPIITREMVERALK--IRK 266 (414)
T ss_pred CEEEEEcC----CHHH------HHHHHHHhCC-e-eecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh--ccc
Confidence 58998876 2222 1233332110 0 0112457777777 8998865443 46899988876532 333
Q ss_pred C-eEEecCCCCC
Q 009519 438 P-AIFAMSNPTM 448 (533)
Q Consensus 438 P-IIFaLSNPt~ 448 (533)
. +||=|+||-.
T Consensus 267 ~~livDiavPRd 278 (414)
T COG0373 267 RLLIVDIAVPRD 278 (414)
T ss_pred CeEEEEecCCCC
Confidence 4 9999999986
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.057 Score=60.20 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=84.8
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCCh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND 354 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~-~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~ 354 (533)
..||..=.|-|.+--. =.|--+|.-+++=-|.+..|. +|.+ .+|+|+|||..|..+++.|.. .|.
T Consensus 225 ~~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~-- 290 (519)
T PLN00203 225 KHAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC-- 290 (519)
T ss_pred HHHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC--
Confidence 3455555555554211 123334444555555556553 4667 999999999999999887764 343
Q ss_pred hhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhc
Q 009519 355 AFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES 433 (533)
Q Consensus 355 ~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~ 433 (533)
++|+++++. .++ .......|-...-.+ ....++.+++.. +|++|.+++.+ .+|++++++.|-+.
T Consensus 291 ----~~V~V~nRs----~er--a~~La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~ 355 (519)
T PLN00203 291 ----TKMVVVNRS----EER--VAALREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPA 355 (519)
T ss_pred ----CeEEEEeCC----HHH--HHHHHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhc
Confidence 579998874 111 111222221000000 112457888877 89999876543 58999999998320
Q ss_pred --CCCCC-eEEecCCCCC
Q 009519 434 --DSVKP-AIFAMSNPTM 448 (533)
Q Consensus 434 --~~erP-IIFaLSNPt~ 448 (533)
...+| +|+=||.|-.
T Consensus 356 ~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 356 SDTVGGKRLFVDISVPRN 373 (519)
T ss_pred ccccCCCeEEEEeCCCCC
Confidence 11244 5667999974
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.027 Score=61.13 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccc-cCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~-~~~~~~~~~~~~L~ 401 (533)
.||+|+||||+ =.-+++-..+.+.+.++. ..|||+|-+ .+|- .+...-+.+++. ..++. .....++.
T Consensus 1 ~KI~iIGgGS~--~tp~li~~l~~~~~~l~~----~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~-v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEELPI----SEVTLYDID----EERLDIILTIAKRYVEEVGADIK-FEKTMDLE 69 (425)
T ss_pred CEEEEECCchH--hHHHHHHHHHcChhhCCC----CEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCHH
Confidence 38999999996 334444444432224442 689999964 3331 122212222222 11111 11346899
Q ss_pred HHhcccCCcEEEEe--------------------------ccCCCCCC--------HHHHHHhhhcCCCCCeEEecCCCC
Q 009519 402 EVVRKVKPHVLLGL--------------------------SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 402 e~V~~vkptvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~~erPIIFaLSNPt 447 (533)
||+++ +|.+|-. -|.+|.|. .++++.|. ++++..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~-~~~P~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXE-KLSPDAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHH-HhCCCcEEEecCChH
Confidence 99999 8888721 12234333 38888885 499999999999999
Q ss_pred CcccCCHHHHhcccCCcEEEecC
Q 009519 448 MNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 448 ~~aE~tpe~A~~wt~Grai~AtG 470 (533)
. +.-+-+++++....+|++|
T Consensus 147 d---i~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 G---EVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred H---HHHHHHHHhCCCCcEEEEC
Confidence 6 5555666677445567666
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.032 Score=60.46 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=76.9
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
..||+.=.|-|.+.-. + .|.-+|+-+|+= ...+.+.+|.+.|++|+|||.+|-.+|..|.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~----la~~~~~~l~~kkvlviGaG~~a~~va~~L~~-----~g~--- 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAIT----LAKRQLDNISSKNVLIIGAGQTGELLFRHVTA-----LAP--- 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHH----HHHHHhcCccCCEEEEEcCcHHHHHHHHHHHH-----cCC---
Confidence 4566666677765311 0 112223333333 33333333444999999999999888888764 344
Q ss_pred hhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcC
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD 434 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~ 434 (533)
++|+++++. .++ -..++..-.... .....+|.+++.. .|++|-+++.+ -++|++.++
T Consensus 206 ---~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------ 263 (414)
T PRK13940 206 ---KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------ 263 (414)
T ss_pred ---CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------
Confidence 579988773 222 122222110000 0112457788877 99999888765 457865532
Q ss_pred CCCCe-EEecCCCCC
Q 009519 435 SVKPA-IFAMSNPTM 448 (533)
Q Consensus 435 ~erPI-IFaLSNPt~ 448 (533)
.+|+ |+=||.|-.
T Consensus 264 -~~~~~~iDLavPRd 277 (414)
T PRK13940 264 -DKPRVFIDISIPQA 277 (414)
T ss_pred -CCCeEEEEeCCCCC
Confidence 4565 467999975
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.16 Score=53.49 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhh
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~ 382 (533)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+- ..+.|+|.+- ..+. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~~----~KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAPG----FKVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCCC----CEEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 345678888887655 49999999 9999999998764 2332 4799999865 1111 13332211
Q ss_pred ccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 383 ~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+.+-. +.....++.+++++ .|++|=+.+.+ |. ..+++++.+.+ ++.+.||+.-|||..
T Consensus 68 -~~~i~----~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~-~~p~aivivvSNPvD 139 (323)
T PLN00106 68 -PAQVR----GFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAK-HCPNALVNIISNPVN 139 (323)
T ss_pred -CceEE----EEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCCcc
Confidence 11110 00023468899998 89988665543 21 34567777754 889999999999995
Q ss_pred -cccCCHHHHhcccC--CcEEEecCC
Q 009519 449 -NAECTAADAFKHAG--ENIVFASGS 471 (533)
Q Consensus 449 -~aE~tpe~A~~wt~--Grai~AtGS 471 (533)
.+.+....+.+++. =.-+|.+|.
T Consensus 140 ~~~~i~t~~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 140 STVPIAAEVLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred ccHHHHHHHHHHcCCCCcceEEEEec
Confidence 22244444545442 135666663
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.055 Score=57.38 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=72.7
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
..||..=.|-|.+.-. |.++|.++.+ |.+...+ +.+|.+.|++|+|||..|--+|+.|.+. |.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~--av~~~~~-~~~l~~k~vLvIGaGem~~l~a~~L~~~-----g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESV--VQQELRR-RQKSKKASLLFIGYSEINRKVAYYLQRQ-----GY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHH--HHHHHHH-hCCccCCEEEEEcccHHHHHHHHHHHHc-----CC---
Confidence 5666666777765211 4445555443 2222221 2334449999999999988887777653 44
Q ss_pred hhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhh
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMR 431 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma 431 (533)
++|+++.+.-. ..+|.... ....+.. .+.||+|-.| +..-.++.+.++..
T Consensus 199 ---~~i~v~nRt~~-----------~~~~~~~~---------~~~~~~~--~~~DvVIs~t~~Tas~~p~i~~~~~~~~- 252 (338)
T PRK00676 199 ---SRITFCSRQQL-----------TLPYRTVV---------REELSFQ--DPYDVIFFGSSESAYAFPHLSWESLADI- 252 (338)
T ss_pred ---CEEEEEcCCcc-----------ccchhhhh---------hhhhhcc--cCCCEEEEcCCcCCCCCceeeHHHHhhc-
Confidence 57999888531 12222110 0001112 3589999642 23345777766543
Q ss_pred hcCCCCCeEEecCCCCC
Q 009519 432 ESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 432 ~~~~erPIIFaLSNPt~ 448 (533)
.+| ++|=||+|-.
T Consensus 253 ---~~r-~~iDLAvPRd 265 (338)
T PRK00676 253 ---PDR-IVFDFNVPRT 265 (338)
T ss_pred ---cCc-EEEEecCCCC
Confidence 124 9999999987
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.094 Score=55.83 Aligned_cols=231 Identities=15% Similarity=0.224 Sum_probs=120.9
Q ss_pred ChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC--CcccccchhhhhHhhhcCCCCCceecEEeeccCC----chhc
Q 009519 156 DKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN----NQKL 229 (533)
Q Consensus 156 d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~--~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTn----N~~L 229 (533)
-|+++.++.+ .+.+|+|=++-+.-.|+-|--- .|-.|......+|. +. |.+-|..= =+.+
T Consensus 19 ~P~~v~~l~~----~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~--~d--------ii~~Vk~p~~~~~~~~ 84 (370)
T TIGR00518 19 TPAGVAELTS----RGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD--AE--------LVLKVKEPLPEEYGYL 84 (370)
T ss_pred CHHHHHHHHh----CCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc--CC--------EEEEeCCCCHHHHhhc
Confidence 3556666665 4688999888777777777654 46566544555552 22 23323110 0123
Q ss_pred ccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCcee--ccCcchhHHHHHHHH
Q 009519 230 LEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF--NDDIQGTAGVALAGL 307 (533)
Q Consensus 230 l~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~F--nDDiQGTaaV~LAgl 307 (533)
..+..++++=|+=-. . +.+++..+.-. ..|-+|-+.. -+.++++| +-.+-|--+|.+|+-
T Consensus 85 ~~g~~l~~~~~~a~~----~----~~~~~l~~~~~-t~i~~e~i~~---------~~~~~~~l~~~~~iaG~~av~~aa~ 146 (370)
T TIGR00518 85 RHGQILFTYLHLAAE----R----ALTDALLDSGT-TAIAYETVQT---------ADGALPLLAPMSEVAGRLAAQVGAY 146 (370)
T ss_pred CCCcEEEEEeccCCC----H----HHHHHHHHcCC-eEEEeeeeec---------cCCCCccccchhHHHHHHHHHHHHH
Confidence 344555555555210 0 22222221111 2455554431 11123333 223455555555543
Q ss_pred HHHHHHhC------CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh
Q 009519 308 LGTVRAQG------LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (533)
Q Consensus 308 i~Alr~~g------~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k 381 (533)
..- |..+ .....+...+++|+|+|.+|.++++.+... |. ++.++|++ ..+ +....
T Consensus 147 ~~~-~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~--~~~l~ 207 (370)
T TIGR00518 147 HLE-KTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR--LRQLD 207 (370)
T ss_pred HhH-hhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH--HHHHH
Confidence 322 2222 111113348999999999999999988764 32 58888873 111 11111
Q ss_pred hccccccCCcCCccCCCCHHHHhcccCCcEEEEeccC-----CCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
..|...... ...+...|.++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 208 ~~~g~~v~~--~~~~~~~l~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk----~g~vIvDva~ 268 (370)
T TIGR00518 208 AEFGGRIHT--RYSNAYEIEDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK----PGAVIVDVAI 268 (370)
T ss_pred HhcCceeEe--ccCCHHHHHHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC----CCCEEEEEec
Confidence 122211000 00112358888876 8999987532 4568999999993 5688888773
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.055 Score=58.73 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=77.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccc-cCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~-~~~~~~~~~~~~L~ 401 (533)
.||+|+||||+ -.-.++-..+.+...++ -..|||+|-+- ..| .-+...-+.+++. ..++. .....++.
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~-v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIK-VHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCHH
Confidence 38999999996 44444444333223343 26899999852 122 1111111122221 11111 01246799
Q ss_pred HHhcccCCcEEEEeccCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
||+++ +|.+|=.-.++|. .=.++++.|. ++|+..+|+-.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~-~~~Pda~lin~TNP~ 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVE-ELAPDAWLINFTNPA 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHH-HHCCCeEEEEecCHH
Confidence 99999 7887744333331 1237778885 489999999999999
Q ss_pred CcccCCHHHHhcccCCcEEEecC
Q 009519 448 MNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 448 ~~aE~tpe~A~~wt~Grai~AtG 470 (533)
. +..+-+++++ ..-+|++|
T Consensus 148 ~---ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 148 G---IVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred H---HHHHHHHHhc-cCCEEeeC
Confidence 6 6666677777 44567766
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.057 Score=52.83 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
+|++ .||+|+|+|..|..||..|..+++ +++.++|.+=+ . ..+|+.+ ..+..+- +...
T Consensus 18 ~L~~---~~V~IvG~GglGs~ia~~La~~Gv-----------g~i~lvD~D~v-e--~sNL~Rq-~~~~~~i----G~~K 75 (200)
T TIGR02354 18 KLEQ---ATVAICGLGGLGSNVAINLARAGI-----------GKLILVDFDVV-E--PSNLNRQ-QYKASQV----GEPK 75 (200)
T ss_pred HHhC---CcEEEECcCHHHHHHHHHHHHcCC-----------CEEEEECCCEE-c--ccccccc-cCChhhC----CCHH
Confidence 3455 999999999999999999987644 68999998733 1 2345542 1111111 1111
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCCcccCC
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTMNAECT 453 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF-aLSNPt~~aE~t 453 (533)
...+.+.++...|++-|- +...-++++-+...- .+--+|+ +.-||..+.+..
T Consensus 76 a~~~~~~l~~inp~~~i~--~~~~~i~~~~~~~~~---~~~DlVi~a~Dn~~~k~~l~ 128 (200)
T TIGR02354 76 TEALKENISEINPYTEIE--AYDEKITEENIDKFF---KDADIVCEAFDNAEAKAMLV 128 (200)
T ss_pred HHHHHHHHHHHCCCCEEE--EeeeeCCHhHHHHHh---cCCCEEEECCCCHHHHHHHH
Confidence 234667777778876443 233556776666542 2333444 556766654433
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.32 Score=50.64 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++..++..+.+++. .+++|+|-|- .|.-+|.+|... | ..+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~~-----~-------atVtv~hs~----------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLLA-----G-------CTVTVCHRF----------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CeEEEEECC-----------
Confidence 456788899999999999988 9999999988 999999998652 3 257788763
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CCCC----cccCC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NPTM----NAECT 453 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NPt~----~aE~t 453 (533)
+ .+|.+.+++ +|++|-.-+.|+.|+.++|+ +.-+|.=.. |+.. ---+.
T Consensus 193 ---------T---------~~l~~~~~~--ADIvi~avG~p~~v~~~~vk-------~gavVIDvGin~~~~gk~~GDvd 245 (285)
T PRK10792 193 ---------T---------KNLRHHVRN--ADLLVVAVGKPGFIPGEWIK-------PGAIVIDVGINRLEDGKLVGDVE 245 (285)
T ss_pred ---------C---------CCHHHHHhh--CCEEEEcCCCcccccHHHcC-------CCcEEEEcccccccCCCcCCCcC
Confidence 1 248888988 99999999999999998887 456776555 4321 12355
Q ss_pred HHHHhc
Q 009519 454 AADAFK 459 (533)
Q Consensus 454 pe~A~~ 459 (533)
+|.+.+
T Consensus 246 ~~~~~~ 251 (285)
T PRK10792 246 FETAAE 251 (285)
T ss_pred HHHHHh
Confidence 566655
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.35 Score=49.67 Aligned_cols=37 Identities=5% Similarity=-0.216 Sum_probs=29.7
Q ss_pred eecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 484 GHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 484 ~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
..|++..|-+.++.+.=++.++..--++.+-+..+.+
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~ 220 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIR 220 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578888888999999998888888888777776654
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.17 Score=52.58 Aligned_cols=91 Identities=11% Similarity=0.193 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-+|++.=++..+.+++. ++++|+|.| ..|.-+|.+|... |. .+.+|+++
T Consensus 138 PcTp~avi~lL~~~~i~l~G---k~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~------------ 190 (285)
T PRK14191 138 PATPMGVMRLLKHYHIEIKG---KDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL------------ 190 (285)
T ss_pred CCcHHHHHHHHHHhCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC------------
Confidence 46778888888889998888 999999999 9999999999753 32 46666431
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|...+.++.+++++|+ +.-+|.=..
T Consensus 191 -----------------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk-------~GavVIDvG 229 (285)
T PRK14191 191 -----------------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK-------KGAVVVDIG 229 (285)
T ss_pred -----------------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC-------CCcEEEEee
Confidence 1237788888 99999999999999999986 445665443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.21 Score=52.03 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=78.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+-=...+. -++... ..+....... ....+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i---~~~~d~~ 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHF-STLVGSNINI---LGTNNYE 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhh-ccccCCCeEE---EeCCCHH
Confidence 4799999999999999887664 3542 599999742111111 012211 1111110000 1124566
Q ss_pred HHhcccCCcEEEEeccCCC--------------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcE
Q 009519 402 EVVRKVKPHVLLGLSGVGG--------------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g--------------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Gra 465 (533)
++++ +|++|=+.+.+. -+-+++.+.|.+ +++.-+++-.|||.. .....+.+++. =.-
T Consensus 70 -~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~-~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~r 142 (319)
T PTZ00117 70 -DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKK-YCPNAFVICVTNPLD---CMVKVFQEKSGIPSNK 142 (319)
T ss_pred -HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecChHH---HHHHHHHHhhCCCccc
Confidence 6777 898885554332 234588888864 889997777899996 55666666652 145
Q ss_pred EEecCCCCc
Q 009519 466 VFASGSPFE 474 (533)
Q Consensus 466 i~AtGSPf~ 474 (533)
+|++|+-.+
T Consensus 143 viG~gt~ld 151 (319)
T PTZ00117 143 ICGMAGVLD 151 (319)
T ss_pred EEEecchHH
Confidence 888885443
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.11 Score=53.43 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAP 383 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~ 383 (533)
.|++.+++..+..++. ++++|+|||.||.+++..|... |. ++|+++|+. ..+ +.+.+ .
T Consensus 112 ~G~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la~---~ 170 (284)
T PRK12549 112 SGFAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALAD---E 170 (284)
T ss_pred HHHHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHHH---H
Confidence 3577888765555666 8999999999999999888764 44 579999984 222 11211 1
Q ss_pred cccccCCcCCccCCCCHHHHhcccCCcEEEEeccC
Q 009519 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
+.+...... .....++.+.++. +|++|.++..
T Consensus 171 l~~~~~~~~-~~~~~~~~~~~~~--aDiVInaTp~ 202 (284)
T PRK12549 171 LNARFPAAR-ATAGSDLAAALAA--ADGLVHATPT 202 (284)
T ss_pred HHhhCCCeE-EEeccchHhhhCC--CCEEEECCcC
Confidence 111000000 0012345666665 8999988754
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.18 Score=48.11 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
||+.+++.+..+++..|.++++ .+++++|+ |..|..++..+... | .++++++++. ++ +
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~~----~~--~ 65 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRDL----ER--A 65 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH----HH--H
Confidence 6777788888888878888888 99999997 99998888877652 3 3788887641 11 1
Q ss_pred Chhhhccccc-cCCc--CCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 378 DPAAAPFAKD-PGDF--MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 378 ~~~k~~~A~~-~~~~--~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
......+... .... ....+..++.+++++ .|++|-.+. .|..+......- ..+..+++=++.|-+
T Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~-~g~~~~~~~~~~---~~~~~vv~D~~~~~~ 133 (194)
T cd01078 66 QKAADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGA-AGVELLEKLAWA---PKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCC-CCceechhhhcc---cCceeEEEEccCCCC
Confidence 1111111100 0000 000112346677876 899998665 455433222211 111236777777665
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.63 Score=43.48 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~ 380 (533)
.|..|++.-++..|.+++. ++|+++|.+. .|.-+|.+|. ++|. .+..+|++.
T Consensus 10 ~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~vG~pla~lL~-----~~ga-------tV~~~~~~t------------ 62 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDG---KKVLVVGRSGIVGAPLQCLLQ-----RDGA-------TVYSCDWKT------------ 62 (140)
T ss_pred cHHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHHH-----HCCC-------EEEEeCCCC------------
Confidence 4678889999999999988 9999999864 4444554443 3443 567776531
Q ss_pred hhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 381 k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.+|.|++++ +|++|-..+.++.|+.|+||
T Consensus 63 -----------------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 -----------------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred -----------------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 247888988 99999999999999999988
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.21 Score=52.19 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=76.5
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
..||.|+|||..|.++|.+++. .|+. .+.|+|.+-=...+. -++... ..+....... ....++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I---~~~~d~- 69 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHS-NVIAGSNSKV---IGTNNY- 69 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhh-hhccCCCeEE---EECCCH-
Confidence 3699999999999999987653 4652 499999743221111 112111 1111111011 112456
Q ss_pred HHhcccCCcEEEEeccCCC---C----------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC
Q 009519 402 EVVRKVKPHVLLGLSGVGG---V----------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG 462 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g---~----------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~ 462 (533)
+++++ +|++|=+.+.++ - +-.++++.|.+ +++.-+++--|||.. .....+.+.+.
T Consensus 70 ~~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~-~~p~a~~iv~sNP~d---i~t~~~~~~sg 143 (321)
T PTZ00082 70 EDIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK-YCPNAFVIVITNPLD---VMVKLLQEHSG 143 (321)
T ss_pred HHhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHhcC
Confidence 56777 899885444332 2 12467777754 777778999999996 45555666552
Q ss_pred --CcEEEecCCCC
Q 009519 463 --ENIVFASGSPF 473 (533)
Q Consensus 463 --Grai~AtGSPf 473 (533)
-.-+|++|.-.
T Consensus 144 ~p~~rviGlgt~l 156 (321)
T PTZ00082 144 LPKNKVCGMAGVL 156 (321)
T ss_pred CChhhEEEecCcc
Confidence 24688888444
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.27 Score=54.82 Aligned_cols=108 Identities=24% Similarity=0.358 Sum_probs=60.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-C---CCC------------hhhhccccc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-K---NLD------------PAAAPFAKD 387 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~---~l~------------~~k~~~A~~ 387 (533)
.|++|+|||.+|++.+...... | | +++.+|.+- .| + .+- .....|++.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l-----G-----A--~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL-----G-----A--IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-----C--EEEEEeCCH----HHHHHHHHcCCeEEEeccccccccccchhhh
Confidence 7999999999999987776554 3 1 477777631 11 0 000 001112221
Q ss_pred cCC-cCCccCCCCHHHHhcccCCcEEEEeccCCC-----CCCHHHHHHhhhcCCCCCeEEecCCCC-CcccCCH
Q 009519 388 PGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTA 454 (533)
Q Consensus 388 ~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~tp 454 (533)
..+ +.. .....+.+.++ +.|++|.+++.+| +++++.++.|. +.-+|.=++-+. ..+|++.
T Consensus 230 ~s~~~~~-~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk----pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 230 MSEEFIK-AEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK----PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred cchhHHH-HHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC----CCCEEEEEccCCCCCccccc
Confidence 100 000 00011222233 3899999999876 67999999994 455666677653 3345553
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.12 Score=51.83 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=83.0
Q ss_pred EEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 326 iv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
|.|+|| |..|.++|..|+.. |. .....++|+|.+.-..+. ..++.+...++ ... .. ....++.++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~i---~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-KV---SITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-EE---EECCchHHH
Confidence 579999 99999999887753 31 112589999985411111 11232222222 111 11 124568899
Q ss_pred hcccCCcEEEEeccCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEEE
Q 009519 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai~ 467 (533)
+++ +|++|=+.+.++. .-+++.+.|. ++++..+++-.|||.. ....-+++++ .-.-+|
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~~i~~tNP~d---~~t~~~~~~sg~~~~kvi 141 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIE-KYSPDAWIIVVSNPVD---IITYLVWRYSGLPKEKVI 141 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEecCcHH---HHHHHHHHHhCCCchhEE
Confidence 988 8998854433221 3578888885 4889999999999995 6666677773 345688
Q ss_pred ecCCCCccee
Q 009519 468 ASGSPFENVD 477 (533)
Q Consensus 468 AtGSPf~pv~ 477 (533)
++|. .++..
T Consensus 142 G~~~-ld~~r 150 (263)
T cd00650 142 GLGT-LDPIR 150 (263)
T ss_pred Eeec-chHHH
Confidence 9986 65543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.13 Score=53.29 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=75.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cC-CccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FM-GLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~-~~~~~~~L 400 (533)
.||.|+|+|..|.++|..++.. |+ -+++++|..--+..++ ...+.+.... .. ......++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~------~~VvlvDi~~~l~~g~------a~d~~~~~~~~~~~~~i~~t~d~ 64 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL------ADLVLLDVVEGIPQGK------ALDMYEASPVGGFDTKVTGTNNY 64 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCCChhHHH------HHhhhhhhhccCCCcEEEecCCH
Confidence 4899999999999999987653 33 1499999832221111 1111111000 00 01123567
Q ss_pred HHHhcccCCcEEEEeccC---CC-C------CC----HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCc
Q 009519 401 LEVVRKVKPHVLLGLSGV---GG-V------FN----EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GEN 464 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g-~------Ft----eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Gr 464 (533)
.+ ++. .|++|=+.+. +| . ++ +++++.|.+ ++.+.+|+-.|||.. +...-+++++ .-+
T Consensus 65 ~~-~~~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~-~~p~~~iIv~tNP~d---i~t~~~~~~sg~~~~ 137 (305)
T TIGR01763 65 AD-TAN--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIME-HSPNPIIVVVSNPLD---AMTYVAWQKSGFPKE 137 (305)
T ss_pred HH-hCC--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHHCcCHH
Confidence 76 666 7887633332 22 1 33 345555654 788999999999996 7777777774 224
Q ss_pred EEEecCCCCc
Q 009519 465 IVFASGSPFE 474 (533)
Q Consensus 465 ai~AtGSPf~ 474 (533)
-+|++|.=.+
T Consensus 138 rviG~g~~ld 147 (305)
T TIGR01763 138 RVIGQAGVLD 147 (305)
T ss_pred HEEEeccchH
Confidence 5889885444
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.18 Score=51.49 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=74.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cCC-ccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~~-~~~~~~L 400 (533)
.||.|+|||..|.++|..+... |+ ..++++|.+ .++ +......+.+.... ... .....+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~------~ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~~d~ 65 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL------GDVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGTNDY 65 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------eEEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeCCCH
Confidence 5899999999999999987642 33 169999982 111 11111111111000 000 0112456
Q ss_pred HHHhcccCCcEEEEe---ccCCC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC---
Q 009519 401 LEVVRKVKPHVLLGL---SGVGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--- 463 (533)
Q Consensus 401 ~e~V~~vkptvLIG~---S~~~g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G--- 463 (533)
+++++ +|++|=+ ...+| -.-+++++.|.+ .++..+++-.|||.. ....-+++++ |
T Consensus 66 -~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 66 -EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKK-YAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred -HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 45776 8988832 22222 223566677754 778888888899996 5555666665 4
Q ss_pred cEEEecCCCCc
Q 009519 464 NIVFASGSPFE 474 (533)
Q Consensus 464 rai~AtGSPf~ 474 (533)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56899985554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.059 Score=49.71 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=67.9
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+|| |..|..+|-+|+.. |+- ++|.|+|.+ ......--+|.+...+.-++. ....+..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~------~i~~~~~~ 65 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPV------RITSGDYE 65 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEE------EEEESSGG
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhccccc------cccccccc
Confidence 8999999 99999999988763 443 469999986 211110012332221111111 01124567
Q ss_pred HhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhc
Q 009519 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~ 459 (533)
++++ .|++|=+.+. +|- +-+++.+.+++ ++++.+++-.|||.. ...+-+++
T Consensus 66 ~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~-~~p~~~vivvtNPvd---~~t~~~~~ 130 (141)
T PF00056_consen 66 ALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAK-YAPDAIVIVVTNPVD---VMTYVAQK 130 (141)
T ss_dssp GGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHH-HSTTSEEEE-SSSHH---HHHHHHHH
T ss_pred cccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHH-hCCccEEEEeCCcHH---HHHHHHHH
Confidence 7877 8998844433 232 23456666654 789999999999974 55555555
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.2 Score=51.74 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++.+++..+.++++ .+++|+|||-|+.+|+-.+.. .|. ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 3578888877888877 899999999998887776654 354 589999984
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.46 Score=47.15 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhC---------CCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc
Q 009519 303 ALAGLLGTVRAQG---------LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (533)
Q Consensus 303 ~LAgli~Alr~~g---------~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~ 372 (533)
|-.|++-=|+..+ .+++. ++++|+|-+ ..|.-+|.||.. +| ..+.+||++|....
T Consensus 36 Tp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~ 100 (197)
T cd01079 36 TPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVF 100 (197)
T ss_pred CHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccccc
Confidence 4455555555554 36666 999999986 568888888765 23 36899999998876
Q ss_pred CCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCC-CCHHHHH
Q 009519 373 ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLK 428 (533)
Q Consensus 373 ~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Fteevv~ 428 (533)
.+.....|. ..+..+ ...+|.|.+++ +|++|-.-+.++. ++.|+|+
T Consensus 101 ~~~~~~~hs--~t~~~~------~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 101 TRGESIRHE--KHHVTD------EEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccc--cccccc------hhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 553211111 000000 01248899998 9999999999998 9999998
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.074 Score=49.49 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=53.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh--ccccccCCc-CCccCCCCHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDF-MGLREGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~--~~A~~~~~~-~~~~~~~~L~ 401 (533)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... -.. ....-..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~---~i~~~~~n~~~~~~-~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE---EINETRQNPKYLPG-IKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH---HHHHHTSETTTSTT-SBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH---HHHHhCCCCCCCCC-cccCcccccccCHH
Confidence 799999999999999988764 3 36777766531111 1111111 01100 000 0001236799
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
+++++ +|++| +. +|--+-+++++.++....+..+|+
T Consensus 65 ~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 65 EALED--ADIII-IA-VPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp HHHTT---SEEE-E--S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred HHhCc--ccEEE-ec-ccHHHHHHHHHHHhhccCCCCEEE
Confidence 99988 78766 33 355577899999965333333333
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.73 Score=48.12 Aligned_cols=127 Identities=17% Similarity=0.298 Sum_probs=78.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|.+|+. .|+. ..|.|+|.+-=..++. -+|.+.. +|-+.. .. ...+. +
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~~-~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGDY-S 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCCH-H
Confidence 699999999999999998764 3443 5799999732111111 1233222 221111 10 12344 4
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai 466 (533)
.+++ .|++|=+.+.+ |- +=+++++.|++ ++...+|+-.|||.. +...-+++++ .-+-+
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~-~~~~~~vivvsNP~d---~~~~~~~k~sg~p~~~v 143 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMA-SGFDGIFLVASNPVD---ILTYATWKLSGFPKERV 143 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCcHH---HHHHHHHHHhCCCHHHE
Confidence 5777 89988555543 31 12456777754 788999999999995 6666777776 34457
Q ss_pred EecCCCC
Q 009519 467 FASGSPF 473 (533)
Q Consensus 467 ~AtGSPf 473 (533)
|++|.--
T Consensus 144 iG~gt~L 150 (315)
T PRK00066 144 IGSGTSL 150 (315)
T ss_pred eecCchH
Confidence 7887554
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.068 Score=53.22 Aligned_cols=124 Identities=22% Similarity=0.287 Sum_probs=72.6
Q ss_pred HHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 009519 282 LERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (533)
Q Consensus 282 L~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i 361 (533)
++||..++..|..+. -.+|++ .||+|+|+|..|..+|+.|+.+++ ++|
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~---~~VlIiG~GGlGs~ia~~La~~Gv-----------g~i 54 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKK---AKVAVVGVGGLGSPVAYYLAAAGV-----------GRI 54 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEE
Confidence 578877766665432 234455 899999999999999999987654 689
Q ss_pred EEEeccCccccCCCCCChhhhccccccCCcCCcc-CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeE
Q 009519 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR-EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAI 440 (533)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~-~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPII 440 (533)
.++|.+=+ +..+|+.+ -.|-.. +. |.. ......+.++...|++-|=.. .+.++++-+...- .+.-+|
T Consensus 55 ~lvD~D~v---e~sNL~Rq-~l~~~~--dv-G~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~l---~~~D~V 122 (231)
T PRK08328 55 LLIDEQTP---ELSNLNRQ-ILHWEE--DL-GKNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEVL---KGVDVI 122 (231)
T ss_pred EEEcCCcc---Chhhhccc-cccChh--hc-CchHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHHH---hcCCEE
Confidence 99997521 12244431 111111 10 100 001234456677788877654 3556776655542 245566
Q ss_pred E-ecCCCCCc
Q 009519 441 F-AMSNPTMN 449 (533)
Q Consensus 441 F-aLSNPt~~ 449 (533)
| +.-|+..+
T Consensus 123 id~~d~~~~r 132 (231)
T PRK08328 123 VDCLDNFETR 132 (231)
T ss_pred EECCCCHHHH
Confidence 6 45576543
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.19 E-value=1 Score=48.52 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+..+ |+ +++.+|... ...
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~~- 152 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QEA- 152 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------ccc-
Confidence 3445688899988888888888 9999999999999999998765 43 688888621 100
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEE-ec-------cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcc
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG-LS-------GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNA 450 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG-~S-------~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~a 450 (533)
... ....+|.|+++. .|+++= +. ..-+.|+++.+..|. +..++.=.|.-..--
T Consensus 153 -------~~~------~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk----~gailIN~aRG~vVd 213 (381)
T PRK00257 153 -------EGD------GDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR----PGAWLINASRGAVVD 213 (381)
T ss_pred -------ccC------ccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC----CCeEEEECCCCcccC
Confidence 000 013469999887 788661 11 124899999999994 677888777643322
Q ss_pred cCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCc
Q 009519 451 ECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (533)
Q Consensus 451 E~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 508 (533)
|..-.+|++ .|+...|.=-=|++-...+.. =.-.|+.+-|=|+-....++.+
T Consensus 214 e~AL~~aL~--~g~i~~a~LDV~e~EP~~~~~----L~~~nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 214 NQALREALL--SGEDLDAVLDVWEGEPQIDLE----LADLCTIATPHIAGYSLDGKAR 265 (381)
T ss_pred HHHHHHHHH--hCCCcEEEEeCCCCCCCCChh----hhhCCEEEcCccccCCHHHHHH
Confidence 222223333 444332211111100001111 1123788888887655555443
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.22 Score=51.35 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=42.0
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++=||=|-. |++.+++..+..+++ .+++++|||-|+-+|+-.|.+. |. ++|+++|+.
T Consensus 104 l~G~NTD~~--------Gf~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVS--------GFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHH--------HHHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 344555544 478888754445666 8999999999999998887654 44 589999873
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.28 Score=44.29 Aligned_cols=113 Identities=18% Similarity=0.315 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
.|+.+|++..+.+++. .+++|+|+|..|..+++.+.+. |. .+++++|++ .+ ........+
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~--~~~~~~~~~ 63 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LE--KAKALAERF 63 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HH--HHHHHHHHH
Confidence 5899999988877777 9999999999888888887543 21 478888874 11 111111222
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCC-CHHH---HHHhhhcCCCCCeEEecC-CCCC
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF-NEEV---LKAMRESDSVKPAIFAMS-NPTM 448 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F-teev---v~~Ma~~~~erPIIFaLS-NPt~ 448 (533)
...... ....++.++++. +|++|-+.. ++.. .+++ ...+ .+..+|+=+| +|..
T Consensus 64 ~~~~~~----~~~~~~~~~~~~--~Dvvi~~~~-~~~~~~~~~~~~~~~~----~~~~~v~D~~~~~~~ 121 (155)
T cd01065 64 GELGIA----IAYLDLEELLAE--ADLIINTTP-VGMKPGDELPLPPSLL----KPGGVVYDVVYNPLE 121 (155)
T ss_pred hhcccc----eeecchhhcccc--CCEEEeCcC-CCCCCCCCCCCCHHHc----CCCCEEEEcCcCCCC
Confidence 110000 012456676766 899997765 3432 1111 1122 3567888775 4554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.19 Score=51.03 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc-ccCCCCCChhhhccccccCC---------cCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI-TKERKNLDPAAAPFAKDPGD---------FMG 393 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi-~~~r~~l~~~k~~~A~~~~~---------~~~ 393 (533)
.||.|+|+|..|.+||..+... |. +++++|.+--- ...+..+......+.+...- ...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999887653 43 68899864110 00000000000111100000 000
Q ss_pred ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC-CcEEEecCCC
Q 009519 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSP 472 (533)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~-Grai~AtGSP 472 (533)
.....++.++++. .|++|=+-...-.+.+++++...+ ..+...|+ .||.+.+ .+.++.+... ... |....|
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r-~vg~Hf 143 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIF-ATNSSTL---LPSQFAEATGRPEK-FLALHF 143 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEE-EECcccC---CHHHHHhhcCCccc-EEEEcC
Confidence 0123578888887 788875432112356677777754 33444455 3565553 4444444322 122 333578
Q ss_pred Ccceec
Q 009519 473 FENVDL 478 (533)
Q Consensus 473 f~pv~~ 478 (533)
|.|+..
T Consensus 144 ~~p~~~ 149 (287)
T PRK08293 144 ANEIWK 149 (287)
T ss_pred CCCCCc
Confidence 888753
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.45 Score=49.61 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++..++-.+.+++. .+++|+|.+- .|.-+|.+|... | ..+.+|+++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~----------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF----------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc-----------
Confidence 456888999999999999988 9999999988 999999998752 3 256777642
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.|+.+++++|+
T Consensus 198 ------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247888888 99999999999999999777
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.23 Score=50.17 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=88.6
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc
Q 009519 294 DDIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (533)
Q Consensus 294 DDiQGTaaV~LAgli~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~ 372 (533)
|--+-||-=+..++-.+++..+.. ++. .|++|-|.|..|...|+.|.+... +=+-+.|++|.|++
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~Ga-----------~vv~vsD~~G~i~~ 70 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAELGA-----------KVVAVSDSSGAIYD 70 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHTTE-----------EEEEEEESSEEEEE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHcCC-----------EEEEEecCceEEEc
Confidence 344567777888888999986665 777 999999999999999999987533 34667799999886
Q ss_pred CCC----CCChhhhccccccCCcCCc-c-CCCCHHH--HhcccCCcEEEEeccCCCCCCHHHHH-HhhhcCCCCCeEEec
Q 009519 373 ERK----NLDPAAAPFAKDPGDFMGL-R-EGASLLE--VVRKVKPHVLLGLSGVGGVFNEEVLK-AMRESDSVKPAIFAM 443 (533)
Q Consensus 373 ~r~----~l~~~k~~~A~~~~~~~~~-~-~~~~L~e--~V~~vkptvLIG~S~~~g~Fteevv~-~Ma~~~~erPIIFaL 443 (533)
... .|-.++...--.-...... + ...-+.+ .+-.++.||||=+. .++.+|++.+. .+. +.-+||.--
T Consensus 71 ~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A-~~~~I~~~~~~~~i~---~~akiIveg 146 (244)
T PF00208_consen 71 PDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCA-LGNVINEDNAPSLIK---SGAKIIVEG 146 (244)
T ss_dssp TTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEES-SSTSBSCHHHCHCHH---TT-SEEEES
T ss_pred CCCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEcC-CCCeeCHHHHHHHHh---ccCcEEEeC
Confidence 441 1222211110000000000 0 0000111 34446899999884 68999999999 773 357899999
Q ss_pred CC-CCC
Q 009519 444 SN-PTM 448 (533)
Q Consensus 444 SN-Pt~ 448 (533)
+| |+.
T Consensus 147 AN~p~t 152 (244)
T PF00208_consen 147 ANGPLT 152 (244)
T ss_dssp SSSSBS
T ss_pred cchhcc
Confidence 99 553
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.25 Score=41.43 Aligned_cols=95 Identities=15% Similarity=0.216 Sum_probs=60.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-eccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lv-D~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|+|..|.++++.+... |. ...+|+++ +++ . +.+.+.++.+... ....+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~----~--~~~~~~~~~~~~~-------~~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS----P--EKAAELAKEYGVQ-------ATADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS----H--HHHHHHHHHCTTE-------EESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc----H--HHHHHHHHhhccc-------cccCChHHh
Confidence 789999999999999888764 43 22577755 552 1 1122222222210 012368999
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
++. +|++| ++. +...-+++.+.+ +...+..+|..++||
T Consensus 59 ~~~--advvi-lav-~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 59 AQE--ADVVI-LAV-KPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH--TSEEE-E-S--GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hcc--CCEEE-EEE-CHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 997 89977 554 445556788887 336788999988886
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.8 Score=49.54 Aligned_cols=185 Identities=10% Similarity=0.093 Sum_probs=98.2
Q ss_pred ccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhh------hhHhhhcCCCCCc-eecEEeeccC
Q 009519 153 SAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKL------DVYVAAAGINPQR-ILPVMLDVGT 224 (533)
Q Consensus 153 s~~d~~~i~~~l~n~p~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~~GKl------~LY~a~aGI~P~~-~lPI~LDvGT 224 (533)
+..|-..+..+|+.. ++++. +++| +.+.-+--.+.+-.-+..+.. .| ..+ |+..-. .+|+-+
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~L-~~~-GiP~~~~~~P~G~---- 245 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARAL-RER-GAKVLTAPFPLGP---- 245 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHHH-HHc-CCccccCCCCcCh----
Confidence 345556788888864 56664 7787 556655555443222222222 12 455 665322 244322
Q ss_pred CchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHH
Q 009519 225 NNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVAL 304 (533)
Q Consensus 225 nN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~L 304 (533)
+-.|+|++.+.+.+.. ..+.+-+.+++.|.
T Consensus 246 -------------------------~~T~~~L~~la~~~g~--------~~~~~~~~~~~er~----------------- 275 (427)
T PRK02842 246 -------------------------EGTRAWLEAAAAAFGI--------DPDGLEEREAPAWE----------------- 275 (427)
T ss_pred -------------------------HHHHHHHHHHHHHhCc--------CHhHHHHHHHHHHH-----------------
Confidence 2378888888887631 11222233444442
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
-+..++....+.++. .|++|+|.+.-.+++++.|.+ +.|+. +..+-+. +..++.+.+.-+.+
T Consensus 276 -~~~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~e----elGm~-------~v~v~t~---~~~~~~~~~~~~~l 337 (427)
T PRK02842 276 -RARKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSR----ECGME-------LVEVGTP---YLNRRFLAAELALL 337 (427)
T ss_pred -HHHHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHH----hCCCE-------EEEeCCC---CCCHHHHHHHHHhc
Confidence 245555566666777 999999999889999999876 13552 2222111 01111111111112
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEec
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (533)
.....-..+ .+...+++.++..|||.|||-|
T Consensus 338 ~~~~~v~~~-~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 338 PDGVRIVEG-QDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHcCCCEEEccC
Confidence 111000000 1223468899999999999977
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.86 Score=47.99 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+-.||+|.|| |..|..+|..|.. .++. ..+.|+|.+ .. .+. -+|.+... ...- ....+..+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-----~~~~-----~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v----~~~td~~~ 69 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-----NPHV-----SELSLYDIV-GA-PGVAADLSHIDT-PAKV----TGYADGEL 69 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-----CCCC-----CEEEEEecC-CC-cccccchhhcCc-CceE----EEecCCCc
Confidence 3479999999 9999999987752 2332 579999982 21 111 13332111 0010 00011134
Q ss_pred HHHHhcccCCcEEEEeccC---CC--------C---CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 400 LLEVVRKVKPHVLLGLSGV---GG--------V---FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g--------~---Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
..+++++ .|++|=+.+. +| . ..++++++|.+ ++.+.||+.-|||..
T Consensus 70 ~~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~-~~~~~iviv~SNPvd 129 (321)
T PTZ00325 70 WEKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVAS-SAPKAIVGIVSNPVN 129 (321)
T ss_pred hHHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH
Confidence 5788988 8987744444 33 1 45688889964 888999999999996
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.26 Score=50.43 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+.=||=|-.| ++.+++..+. ++++ ++++|+|||.||-+|+..|.+. |. ++|+++++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nR 157 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALASL-----GV------TDITVINR 157 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeC
Confidence 4456777654 7788876553 4667 9999999999999988877654 44 58999987
Q ss_pred cCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 367 DGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 367 ~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
. .+| ..|.+ .|.... .........++.+++.. +|++|.++..+-.++.+.+.
T Consensus 158 t----~~ka~~La~---~~~~~~-~~~~~~~~~~~~~~~~~--~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 158 N----PDKLSRLVD---LGVQVG-VITRLEGDSGGLAIEKA--AEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred C----HHHHHHHHH---HhhhcC-cceeccchhhhhhcccC--CCEEEECCCCCCCCCHHHhh
Confidence 3 222 11211 111100 00000000123344444 89999998766556555443
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.11 Score=48.87 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC-------------ccccCCCCCChhhhccccc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG-------------LITKERKNLDPAAAPFAKD 387 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G-------------Li~~~r~~l~~~k~~~A~~ 387 (533)
+...||||.|+|.+|.|.++++..... ++...|..= +.+.....+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 334899999999999999999987654 455555420 00100000000 002221
Q ss_pred cCCcCCccCCCCHHHHhcccCCcEEEEecc-----CCCCCCHHHHHHhh
Q 009519 388 PGDFMGLREGASLLEVVRKVKPHVLLGLSG-----VGGVFNEEVLKAMR 431 (533)
Q Consensus 388 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-----~~g~Fteevv~~Ma 431 (533)
...-........|.+.++. .|++|+..- .|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1000000122458888887 899997533 34689999999993
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.21 Score=45.07 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=30.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+.||+++|+|+-|.-+|+.|+..++ ++|.++|.+=+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcce
Confidence 4899999999999999999998755 69999998733
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.16 Score=55.78 Aligned_cols=134 Identities=23% Similarity=0.307 Sum_probs=82.9
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccc-cCCcCCccCCCC
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKD-PGDFMGLREGAS 399 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~-~~~~~~~~~~~~ 399 (533)
++.||+|+||||.. .++++...+.+.+.++. ..|||+|-+ .+|.+ .-..-+.+.+. ..+++ .....+
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~k-v~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVK-VEATTD 70 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEecC
Confidence 45899999999974 56788777776677775 689999973 34422 11111223322 22111 123478
Q ss_pred HHHHhcccCCcEEE---------------------Ee-----ccCCCCCC--------HHHHHHhhhcCCCCCeEEecCC
Q 009519 400 LLEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 400 L~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------eevv~~Ma~~~~erPIIFaLSN 445 (533)
+.||+++ +|.+| |+ .+.||.|. -|+++.| ++.++.--++=.+|
T Consensus 71 ~~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~lNytN 147 (442)
T COG1486 71 RREALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWMLNYTN 147 (442)
T ss_pred HHHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEEeccC
Confidence 9999999 77776 11 11222221 3889999 45899999999999
Q ss_pred CCCcccCCHHHHhcccCC-cEEEecCCC
Q 009519 446 PTMNAECTAADAFKHAGE-NIVFASGSP 472 (533)
Q Consensus 446 Pt~~aE~tpe~A~~wt~G-rai~AtGSP 472 (533)
|.. ++| |-+++|+.. +.|=-+=+|
T Consensus 148 P~~--~vT-eAv~r~~~~~K~VGlCh~~ 172 (442)
T COG1486 148 PAA--IVT-EAVRRLYPKIKIVGLCHGP 172 (442)
T ss_pred hHH--HHH-HHHHHhCCCCcEEeeCCch
Confidence 987 454 455666665 444333333
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.48 Score=49.30 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhH-HHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsA-g~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++..+.+++. .+++++|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~----------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK----------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC-----------
Confidence 456778889999999999988 99999999988 99999998753 32 56665431
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347888888 99999999999999997776
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=91.48 E-value=3 Score=44.24 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHHHHHh----------------CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 009519 297 QGTAGVALAGLLGTVRAQ----------------GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~----------------g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~ 360 (533)
+.+|--+++.+++.+|-. +..|. ++++.|+|.|..|..+|+.+... |+ +
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~---gktvGIiG~G~IG~~vA~~l~af-----G~-------~ 184 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLF---GKTVFILGYGAIGIELAKRLRPF-----GV-------K 184 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCC---CCEEEEECCCHHHHHHHHHHhhC-----CC-------E
Confidence 345556666666666532 23344 49999999999999999999765 43 6
Q ss_pred EEEEeccCccccCCC-CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCC
Q 009519 361 FFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDS 435 (533)
Q Consensus 361 i~lvD~~GLi~~~r~-~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~ 435 (533)
|+.+|+..- .... .+. .+......... .. ....+|.|+++. .|+++-.- ...+.|+++.+..|.
T Consensus 185 V~~~dr~~~--~~~~~~~~-~~~~~~~~~~~-~~-~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---- 253 (347)
T PLN02928 185 LLATRRSWT--SEPEDGLL-IPNGDVDDLVD-EK-GGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---- 253 (347)
T ss_pred EEEECCCCC--hhhhhhhc-ccccccccccc-cc-CcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC----
Confidence 888887420 0000 000 00011000000 00 123579999998 89988542 224899999999993
Q ss_pred CCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhH
Q 009519 436 VKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 436 erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
+..++.=.|.-.---|-.--+|++ .|+.-.|.=-=|.+-..+.. ..--+..|+.+-|=++-
T Consensus 254 ~ga~lINvaRG~lVde~AL~~AL~--~g~i~gAaLDV~~~EP~~~~--~pL~~~~nviiTPHia~ 314 (347)
T PLN02928 254 KGALLVNIARGGLLDYDAVLAALE--SGHLGGLAIDVAWSEPFDPD--DPILKHPNVIITPHVAG 314 (347)
T ss_pred CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEEccCCCCCCCCC--ChhhcCCCEEECCcCCC
Confidence 577888777543321222223333 56644332111111111100 01124578999998874
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.61 Score=44.29 Aligned_cols=145 Identities=20% Similarity=0.201 Sum_probs=82.8
Q ss_pred HhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcC
Q 009519 313 AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM 392 (533)
Q Consensus 313 ~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~ 392 (533)
..+..+.. ++|.|+|.|..|..+|+++....+ +|+.+|+..- +.. .+....
T Consensus 29 ~~~~~l~g---~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~---------~~~-~~~~~~---- 79 (178)
T PF02826_consen 29 FPGRELRG---KTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPK---------PEE-GADEFG---- 79 (178)
T ss_dssp TTBS-STT---SEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCH---------HHH-HHHHTT----
T ss_pred CCccccCC---CEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCC---------hhh-hccccc----
Confidence 34555666 999999999999999999987644 7888988532 111 111110
Q ss_pred CccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe
Q 009519 393 GLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (533)
Q Consensus 393 ~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A 468 (533)
....+|.|+++. .|+++=.- ..-+.|+++.++.|. +..++.-.|.-.---|..--+|++ +|+.--|
T Consensus 80 --~~~~~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk----~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga 149 (178)
T PF02826_consen 80 --VEYVSLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK----PGAVLVNVARGELVDEDALLDALE--SGKIAGA 149 (178)
T ss_dssp --EEESSHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST----TTEEEEESSSGGGB-HHHHHHHHH--TTSEEEE
T ss_pred --ceeeehhhhcch--hhhhhhhhccccccceeeeeeeeeccc----cceEEEeccchhhhhhhHHHHHHh--hccCceE
Confidence 023579999998 89987432 124899999999993 567877766644322222233333 5664433
Q ss_pred cCCCCcceecCCCeeeecccccceeechhh
Q 009519 469 SGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 469 tGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
.=--|++-..+.+ ..--+..|+++-|=+
T Consensus 150 ~lDV~~~EP~~~~--~~l~~~~nvi~TPH~ 177 (178)
T PF02826_consen 150 ALDVFEPEPLPAD--SPLWDLPNVILTPHI 177 (178)
T ss_dssp EESS-SSSSSSTT--HHHHTSTTEEEESS-
T ss_pred EEECCCCCCCCCC--ChHHcCCCEEEeCcc
Confidence 2112222111101 122456677777743
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.46 Score=48.96 Aligned_cols=127 Identities=19% Similarity=0.331 Sum_probs=77.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|+|.+|..+|..|+. .|+. .+|+++|++-=...+- .+|.+.. .+....... ...+.+ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i----~~~~~~-~ 65 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDAL-AFLPSPVKI----KAGDYS-D 65 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEE----EcCCHH-H
Confidence 89999999999999998764 3442 4799999842211111 1222111 111100000 112333 4
Q ss_pred hcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEEE
Q 009519 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai~ 467 (533)
+++ .|++|=+.+.+ |- +=+++.+.|.+ ++..-+|+-.|||.. +...-+++++. -+-+|
T Consensus 66 l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~ 139 (306)
T cd05291 66 CKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVI 139 (306)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEe
Confidence 665 89999776654 21 12566777754 889999999999995 66666766641 13588
Q ss_pred ecCCCC
Q 009519 468 ASGSPF 473 (533)
Q Consensus 468 AtGSPf 473 (533)
++|.-.
T Consensus 140 g~gt~L 145 (306)
T cd05291 140 GTGTSL 145 (306)
T ss_pred eccchH
Confidence 888664
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.3 Score=45.60 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..+... |. ++++.|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 6899999999999999999765 42 57777764
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.35 Score=49.65 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=41.3
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+.-||-| ..|++.+++..+..++. ++++|+|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4556666 34578888876666777 899999999777777666654 454 579999874
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.85 Score=51.07 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=87.8
Q ss_pred hhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceec--cCcchhHHHHH
Q 009519 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFN--DDIQGTAGVAL 304 (533)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~L 304 (533)
+.|..+-.|+|+=|+--. .|.++++.++- -.+|-+|.+-. . .|- .++.+|. .-|-|-.+|..
T Consensus 80 ~~l~~g~tli~~l~p~~n--------~~ll~~l~~k~-it~ia~E~vpr--i----sra-q~~d~lssma~iAGy~Avi~ 143 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN--------PELMEKLAAKN-ITVLAMDAVPR--I----SRA-QKLDALSSMANIAGYRAIIE 143 (511)
T ss_pred HhcCCCCEEEEEcCccCC--------HHHHHHHHHcC-CEEEEeecccc--c----ccC-CccCcchhhHHHHHHHHHHH
Confidence 345566677777765331 33333333322 13677775521 0 111 2234443 45666666666
Q ss_pred HHHHHHHHHhCC--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh--
Q 009519 305 AGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-- 380 (533)
Q Consensus 305 Agli~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~-- 380 (533)
|+=.-.-..+|. .+......|++|+|+|.+|+..+..+..... +++++|.+.-....-..+...
T Consensus 144 Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA------------~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 144 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGA------------IVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred HHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCC------------EEEEEeCCHHHHHHHHHcCCeEE
Confidence 643333222221 1111222799999999999998887766422 477777754311000001000
Q ss_pred ----------hhccccccCC-cCCccCCCCHHHHhcccCCcEEEEeccCCC-----CCCHHHHHHhh
Q 009519 381 ----------AAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMR 431 (533)
Q Consensus 381 ----------k~~~A~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma 431 (533)
..-||+...+ .. ..+..-+.|.++. .|++|++.-++| ++|+++++.|.
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~-~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK 275 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFI-AAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK 275 (511)
T ss_pred eccccccccccccceeecCHHHH-HHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC
Confidence 0012211100 00 0011125566666 899999984444 59999999994
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.21 Score=52.56 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---cccC-----CHHHHhcccCCcEEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVFASGSP 472 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE~-----tpe~A~~wt~Grai~AtGSP 472 (533)
.++-+..+|+++|..||. +.-..++-+.+. +-+|=|+.=.-||.. +.|+ |.++++++.. . |+..-=
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~~--~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lG 176 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARAT--HPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALG 176 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhcC--CcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcC
Confidence 344566789999998885 666666666552 556778888899963 5454 4445544321 1 122122
Q ss_pred CcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHH
Q 009519 473 FENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (533)
Q Consensus 473 f~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA 519 (533)
..||.. +...||-.=|-+.+|-+-=+.-+..--..|.+-+-+|-
T Consensus 177 k~pV~v---~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 177 MRPLHV---RKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred CEeEec---CCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 446655 34788888888888887777766665555666555553
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.63 Score=48.86 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++-.|.+++. ++|+|+|.| ..|..+|.+|... |. .+.+++++
T Consensus 139 ~PcTp~aii~lL~~~~i~l~G---k~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~----------- 192 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTG---KHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR----------- 192 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC-----------
Confidence 345778888888999998888 999999996 9999999999764 42 57777643
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NP 446 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NP 446 (533)
..++.|++++ +|++|=.-+.++.+++++++ +.-||.=.| |+
T Consensus 193 ------------------t~~l~e~~~~--ADIVIsavg~~~~v~~~~ik-------~GaiVIDvgin~ 234 (301)
T PRK14194 193 ------------------STDAKALCRQ--ADIVVAAVGRPRLIDADWLK-------PGAVVIDVGINR 234 (301)
T ss_pred ------------------CCCHHHHHhc--CCEEEEecCChhcccHhhcc-------CCcEEEEecccc
Confidence 0248888988 89999888889999998844 566887777 44
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.52 Score=47.80 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 5899999999999999988764 42 68888874
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.31 Score=53.14 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=75.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC-CCh-hhhccccccCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDP-AAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~-~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.||.|+|||+.|...+ ++..+....++. -..++|+|.+- +|.. ... .+..++.....+. .....++.
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l~----~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~-i~~ttD~~ 70 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPALR----DAEIALMDIDP----ERLEESEIVARKLAESLGASAK-ITATTDRR 70 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEECCHH
Confidence 5899999999854443 322222122332 24799999742 1100 000 0111111111110 01246788
Q ss_pred HHhcccCCcEEEEeccCCCC-------------------------------------CCHHHHHHhhhcCCCCCeEEecC
Q 009519 402 EVVRKVKPHVLLGLSGVGGV-------------------------------------FNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~-------------------------------------Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+++++ +|++|=..+++|. .=.|+++.|. ++++..+|+-.|
T Consensus 71 eal~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~-~~~p~a~iin~t 147 (431)
T PRK15076 71 EALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDME-EVCPDALLLNYV 147 (431)
T ss_pred HHhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHH-HHCCCeEEEEcC
Confidence 99988 7887744444321 1246777774 489999999999
Q ss_pred CCCCcccCCHHHHhcccCCcEEEecC-CCCc
Q 009519 445 NPTMNAECTAADAFKHAGENIVFASG-SPFE 474 (533)
Q Consensus 445 NPt~~aE~tpe~A~~wt~Grai~AtG-SPf~ 474 (533)
||.. +..+-++.++. ..+|.+| +|+.
T Consensus 148 NP~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 148 NPMA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred ChHH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 9995 44445556653 4588888 7755
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.6 Score=46.10 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.1
Q ss_pred ceEEEeCchhHHHHHHHHHHH---HHHHHcCCChhhhcCeEEEEeccCccccCCC-CCC---hhhhccccccCCcCC--c
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERK-NLD---PAAAPFAKDPGDFMG--L 394 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~---~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~---~~k~~~A~~~~~~~~--~ 394 (533)
.+|.++|.|..|.+++++|.+ .+.++.|... +=+-++|++|.+...+. +++ ++++.+.... .+.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~-~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS-NWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchh-hcccccc
Confidence 689999999999999999977 3333456432 23556799998876552 222 2222222110 0100 0
Q ss_pred cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
....++.|.++...+||+|-+++ +....+-+.+.+. +..++|.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~-~~~a~~~~~~al~---~G~~VVt 120 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN-DKNAHEWHLEALK---EGKSVVT 120 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC-cHHHHHHHHHHHh---hCCcEEE
Confidence 01137889998778999999985 3444444444443 5778885
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.78 Score=46.20 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=58.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cCCccCCCCHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~~~~~~~~L~e 402 (533)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+ .+.......-....+ .. .....+..+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 64 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAK---ALRERGLVIRSDHGDAVVP-GPVITDPEE 64 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHH---HHHhCCeEEEeCCCeEEec-ceeecCHHH
Confidence 799999999999999998764 3 36888877 21100 010000000000000 00 001234666
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++. +|++|=+. +....+++++.++....++.+|+.+.|.-.
T Consensus 65 ~~~~--~d~vilav--k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 65 LTGP--FDLVILAV--KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ccCC--CCEEEEEe--cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 6555 78665332 233578999988654556678888999864
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.57 Score=48.66 Aligned_cols=92 Identities=16% Similarity=0.330 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..+-+++. .+++|+|-+ .-|.-+|.++... | ..+..++++
T Consensus 132 ~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~----------- 185 (279)
T PRK14178 132 APCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK----------- 185 (279)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-----------
Confidence 456778888888899998888 999999998 8888888888653 2 256667652
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|+.-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 ------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk-------~GavVIDVg 224 (279)
T PRK14178 186 ------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK-------PGATVIDVG 224 (279)
T ss_pred ------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC-------CCcEEEEee
Confidence 0248888988 99999999999999999984 456776554
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.3 Score=46.28 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=76.7
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.||+|+|| |..|..+|.+|... .+.- ..+.++|++-. ..+. -++.+. +......+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~~-----~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPAG-----SELSLYDIAPV-TPGVAVDLSHI-----PTAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCCc-----cEEEEEecCCC-CcceehhhhcC-----CCCceEEE-eCCCCHH
Confidence 38999999 99999999887542 1221 46889997522 1110 022210 10000000 0124678
Q ss_pred HHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHHhccc--CCc
Q 009519 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHA--GEN 464 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A~~wt--~Gr 464 (533)
+++++ .|++|=+.+.+ |. ..+++++.|.+ ++.+.+|+-.|||.. .+=...+.+++++ ...
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~-~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~ 141 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAK-TCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKN 141 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHH
Confidence 88888 89888555542 31 56789999965 899999999999994 0001122233442 234
Q ss_pred EEEecCCCCc
Q 009519 465 IVFASGSPFE 474 (533)
Q Consensus 465 ai~AtGSPf~ 474 (533)
-+|++|. .+
T Consensus 142 rvig~~~-Ld 150 (312)
T PRK05086 142 KLFGVTT-LD 150 (312)
T ss_pred HEEeeec-HH
Confidence 5778875 44
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.49 Score=48.09 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=37.3
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 305 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 305 Agli~Alr~-~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++++++. .+..++. .+++|+|||.+|.+++..|... |. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~~-----g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLDL-----GV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 457777764 4666777 9999999999988888887743 43 479999884
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.46 Score=49.31 Aligned_cols=47 Identities=23% Similarity=0.522 Sum_probs=37.5
Q ss_pred HHHHHHHHhC--CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 306 GLLGTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 306 gli~Alr~~g--~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|+..+|+-.+ ...+. ++++++|||-|+.+|+-.|.++.+ ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~---~~vlilGAGGAarAv~~aL~~~g~-----------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTG---KRVLILGAGGAARAVAFALAEAGA-----------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCC---CEEEEECCcHHHHHHHHHHHHcCC-----------CEEEEEeC
Confidence 4778888755 34445 899999999999999988887643 68999988
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.82 Score=47.58 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
=.-+|-+|++.=++-.+.+++. +++||+|.+ ..|.-+|.||... |. .+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~---------- 190 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKG---KDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF---------- 190 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC----------
Confidence 3456778888888999998888 999999998 8899999988642 32 35555442
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 -------------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 -------------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1237777888 99999999999999999998
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.83 Score=47.58 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++-.+.+++. ++++|+|.+ ..|.-+|.||.. +| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~----------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK----------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-----------
Confidence 456778888889999999888 999999975 678888888864 23 246667541
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 ------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1348888988 99999999999999999996
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.2 Score=42.60 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.-++..+-+++. .+++++|.+ ..|.-+|.||... |. .+.+++++
T Consensus 17 PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------ 69 (160)
T ss_dssp -HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT------------
T ss_pred CCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC------------
Confidence 45777888888888888888 999999998 4888888888763 22 35555553
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~ 429 (533)
..+|.+.+++ +|++|-..++++.++.++||.
T Consensus 70 -----------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 -----------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp -----------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred -----------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1247777877 999999999999999998873
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.51 Score=51.11 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=73.0
Q ss_pred eEEEeCchhHHHHHHH--HHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCccCCCCHH
Q 009519 325 KIVVVGAGSAGLGVLK--MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~--ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~~~~~L~ 401 (533)
||.|+|||+.|.+.+- .|+.. ..+ +-.+++++|.+-=..+ .+...-..++.. ..... .....++.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~----~~~----~g~eV~L~Did~e~l~---~~~~~~~~~~~~~~~~~~-I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKT----PEL----SGSTIALMDIDEERLE---TVEILAKKIVEELGAPLK-IEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcC----CCC----CCCEEEEECCCHHHHH---HHHHHHHHHHHhcCCCeE-EEEeCCHH
Confidence 7999999999888653 22211 111 1247999997421100 010000111111 00000 01246799
Q ss_pred HHhcccCCcEEEEeccCC---------------CCCC---------------------HHHHHHhhhcCCCCCeEEecCC
Q 009519 402 EVVRKVKPHVLLGLSGVG---------------GVFN---------------------EEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~---------------g~Ft---------------------eevv~~Ma~~~~erPIIFaLSN 445 (533)
+++++ +|++|=.-..+ |+|. .++.+.|. +++++.+++=.||
T Consensus 70 eal~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~-~~~p~a~~i~~tN 146 (423)
T cd05297 70 EALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIE-ELCPDAWLLNYAN 146 (423)
T ss_pred HHhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHH-HHCCCCEEEEcCC
Confidence 99988 88877433211 1221 26666664 3778999999999
Q ss_pred CCCcccCCHHHHhcccCCcEEEecC-CCC
Q 009519 446 PTMNAECTAADAFKHAGENIVFASG-SPF 473 (533)
Q Consensus 446 Pt~~aE~tpe~A~~wt~Grai~AtG-SPf 473 (533)
|.. +..+-+++.++ .-++.+| +|+
T Consensus 147 Pv~---i~t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 147 PMA---ELTWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred hHH---HHHHHHHHhCC-CCEEEECCcHH
Confidence 997 55556667776 5678887 443
|
linked to 3D####ucture |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=7.2 Score=42.29 Aligned_cols=227 Identities=15% Similarity=0.055 Sum_probs=127.0
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G--------LSLT 319 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g--------~~l~ 319 (533)
...|+. +|+.--.+..| ..+..--+..++|.|=--- -.|=-+++-+|+.+|-. | ..-.
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 346776 77777777665 3333333345888885322 34445677888777732 1 0113
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... .. ...+..-+ ....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~----~~--~~~~~~g~---------~~~~~ 248 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM----DP--ELEKETGA---------KFEED 248 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc----ch--hhHhhcCc---------eecCC
Confidence 45569999999999999999999764 33 5777887532 00 00000000 01247
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcc
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~p 475 (533)
|.|+++. .|+++=..- .-++|+++.+..|. +.-+++=.|.=.---|-.-.+|.+ .|+.-.|..-=|.+
T Consensus 249 l~ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~l~GAaLDV~~~ 320 (386)
T PLN03139 249 LDAMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK----KGVLIVNNARGAIMDTQAVADACS--SGHIGGYGGDVWYP 320 (386)
T ss_pred HHHHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC----CCeEEEECCCCchhhHHHHHHHHH--cCCceEEEEcCCCC
Confidence 9999988 898773321 12789999999993 566777666533311222223333 66655555443333
Q ss_pred eecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
-..+ ....--+..|+.+-|=++-....++ ..|...+++-|-.....++
T Consensus 321 EPlp--~d~pL~~~pNvilTPHiag~t~~~~-----~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 321 QPAP--KDHPWRYMPNHAMTPHISGTTIDAQ-----LRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred CCCC--CCChhhcCCCeEEcccccccCHHHH-----HHHHHHHHHHHHHHHcCCC
Confidence 2221 1111123569999998874333322 2334444454544444443
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.7 Score=44.19 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . .....++. ...+
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~-----~~~~~~~~---------~~~~ 193 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N-----AKAATYVD---------YKDT 193 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c-----HhHHhhcc---------ccCC
Confidence 35559999999999999999999532 243 688888642 0 00111111 1247
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCC--
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPF-- 473 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf-- 473 (533)
|.|+++. .|+++=.-- ..++|+++.++.|. +..++.=.|.=...-|..-.+|.+ .|+.-.|.=-=|
T Consensus 194 l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk----~gailIN~sRG~~vd~~aL~~aL~--~g~i~gaalDV~~~ 265 (332)
T PRK08605 194 IEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK----KGAVFVNCARGSLVDTKALLDALD--NGLIKGAALDTYEF 265 (332)
T ss_pred HHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC----CCcEEEECCCCcccCHHHHHHHHH--hCCeeEEEEecccC
Confidence 9999988 899884421 23678888888883 577888777643322222233333 455322211111
Q ss_pred -cceecCC--Cee--e----ecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCC
Q 009519 474 -ENVDLGN--GKI--G----HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCN 528 (533)
Q Consensus 474 -~pv~~~~--G~~--~----~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~ 528 (533)
||+--.+ ++. . .--+..|+.+=|=+|-....+ -..|...+++.+-+....
T Consensus 266 Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~-----~~~~~~~~~~n~~~~~~g 324 (332)
T PRK08605 266 ERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAA-----VKNLIVDALDATLEVLQT 324 (332)
T ss_pred CCCccccccccccccchhhHHHhcCCCEEECCcccccHHHH-----HHHHHHHHHHHHHHHHcC
Confidence 1110000 000 0 012457899999888544333 345666666666555443
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=89.28 E-value=2.6 Score=43.30 Aligned_cols=95 Identities=17% Similarity=0.290 Sum_probs=60.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||-|+|.|..|..+|..|.+. |. ++.+.|++ . +... .++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g~-------~V~~~dr~----~--~~~~----~l~~~g~-----~~~~s~~~~~ 54 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----GH-------DCVGYDHD----Q--DAVK----AMKEDRT-----TGVANLRELS 54 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----CC-------EEEEEECC----H--HHHH----HHHHcCC-----cccCCHHHHH
Confidence 699999999999999988753 42 56667752 1 1111 1221110 1124566655
Q ss_pred ccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+.. ++|++|=+ ...+ ..+++++.+++...+..||+-+||..+
T Consensus 55 ~~~~~~dvIi~~-vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 55 QRLSAPRVVWVM-VPHG-IVDAVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhcCCCCEEEEE-cCch-HHHHHHHHHHhhCCCCCEEEECCCCCc
Confidence 432 48888743 3345 889999988764567789999999765
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.7 Score=45.39 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
..|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ ++..+|.. +..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~- 151 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD- 151 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc-
Confidence 45555788888888888877777 9999999999999999999765 43 68888852 110
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEE---ecc-----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG---LSG-----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG---~S~-----~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
. ... ....+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 152 ~-------~~~------~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk----~gailIN~aR 208 (378)
T PRK15438 152 R-------GDE------GDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK----PGAILINACR 208 (378)
T ss_pred c-------ccc------cccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC----CCcEEEECCC
Confidence 0 000 012468888877 788771 111 23788888888883 5778776664
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.6 Score=44.77 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=58.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|.|..|..+|..|... |. +++++|+.. +....++.... ....++.|++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----------~~~~~~~~~g~-----~~~~~~~e~~ 54 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----------EAVEALAEEGA-----TGADSLEELV 54 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----------HHHHHHHHCCC-----eecCCHHHHH
Confidence 799999999999999999763 42 577777741 11112221110 1234677777
Q ss_pred ccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+.. ++|++|=+- ..+...++++..+.+...+..||+-+|+-.+
T Consensus 55 ~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 55 AKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred hhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 765 367655332 2344666676655443456778888877554
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.1 Score=46.80 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..+-+++. .+++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 138 ~PcTp~avi~lL~~~~i~l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~----------- 191 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR----------- 191 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-----------
Confidence 456777888888889998888 99999999 99999999999763 43 34444221
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+++++ +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 192 ------------------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik-------~GavVIDvg 230 (284)
T PRK14179 192 ------------------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK-------EGAVVIDVG 230 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCccccCCHHHcc-------CCcEEEEec
Confidence 1248888988 99999999999999998754 456776555
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.92 E-value=9.1 Score=42.02 Aligned_cols=199 Identities=19% Similarity=0.164 Sum_probs=129.1
Q ss_pred cCCChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCc--hHHHHHHHHhccC-----cee------c----cCcchhHHH
Q 009519 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF-----CMF------N----DDIQGTAGV 302 (533)
Q Consensus 241 ~R~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~~-----~~F------n----DDiQGTaaV 302 (533)
+..+..|-.+|...|++++.+.- |+.-|-=+|++.. .---+.+.|+.-. +|| . +----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44778899999999999999888 8899999999863 2233567776432 111 1 222223332
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh
Q 009519 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (533)
Q Consensus 303 ~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~ 382 (533)
+.-+.-.|++..|.+|+. .||.|-|.|.+|.-.|+.+.+.+. |=+-+=|++|.|++. +.|+..+.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~GA-----------kvva~sds~g~i~~~-~Gld~~~l 254 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHELGA-----------KVVAVSDSKGGIYDE-DGLDVEAL 254 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHcCC-----------EEEEEEcCCCceecC-CCCCHHHH
Confidence 233333777788887888 999999999999999999876433 457778999988886 34553332
Q ss_pred c-----cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHH
Q 009519 383 P-----FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAAD 456 (533)
Q Consensus 383 ~-----~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~ 456 (533)
. +.+-... .+ ....+= |.+-.+..||||=+.. .+.+|++-++.+.+ + +|.=-+| |+. ..+++
T Consensus 255 ~~~~~~~~~v~~~-~g-a~~i~~-~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k--~V~EgAN~P~t---~eA~~ 322 (411)
T COG0334 255 LELKERRGSVAEY-AG-AEYITN-EELLEVDCDILIPCAL-ENVITEDNADQLKA---K--IVVEGANGPTT---PEADE 322 (411)
T ss_pred HHHhhhhhhHHhh-cC-ceEccc-cccccccCcEEccccc-ccccchhhHHHhhh---c--EEEeccCCCCC---HHHHH
Confidence 2 1111100 00 001111 2333467899997765 79999999999853 2 8888888 775 45556
Q ss_pred HhcccCCcEEEe
Q 009519 457 AFKHAGENIVFA 468 (533)
Q Consensus 457 A~~wt~Grai~A 468 (533)
.+. ..| ++|+
T Consensus 323 i~~-erG-Il~~ 332 (411)
T COG0334 323 ILL-ERG-ILVV 332 (411)
T ss_pred HHH-HCC-CEEc
Confidence 655 334 4443
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.1 Score=45.04 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=74.9
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc--cccC-CCCCChhhhccccccCCcCCccCCCCH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL--i~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
||.|.|| |..|..+|..|+. .|+-.++-...+.|+|.+.- ..++ .-+|.+...++.+.. . ...+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 8999999 9999999987764 34432222337999998642 1111 123444332332211 1 12457
Q ss_pred HHHhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 401 LEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~-~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++++ .|++|=+.+. +|- +-+++++.|++ + ++.-||+-.|||.. +..--+++++
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~s 140 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK-VAKPTVKVLVVGNPAN---TNALIALKNA 140 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHH-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 888988 8988844443 332 23567777754 7 48999999999984 6666677765
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.98 Score=45.83 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=59.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh--hhccccccCCcC-CccCCCCHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA--AAPFAKDPGDFM-GLREGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~--k~~~A~~~~~~~-~~~~~~~L~ 401 (533)
||.|+|+|..|..+|..|.+. | .+++++|+..-..+ .+... ...+... ..+. +.....++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA---EINADRENPRYLPG-IKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH---HHHHcCcccccCCC-CcCCCCeEEeCCHH
Confidence 799999999999999998763 3 25778887431110 00000 0000000 0000 001124677
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++++. +|++| ++. +....+++++.+++...+..+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v-~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAV-PSQALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeC-CHHHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 88876 78766 333 234678888877643355678888887443
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.1 Score=46.65 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..+-+++. +++||+|.+ ..|.-+|.||..... ..| ..+..|+++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t---------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT---------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc----------
Confidence 456778888889999998888 999999975 578888888864210 012 2466665421
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+|.+.+++ +|++|+.-+.|+.|++++|+ +.-+|.-.+
T Consensus 196 -------------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk-------~GavVIDVG 233 (286)
T PRK14184 196 -------------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK-------PGAVVVDVG 233 (286)
T ss_pred -------------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC-------CCCEEEEee
Confidence 248888988 99999999999999999995 445665443
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.34 E-value=0.78 Score=47.12 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=40.6
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+.=||=|-. |++.+++..+.+. . .+++++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 100 l~G~NTD~~--------Gf~~~L~~~~~~~-~---~~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYI--------AIAKLLASYQVPP-D---LVVALRGSGGMAKAVAAALRDA-----GF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCC-C---CeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEeCC
Confidence 444555544 4778887666543 4 5999999999999998887654 44 579999873
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.14 E-value=2 Score=43.99 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|.|..|..+|+.|... |. +++++|++. ++ . ..++.... ....+++|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~--~----~~~~~~g~-----~~~~s~~~~~ 54 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA--V----DVAGKLGI-----TARHSLEELV 54 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH--H----HHHHHCCC-----eecCCHHHHH
Confidence 689999999999999998753 43 577777631 11 1 11211110 1235688888
Q ss_pred cccC-CcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKVK-PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~vk-ptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+..+ +|++|= +.......++++..+.....+..+|.=+|+-.+
T Consensus 55 ~~~~~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 55 SKLEAPRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HhCCCCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 7643 566653 222344667777666443456778888887555
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=8.5 Score=40.24 Aligned_cols=196 Identities=17% Similarity=0.151 Sum_probs=111.2
Q ss_pred cCceeccC-c--chhHHHHHHHHHHHHHHh---------CC------------CCCCCCCceEEEeCchhHHHHHHHHHH
Q 009519 288 RFCMFNDD-I--QGTAGVALAGLLGTVRAQ---------GL------------SLTDFADQKIVVVGAGSAGLGVLKMAV 343 (533)
Q Consensus 288 ~~~~FnDD-i--QGTaaV~LAgli~Alr~~---------g~------------~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (533)
-+.+.|-- . +.+|=-+++.+++..|-. |+ ...+|.++++.|+|.|..|..+|+++.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 36555532 2 345556677777766632 10 113566699999999999999999986
Q ss_pred HHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe----ccCC
Q 009519 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVG 419 (533)
Q Consensus 344 ~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~~ 419 (533)
.. |+ +|+.+|+.+ .+ . .+ ...+|.|+++. .|+++=. ....
T Consensus 169 ~f-----gm-------~V~~~~~~~-----~~----~---~~----------~~~~l~ell~~--sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 169 AF-----GM-------RVLIGQLPG-----RP----A---RP----------DRLPLDELLPQ--VDALTLHCPLTEHTR 212 (317)
T ss_pred hC-----CC-------EEEEECCCC-----Cc----c---cc----------cccCHHHHHHh--CCEEEECCCCChHHh
Confidence 54 33 677777642 10 0 00 12469999988 8998732 1224
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhh
Q 009519 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499 (533)
Q Consensus 420 g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (533)
|.|+++.+..|. +..++.=.|.=.---|-.--+|++ +|+.--|.=-=|.+-..+.+....--+..|+++-|=++
T Consensus 213 ~li~~~~~~~mk----~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia 286 (317)
T PRK06487 213 HLIGARELALMK----PGALLINTARGGLVDEQALADALR--SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSA 286 (317)
T ss_pred cCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccc
Confidence 899999999993 677877666533311222233433 66654342212211111111111101356899999887
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 500 LGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 500 lG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
-.... -.+.|...+++.|.+....++
T Consensus 287 ~~t~e-----~~~~~~~~~~~ni~~~~~g~~ 312 (317)
T PRK06487 287 WGSRE-----ARQRIVGQLAENARAFFAGKP 312 (317)
T ss_pred cCCHH-----HHHHHHHHHHHHHHHHHcCCC
Confidence 33322 234555556666655554444
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.8 Score=45.43 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.=++..+.+++. +++||+|.+ ..|.-+|.||.+.+. +.| ..+.++.++
T Consensus 140 PcTp~ail~ll~~y~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~------------ 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA------------ 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC------------
Confidence 35666778888888988888 999999985 578888888875332 122 245555431
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|+.-+.++.|++++|+ +.-+|.-.+
T Consensus 197 -----------------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk-------~GavVIDVg 235 (295)
T PRK14174 197 -----------------TKDIPSYTRQ--ADILIAAIGKARFITADMVK-------PGAVVIDVG 235 (295)
T ss_pred -----------------chhHHHHHHh--CCEEEEecCccCccCHHHcC-------CCCEEEEee
Confidence 1348888988 99999999999999999995 455665443
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.23 Score=55.28 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=28.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~ 360 (533)
-+|+|+|||-||+..|++|.+++. .+..-|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 699999999999999999999865 2455677765
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.46 Score=46.89 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+. .||+|+|+|..|..||+.|..+ |+ .+|.++|.+
T Consensus 25 ~L~~---~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 25 KLKK---AKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHhC---CCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 4555 9999999999999999999875 44 689999986
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.47 Score=46.24 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|.+ .||+|+|+|..|.-+|+.|..+.+ ++|+++|.+
T Consensus 17 ~kl~~---~~VlviG~GglGs~ia~~La~~Gv-----------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLN---SHVLIIGAGGLGSPAALYLAGAGV-----------GTIVIVDDD 54 (202)
T ss_pred HHhcC---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEecCC
Confidence 34556 999999999999999999987644 689999986
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=9.8 Score=41.26 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=115.2
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G--------LSLT 319 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g--------~~l~ 319 (533)
...|+. .|+.-=.+..| ..+-.--+..+.+.|-.-- ..|=-+++-+|+.+|-. | ..-.
T Consensus 110 ~~~p~LK~I~~~g~G~D~-id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 188 (385)
T PRK07574 110 AKAPNLKLAITAGIGSDH-VDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSY 188 (385)
T ss_pred hhCCCCcEEEECCccccc-ccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccce
Confidence 345776 67765555554 2222222234777775332 34444788888877632 1 0123
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..++|.|+|.|..|..+|+.+... |+ +++.+|+... .. +....+ . .....+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~----~~~~~~--g------~~~~~~ 241 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE----EVEQEL--G------LTYHVS 241 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch----hhHhhc--C------ceecCC
Confidence 45559999999999999999998765 33 6888887432 00 000011 0 011357
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcc
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~p 475 (533)
|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|..-.+|++ .|+.--|..-=|.+
T Consensus 242 l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~ 313 (385)
T PRK07574 242 FDSLVSV--CDVVTIHCPLHPETEHLFDADVLSRMK----RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFP 313 (385)
T ss_pred HHHHhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC----CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCC
Confidence 9999988 899873321 13789999999994 577888777644322333334444 66655454322222
Q ss_pred eecCCCeeeecccccceeechhhhH
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
-..+... .--+..|+.+-|=++-
T Consensus 314 EPlp~d~--pL~~~pNvilTPHiag 336 (385)
T PRK07574 314 QPAPADH--PWRTMPRNGMTPHISG 336 (385)
T ss_pred CCCCCCC--hHHhCCCeEECCcccc
Confidence 1111011 1123458888887763
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.74 E-value=3.2 Score=43.87 Aligned_cols=97 Identities=27% Similarity=0.289 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE
Q 009519 301 GVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF 362 (533)
Q Consensus 301 aV~LAgli~Alr------------------~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~ 362 (533)
=-+++.+++..| ..|..|.+ +++-|+|.|..|..+|+.+....+ ++.
T Consensus 105 E~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g---kTvGIiG~G~IG~~va~~l~afgm------------~v~ 169 (324)
T COG0111 105 ELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG---KTVGIIGLGRIGRAVAKRLKAFGM------------KVI 169 (324)
T ss_pred HHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC---CEEEEECCCHHHHHHHHHHHhCCC------------eEE
Confidence 335667777666 34455555 999999999999999999987644 688
Q ss_pred EEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHh
Q 009519 363 LLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAM 430 (533)
Q Consensus 363 lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~M 430 (533)
.+|.. ..++ ....- +.....+|.|.++. .|++.-.- ..-|.++++-+..|
T Consensus 170 ~~d~~----~~~~-----~~~~~-------~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 170 GYDPY----SPRE-----RAGVD-------GVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred EECCC----Cchh-----hhccc-------cceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 88872 1111 00000 00123579999988 89988542 12389999999999
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=87.73 E-value=1 Score=46.14 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=71.5
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cC-CccCCCCHHH
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FM-GLREGASLLE 402 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~-~~~~~~~L~e 402 (533)
|.|+|||..|.++|..++. .|+. .++++|.+ .++ +......+.+.... .. ......+. +
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~----e~~--~~g~~~dl~~~~~~~~~~~~I~~t~d~-~ 62 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIV----EGL--PQGKALDISQAAPILGSDTKVTGTNDY-E 62 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCC----CcH--HHHHHHHHHHhhhhcCCCeEEEEcCCH-H
Confidence 5799999999999987764 2431 69999985 111 11000111110000 00 00112444 4
Q ss_pred HhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCc---E
Q 009519 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGEN---I 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Gr---a 465 (533)
+++. +|++|=+.+. +|- +-+++++.|.+ +++..+|+-.|||.. .....+.+++ |. -
T Consensus 63 ~l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~-~~p~~~iIv~sNP~d---i~t~~~~~~s-~~~~~r 135 (300)
T cd01339 63 DIAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKK-YAPNAIVIVVTNPLD---VMTYVAYKAS-GFPRNR 135 (300)
T ss_pred HhCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCHHH
Confidence 5777 8988833322 221 23477888854 888889999999995 5555666665 32 5
Q ss_pred EEecCCCC
Q 009519 466 VFASGSPF 473 (533)
Q Consensus 466 i~AtGSPf 473 (533)
+|++|+-.
T Consensus 136 viGlgt~l 143 (300)
T cd01339 136 VIGMAGVL 143 (300)
T ss_pred EEEecchH
Confidence 88988544
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.7 Score=45.28 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..+.+++. ++++|+|-+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~----------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEG---KEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK----------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 456778888888999999988 999999975 578888888864 232 46677642
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|++|+|+
T Consensus 192 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ------------------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888888 99999999999999999988
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.64 E-value=1.7 Score=45.40 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.=++-.+-+++. +++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~------------ 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK------------ 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 34567777778888888888 999999975 678888888864 23 246677642
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 193 -----------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 -----------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred -----------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1347888888 99999999999999999998
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.8 Score=46.08 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=79.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|.+-=...+. -+|.+.. +|-... .. ....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~-~i---~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDVNPDKLRGEMLDLQHAA-AFLPRT-KI---LASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCCchhhHHHHHHHhhh-hcCCCC-EE---EeCCCHHH
Confidence 399999999999999998764 3553 4799999732111111 1333322 222211 11 11134554
Q ss_pred HhcccCCcEEEEeccC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcE
Q 009519 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Fte------------evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Gra 465 (533)
+++ +|++|=+.+. +| -|+ ++++.|.+ ++..-+|+-.|||.. ....-+++++. =+-
T Consensus 103 -~~d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~-~~p~~ivivvtNPvd---v~t~~~~k~sg~p~~r 174 (350)
T PLN02602 103 -TAG--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAK-YSPDTILLIVSNPVD---VLTYVAWKLSGFPANR 174 (350)
T ss_pred -hCC--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCchH---HHHHHHHHHhCCCHHH
Confidence 777 8998844443 34 233 66777754 899999999999995 66667777762 145
Q ss_pred EEecCCCCcc
Q 009519 466 VFASGSPFEN 475 (533)
Q Consensus 466 i~AtGSPf~p 475 (533)
+|++|.-.+.
T Consensus 175 viG~gt~LDs 184 (350)
T PLN02602 175 VIGSGTNLDS 184 (350)
T ss_pred EEeecchHHH
Confidence 7888755443
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.49 Score=46.77 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=32.1
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|.+ .||+|+|+|+.|..+|+.|+.+++ ++|.++|.+
T Consensus 18 ~L~~---~~VlivG~GglGs~va~~La~~Gv-----------g~i~lvD~D 54 (228)
T cd00757 18 KLKN---ARVLVVGAGGLGSPAAEYLAAAGV-----------GKLGLVDDD 54 (228)
T ss_pred HHhC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCC
Confidence 4555 999999999999999999987644 689999987
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=87.48 E-value=0.69 Score=50.69 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=75.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHH-cCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccc-cCCcCCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~-~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~-~~~~~~~~~~~~L 400 (533)
.||+|+||||+ -+..|+..+... ..++. ..|+|+|-+. +|- -+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~----~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~-v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPL----RELVLYDIDA----ERQEKVAEAVKILFKENYPEIK-FVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCC----CEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeE-EEEECCH
Confidence 38999999996 444444444422 34442 6899999753 231 112212222222 11111 0124679
Q ss_pred HHHhcccCCcEEE---------------------Eec-----cCCCC--------CCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLL---------------------GLS-----GVGGV--------FNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLI---------------------G~S-----~~~g~--------Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.||+++ +|.+| |+- +.+|. +-.++++.|. +.|+..+++-.|||
T Consensus 69 ~eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~-~~~pda~lin~tNP 145 (437)
T cd05298 69 EEAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIE-KYSPDAWILNYSNP 145 (437)
T ss_pred HHHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEEecCc
Confidence 999999 88877 221 12222 2357888885 48999999999999
Q ss_pred CCcccCCHHHHhc-ccCCcEEEecCCCCc
Q 009519 447 TMNAECTAADAFK-HAGENIVFASGSPFE 474 (533)
Q Consensus 447 t~~aE~tpe~A~~-wt~Grai~AtGSPf~ 474 (533)
.. .+|- -+++ ++.-|+|=-+-+|+.
T Consensus 146 ~~--~vt~-~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 146 AA--IVAE-ALRRLFPNARILNICDMPIA 171 (437)
T ss_pred HH--HHHH-HHHHHCCCCCEEEECCcHHH
Confidence 96 4443 2333 344455444555544
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=87.14 E-value=3.6 Score=43.02 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=63.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~~~~~L~e 402 (533)
.+++|+|+|..|..++..+... .++ ++|+++++. ..+ .......+.+. .-++ ....++++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~--a~~~a~~~~~~~g~~v---~~~~~~~~ 190 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK--AEALALQLSSLLGIDV---TAATDPRA 190 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH--HHHHHHHHHhhcCceE---EEeCCHHH
Confidence 6899999999999998877653 243 578888772 111 12222222111 0011 12367999
Q ss_pred HhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHH
Q 009519 403 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A 457 (533)
+++. .|++|-+++. .-.|+.++++.- -.|.++.--++ +.|+.|+-.
T Consensus 191 av~~--aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 191 AMSG--ADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred Hhcc--CCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCceecCHHHH
Confidence 9987 9999977643 346777776632 24444543232 358888763
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.8 Score=45.23 Aligned_cols=83 Identities=16% Similarity=0.351 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..|-+++. +++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~----------- 190 (284)
T PRK14170 137 VPCTPAGIIELIKSTGTQIEG---KRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR----------- 190 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 456677888888889998888 999999975 578888888764 23 246666442
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 ------------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347888888 99999999999999999998
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.2 Score=49.00 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCceeeeecCCCchHHHHHHHHhcc-Cc--eeccCcchhHHHHHHHHHHHHHHh--------CCCCCCCC
Q 009519 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFA 322 (533)
Q Consensus 254 efv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~-~~--~FnDDiQGTaaV~LAgli~Alr~~--------g~~l~dl~ 322 (533)
+..+-+....|++- .|=+....-.++.++|.-. +| ++||+..+.+....+-+++.++.. ...-.+
T Consensus 137 ~~~~~~a~~~p~i~--~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 212 (515)
T TIGR03140 137 QALNQMALLNPNIS--HTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP-- 212 (515)
T ss_pred HHHHHHHHhCCCce--EEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC--
Confidence 33444555567544 3336667778888999765 44 358888888888888888877654 112234
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+++|+|||+||+..|..+.+.
T Consensus 213 -~dVvIIGgGpAGl~AA~~la~~ 234 (515)
T TIGR03140 213 -YDVLVVGGGPAGAAAAIYAARK 234 (515)
T ss_pred -CCEEEECCCHHHHHHHHHHHHC
Confidence 7899999999999999887653
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.03 E-value=3.6 Score=41.84 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999988764 43 68888874
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.55 Score=47.23 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ ++|.++|.+
T Consensus 20 ~~L~~---~~VlvvG~GglGs~va~~La~~Gv-----------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKA---SRVLIVGLGGLGCAASQYLAAAGV-----------GNLTLLDFD 57 (240)
T ss_pred HHHhC---CcEEEECcCHHHHHHHHHHHHcCC-----------CEEEEEeCC
Confidence 34566 999999999999999999987644 689999987
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.95 E-value=1.3 Score=44.44 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcC-CccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM-GLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~-~~~~~~~L~e~ 403 (533)
||.|+|+|+.|..+|..|.+. | .+++++|+++=-.. .+......+ .. .+.. ......++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~g~~~-~~-~~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLD---ALNENGLRL-ED-GEITVPVLAADDPAEL 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHH---HHHHcCCcc-cC-CceeecccCCCChhHc
Confidence 799999999999999988763 3 36888887431110 010000000 00 0000 00012345554
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+. +|++| ++.. .--++++++.++....++-+|+.+.|...
T Consensus 65 -~~--~d~vi-la~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 -GP--QDLVI-LAVK-AYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred -CC--CCEEE-Eecc-cccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 44 78877 4432 33568999999754455556777999754
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.93 E-value=3 Score=42.55 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+||.|+|+|..|.+||..+... |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5899999999999999988653 43 5888886
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.73 E-value=14 Score=38.53 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=113.7
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------C----C--------
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G----L-------- 316 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g----~-------- 316 (533)
..|+. .|+.-=.+..| ..+-.--+..+.+.|--- ..+|=-+++-+++..|-. | .
T Consensus 60 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~ 138 (311)
T PRK08410 60 QLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISR 138 (311)
T ss_pred hCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCc
Confidence 45765 77766666555 333322234577777422 346666788888887743 1 0
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
+..+|.++++.|+|-|..|..+|+++... |+ +|+.+|+.+- .. ...+ .
T Consensus 139 ~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~~---~~------~~~~-----------~ 186 (311)
T PRK08410 139 PLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSGK---NK------NEEY-----------E 186 (311)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCcc---cc------ccCc-----------e
Confidence 12356669999999999999999998654 43 6888888421 00 0001 1
Q ss_pred CCCHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh-cc-cCCcEEEecC
Q 009519 397 GASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF-KH-AGENIVFASG 470 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~-~w-t~Grai~AtG 470 (533)
..+|.|+++. .|+++=. ...-+.|+++.++.|. +..++.=.|.= ++-=|+|+ ++ .+|+.- |.=
T Consensus 187 ~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk----~~a~lIN~aRG----~vVDe~AL~~AL~~g~i~-AaL 255 (311)
T PRK08410 187 RVSLEELLKT--SDIISIHAPLNEKTKNLIAYKELKLLK----DGAILINVGRG----GIVNEKDLAKALDEKDIY-AGL 255 (311)
T ss_pred eecHHHHhhc--CCEEEEeCCCCchhhcccCHHHHHhCC----CCeEEEECCCc----cccCHHHHHHHHHcCCeE-EEE
Confidence 2469999988 8988732 1224899999999993 67787766653 33333333 21 366644 321
Q ss_pred CCCcceecCCCeeeec-ccccceeechhhhH
Q 009519 471 SPFENVDLGNGKIGHV-NQANNMYLFPGIGL 500 (533)
Q Consensus 471 SPf~pv~~~~G~~~~p-~Q~NN~~iFPGigl 500 (533)
-=|++-..+....+.. -...|+.+-|=+|-
T Consensus 256 DV~~~EP~~~~~pL~~~~~~~NvilTPH~a~ 286 (311)
T PRK08410 256 DVLEKEPMEKNHPLLSIKNKEKLLITPHIAW 286 (311)
T ss_pred ecCCCCCCCCCChhhccCCCCCEEECCcccc
Confidence 1111111110110110 01258999998874
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=0.58 Score=49.43 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ .+|.++|.+=
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDY 58 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCc
Confidence 45666 999999999999999999988755 6899999974
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.34 Score=50.42 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=76.8
Q ss_pred HHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 009519 279 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (533)
Q Consensus 279 f~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~ 358 (533)
|..-++|..++..|..+-| ++|++ .||+|+|+|..|.-+|..|+.+++
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 5666777766555543322 34556 999999999999999999998765
Q ss_pred CeEEEEeccCccccC--CC------CCChhhhcccc----ccCCc------CCccCCCCHHHHhcccCCcEEEEeccCCC
Q 009519 359 NKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGDF------MGLREGASLLEVVRKVKPHVLLGLSGVGG 420 (533)
Q Consensus 359 ~~i~lvD~~GLi~~~--r~------~l~~~k~~~A~----~~~~~------~~~~~~~~L~e~V~~vkptvLIG~S~~~g 420 (533)
.+|.++|.+=+=..+ |. ++-..|.+-|+ .-++. ...-...++.+.+++ .|++|=.+ .
T Consensus 52 G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~---D 126 (287)
T PRK08223 52 GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGL---D 126 (287)
T ss_pred CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECC---C
Confidence 689999987432221 21 12223332222 11110 000022457788877 78887333 3
Q ss_pred CC---CHHHHHHhhhcCCCCCeEEecC
Q 009519 421 VF---NEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 421 ~F---teevv~~Ma~~~~erPIIFaLS 444 (533)
-| +.-+|-..|. ....|.|.+-+
T Consensus 127 ~~~~~~r~~ln~~c~-~~~iP~V~~~~ 152 (287)
T PRK08223 127 FFEFDARRLVFAACQ-QRGIPALTAAP 152 (287)
T ss_pred CCcHHHHHHHHHHHH-HcCCCEEEEec
Confidence 33 4566666654 55689998744
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.32 E-value=0.29 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||||+|||.||++.|..|++.
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~ 43 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLEN 43 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHh
Confidence 7999999999999999999853
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=2.1 Score=44.56 Aligned_cols=130 Identities=15% Similarity=0.246 Sum_probs=86.4
Q ss_pred HHHHHHHHHhC--CCc---eeeee---cCCCchHHHHHHHHhcc--C------ceeccCcchhHHHHHHHHHHHHHHhCC
Q 009519 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 253 defv~av~~~~--P~~---~I~~E---Df~~~~af~iL~ryr~~--~------~~FnDDiQGTaaV~LAgli~Alr~~g~ 316 (533)
+||++.++++- |++ ++|+= .+.....++.+.-.+|- + ..|.++..+=.-+|-+|++.=++..+-
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777663 543 55653 44333333333332321 1 223332234456678888888899999
Q ss_pred CCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+++. ++++|+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 154 ~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~---------------------------- 190 (282)
T PRK14166 154 DLEG---KDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK---------------------------- 190 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC----------------------------
Confidence 9888 999999975 578888888864 23 246666553
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 191 -T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 -TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1237888888 99999999999999999888
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=6.4 Score=41.48 Aligned_cols=182 Identities=11% Similarity=0.127 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 009519 298 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~---------g-----~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i 361 (533)
.+|=-+++-+++.+|-. | . .-.+|...+|.|+|.|..|..+|+.+... |+ ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 34555677777776632 1 0 01245559999999999999999988653 43 68
Q ss_pred EEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe-ccC---CCCCCHHHHHHhhhcCCCC
Q 009519 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-SGV---GGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S~~---~g~Fteevv~~Ma~~~~er 437 (533)
+.+|+.- .. ...+.+ ...+|.|+++. .|+++=. ... -+.|.++++..|. +.
T Consensus 173 ~~~d~~~----~~------~~~~~~---------~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk----~g 227 (330)
T PRK12480 173 TAYDAYP----NK------DLDFLT---------YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK----KG 227 (330)
T ss_pred EEEeCCh----hH------hhhhhh---------ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC----CC
Confidence 8888641 10 001111 12469999988 8887632 221 1678888888883 56
Q ss_pred CeEEecCCCCCcccCCHHHHhcc-cCCcEEEecCCCCc--ceecC--------CCeee-ecccccceeechhhhHHHHHh
Q 009519 438 PAIFAMSNPTMNAECTAADAFKH-AGENIVFASGSPFE--NVDLG--------NGKIG-HVNQANNMYLFPGIGLGTLLS 505 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~w-t~Grai~AtGSPf~--pv~~~--------~G~~~-~p~Q~NN~~iFPGiglG~l~~ 505 (533)
.++.-.|.-. -+.-++.+++ .+|+.-.|.=-=|+ |..+. +...+ .--+..|+.+=|=++-....+
T Consensus 228 avlIN~aRG~---~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~ 304 (330)
T PRK12480 228 AILVNAARGA---VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEA 304 (330)
T ss_pred cEEEEcCCcc---ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHH
Confidence 6777666533 2344333333 25654433211121 11000 00000 013456999999888655444
Q ss_pred CCcccCHHHHHHHHHHHhc
Q 009519 506 GARFITDGMLQQAAEWYVC 524 (533)
Q Consensus 506 ~a~~Itd~M~~aAA~alA~ 524 (533)
. ..|...+++.+-+
T Consensus 305 ~-----~~~~~~~~~n~~~ 318 (330)
T PRK12480 305 V-----QNLVEGGLNAALS 318 (330)
T ss_pred H-----HHHHHHHHHHHHH
Confidence 2 3444444444433
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=85.97 E-value=4.7 Score=44.98 Aligned_cols=105 Identities=13% Similarity=0.030 Sum_probs=58.3
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccc-----CCHHHHhcccCCcEEE-ecCCCCcc
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAE-----CTAADAFKHAGENIVF-ASGSPFEN 475 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE-----~tpe~A~~wt~Grai~-AtGSPf~p 475 (533)
+..+|+++|..++. ..=..++-+.+. .-+|=+-+-.-||.+ +.| .|.+++++.. ..++ .-| -.|
T Consensus 108 ~~~~~~~IlasnTS-tl~i~~iA~~~~--~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~--~~l~~~lg--k~p 180 (503)
T TIGR02279 108 ELCPADTIIASNTS-SLSITAIAAGLA--RPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQL--YETALAWG--KQP 180 (503)
T ss_pred hhCCCCeEEEECCC-CCCHHHHHHhcC--cccceEEEeccCccccCceEEEeCCCCCCHHHHHHH--HHHHHHcC--Cee
Confidence 34578888865542 222223444442 234556666777654 222 2233333221 0010 111 122
Q ss_pred eecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
|.. | ..||.++|-+.+|.+.-+..+...-.++.+.+.++.+
T Consensus 181 v~v--~--d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 181 VHC--H--STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred eEe--C--CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 1 3578899999999999998888887788888877765
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.96 E-value=17 Score=38.28 Aligned_cols=202 Identities=23% Similarity=0.190 Sum_probs=115.8
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------CC------------
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------ 316 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~------------ 316 (533)
..|+. .|+.-=.+..| ..+..--+..+++.|--- +..|=-+++.+++..|-. |.
T Consensus 64 ~~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 142 (333)
T PRK13243 64 AAPRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM 142 (333)
T ss_pred hCCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc
Confidence 44665 67766666655 222222234577777422 234555688888877752 11
Q ss_pred -CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
.-.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. .+ . ....+. .
T Consensus 143 ~~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~~-~--~~~~~~---------~ 193 (333)
T PRK13243 143 FLGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----KP-E--AEKELG---------A 193 (333)
T ss_pred ccccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----Ch-h--hHHHcC---------C
Confidence 01356669999999999999999998754 43 578888731 11 0 001110 0
Q ss_pred CCCCHHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCC
Q 009519 396 EGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS 471 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGS 471 (533)
...+|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|-.-.+|.+ +|+.-.|.=-
T Consensus 194 ~~~~l~ell~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk----~ga~lIN~aRg~~vd~~aL~~aL~--~g~i~gAaLD 265 (333)
T PRK13243 194 EYRPLEELLRE--SDFVSLHVPLTKETYHMINEERLKLMK----PTAILVNTARGKVVDTKALVKALK--EGWIAGAGLD 265 (333)
T ss_pred EecCHHHHHhh--CCEEEEeCCCChHHhhccCHHHHhcCC----CCeEEEECcCchhcCHHHHHHHHH--cCCeEEEEec
Confidence 12469999988 898774321 13789999999993 677888777544322222233333 6664433211
Q ss_pred CCcceecCCCeeeecccccceeechhhhHHHHH
Q 009519 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 504 (533)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~ 504 (533)
=|++-..+ +. .--+..|+++-|=++-....
T Consensus 266 V~~~EP~~-~~--pL~~~~nvilTPHia~~t~e 295 (333)
T PRK13243 266 VFEEEPYY-NE--ELFSLKNVVLAPHIGSATFE 295 (333)
T ss_pred cCCCCCCC-Cc--hhhcCCCEEECCcCCcCHHH
Confidence 12111111 11 12245689999998854433
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=85.93 E-value=4.1 Score=42.40 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=74.6
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC---ccccCCCCCChhhhcccccc-CCcCCccCCCC
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDP-GDFMGLREGAS 399 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G---Li~~~r~~l~~~k~~~A~~~-~~~~~~~~~~~ 399 (533)
||.|+|| |..|..+|..++.. |+. ..++++|++- .+...+.++.+. ..+... ..+ ....+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~-----g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~--~~~~~~~~~i---~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKE-----DVV-----KEINLISRPKSLEKLKGLRLDIYDA--LAAAGIDAEI---KISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CEEEEEECcccccccccccchhhhc--hhccCCCcEE---EECCC
Confidence 7999998 99999999987753 442 3799999852 111111122211 011110 011 11234
Q ss_pred HHHHhcccCCcEEEEeccCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CC
Q 009519 400 LLEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GE 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~G 463 (533)
.+.+++ .|++|=+.+.| | .+-+++++.|.+ ++...+|+--+||.+ +....+++++ ..
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~-~~~~~~viv~~npvd---~~t~~~~~~~g~~~ 139 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAE-FAPDTKILVVTNPVD---VMTYKALKESGFDK 139 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH---HHHHHHHHhcCCCH
Confidence 445877 89877444432 2 245677788864 778999999999986 4455555443 12
Q ss_pred cEEEecCCCC
Q 009519 464 NIVFASGSPF 473 (533)
Q Consensus 464 rai~AtGSPf 473 (533)
+-+|++|.-.
T Consensus 140 ~~viG~gt~L 149 (309)
T cd05294 140 NRVFGLGTHL 149 (309)
T ss_pred HHEeeccchH
Confidence 4478887543
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=85.91 E-value=1.6 Score=44.97 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=32.6
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+|++ .+|+|+|+|..|.-+|+.|+.+++ ++|.++|.+=+
T Consensus 27 kL~~---s~VlVvG~GGVGs~vae~Lar~GV-----------g~itLiD~D~V 65 (268)
T PRK15116 27 LFAD---AHICVVGIGGVGSWAAEALARTGI-----------GAITLIDMDDV 65 (268)
T ss_pred HhcC---CCEEEECcCHHHHHHHHHHHHcCC-----------CEEEEEeCCEe
Confidence 3455 999999999999999999987644 68999998744
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.1 Score=46.94 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=55.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc--cccCC---CCCChhhhccccccCCcCCccCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKER---KNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL--i~~~r---~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.||.|+|||+-|..+|..|.+. | . -.+|..|..-. +...+ ..+.. ...+ +. . ..-..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l--~~-~---i~~t~ 69 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVL--SD-T---LRATT 69 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-Cccc--CC-C---eEEEC
Confidence 6899999999999999988753 3 1 23454332110 00011 01110 0000 00 0 01124
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.++++. +|++| ++. +--+.+++++.++....++.+|..++|-..
T Consensus 70 d~~~a~~~--aDlVi-lav-ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 70 DFAEAANC--ADVVV-MGV-PSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CHHHHHhc--CCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 67788776 67544 332 334788888888654455556677888554
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=85.83 E-value=5 Score=36.14 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=49.8
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||+++|+ |-.|..|++.+.+. .|+ +=...+|++.=-..+. ++.+ ++...+ .+.+-..+|++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~-d~g~----~~~~~~--~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK-DVGE----LAGIGP--LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS-BCHH----HCTSST---SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc-hhhh----hhCcCC--cccccchhHHH
Confidence 38999999 99999999998772 344 2366777765111111 1111 111000 01112356777
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+++. +||+|=.|. |... .+.++...+ +..|+|..=+
T Consensus 64 ~~~~--~DVvIDfT~-p~~~-~~~~~~~~~--~g~~~ViGTT 99 (124)
T PF01113_consen 64 LLEE--ADVVIDFTN-PDAV-YDNLEYALK--HGVPLVIGTT 99 (124)
T ss_dssp HTTH---SEEEEES--HHHH-HHHHHHHHH--HT-EEEEE-S
T ss_pred hccc--CCEEEEcCC-hHHh-HHHHHHHHh--CCCCEEEECC
Confidence 7777 888887774 2222 233343332 3556665433
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase | Back alignment and domain information |
|---|
Probab=85.80 E-value=4.4 Score=43.40 Aligned_cols=130 Identities=11% Similarity=0.109 Sum_probs=73.7
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhhhhH-----hhhcCCCCCc-eecEEee
Q 009519 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLD 221 (533)
Q Consensus 149 Glyis~~d~~~i~~~l~n~p~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~~GKl~LY-----~a~aGI~P~~-~lPI~LD 221 (533)
|. ++..|-..+.++|+.. +++++ +++|+ .+--+-..|.+.+-+..+....+ ..=-||..-. .+|+-+
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~G~- 235 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPIGP- 235 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCcCh-
Confidence 44 3456667788888864 56665 77874 45555555555444433322222 1223554222 133222
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHH
Q 009519 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (533)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaa 301 (533)
+-.++|++.+.+.+.. .+ +.+++.+.+
T Consensus 236 ----------------------------~~t~~~l~~la~~~g~---------~~---~~i~~e~~~------------- 262 (396)
T cd01979 236 ----------------------------DGTRAWLEAICSAFGI---------FP---SVLAEREAR------------- 262 (396)
T ss_pred ----------------------------HHHHHHHHHHHHHhCC---------Ch---hHHHHHHHH-------------
Confidence 2378888888877641 01 123333221
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+.-++......|.. .|++|+|-+.-..++++.|.+.
T Consensus 263 -----~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~el 298 (396)
T cd01979 263 -----AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTRC 298 (396)
T ss_pred -----HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHHC
Confidence 33444445555566 8999999998899999988874
|
Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.68 Score=45.11 Aligned_cols=78 Identities=23% Similarity=0.430 Sum_probs=48.4
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~ 395 (533)
+|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+=+ .. .+++.+ .|.+. ..+ -|.+
T Consensus 16 ~L~~---s~VlviG~gglGsevak~L~~~GV-----------g~i~lvD~d~v-e~--snl~rq--~~~~~~~~~-iG~~ 75 (198)
T cd01485 16 KLRS---AKVLIIGAGALGAEIAKNLVLAGI-----------DSITIVDHRLV-ST--EDLGSN--FFLDAEVSN-SGMN 75 (198)
T ss_pred HHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEECCcC-Ch--hcCccc--Eecccchhh-cCch
Confidence 4555 999999999999999999987755 68999998732 22 234322 12221 001 1111
Q ss_pred CCCCHHHHhcccCCcEEEE
Q 009519 396 EGASLLEVVRKVKPHVLLG 414 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG 414 (533)
....+.+.++...|++=|=
T Consensus 76 Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 76 RAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHHHCCCCEEE
Confidence 1234666677777877543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=2.4 Score=44.47 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++..+.+++. +++|++|.+ ..|.-+|.||... | ..+.+|+|+
T Consensus 140 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~-------aTVt~chs~----------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSG---SDAVVIGRSNIVGKPMACLLLGE-----N-------CTVTTVHSA----------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhhC-----C-------CEEEEeCCC-----------
Confidence 456778888889999999888 999999985 5788888888642 3 246666653
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ------------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788888 99999999999999999998
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.4 Score=46.65 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=32.5
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.+|++ .||+|+|+|.-|.-+|..|..+++ .+|.++|.+-
T Consensus 20 ~~L~~---~~VlVvG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLRE---KHVLIIGAGALGTANAEMLVRAGV-----------GKVTIVDRDY 58 (339)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCc
Confidence 34556 999999999999999999987644 6899999963
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.7 Score=48.04 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.||.|+|+|..|.+||..++.+ |. +++++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 4899999999999999998764 53 6788887
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=85.51 E-value=0.79 Score=42.51 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=25.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||||+|+|.||+..|..|... | .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C-------CeEEEEecc
Confidence 699999999999999999842 3 378888654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=85.29 E-value=0.78 Score=41.60 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||+++|+|..|..+|+.|+..++ ++|.++|.+-+ .. .+|..+ .|.... + -|.+....+.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----------~~i~ivD~d~v-~~--~nl~r~--~~~~~~-~-vG~~Ka~~~~~~l 62 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----------GKITLIDFDTV-EL--SNLNRQ--FLARQA-D-IGKPKAEVAARRL 62 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----------CEEEEEcCCCc-Cc--chhhcc--ccCChh-H-CCChHHHHHHHHH
Confidence 68999999999999999987644 68999998733 22 234322 222111 0 0111123467777
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtG 470 (533)
+...|.+=|-... ..++++..... ..+-.||+.-+... .+...-.++.+ ..|...+.+|
T Consensus 63 ~~~~p~v~i~~~~--~~~~~~~~~~~---~~~~diVi~~~d~~-~~~~~l~~~~~-~~~i~~i~~~ 121 (143)
T cd01483 63 NELNPGVNVTAVP--EGISEDNLDDF---LDGVDLVIDAIDNI-AVRRALNRACK-ELGIPVIDAG 121 (143)
T ss_pred HHHCCCcEEEEEe--eecChhhHHHH---hcCCCEEEECCCCH-HHHHHHHHHHH-HcCCCEEEEc
Confidence 7777776554332 33444332222 23555777554432 12222223222 2355566555
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.27 E-value=2.3 Score=41.62 Aligned_cols=100 Identities=12% Similarity=0.202 Sum_probs=55.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..||.|+|+|..|..++..++.. |.. -.++++++++. +.+.+...+..|- . ....++.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~~~~~~~~~~~~~-----~---~~~~~~~~ 62 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----NVEKLDQLQARYN-----V---STTTDWKQ 62 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----CHHHHHHHHHHcC-----c---EEeCChHH
Confidence 37999999999999999888653 210 01246655541 0011222222221 0 11245777
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++++ .|++| ++..+. .-+++++.++. +-+..+|+.++.-.+
T Consensus 63 ~~~~--~DiVi-iavp~~-~~~~v~~~l~~-~~~~~~vis~~~gi~ 103 (245)
T PRK07634 63 HVTS--VDTIV-LAMPPS-AHEELLAELSP-LLSNQLVVTVAAGIG 103 (245)
T ss_pred HHhc--CCEEE-EecCHH-HHHHHHHHHHh-hccCCEEEEECCCCC
Confidence 7765 77766 443333 44788888854 223456666766554
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=2 Score=45.02 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..+.+++. ++|+|+| .|..|..+|.+|... |. .+.+++++ .
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T--- 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T--- 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C---
Confidence 455677888888888888888 9999999 999999999999853 43 46666431 1
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+|.|++++ .|++|-.-+.++.+++++++ +.-+|.=++
T Consensus 193 -------------------~~l~e~~~~--ADIVIsavg~~~~v~~~~lk-------~GavVIDvG 230 (296)
T PRK14188 193 -------------------RDLPAVCRR--ADILVAAVGRPEMVKGDWIK-------PGATVIDVG 230 (296)
T ss_pred -------------------CCHHHHHhc--CCEEEEecCChhhcchheec-------CCCEEEEcC
Confidence 137788887 89999888888888887733 455666555
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.20 E-value=1.7 Score=46.34 Aligned_cols=100 Identities=20% Similarity=0.315 Sum_probs=55.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc--cccCCCCCChhhhccccccCCc-CCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKERKNLDPAAAPFAKDPGDF-MGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL--i~~~r~~l~~~k~~~A~~~~~~-~~~~~~~~L 400 (533)
.||.|+|||+=|+++|..+.+- |-. =++|..|.+=. |..+|. + ..|-.. -.. ....-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~~-----V~lw~r~~~~~~~i~~~~~--N---~~yLp~-i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GHE-----VRLWGRDEEIVAEINETRE--N---PKYLPG-ILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CCe-----eEEEecCHHHHHHHHhcCc--C---ccccCC-ccCCcccccccCH
Confidence 6899999999999999998874 311 26776654311 111111 1 111110 000 001124678
Q ss_pred HHHhcccCCcE-EEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 401 LEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 401 ~e~V~~vkptv-LIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.++++. .|+ +++++++ +-+++++.|.....++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 898887 554 5555554 77788888753344555555554
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.6 Score=44.05 Aligned_cols=85 Identities=16% Similarity=0.326 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++..+-+++. ++++++|.+ ..|.-+|.||..-. .+. .+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~~~---~~a-------tVtvchs~----------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAG---AHVVVIGRGVTVGRPIGLLLTRRS---ENA-------TVTLCHTG----------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHhhcc---CCC-------EEEEeCCC-----------
Confidence 456778888888999998888 999999975 67888888886410 222 45666542
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 194 ------------------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ------------------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ------------------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1348888988 99999999999999999988
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=3.7 Score=42.30 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC-C--cC--CccCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-D--FM--GLREGA 398 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~-~--~~--~~~~~~ 398 (533)
.||.|+|+|..|..+|..|.++ | .+++++|+..-.. .+......+..... + +. ......
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 66 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGD----ELRAHGLTLTDYRGRDVRVPPSAIAFST 66 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHH----HHHhcCceeecCCCcceecccceeEecc
Confidence 4899999999999999998764 3 2688888742110 01000000000000 0 00 000112
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
++ ++++. +|++|=+. +.-..+++++.+.....+..+|..+.|....
T Consensus 67 ~~-~~~~~--~D~vil~v--k~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 67 DP-AALAT--ADLVLVTV--KSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred Ch-hhccC--CCEEEEEe--cCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 34 45554 78877433 2233578888886544666788889997653
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=84.94 E-value=0.84 Score=43.58 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=28.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|+|..|..||+.|+.+++ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----------CeEEEEeCC
Confidence 68999999999999999987644 689999987
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=84.92 E-value=2.6 Score=44.29 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
-.-+|-+|++.=++-.|-+++. +++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~---------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKG---KKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR---------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC----------
Confidence 3456777788888888988888 999999975 568888888764 23 257777553
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 201 -------------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -------------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888888 99999999999999999998
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=2.7 Score=44.03 Aligned_cols=130 Identities=13% Similarity=0.227 Sum_probs=85.8
Q ss_pred HHHHHHHHHhC--CCc---eeeee---cCCCchHHHHHHHHhcc--C------ceeccCcchhHHHHHHHHHHHHHHhCC
Q 009519 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 253 defv~av~~~~--P~~---~I~~E---Df~~~~af~iL~ryr~~--~------~~FnDDiQGTaaV~LAgli~Alr~~g~ 316 (533)
+|+++.++++- |++ ++|+= .+.....++.++-.+|- + ..|..+-.+=.-+|-+|++.=++..+.
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777664 543 55653 33333333333322221 1 122222233456677888888999999
Q ss_pred CCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+++. .++||+|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 156 ~l~G---K~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~---------------------------- 192 (288)
T PRK14171 156 NLTG---KNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK---------------------------- 192 (288)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8888 999999975 578888888864 232 46666542
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-.-+.++.+++++|+
T Consensus 193 -T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1248888888 99999999999999999998
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=2.6 Score=44.24 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+-.-+|-.|++.=++-.|.+++. ++++|+|.+ ..|.-+|.||... |.. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~---~~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQK-----GPG---ANATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHhc-----ccC---CCCEEEEecCC---------
Confidence 33456778888888889999988 999999975 5788888887642 210 00245555443
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|-..++++.++.++|+ +..||+=-.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik-------~gavVIDvG 237 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK-------PGATVIDVG 237 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC-------CCCEEEecC
Confidence 1248888888 99999999999999999998 345665443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=84.80 E-value=0.68 Score=49.56 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=33.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ ++|.++|.+=
T Consensus 37 ~~l~~---~~VliiG~GglG~~v~~~La~~Gv-----------g~i~ivD~D~ 75 (370)
T PRK05600 37 ERLHN---ARVLVIGAGGLGCPAMQSLASAGV-----------GTITLIDDDT 75 (370)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEeCCE
Confidence 55666 999999999999999999987654 6899999873
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.79 E-value=5.1 Score=40.58 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCceEEEeCchhHHHHHHHHHHHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+..||.|+|+|..|.+||+.|+..
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~ 25 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHA 25 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC
Confidence 347999999999999999988753
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=84.78 E-value=0.87 Score=45.83 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=32.8
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ .||+|+|+|..|.-+|+.|+.+++ ++|.++|.+
T Consensus 28 ~~L~~---~~VliiG~GglGs~va~~La~~Gv-----------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKA---ARVLVVGLGGLGCAASQYLAAAGV-----------GTLTLVDFD 65 (245)
T ss_pred HHhcC---CeEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCC
Confidence 35666 999999999999999999987644 689999987
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=11 Score=39.54 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..+++.|+|-|..|..+|+++... |+ +++.+|+... .+.. . ....+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~~~----~~~~--------~--------~~~~~ 166 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRSYV----NDGI--------S--------SIYME 166 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCCc----ccCc--------c--------cccCC
Confidence 45559999999999999999866543 43 6888887411 0000 0 01246
Q ss_pred HHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcc
Q 009519 400 LLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~p 475 (533)
|.|+++. .|+++=.- ..-+.|+++.++.|. +..++.=.|.-..--|-.-.+|++ +|+...|.=-=|++
T Consensus 167 l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk----~ga~lIN~sRG~~vd~~aL~~aL~--~g~i~~a~lDV~~~ 238 (303)
T PRK06436 167 PEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR----KGLAIINVARADVVDKNDMLNFLR--NHNDKYYLSDVWWN 238 (303)
T ss_pred HHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCceEEEEccCCC
Confidence 9999987 89887321 123789999999994 678888888755422333344444 55444332111211
Q ss_pred eecCCCeeeecccccceeechhhh
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIG 499 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGig 499 (533)
-..++. ....|+++=|=++
T Consensus 239 EP~~~~-----~~~~nviiTPHi~ 257 (303)
T PRK06436 239 EPIITE-----TNPDNVILSPHVA 257 (303)
T ss_pred CCCCcc-----CCCCCEEECCccc
Confidence 111101 1467889888764
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=84.60 E-value=2.2 Score=43.01 Aligned_cols=98 Identities=9% Similarity=0.206 Sum_probs=55.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcC-CChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
+|.|+|+|..|..+|..|.+. | +. ..+++++|++ .. ... .++..... .....+..++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~v~v~~r~----~~--~~~----~~~~~~~g---~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVK----PSQLTITNRT----PA--KAY----HIKERYPG---IHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCC----HH--HHH----HHHHHcCC---eEEECCHHHH
Confidence 699999999999999988653 3 11 1367777663 11 111 11111000 0112456677
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++. +|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 60 ~~~--aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 60 ISQ--SDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 765 67765 332 233457777777543345568888888765
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=84.42 E-value=0.84 Score=45.89 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++.||+|+|+|..|.-+|+.|+.+++ .+|.++|.+=
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-----------g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-----------GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCCE
Confidence 34999999999999999999987644 6999999863
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=3 Score=43.48 Aligned_cols=84 Identities=14% Similarity=0.296 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
=.-+|-.|++.=++..+.+++. +++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~---------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAG---KRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK---------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC----------
Confidence 3456778888888889999988 999999975 578888888864 232 45555432
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 190 -------------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 -------------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347888888 99999999999999999888
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=1.8 Score=47.71 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=65.9
Q ss_pred HHHHHhCCCceeeeecCCCchHHHHHHHHhcc-Cc--eeccCcchhHHHHHHHHHHHHHHhCC--------CCCCCCCce
Q 009519 257 EAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQK 325 (533)
Q Consensus 257 ~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~-~~--~FnDDiQGTaaV~LAgli~Alr~~g~--------~l~dl~~~r 325 (533)
+.+....|+ |.+|=+....-.++.++|.-. +| ++||+....|....+-++..++.... ...+ ..
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d 213 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YD 213 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CC
Confidence 334444564 445555667778889999765 44 35777888888888899988875321 1233 68
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||+|||.||+..|..+.. .|+ ++.++|.+
T Consensus 214 vvIIGgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 9999999999999998864 464 56667654
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=2 Score=46.08 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||.|+|||+-|+++|..+.+-
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999999864
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=84.14 E-value=4.8 Score=42.29 Aligned_cols=129 Identities=21% Similarity=0.218 Sum_probs=77.7
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+|| |..|..+|-.|+. .|+. ..+.|+|.+ + ..+. -+|.+.. .+.+ ..+.....++.+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~-a~g~alDL~~~~-~~~~----i~~~~~~~~~y~ 64 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-N-TPGVAADLSHIN-TPAK----VTGYLGPEELKK 64 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-c-cceeehHhHhCC-Ccce----EEEecCCCchHH
Confidence 8999999 9999999987743 4553 579999998 2 2322 2454432 1111 100001134678
Q ss_pred HhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCc-ccCCHHHHhcccCC--cE
Q 009519 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMN-AECTAADAFKHAGE--NI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~-aE~tpe~A~~wt~G--ra 465 (533)
.+++ .|++|=+.+. +|- .-+++++.+.+ +++..+|+-.|||..- +.+..+-+++++.= +-
T Consensus 65 ~~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~r 141 (310)
T cd01337 65 ALKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKR 141 (310)
T ss_pred hcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHH
Confidence 8888 8988745444 342 23456666754 8999999999999841 11124455555421 14
Q ss_pred EEecCCCCc
Q 009519 466 VFASGSPFE 474 (533)
Q Consensus 466 i~AtGSPf~ 474 (533)
+|++|. .+
T Consensus 142 viG~~~-LD 149 (310)
T cd01337 142 LFGVTT-LD 149 (310)
T ss_pred EEeeec-hH
Confidence 778775 54
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=84.11 E-value=3.9 Score=42.78 Aligned_cols=127 Identities=20% Similarity=0.313 Sum_probs=77.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|..|+. .|+. ..|.|+|.+-=...+- -+|.+.. +|.... .. ....+.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~~-----~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~-~v---~~~~dy~~ 68 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGLA-----DELVLVDVVEDKLKGEAMDLQHGS-AFLKNP-KI---EADKDYSV 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHHHHHhh-ccCCCC-EE---EECCCHHH
Confidence 599999999999999987754 3543 5799999742111111 1333222 232211 11 11245555
Q ss_pred HhcccCCcEEEEeccC---CCCCC------------HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcE
Q 009519 403 VVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Ft------------eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Gra 465 (533)
+++ +|++|=+.+. +| -| +++++.|.+ ++..-+|+-.|||.. ....-+++++ .-+-
T Consensus 69 -~~~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~ 140 (312)
T cd05293 69 -TAN--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVK-YSPNAILLVVSNPVD---IMTYVAWKLSGLPKHR 140 (312)
T ss_pred -hCC--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEccChHH---HHHHHHHHHhCCCHHH
Confidence 777 8998643332 33 23 356677754 899999999999995 6666666653 1235
Q ss_pred EEecCCCC
Q 009519 466 VFASGSPF 473 (533)
Q Consensus 466 i~AtGSPf 473 (533)
+|++|.-.
T Consensus 141 viG~gt~L 148 (312)
T cd05293 141 VIGSGCNL 148 (312)
T ss_pred EEecCchH
Confidence 78887554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=2.6 Score=43.58 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=53.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh--ccccccCCcCC-ccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDFMG-LREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~--~~A~~~~~~~~-~~~~~~L 400 (533)
-||.|+|+|+.|.++|..|... |. ++.++|+..=- .+.+..... .+. +...... .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~~~~---~~~i~~~~~~~~~~-~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARRPEF---AAALAAERENREYL-PGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCCHHH---HHHHHHhCcccccC-CCCcCCCCeEEeCCH
Confidence 4899999999999999998864 32 57777773110 011111000 000 0000000 0112467
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.|+++. .|++|= +. +....+++++.+. +.-+|+-++|.
T Consensus 69 ~e~~~~--aD~Vi~-~v-~~~~~~~v~~~l~----~~~~vi~~~~G 106 (328)
T PRK14618 69 EEALAG--ADFAVV-AV-PSKALRETLAGLP----RALGYVSCAKG 106 (328)
T ss_pred HHHHcC--CCEEEE-EC-chHHHHHHHHhcC----cCCEEEEEeec
Confidence 888776 677652 22 2224577777663 34466667885
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.94 E-value=3.8 Score=43.26 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=78.4
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccC-CCCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
-||.|+|| |..|..+|-.|+.... .+. .+. ..|.|+|.+.-. ..+ .-+|.+...++-... . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDM--LGK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhh--cCC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 9999999887776433 110 011 279999985321 111 123444332332211 1 1234
Q ss_pred HHHHhcccCCcEEEEecc---CCCC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCCcccCCHHHHhcccCC-
Q 009519 400 LLEVVRKVKPHVLLGLSG---VGGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~---~~g~-----------Fteevv~~Ma~~~~-erPIIFaLSNPt~~aE~tpe~A~~wt~G- 463 (533)
..|.+++ .|++|=+.+ .+|- +=+++++.+++ ++ +..||+-.|||.. +..--+++++.|
T Consensus 74 ~y~~~~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s~g~ 147 (326)
T PRK05442 74 PNVAFKD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE-VAARDVKVLVVGNPAN---TNALIAMKNAPDL 147 (326)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEeCCchH---HHHHHHHHHcCCC
Confidence 6677888 898873333 3441 22455666643 45 6999999999985 666677776522
Q ss_pred --cEEEecCCCCcce
Q 009519 464 --NIVFASGSPFENV 476 (533)
Q Consensus 464 --rai~AtGSPf~pv 476 (533)
+-||++ +-.+..
T Consensus 148 p~~rViG~-t~LDs~ 161 (326)
T PRK05442 148 PAENFTAM-TRLDHN 161 (326)
T ss_pred CHHHEEee-eHHHHH
Confidence 226676 444443
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=83.93 E-value=8.8 Score=40.38 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
-||+|.|| |..|..+|..|+.. |+-..+....++++|.+.-. ..+. -++.+...++..+ . ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~---~---~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKS---V---VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCC---c---eecCC
Confidence 58999999 99999999987752 32100111379999985421 1111 1222211111111 0 12357
Q ss_pred HHHHhcccCCcEEEEeccCCCC--CC------------HHHHHHhhhcCC-CCCeEEecCCCCCcccCCHHHHhcccCC-
Q 009519 400 LLEVVRKVKPHVLLGLSGVGGV--FN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~--Ft------------eevv~~Ma~~~~-erPIIFaLSNPt~~aE~tpe~A~~wt~G- 463 (533)
+.+++++ +|++|=+.+.+.. -| +++++.|.+ ++ ..-||+-.|||.. +...-+++++.|
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~~~~~ 145 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDK-YAKKNVKVLVVGNPAN---TNALILLKYAPSI 145 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEecCcHH---HHHHHHHHHcCCC
Confidence 8899988 9998855544321 22 566677754 64 6889999999985 666667666421
Q ss_pred -cEEEecCCCCcce
Q 009519 464 -NIVFASGSPFENV 476 (533)
Q Consensus 464 -rai~AtGSPf~pv 476 (533)
+-.|.||+=.+..
T Consensus 146 ~~~~ig~gt~LDs~ 159 (325)
T cd01336 146 PKENFTALTRLDHN 159 (325)
T ss_pred CHHHEEeeehHHHH
Confidence 1226777555544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.71 E-value=8.1 Score=38.56 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+..+.|++..+.. .. .+++|+|+|+.|...+.+... .|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak~-----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAAA-----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 3445566655543 44 799999999877666554432 353 45877764
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=3.4 Score=43.14 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..+.+++. ++++|+|-+ ..|.-+|.||... | ..+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~-------AtVtichs~----------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKG---KRALVVGRSNIVGKPMAMMLLER-----H-------ATVTIAHSR----------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----C-------CEEEEeCCC-----------
Confidence 455778888888999988888 999999975 5788888887642 2 145555332
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ------------------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ------------------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788888 99999999999999999998
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=83.66 E-value=0.86 Score=44.43 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
++|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+-+ .. .+|+.+ .|.+.. + -|.+
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~GV-----------g~i~lvD~d~v-e~--snL~rq--fl~~~~-d-iG~~ 75 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLSGI-----------GSLTILDDRTV-TE--EDLGAQ--FLIPAE-D-LGQN 75 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHcCC-----------CEEEEEECCcc-cH--hhCCCC--ccccHH-H-cCch
Confidence 44556 999999999999999999987654 69999998732 22 234321 122211 1 1111
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHh
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~M 430 (533)
....+.+.++...|++-|=... ..+++...+.+
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~~--~~~~~~~~~~~ 108 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVDT--DDISEKPEEFF 108 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEEe--cCccccHHHHH
Confidence 2245788888899998775543 23344333334
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=83.36 E-value=2 Score=43.44 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|++.+++..+...+. .+++|+|+|.+|.+++..+.+. | .+++++|+
T Consensus 102 ~G~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~~-----g-------~~v~v~~R 148 (270)
T TIGR00507 102 IGLVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLKA-----D-------CNVIIANR 148 (270)
T ss_pred HHHHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHHC-----C-------CEEEEEeC
Confidence 3466666654444455 7999999998888888777642 3 26888876
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=3.6 Score=42.96 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=86.3
Q ss_pred HHHHHHHHHhC--CC---ceeeee---cCCCchHHHHHHHHhcc--C------ceeccCcchhHHHHHHHHHHHHHHhCC
Q 009519 253 DEFMEAVHARW--PK---AIVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 253 defv~av~~~~--P~---~~I~~E---Df~~~~af~iL~ryr~~--~------~~FnDDiQGTaaV~LAgli~Alr~~g~ 316 (533)
+||.+.+++.- |+ .++|+= .+.....++.+.-.+|- + ..|..|..+=.-+|-.|++.=++-.+.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 56777777764 54 256643 44444444433333331 1 122222233456688888888999999
Q ss_pred CCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+++. .++||+|.+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~---------------------------- 191 (282)
T PRK14180 155 KTEG---AYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF---------------------------- 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC----------------------------
Confidence 9988 999999975 578888888864 232 45666542
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1247777777 99999999999999999888
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=83.22 E-value=0.92 Score=52.17 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
|++.||+|+|||.-|.-+|+.|+.+++ ++|.+||.+-+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~V 373 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKV 373 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEE
Confidence 334999999999999999999998866 69999998644
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=83.19 E-value=1 Score=46.78 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=66.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||+|+|+|..|.-||+.|+.+++ ++|.++|.+= +.. .+|+.. -|.+.. +. +........+-
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d~-ve~--snL~rq--f~~~~~-dI-Gk~Kaea~~~~ 81 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTKP-CSW--SDLSSQ--FYLREE-DI-GKNRAEASQAR 81 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCCc-cch--hhcccC--ccCChH-Hh-CHHHHHHHHHH
Confidence 899999999999999999988755 6999999872 222 234321 122211 10 10111235556
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtG 470 (533)
++...|.|-|=+.. +.++++.++.. +=||.+..|+..+. .-. .+-+..+..++.++
T Consensus 82 L~eLNp~V~V~~~~--~~~~~~~l~~f------dvVV~~~~~~~~~~--~in-~~c~~~~ipfI~a~ 137 (286)
T cd01491 82 LAELNPYVPVTVST--GPLTTDELLKF------QVVVLTDASLEDQL--KIN-EFCHSPGIKFISAD 137 (286)
T ss_pred HHHHCCCCEEEEEe--ccCCHHHHhcC------CEEEEecCCHHHHH--HHH-HHHHHcCCEEEEEe
Confidence 66777777765543 33677766543 34555555443321 111 22344566666554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=3.1 Score=48.19 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC--CC------CCChhhhcccc-
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~--r~------~l~~~k~~~A~- 386 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ .+|.++|-+=+-..+ |. ++-..|..-+.
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 45566 999999999999999999988755 689999986432221 21 22223332222
Q ss_pred ---ccCC-c--CCcc---CCCCHHHHhcccCCcEEEEeccCCCCCC---HHHHHHhhhcCCCCCeEEecC----------
Q 009519 387 ---DPGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFN---EEVLKAMRESDSVKPAIFAMS---------- 444 (533)
Q Consensus 387 ---~~~~-~--~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft---eevv~~Ma~~~~erPIIFaLS---------- 444 (533)
.-++ . .... ...++.+.+++ .|++|-.. ..|+ +..|...|. .+..|+|++-.
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~---D~~~~~~r~~l~~~c~-~~~iP~i~~g~~G~~g~~~~~ 178 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGL---DFFQFEIRRTLFNMAR-EKGIPVITAGPLGYSSAMLVF 178 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECC---CCCcHHHHHHHHHHHH-HCCCCEEEeecccccceEEEE
Confidence 1111 0 0001 12356777776 89988544 3333 345665554 56799998754
Q ss_pred CCCCcccCCHHHHhcccCC
Q 009519 445 NPTMNAECTAADAFKHAGE 463 (533)
Q Consensus 445 NPt~~aE~tpe~A~~wt~G 463 (533)
+|. ....++.|.+.++
T Consensus 179 ~p~---~~~~~~~~~~~~~ 194 (679)
T PRK14851 179 TPQ---GMGFDDYFNIGGK 194 (679)
T ss_pred cCC---CCCHhHhccCCCC
Confidence 665 4778888888776
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=83.16 E-value=0.96 Score=48.08 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|++ .||+|+|+|..|..||..|+.+++ ++|.++|.+
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~Gv-----------g~i~lvD~d 168 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAAGV-----------GTLGIVDHD 168 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCC
Confidence 4566 999999999999999999987654 689999986
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.12 E-value=1.3 Score=48.21 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
.+|++ .||+|+|+|..|.-|+++|+.+.+ ++|.++|-+=+ . ..+|+.+--.|-..+-. +...
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~GV-----------geI~LVD~D~V-e--~SNLnRQ~gaf~~~DvG-k~~~ 233 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKTPV-----------REIHLFDGDDF-L--QHNAFRSPGAASIEELR-EAPK 233 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHcCC-----------CEEEEECCCEe-c--ccccccccccCCHhHcC-Ccch
Confidence 45666 999999999999999999988754 68999998732 2 12343321011111000 0000
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHh
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~M 430 (533)
...-+.+.++...+.+ ...+..++++-+..+
T Consensus 234 KVevaa~rl~~in~~I----~~~~~~I~~~n~~~L 264 (393)
T PRK06153 234 KVDYFKSRYSNMRRGI----VPHPEYIDEDNVDEL 264 (393)
T ss_pred HHHHHHHHHHHhCCeE----EEEeecCCHHHHHHh
Confidence 1123555555555543 334455677777655
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.05 E-value=38 Score=36.85 Aligned_cols=220 Identities=19% Similarity=0.186 Sum_probs=124.7
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------C---C---CCCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDF 321 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g---~---~l~dl 321 (533)
...|+. .|+.-=.+..| ..+..--+.-++|+|--- ..+|=-+++.+++.+|-. | + .-.+|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 345665 66665555554 333333334589998532 335556788888887732 1 0 11345
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.+.++.|+|.|..|..+|+.+... |+ +++.+|+.. +.... .+ ....+|.
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~~-----~~~~~-----~~---------~~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM-------RVYFYDIED-----KLPLG-----NA---------RQVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCCc-----ccccC-----Cc---------eecCCHH
Confidence 559999999999999999988754 43 688888631 00000 00 0124799
Q ss_pred HHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCC-Ccce
Q 009519 402 EVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENV 476 (533)
Q Consensus 402 e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSP-f~pv 476 (533)
|+++. .|+++=.- ..-+.|+++.+..|. +..++.-.|.-.---|-.-.+|++ +|+ |.+.|.= |++-
T Consensus 199 ell~~--sDiVslh~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~E 269 (409)
T PRK11790 199 ELLAQ--SDVVSLHVPETPSTKNMIGAEELALMK----PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVE 269 (409)
T ss_pred HHHhh--CCEEEEcCCCChHHhhccCHHHHhcCC----CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCC
Confidence 99988 89877321 113799999999993 567877777544322222334444 566 4433321 2211
Q ss_pred ecCCCe--eeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhccc
Q 009519 477 DLGNGK--IGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDN 526 (533)
Q Consensus 477 ~~~~G~--~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v 526 (533)
..+... ...--+..|+++-|=+|-....+. ..|...+++.+.+..
T Consensus 270 P~~~~~~~~~pL~~~~nvilTPHia~~t~ea~-----~~~~~~~~~nl~~~~ 316 (409)
T PRK11790 270 PKSNGDPFESPLRGLDNVILTPHIGGSTQEAQ-----ENIGLEVAGKLVKYS 316 (409)
T ss_pred CCCccccccchhhcCCCEEECCcCCCCHHHHH-----HHHHHHHHHHHHHHH
Confidence 111000 011234578999999885433322 344455555555443
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=3.6 Score=43.05 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++-.+.+++. .++||+|.+ ..|.-+|.||.. +|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~----------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAG---KEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK----------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 355777888888888998888 999999975 678888888864 232 45556432
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 189 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ------------------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247888888 99999999999999999997
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=3.6 Score=43.01 Aligned_cols=89 Identities=18% Similarity=0.331 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+=.-+|-.|++.=++-.|.+++. +++||+|-+ ..|.-+|.||... |-+. . ..+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~--------- 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ--------- 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC---------
Confidence 33456778888888999999988 999999975 5788888888642 1100 0 134444331
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..++++.+++|+|+
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 --------------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1348888888 99999999999999999998
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.70 E-value=1.9 Score=47.61 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|++.+++..+.++++ .+++|+|+|.+|.+++..+.+ .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 3588888887888877 999999999888877777764 342 5777775
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.46 E-value=3.6 Score=43.54 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=70.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|...|-+|+. .++. +.+.|+|.. +...-..-+|.+.....-.+.. .. ...+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i~---~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDVK-IT---GDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCceE-Ee---cCCC-hh
Confidence 389999999999999998843 3443 379999987 1111111234332211111111 00 1123 45
Q ss_pred HhcccCCcEEE---EeccCCC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 403 VVRKVKPHVLL---GLSGVGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 403 ~V~~vkptvLI---G~S~~~g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++ .|+.| |+...|| -+-+++.+.+++ .+++.||+-.|||.. ++.--+++.+
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~-~~~d~ivlVvtNPvD---~~ty~~~k~s 132 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAK-YAPDAIVLVVTNPVD---ILTYIAMKFS 132 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCeEEEEecCcHH---HHHHHHHHhc
Confidence 5777 88876 3344455 244677788864 889999999999985 4555555543
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=2.7 Score=43.34 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=25.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998764 3 357777774
|
|
| >KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.17 E-value=1 Score=50.53 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC--CCCCChh
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RKNLDPA 380 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~--r~~l~~~ 380 (533)
+.+.|++++|||+-|++||+-|+.+++ ++|.+||.--+-+.+ |..|-.+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~kVsySNPVRQsLy~F 388 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNGKVSYSNPVRQSLYTF 388 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecCeeeccchhhhhhhhh
Confidence 446999999999999999999999988 699999985443333 3345444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.17 E-value=6.1 Score=40.48 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~~-----~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GLA-----GEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----cEEEEEECC
Confidence 6899999999999999888653 431 368888874
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.79 E-value=3.9 Score=42.95 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.=++..+.+++. ++++|+|.+ .-|.-+|.||..... ..+ ..+.+|.|+
T Consensus 138 PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~------------ 194 (297)
T PRK14167 138 PCTPHGIQKLLAAAGVDTEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR------------ 194 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC------------
Confidence 46778888888888998888 999999975 578888888864211 001 134445432
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|-..+.++.++.++|+ +.-||+=-.
T Consensus 195 -----------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik-------~gaiVIDvG 233 (297)
T PRK14167 195 -----------------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS-------EGATVIDVG 233 (297)
T ss_pred -----------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC-------CCCEEEEcc
Confidence 1348888888 99999999999999999988 455665443
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=81.76 E-value=1.3 Score=47.01 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=32.8
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|++ .||+|+|+|..|.-+|+.|+.+++ ++|.++|.+=
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~Gv-----------g~i~lvD~D~ 62 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGAGV-----------GHITIIDDDT 62 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCE
Confidence 44566 999999999999999999987644 6899999873
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=81.51 E-value=4 Score=44.11 Aligned_cols=83 Identities=11% Similarity=0.231 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=|+..+.+++. +++||+|-+ ..|.-+|.||... | ..+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~~-----~-------ATVTicHs~----------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQRE-----D-------ATVSIVHSR----------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----C-------CeEEEeCCC-----------
Confidence 455677788888889998888 999999975 5788888887652 3 246666432
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-.-+.++.++.|+||
T Consensus 265 ------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1348888888 99999999999999999998
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=33 Score=36.01 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=92.0
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..+++.|+|.|..|..+|+.+..+ |+ +++.+|+.. .. .+... .+. ...+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~--~~~~~-~~~----------~~~~ 183 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS--WPGVQ-SFA----------GREE 183 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC--CCCce-eec----------cccc
Confidence 44559999999999999999999865 43 677787631 11 11000 110 1246
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh--cccCCcEEEecCCCC
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPF 473 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~--~wt~Grai~AtGSPf 473 (533)
|.|+++. .|+++=.-. .-+.|+++.++.|. +..++.=.|. .++--|+|+ ....|+.--|.--=|
T Consensus 184 l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 184 LSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP----DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC----CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCC
Confidence 9999988 898873211 12778999999993 5667776664 344444443 223666443332223
Q ss_pred cceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
++-..+.. ..--+..|+++-|=++-.. . .+.|...+++-+-.....+
T Consensus 254 ~~EPl~~~--~pl~~~~nvi~TPHiag~t------~-~~~~~~~~~~n~~~~~~g~ 300 (312)
T PRK15469 254 SREPLPPE--SPLWQHPRVAITPHVAAVT------R-PAEAVEYISRTIAQLEKGE 300 (312)
T ss_pred CCCCCCCC--ChhhcCCCeEECCcCCCCc------C-HHHHHHHHHHHHHHHHcCC
Confidence 32222211 1112467999999887322 1 2345555555544444333
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=81.25 E-value=4.7 Score=42.13 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=77.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||..|..+|..|+. .|+- +.+.|+|.+-=..++. -+|.+.. .|....+ .. -...+ .+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~-~~--i~~~~-y~~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGLF-----SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTN-TK--IRAGD-YDD 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCC-EE--EEECC-HHH
Confidence 78999999999999998775 2443 4799999731111111 1333322 2221000 00 01123 466
Q ss_pred hcccCCcEEEEeccC---CCC-------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcE
Q 009519 404 VRKVKPHVLLGLSGV---GGV-------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (533)
Q Consensus 404 V~~vkptvLIG~S~~---~g~-------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Gra 465 (533)
+++ .|++|=+.+. +|- +=+++++.+.+ ++...|++-.|||.. +...-+++++. =+-
T Consensus 66 ~~~--aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~-~~p~~i~ivvsNPvD---v~t~~~~k~sg~p~~r 139 (307)
T cd05290 66 CAD--ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITK-VTKEAVIILITNPLD---IAVYIAATEFDYPANK 139 (307)
T ss_pred hCC--CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCcHH---HHHHHHHHHhCcChhh
Confidence 777 8988744443 342 12467777754 889999999999984 66666666541 234
Q ss_pred EEecCCCCcce
Q 009519 466 VFASGSPFENV 476 (533)
Q Consensus 466 i~AtGSPf~pv 476 (533)
+|.||.=.+..
T Consensus 140 viG~gt~LDs~ 150 (307)
T cd05290 140 VIGTGTMLDTA 150 (307)
T ss_pred eecccchHHHH
Confidence 77887554443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=81.00 E-value=1.5 Score=40.92 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|||.||+..|..|.+. |+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-----g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-----GI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-----T---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhC-----CC------CcEEEEeCC
Confidence 6899999999999888654 55 348899987
|
... |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.80 E-value=7.3 Score=38.78 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=69.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..+.+. |.. ..+++++|++. +.....+..| .- ....+..++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~----~~~v~v~~r~~------~~~~~~~~~~---g~-----~~~~~~~~~ 59 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVP----AKDIIVSDPSP------EKRAALAEEY---GV-----RAATDNQEA 59 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCC----cceEEEEcCCH------HHHHHHHHhc---CC-----eecCChHHH
Confidence 5799999999999999988653 321 14677777631 1111111111 00 012456777
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC-CcEEEecCCCCcceecC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSPFENVDLG 479 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~-Grai~AtGSPf~pv~~~ 479 (533)
++. +|++| ++. +....+++++.+.. +. ..+|..++|-++. ++.-+|.. |..+ ...-|..|..+.
T Consensus 60 ~~~--advVi-l~v-~~~~~~~v~~~l~~-~~-~~~vvs~~~gi~~-----~~l~~~~~~~~~i-v~~~P~~p~~~~ 124 (267)
T PRK11880 60 AQE--ADVVV-LAV-KPQVMEEVLSELKG-QL-DKLVVSIAAGVTL-----ARLERLLGADLPV-VRAMPNTPALVG 124 (267)
T ss_pred Hhc--CCEEE-EEc-CHHHHHHHHHHHHh-hc-CCEEEEecCCCCH-----HHHHHhcCCCCcE-EEecCCchHHHc
Confidence 765 78766 443 44457788888854 22 3588889987763 33334443 3233 335676666553
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.61 E-value=1.4 Score=46.94 Aligned_cols=107 Identities=24% Similarity=0.370 Sum_probs=69.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
-||+|+|.|-+|+--|++.+- +. .++.+.|.+ .+| |......|..+-.-.. .....++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~g-------lg-----A~Vtild~n----~~r--l~~ldd~f~~rv~~~~--st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIG-------LG-----ADVTILDLN----IDR--LRQLDDLFGGRVHTLY--STPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHhc-------cC-----CeeEEEecC----HHH--HhhhhHhhCceeEEEE--cCHHHHHHH
Confidence 799999999999999887654 32 367778763 222 4444444443210000 012459999
Q ss_pred hcccCCcEEEEec-----cCCCCCCHHHHHHhhhcCCCCCeE----------EecCCCCCcccCCHHH
Q 009519 404 VRKVKPHVLLGLS-----GVGGVFNEEVLKAMRESDSVKPAI----------FAMSNPTMNAECTAAD 456 (533)
Q Consensus 404 V~~vkptvLIG~S-----~~~g~Fteevv~~Ma~~~~erPII----------FaLSNPt~~aE~tpe~ 456 (533)
|++ .|.+||.= ..|.+.|+|+++.|. +-.+| |-=|.||+.++-|.+.
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk----pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK----PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcC----CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 987 99999873 345679999999994 33443 5556777766666543
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=80.43 E-value=5.4 Score=41.94 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=78.4
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+|| |..|..+|.+|+. .|+- ..+.|+|.+. ..+. -+|.+.. ... ...+.....++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 7899999 9999999998754 2442 5799999876 2221 2344322 110 0000001124778
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHHhcccC--CcE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHAG--ENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A~~wt~--Gra 465 (533)
++++ .|++|=+.+.+ |- .=+++.+.+.+ +++..||+-.|||.. ++.+..+-+++++. =+-
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~-~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~r 140 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAE-SCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNK 140 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHH
Confidence 8988 89887444433 31 22455666643 789999999999995 22235556665431 123
Q ss_pred EEecCCCCcce
Q 009519 466 VFASGSPFENV 476 (533)
Q Consensus 466 i~AtGSPf~pv 476 (533)
+|++|. .+..
T Consensus 141 ViG~g~-LDsa 150 (312)
T TIGR01772 141 LFGVTT-LDIV 150 (312)
T ss_pred EEeeec-chHH
Confidence 788885 5533
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.40 E-value=1.5 Score=40.84 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=54.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||-|+|.|..|.+||+.|... |. +++..|+. . +.-+.+.+... ....|+.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~------~~~~~~~~~g~-----~~~~s~~e~ 54 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----P------EKAEALAEAGA-----EVADSPAEA 54 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----H------HHHHHHHHTTE-----EEESSHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----h------hhhhhhHHhhh-----hhhhhhhhH
Confidence 5899999999999999999653 43 68888752 1 11122332211 124689999
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHH--hhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKA--MRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~--Ma~~~~erPIIFaLSNPt~ 448 (533)
++. .|++|=+-. .+.=.++++.. +.+...+..||.=+|+-.+
T Consensus 55 ~~~--~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 55 AEQ--ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHH--BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhc--ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 998 687774321 22334555554 4333567778888887666
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=5.1 Score=42.13 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..|.+++. +++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~----------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR----------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 346777888888889998888 999999975 578888888864 232 45555332
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1348888888 99999999999999999998
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=19 Score=36.99 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=58.8
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc
Q 009519 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387 (533)
Q Consensus 308 i~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~ 387 (533)
+.|++..+.. .. ++++|.|+|+.|...+.+... .|. ++++.+|+. +.+..+|+.
T Consensus 159 ~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~~-----------~~~~~~a~~ 212 (343)
T PRK09880 159 IHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADVS-----------PRSLSLARE 212 (343)
T ss_pred HHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeCC-----------HHHHHHHHH
Confidence 5555554433 45 799999999887776654443 243 468777652 222233332
Q ss_pred cC--C-cCCccCCCCHHHHhccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh
Q 009519 388 PG--D-FMGLREGASLLEVVRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF 458 (533)
Q Consensus 388 ~~--~-~~~~~~~~~L~e~V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~ 458 (533)
-. . +. ....++.+.++.- ++|++|=+++.+ ..-++.++.|+ ..-+=+++.+ +....+..+.+.+
T Consensus 213 lGa~~vi~--~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~--~~G~iv~~G~--~~~~~~~~~~~~~ 280 (343)
T PRK09880 213 MGADKLVN--PQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTR--AKGVMVQVGM--GGAPPEFPMMTLI 280 (343)
T ss_pred cCCcEEec--CCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhh--cCCEEEEEcc--CCCCCccCHHHHH
Confidence 10 0 00 0112345544322 378888777532 23355667764 2333333333 3233355555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 533 | ||||
| 1llq_A | 605 | Crystal Structure Of Malic Enzyme From Ascaris Suum | 1e-95 | ||
| 2aw5_A | 575 | Crystal Structure Of A Human Malic Enzyme Length = | 7e-95 | ||
| 1gq2_A | 555 | Malic Enzyme From Pigeon Liver Length = 555 | 6e-90 | ||
| 1gz3_A | 554 | Molecular Mechanism For The Regulation Of Human Mit | 3e-85 | ||
| 1qr6_A | 584 | Human Mitochondrial Nad(P)-Dependent Malic Enzyme L | 1e-83 | ||
| 1efk_A | 584 | Structure Of Human Malic Enzyme In Complex With Ket | 1e-83 | ||
| 1do8_A | 564 | Crystal Structure Of A Closed Form Of Human Mitocho | 2e-83 | ||
| 1gz4_A | 551 | Molecular Mechanism Of The Regulation Of Human Mito | 3e-83 |
| >pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 | Back alignment and structure |
|
| >pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 | Back alignment and structure |
|
| >pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 | Back alignment and structure |
|
| >pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 | Back alignment and structure |
|
| >pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 | Back alignment and structure |
|
| >pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 | Back alignment and structure |
|
| >pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 | Back alignment and structure |
|
| >pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 | Back alignment and structure |
|---|
Score = 688 bits (1777), Expect = 0.0
Identities = 210/492 (42%), Positives = 303/492 (61%), Gaps = 22/492 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQ 89
K+G ++L DP NK F L ER +L + GLLPP + + Q +++F L +
Sbjct: 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSD---- 56
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L ++ +L L DRNE L+Y+VL +I+ F PI+YTPTVGL CQ+Y FRRPRG
Sbjct: 57 ------LDRYILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + +M+ +WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A G
Sbjct: 111 LFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268
+ P + LPVMLDVGT+N+ LL+D LY+GLR R+ G+ Y ++DEFMEAV +R+ ++
Sbjct: 171 VKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVV 328
QFEDF AF L +YR ++C FNDDIQGTA VA+AGLL +R L+ D ++
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS---DHTVLF 287
Query: 329 VGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388
GAG A LG+ + V A + G + A + +++D GLI K R +L P FA +
Sbjct: 288 QGAGEAALGIANLIVMAMQKE-GVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEH 346
Query: 389 GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448
E +L ++V+ +KP VL+G++ +GG F +++L+ M + +P IFA+SNPT
Sbjct: 347 ------CEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNK-RPIIFALSNPTS 399
Query: 449 NAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508
AECTA +K+ +FASGSPF+ V L +G+ + Q NN Y+FPG+ LG + G +
Sbjct: 400 KAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLK 459
Query: 509 FITDGMLQQAAE 520
I D + AE
Sbjct: 460 HIGDDVFLTTAE 471
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 | Back alignment and structure |
|---|
Score = 682 bits (1763), Expect = 0.0
Identities = 203/495 (41%), Positives = 301/495 (60%), Gaps = 21/495 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTE 87
+ ++G ++ +P NK F L ER LGL+GLLPP++ + + Q RF + + +
Sbjct: 1 IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSP-- 58
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 59 --------LEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRP 110
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G+GIP+GKL +Y A
Sbjct: 111 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 170
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKA 266
AGI P R LPV +DVGT+N LL+D Y+GL Q R ++Y ++DEFM+A+ R+
Sbjct: 171 AGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNT 230
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKI 326
++QFEDF AF L +YR+++C FNDDIQGTA VALAGLL + ++ + KI
Sbjct: 231 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPIS---EHKI 287
Query: 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFA 385
+ +GAG A LG+ + V + G ++ A+ K ++ DK GL+ K RK +D PF
Sbjct: 288 LFLGAGEAALGIANLIVMSMVEN-GLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFT 346
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445
+ + + V +KP ++G++G G +F +V++AM S + +P IFA+SN
Sbjct: 347 HSAPE----SIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAM-ASINERPVIFALSN 401
Query: 446 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 402 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 461
Query: 506 GARFITDGMLQQAAE 520
R I+D + +AA+
Sbjct: 462 NTRHISDSVFLEAAK 476
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 | Back alignment and structure |
|---|
Score = 671 bits (1732), Expect = 0.0
Identities = 219/501 (43%), Positives = 306/501 (61%), Gaps = 25/501 (4%)
Query: 23 PGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSL 82
P KR ++L +P NK GF L ER LGL GLLPP ++ EQQ R + R
Sbjct: 30 PERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQ 89
Query: 83 EKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSG 142
+ LA++ L+ L DRNE L+YRV+ D++K+ PI+YTPTVGL CQN+
Sbjct: 90 PND----------LARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGY 139
Query: 143 LFRRPRGMYFSAKDKG--EMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGK 200
++R+P+G+Y + D ++ ++ NW + V IV+TDG RILGLGDLG GIGIP+GK
Sbjct: 140 IYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGK 199
Query: 201 LDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVH 260
L +YVA G+ P+ LPV+LDVGTNN LL D Y+GLR R+ G++Y +++D FM+A
Sbjct: 200 LALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACT 259
Query: 261 ARW-PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLT 319
++ K ++QFEDF AF L++Y+ ++ MFNDDIQGTA V +AGLL R
Sbjct: 260 KKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTK---K 316
Query: 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379
+ +K + GAG+A G+ +M V G + A N+ +L+D DGL+TK RK ++P
Sbjct: 317 LVSQEKYLFFGAGAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKEMNP 375
Query: 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPA 439
FAKD + E S+LEV+R +P L+G S V G FNEEV++AM E + +P
Sbjct: 376 RHVQFAKD------MPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINE-RPI 428
Query: 440 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499
IFA+SNPT AECTA +A+ ++ASGSPF N +L NG Q NN Y+FPG+
Sbjct: 429 IFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFPGVA 487
Query: 500 LGTLLSGARFITDGMLQQAAE 520
LGT+L R + + + AA+
Sbjct: 488 LGTILFQIRHVDNDLFLLAAK 508
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-31
Identities = 95/359 (26%), Positives = 144/359 (40%), Gaps = 79/359 (22%)
Query: 176 VLTDGSRILGLGDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDR 233
V++D +R+LG GD+ G G+ + GK + GI+ +P+ +D + N++ D
Sbjct: 95 VVSDSTRVLGDGDVTPPG-GLGVMEGKALLMKYLGGID---AVPICID--SKNKEGKND- 147
Query: 234 LYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI------VQFEDFQMKWAFETLERYRK 287
D +E V + I + ED ++ L+ R+
Sbjct: 148 ------------------PDAVIEFV-----QRIQHTFGAINLEDISQPNCYKILDVLRE 184
Query: 288 RFCM----FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343
++DD QGTA V LAGLL ++ D + ++V +GAGS+ L++ V
Sbjct: 185 S--CDIPVWHDDQQGTASVTLAGLLNALKLVK---KDIHECRMVFIGAGSSNTTCLRLIV 239
Query: 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA-SLLE 402
A A K + D G + R+++ + K S+ E
Sbjct: 240 TAGAD---------PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAE 290
Query: 403 VVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461
VL+ LS G GV E +K+M E KP +F +NP E +A K A
Sbjct: 291 ACVGA--DVLISLSTPGPGVVKAEWIKSMGE----KPIVFCCANPV--PEIYPYEA-KEA 341
Query: 462 GENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
G IV G+ NQ NN FPGI G L+ AR ITD M A+
Sbjct: 342 GAYIV------------ATGRGDFPNQVNNSVGFPGILKGALIVRARKITDNMAIAASR 388
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 6e-28
Identities = 97/358 (27%), Positives = 149/358 (41%), Gaps = 90/358 (25%)
Query: 176 VLTDGSRILGLGDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDR 233
V++DG+ +LGLGD+G + +P+ GK ++ A AG++ +P++LD T +
Sbjct: 70 VISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLD--TKD------- 116
Query: 234 LYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI------VQFEDFQMKWAFETLERYRK 287
+E + V KA+ + ED FE +R K
Sbjct: 117 ------------------TEEIISIV-----KALAPTFGGINLEDISAPRCFEIEQRLIK 153
Query: 288 RFCM--FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345
+ F+DD GTA V LA + +++ + IVV G GSAGL + + + A
Sbjct: 154 ECHIPVFHDDQHGTAIVVLAAIFNSLKLLK---KSLDEVSIVVNGGGSAGLSITRKLLAA 210
Query: 346 AARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAK--DPGDFMGLREGASLLE 402
A K ++DK G+I ++ L P AK + G +L +
Sbjct: 211 GAT-----------KVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSG-----TLED 254
Query: 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG 462
+ + +G+S GV E + M +P IFAM+NP E +A AG
Sbjct: 255 ALEGA--DIFIGVS-APGVLKAEWISKMAA----RPVIFAMANPI--PEIYPDEA-LEAG 304
Query: 463 ENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
IV G G+ NQ NN+ FPGI G L + A+ IT M AA+
Sbjct: 305 AYIV------------GTGRSDFPNQINNVLAFPGIFRGALDARAKTITVEMQIAAAK 350
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-26
Identities = 86/359 (23%), Positives = 138/359 (38%), Gaps = 92/359 (25%)
Query: 176 VLTDGSRILGLGDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDR 233
V++DGS +LGLG++G G +P+ GK ++ A A I+ P+ L +
Sbjct: 74 VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLS--ESE------- 120
Query: 234 LYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI------VQFEDFQMKWAFETLERYRK 287
++ + V K++ + ED F L+R +
Sbjct: 121 ------------------EEKIISIV-----KSLEPSFGGINLEDIGAPKCFRILQRLSE 157
Query: 288 RFCM--FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345
+ F+DD QGTA V A L ++ + K+VV G G+AG ++K +
Sbjct: 158 EMNIPVFHDDQQGTAVVVSAAFLNALKLTE---KKIEEVKVVVNGIGAAGYNIVKFLLDL 214
Query: 346 AARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAAAPFAK--DPGDFMGLREGASLL 401
+ +D+ G++ + L+ A+ +P G L
Sbjct: 215 GVK-----------NVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSG-----DLE 258
Query: 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461
+ +G+S G + E +K M KP IFA++NP E A + A
Sbjct: 259 TALEGA--DFFIGVS-RGNILKPEWIKKMSR----KPVIFALANPV--PEIDPELA-REA 308
Query: 462 GENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
G IV G+ H NQ NN+ FPGI G + ++ IT ML A E
Sbjct: 309 GAFIV------------ATGRSDHPNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVE 354
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 92/366 (25%), Positives = 144/366 (39%), Gaps = 97/366 (26%)
Query: 176 VLTDGSRILGLGDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDR 233
V++DGSRILGLG++G G+P+ GK ++ G++ P+M+
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGVD---AFPIMIK--EQE------- 114
Query: 234 LYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAI------VQFEDFQMKWAFETLERYRK 287
++F++ V KAI + ED F LER R+
Sbjct: 115 ------------------PNKFIDIV-----KAIAPTFGGINLEDIASPKCFYILERLRE 151
Query: 288 RFCM----FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343
+ F+DD QGTA V LAGLL ++ G ++ + + GAG+AG L++
Sbjct: 152 E--LDIPVFHDDQQGTAAVVLAGLLNALKVVG---KKISEITLALFGAGAAGFATLRILT 206
Query: 344 QAAARMAGNNDAFARNKFFLLDKD---GLITKERK---NLDPAAAPFAK--DPGDFMGLR 395
+A + +++ I L P K + + G
Sbjct: 207 EAGVK---------PENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEG-- 255
Query: 396 EGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 454
E ++ VL+ + GV + ++ M E +F ++NP E
Sbjct: 256 ---GPQEALKDA--DVLISFTRPGPGVIKPQWIEKMNE----DAIVFPLANPV--PEILP 304
Query: 455 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGM 514
+A K AG IV G+ + NQ NN+ FPGI G L AR ITD M
Sbjct: 305 EEA-KKAGARIV------------ATGRSDYPNQINNLLGFPGIFRGALDVRARTITDSM 351
Query: 515 LQQAAE 520
+ AA+
Sbjct: 352 IIAAAK 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 3e-09
Identities = 91/596 (15%), Positives = 180/596 (30%), Gaps = 175/596 (29%)
Query: 47 FPLTERDRLGLRGLLPPRVISFEQQYAR------FMESFRSLEKNTE-----GQPNKVVS 95
F E + +L FE + + +S+ E + V
Sbjct: 9 FETGEHQ-YQYKDILS----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 96 LAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAK 155
R+ L + E + + + + ++ + +P + + S MY +
Sbjct: 64 T--LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSM----MTRMYIEQR 116
Query: 156 DKGEMMSMIYN----WPAQQV----DMIVLTDGSRILGL---GDLGVQG-IGIPIGK--L 201
D+ +YN + V + L +L L ++ + G +G GK +
Sbjct: 117 DR------LYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLG--SGKTWV 166
Query: 202 DVYVAAAGINPQRILPVM------LDVGTNNQK--LLE--DRLYLGLRQPRLEGEEYLSI 251
A ++ M L++ N +LE +L + ++ S
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 252 VDEFMEAVHAR---------WPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGV 302
+ + ++ A + ++ + Q A+ F ++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-------F-----NLS----- 265
Query: 303 ALAGLLGTVRAQGLSLTDFAD---QKIVVVGAGSAGLG----------VLKMAVQA---- 345
+L T R + +TDF + + S L L Q
Sbjct: 266 --CKILLTTRFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 346 ------------AARMAGNNDAFARNKFFL-LDKDGLITKERKNLDPAAAPFAKDPGDFM 392
A + D A + ++ D L T +L+ +P ++
Sbjct: 322 VLTTNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTIIESSLN------VLEPAEY- 371
Query: 393 GLREGASLLEVVRK-VK-PHVLLGL-------SGVGGVFNEEVLKAMRESDSVKPAIFAM 443
R+ L V P +LL L S V V N+ ++ E K + ++
Sbjct: 372 --RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISI 428
Query: 444 SNPTMNAECTAADAFK-HAGENIV--FASGSPFENVDLGNGK--------IGH----VNQ 488
+ + + + + H +IV + F++ DL IGH +
Sbjct: 429 PSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 489 ANNMYLFPGIGL------------GTLLSGARFITDGMLQQAAEW--YVCDNCNEP 530
M LF + L T + + I + LQQ + Y+CDN +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKY 541
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 533 | |||
| 1gq2_A | 555 | Malic enzyme; oxidoreductase, pigeon liver, NADP-d | 100.0 | |
| 1pj3_A | 564 | NAD-dependent malic enzyme, mitochondrial; oxidati | 100.0 | |
| 1o0s_A | 605 | NAD-ME, NAD-dependent malic enzyme; oxidoreductase | 100.0 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 100.0 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 100.0 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 100.0 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 100.0 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.98 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.94 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.66 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.07 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.06 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.63 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.12 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.76 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.69 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 96.46 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.39 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.18 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 96.11 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 96.05 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.96 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.93 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.85 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.64 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.52 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.51 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.47 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.19 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 95.15 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 95.11 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.94 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 94.73 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.4 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.32 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 94.23 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 93.96 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 93.92 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 93.88 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.71 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 93.7 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.64 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 93.62 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 93.13 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 93.06 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 92.93 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 92.85 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 92.81 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.78 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 92.76 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.72 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 92.68 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 92.59 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 92.45 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 92.41 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 92.28 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 92.27 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 92.15 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 92.12 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 92.07 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.07 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 92.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 91.99 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 91.99 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 91.98 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 91.9 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 91.45 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 91.39 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 91.39 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 91.35 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 91.33 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 91.33 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.32 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 91.3 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 91.28 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 91.1 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 91.07 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 90.96 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 90.91 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.78 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 90.75 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 90.72 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 90.67 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 90.6 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 90.34 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 90.34 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 90.31 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 90.17 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 90.13 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.96 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 89.94 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 89.92 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 89.91 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 89.87 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 89.72 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 89.5 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 89.48 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.46 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 89.46 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 89.38 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 89.18 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 89.16 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 89.1 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 89.05 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.98 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 88.83 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 88.64 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 88.47 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 88.43 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 88.03 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 87.98 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.87 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 87.69 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 87.65 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 87.59 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 87.53 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 87.53 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 87.46 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 87.46 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 87.38 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 87.28 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 87.08 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 86.96 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 86.93 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 86.9 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 86.83 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.8 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 86.77 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 86.73 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 86.7 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 86.62 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 86.39 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 86.0 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 85.99 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 85.86 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 85.77 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.72 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 85.64 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 85.62 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 85.55 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 85.35 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 85.33 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 85.29 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 85.18 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 85.16 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 85.02 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 84.89 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 84.77 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 84.62 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 84.62 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 84.61 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 84.51 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 84.49 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 84.46 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 84.41 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 84.24 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 84.22 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 84.17 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 84.09 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 83.91 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 83.89 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 83.72 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 83.72 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 83.46 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 83.26 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 83.18 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 83.18 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 83.17 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 83.01 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 82.94 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 82.94 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 82.86 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 82.8 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 82.8 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 82.67 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 82.58 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 82.54 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 82.49 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 82.43 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 82.25 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 82.25 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 82.08 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 82.03 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 82.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 81.8 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 81.57 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 81.55 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 81.39 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 81.38 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 81.25 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 81.22 | |
| 3pdi_B | 458 | Nitrogenase MOFE cofactor biosynthesis protein NI; | 80.91 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 80.69 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 80.21 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 80.07 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 80.05 |
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-191 Score=1518.86 Aligned_cols=479 Identities=44% Similarity=0.812 Sum_probs=470.3
Q ss_pred CccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcccc
Q 009519 31 RGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNE 110 (533)
Q Consensus 31 ~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~Ne 110 (533)
+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++||++||
T Consensus 2 ~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~L~~L~~~Ne 71 (555)
T 1gq2_A 2 KGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLT----------SDLDRYILLMSLQDRNE 71 (555)
T ss_dssp CTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCH
T ss_pred ChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHhcCcce
Confidence 69999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred hhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 009519 111 TLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLG 190 (533)
Q Consensus 111 ~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG 190 (533)
+||||++.+|++|+|||+||||||++|++||++||+|+|+|||++|+++++++++|||.++|++||||||||||||||||
T Consensus 72 ~Lfy~ll~~~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G 151 (555)
T 1gq2_A 72 KLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLG 151 (555)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCG
T ss_pred eeehhhHhhhHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CCceee
Q 009519 191 VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIVQ 269 (533)
Q Consensus 191 ~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P~~~I~ 269 (533)
++||+|||||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+.+| |+++||
T Consensus 152 ~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~ 231 (555)
T 1gq2_A 152 CYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQ 231 (555)
T ss_dssp GGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred eecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 009519 270 FEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (533)
Q Consensus 270 ~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (533)
||||+++|||+||+|||++||||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ +
T Consensus 232 ~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d---~riv~~GAGaAg~gia~ll~~~~~-~ 307 (555)
T 1gq2_A 232 FEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSD---HTVLFQGAGEAALGIANLIVMAMQ-K 307 (555)
T ss_dssp ECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGG---CCEEEECCSHHHHHHHHHHHHHHH-H
T ss_pred ecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999 6
Q ss_pred cCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHH
Q 009519 350 AGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (533)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~ 429 (533)
+|+|+|||++||||||++|||+++|++|+++|++||+++++ .++|+|||+++|||||||+|+++|+|||||||+
T Consensus 308 ~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~~~------~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~ 381 (555)
T 1gq2_A 308 EGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCE------MKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQD 381 (555)
T ss_dssp HTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCC------CCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHH
T ss_pred cCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhcCC------CCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHH
Confidence 79999999999999999999999998899999999998643 368999999999999999999999999999999
Q ss_pred hhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcc
Q 009519 430 MRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARF 509 (533)
Q Consensus 430 Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~ 509 (533)
||+ +|+|||||||||||++|||+||||++||+|+|||||||||+||+|++||+++||||||+|+|||||||+++++|++
T Consensus 382 Ma~-~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~liFPGi~~Gal~~~A~~ 460 (555)
T 1gq2_A 382 MAA-FNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKH 460 (555)
T ss_dssp HHH-HCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSS
T ss_pred HHh-cCCCCEEEECCCCCCccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEeccccccceeeccchhhhhHhcCCeE
Confidence 975 9999999999999999999999999999999999999999999997799999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCC
Q 009519 510 ITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 510 Itd~M~~aAA~alA~~v~~~~ 530 (533)
|||+|+++||++||+++++++
T Consensus 461 Itd~M~~aAA~alA~~v~~~~ 481 (555)
T 1gq2_A 461 IGDDVFLTTAEVIAQEVSEEN 481 (555)
T ss_dssp CCHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHHhcccccc
Confidence 999999999999999998753
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-190 Score=1516.10 Aligned_cols=483 Identities=42% Similarity=0.787 Sum_probs=472.2
Q ss_pred ccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcc
Q 009519 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (533)
Q Consensus 29 ~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~ 108 (533)
..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++||++
T Consensus 2 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~L~~L~~~ 71 (564)
T 1pj3_A 2 KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT----------SPLEKYIYIMGIQER 71 (564)
T ss_dssp CCCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCC----------SHHHHHHHHHHHHTT
T ss_pred CCchHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCC
Q 009519 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (533)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (533)
||+||||++.+|++|+|||+||||||++|++||++||+|+|+|||++|+++++++++|||.++|++||||||||||||||
T Consensus 72 Ne~Lfy~ll~~~~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD 151 (564)
T 1pj3_A 72 NEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGD 151 (564)
T ss_dssp CHHHHHHHHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCC
T ss_pred cceeehhhhhhCHHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CCce
Q 009519 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (533)
Q Consensus 189 lG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P~~~ 267 (533)
||++||+||+||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|+.+| |+++
T Consensus 152 ~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG~~~~ 231 (564)
T 1pj3_A 152 LGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTL 231 (564)
T ss_dssp CGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred eeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHH
Q 009519 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (533)
Q Consensus 268 I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 347 (533)
||||||+++|||+||+|||++||||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 232 I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d---~riv~~GAGaAgigia~ll~~~m~ 308 (564)
T 1pj3_A 232 IQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISE---HKILFLGAGEAALGIANLIVMSMV 308 (564)
T ss_dssp EEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGG---CCEEEECCSHHHHHHHHHHHHHHH
T ss_pred EeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhH---cEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHH
Q 009519 348 RMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (533)
Q Consensus 348 ~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteev 426 (533)
++|+|+|||++||||||++|||+++| ++|+++|++||++++++ ..++|+|||+.+|||||||+|+++|+|||||
T Consensus 309 -~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~----~~~~L~eav~~vkp~vlIG~S~~~g~ft~ev 383 (564)
T 1pj3_A 309 -ENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPES----IPDTFEDAVNILKPSTIIGVAGAGRLFTPDV 383 (564)
T ss_dssp -HTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSS----CCSSHHHHHHHHCCSEEEECCCSSCCSCHHH
T ss_pred -HcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCcc----ccCCHHHHHhhcCCCEEEEeCCCCCCCCHHH
Confidence 68999999999999999999999999 78999999999987642 1368999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhC
Q 009519 427 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506 (533)
Q Consensus 427 v~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~ 506 (533)
||+||+ +|+|||||||||||++|||+||||++||+|+|||||||||+||+|++||+++||||||+|+|||||||+++++
T Consensus 384 v~~Ma~-~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~NN~liFPGi~~Gal~~~ 462 (564)
T 1pj3_A 384 IRAMAS-INERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCN 462 (564)
T ss_dssp HHHHHH-HCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHTT
T ss_pred HHHHHh-cCCCCEEEECCCCCCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceecccccceeeeccchhhhhHhcC
Confidence 999975 9999999999999999999999999999999999999999999996699999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHhcccCCCC
Q 009519 507 ARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 507 a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
|++|||+|+++||++||+++++++
T Consensus 463 A~~Itd~M~~aAA~aLA~~v~~~~ 486 (564)
T 1pj3_A 463 TRHISDSVFLEAAKALTSQLTDEE 486 (564)
T ss_dssp CSCCCHHHHHHHHHHHHTTCCHHH
T ss_pred CeECCHHHHHHHHHHHHhhccccc
Confidence 999999999999999999998753
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-190 Score=1520.05 Aligned_cols=487 Identities=45% Similarity=0.800 Sum_probs=475.0
Q ss_pred CCCceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHH
Q 009519 22 IPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRI 101 (533)
Q Consensus 22 ~~~~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~ 101 (533)
...++.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+|
T Consensus 29 ~~~~~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~----------~~l~k~~~ 98 (605)
T 1o0s_A 29 RPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQP----------NDLARYIQ 98 (605)
T ss_dssp SCCCCCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSS----------SHHHHHHH
T ss_pred CCCccccCcchHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCC----------CcHHHHHH
Confidence 33455667899999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCCh--hhHHHHHhcCCCCCeeEEEEec
Q 009519 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDK--GEMMSMIYNWPAQQVDMIVLTD 179 (533)
Q Consensus 102 L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~--~~i~~~l~n~p~~~v~viVVTD 179 (533)
|++||++||+||||++.+|++|+|||+||||||++|++||++||+|+|+|||++|+ ++++++++|||.++|++|||||
T Consensus 99 L~~L~~~Ne~Lfyrll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~~~i~~~l~n~~~~~~~v~VVTD 178 (605)
T 1o0s_A 99 LDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTD 178 (605)
T ss_dssp HHHHHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEEC
T ss_pred HHHhhcccchhhhhhhhhCHHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCcccchHHHHHhcCCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CceeeccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHH
Q 009519 180 GSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAV 259 (533)
Q Consensus 180 G~rILGLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av 259 (533)
|||||||||||++||+|||||++|||+||||||++|||||||+|||||+||+||+||||||+|++|++||+|+||||++|
T Consensus 179 G~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~Rv~g~~Yd~fvdefv~av 258 (605)
T 1o0s_A 179 GERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKAC 258 (605)
T ss_dssp SSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHH
T ss_pred cccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHH
Q 009519 260 HARW-PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGV 338 (533)
Q Consensus 260 ~~~~-P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~Gi 338 (533)
+.+| |+++||||||+++|||+||+|||++||||||||||||+|+||||+||+|++|++|+| |||||+|||+||+||
T Consensus 259 ~~~fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d---~riv~~GAGaAgigi 335 (605)
T 1o0s_A 259 TKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQ---EKYLFFGAGAASTGI 335 (605)
T ss_dssp HHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGG---CCEEEECCSHHHHHH
T ss_pred HHHhCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHH
Confidence 9999 899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccC
Q 009519 339 LKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 339 A~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
|+||+++|+ ++|+|++||++||||||++|||+++|++|+++|++||+++++ .++|+|||+.+|||||||+|++
T Consensus 336 a~ll~~~m~-~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~~------~~~L~eav~~vkpdVlIG~S~~ 408 (605)
T 1o0s_A 336 AEMIVHQMQ-NEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPE------TTSILEVIRAARPGALIGASTV 408 (605)
T ss_dssp HHHHHHHHH-TTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCC------CCCHHHHHHHHCCSEEEECSSC
T ss_pred HHHHHHHHH-HcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcCC------CCCHHHHHhhcCCCEEEEecCC
Confidence 999999999 789999999999999999999999998899999999998643 3689999999999999999999
Q ss_pred CCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhh
Q 009519 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 419 ~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
+|+|||||||+||+ +|+|||||||||||++|||+||||++||+|+|||||||||+||+| +||+++||||||+|+||||
T Consensus 409 ~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF~pV~~-~Grs~~pnQ~NN~liFPGi 486 (605)
T 1o0s_A 409 RGAFNEEVIRAMAE-INERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFPGV 486 (605)
T ss_dssp TTCSCHHHHHHHHH-HCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEE-TTEEECCEECCGGGTHHHH
T ss_pred CCCCCHHHHHHHHh-cCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCCCCeeE-CCEEeccccccceeeccch
Confidence 99999999999975 999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred hHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 499 GLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 499 glG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
|||+++++|++|||+|+++||++||+++++++
T Consensus 487 ~lGal~~~A~~Itd~M~~aAA~aLA~~v~~~~ 518 (605)
T 1o0s_A 487 ALGTILFQIRHVDNDLFLLAAKKVASCVTEDS 518 (605)
T ss_dssp HHHHHHHTBSCCCHHHHHHHHHHHHHTCCHHH
T ss_pred hhhhhhcCCeEcCHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999998754
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-115 Score=923.30 Aligned_cols=346 Identities=26% Similarity=0.355 Sum_probs=317.9
Q ss_pred hcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 009519 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (533)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILG 185 (533)
..+-+. --++.+++.+| ||++||||||++|++|+ +|++++++++.+| ++||||||||||||
T Consensus 44 ~GKi~v-~~~~~~~~~~d-LslaYTPgVa~~c~~i~-------------~dp~~~~~yt~kg----n~VaVVTDG~aILG 104 (487)
T 3nv9_A 44 KGKIQI-MPKCTLAGFNW-FNAYYTPGVSRISTNIR-------------DNNDSSLFYSLRG----NFVGVVSDSTRVLG 104 (487)
T ss_dssp TSSEEE-EECSCCSSGGG-HHHHSTTTHHHHHHHHH-------------HCGGGHHHHSGGG----GEEEEEECSSSBGG
T ss_pred CCeEEE-EecCCCCCHHH-CeeeeCcchHHHHHHHH-------------hChHHHhhhcccC----CEEEEEEcCceeee
Confidence 455444 36778888888 89999999999999998 7899999888866 69999999999999
Q ss_pred cCCCCC-CcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 009519 186 LGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (533)
Q Consensus 186 LGDlG~-~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P 264 (533)
|||||+ +||||||||++|||+||||| |||||||+||+| +++| +||||++|+.+||
T Consensus 105 LGDiG~~agmpImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d-------------------~defve~v~~~~P 160 (487)
T 3nv9_A 105 DGDVTPPGGLGVMEGKALLMKYLGGID---AVPICIDSKNKE--GKND-------------------PDAVIEFVQRIQH 160 (487)
T ss_dssp GBCCCGGGGHHHHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBC-------------------HHHHHHHHHHHGG
T ss_pred ccccccccCCchhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCC-------------------HHHHHHHHHHhCC
Confidence 999999 79999999999999999999 999999999866 4566 5999999999999
Q ss_pred Cc-eeeeecCCCchHHHHHHHHhc--cCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHH
Q 009519 265 KA-IVQFEDFQMKWAFETLERYRK--RFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (533)
Q Consensus 265 ~~-~I~~EDf~~~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (533)
++ +||||||++||||+||+|||+ .||||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+|
T Consensus 161 ~fG~InlEDf~ap~af~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d---~riV~~GAGaAGigia~l 237 (487)
T 3nv9_A 161 TFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHE---CRMVFIGAGSSNTTCLRL 237 (487)
T ss_dssp GCSEEEECSCCTTHHHHHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGG---CCEEEECCSHHHHHHHHH
T ss_pred CCCeecHhhcCCchHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHH
Confidence 98 999999999999999999999 589999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC-----ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec
Q 009519 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-----DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (533)
Q Consensus 342 l~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l-----~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (533)
|+. .|+++ +||||||++|||+++|++| .++|.+||+.+++ ....+|+|||++ +|||||+|
T Consensus 238 l~~-----~G~~~----~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~----~~~~~L~eav~~--adVlIG~S 302 (487)
T 3nv9_A 238 IVT-----AGADP----KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNP----SKFGSIAEACVG--ADVLISLS 302 (487)
T ss_dssp HHH-----TTCCG----GGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCT----TCCCSHHHHHTT--CSEEEECC
T ss_pred HHH-----cCCCc----ccEEEEeccccccCCcchhhhhcccHHHHHHHHhccc----ccCCCHHHHHhc--CCEEEEec
Confidence 974 58886 8999999999999999777 4467788987643 145789999999 79999999
Q ss_pred cC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeec
Q 009519 417 GV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLF 495 (533)
Q Consensus 417 ~~-~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iF 495 (533)
++ ||+|||||||+|+ +|||||||||||| ||+||||++ +|+|||||| |+++|||+||+|+|
T Consensus 303 ~~~pg~ft~e~V~~Ma----~~PIIFaLSNPtp--Ei~pe~A~~--~G~aIvATG-----------rsd~PnQ~NN~liF 363 (487)
T 3nv9_A 303 TPGPGVVKAEWIKSMG----EKPIVFCCANPVP--EIYPYEAKE--AGAYIVATG-----------RGDFPNQVNNSVGF 363 (487)
T ss_dssp CSSCCCCCHHHHHTSC----SSCEEEECCSSSC--SSCHHHHHH--TTCSEEEES-----------CTTSSSBCCGGGTH
T ss_pred ccCCCCCCHHHHHhhc----CCCEEEECCCCCc--cCCHHHHHH--hCCEEEEEC-----------CCCCcccCcceeEc
Confidence 76 7999999999994 7999999999998 999999998 699999996 77889999999999
Q ss_pred hhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 496 PGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 496 PGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
||||||++++||++|||+|+++||++||++++++.+
T Consensus 364 PGI~~Gal~~~A~~Itd~M~~AAA~ALA~~v~~~~l 399 (487)
T 3nv9_A 364 PGILKGALIVRARKITDNMAIAASRALAEFAEKRGI 399 (487)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred chhhHHHHHcCCcccCHHHHHHHHHHHHhhCCcccC
Confidence 999999999999999999999999999999987754
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-109 Score=865.07 Aligned_cols=339 Identities=31% Similarity=0.459 Sum_probs=313.1
Q ss_pred hcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 009519 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (533)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILG 185 (533)
..+- .+++++.+++.++ |||+||||||++|++|+ +|+++++ +|+.++++|+|||||+||||
T Consensus 19 ~gk~-~~~~~~~~~~~~~-l~i~YtP~V~~~c~~i~-------------~~p~~v~----~~t~~~~~V~VvTdG~~iLG 79 (398)
T 2a9f_A 19 GGKL-EVQPKVDIKTKHD-LSIAYTPGVASVSSAIA-------------KDKTLAY----DLTTKKNTVAVISDGTAVLG 79 (398)
T ss_dssp TSSE-EEEESSCCSSHHH-HHHHSTTTTHHHHHHHH-------------HCGGGHH----HHSGGGTEEEEEECSSSCTT
T ss_pred CCeE-EEEEecccCCHHH-CeEEECchHHHHHHHHH-------------hCHHHHH----HhcccCCEEEEEECCccccC
Confidence 4443 4579999999877 79999999999999998 5888877 56668899999999999999
Q ss_pred cCCCCCC-cccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 009519 186 LGDLGVQ-GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (533)
Q Consensus 186 LGDlG~~-Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P 264 (533)
|||+|++ |||||+||+.|||+||||| ++|||||+|| +||||++|+.+||
T Consensus 80 LGD~G~~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~p 129 (398)
T 2a9f_A 80 LGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALAP 129 (398)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHGG
T ss_pred CCCcccccCCcchhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcCC
Confidence 9999996 9999999999999999999 9999999984 7999999999999
Q ss_pred C-ceeeeecCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHH
Q 009519 265 K-AIVQFEDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (533)
Q Consensus 265 ~-~~I~~EDf~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (533)
+ .+||||||++||||++|+|||++ +|||||||||||+|+|||++||+|++|++++| +||||+|||+||+|||++
T Consensus 130 ~F~~I~lED~~~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d---~kVVi~GAGaAG~~iA~l 206 (398)
T 2a9f_A 130 TFGGINLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDE---VSIVVNGGGSAGLSITRK 206 (398)
T ss_dssp GCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTS---CEEEEECCSHHHHHHHHH
T ss_pred ceeEeccccCCChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCc---cEEEEECCCHHHHHHHHH
Confidence 9 59999999999999999999997 99999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCC
Q 009519 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420 (533)
Q Consensus 342 l~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g 420 (533)
++.+ |. +|||++|++|||+++| ++|+++|++||++.+.. ....+|+|+|+. +|+|||+|+ ||
T Consensus 207 l~~~-----Ga------~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~---~~~~~L~eav~~--ADV~IG~Sa-pg 269 (398)
T 2a9f_A 207 LLAA-----GA------TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNRE---FKSGTLEDALEG--ADIFIGVSA-PG 269 (398)
T ss_dssp HHHH-----TC------CEEEEEETTEECCTTCCCSCCC---CHHHHHSCT---TCCCSCSHHHHT--TCSEEECCS-TT
T ss_pred HHHc-----CC------CeEEEEECCCcccCCccccchHHHHHHhhccCcc---cchhhHHHHhcc--CCEEEecCC-CC
Confidence 9985 53 7999999999999999 88999999999986542 235789999999 899999998 99
Q ss_pred CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhH
Q 009519 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 421 ~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
+||+|+|++|+ ++||||||||||+ ||+||||++| |++||||| |+++|||+||+|+||||||
T Consensus 270 l~T~EmVk~Ma----~~pIIfalsNPt~--E~~pe~a~~~--g~~i~atG-----------rs~~p~Q~NN~~~FPgi~~ 330 (398)
T 2a9f_A 270 VLKAEWISKMA----ARPVIFAMANPIP--EIYPDEALEA--GAYIVGTG-----------RSDFPNQINNVLAFPGIFR 330 (398)
T ss_dssp CCCHHHHHTSC----SSCEEEECCSSSC--SSCHHHHHTT--TCSEEEES-----------CTTSSSBCCGGGTHHHHHH
T ss_pred CCCHHHHHhhC----CCCEEEECCCCCc--cCCHHHHHHh--CCeEEEeC-----------CCCCCCcCCceeEcchHHH
Confidence 99999999995 8999999999997 9999999999 89999995 8999999999999999999
Q ss_pred HHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 501 GTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 501 G~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|++++||++|||+|+++||++||+++++++.+
T Consensus 331 Gal~~~a~~I~d~m~~aAa~alA~~~~~~~~~ 362 (398)
T 2a9f_A 331 GALDARAKTITVEMQIAAAKGIASLVPDDALS 362 (398)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHTCSSCSSC
T ss_pred HHHHcCCcCCCHHHHHHHHHHHHhcCCcccCC
Confidence 99999999999999999999999999987654
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-104 Score=825.30 Aligned_cols=332 Identities=27% Similarity=0.415 Sum_probs=309.6
Q ss_pred hcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 009519 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (533)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILG 185 (533)
..+- .+++++.+++.++ |||+||||||++|++|+ .|+++++ +|+.++++|+|||||+||||
T Consensus 23 ~gk~-~~~~~~~~~~~~~-l~i~YtP~V~~~c~~~~-------------~~p~~v~----~~t~~~~~V~VvTdg~~vLG 83 (388)
T 1vl6_A 23 KGKI-RTALPVEKVDRET-LSLLYTPGVADVARACA-------------EDPEKTY----VYTSRWNTVAVVSDGSAVLG 83 (388)
T ss_dssp TCSC-EEECSCSCCCHHH-HHHHSTTTHHHHHHHHH-------------HCGGGHH----HHSGGGGEEEEEECSTTBTT
T ss_pred CCeE-EEEEeeecCCHHH-CeEEECchHHHHHHHHH-------------hCHHHHH----hhcccCCeEEEEECCccccC
Confidence 4443 4579999999988 79999999999999998 4777776 46668899999999999999
Q ss_pred cCCCCCC-cccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 009519 186 LGDLGVQ-GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (533)
Q Consensus 186 LGDlG~~-Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P 264 (533)
|||+|++ |||||+||+.|||+||||| ++|||||+|| +||||++|+++||
T Consensus 84 lGD~G~~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~p 133 (388)
T 1vl6_A 84 LGNIGPYGALPVMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLEP 133 (388)
T ss_dssp TBSCCHHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTGG
T ss_pred CCccccccCCcchhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcCC
Confidence 9999995 9999999999999999999 9999999984 7999999999999
Q ss_pred C-ceeeeecCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHH
Q 009519 265 K-AIVQFEDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (533)
Q Consensus 265 ~-~~I~~EDf~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (533)
+ .+||||||+++|||++|+|||++ ||||||||||||+|++||++||+|++|++++| +||||+|||+||+++|++
T Consensus 134 ~f~~i~lED~~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~---~kVVv~GAGaAG~~iAkl 210 (388)
T 1vl6_A 134 SFGGINLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEE---VKVVVNGIGAAGYNIVKF 210 (388)
T ss_dssp GCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTT---CEEEEECCSHHHHHHHHH
T ss_pred cceEeCHhhcCCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCC---cEEEEECCCHHHHHHHHH
Confidence 9 49999999999999999999997 99999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC--CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC
Q 009519 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 419 (533)
Q Consensus 342 l~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~--l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~ 419 (533)
|+.+ |. ++||++|++|||+.+|++ |+++|++||++.+.. ....+|+|+|+. +|+|||+|+ |
T Consensus 211 l~~~-----G~------~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~eav~~--ADVlIG~Sa-p 273 (388)
T 1vl6_A 211 LLDL-----GV------KNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLETALEG--ADFFIGVSR-G 273 (388)
T ss_dssp HHHH-----TC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHHHHHTT--CSEEEECSC-S
T ss_pred HHhC-----CC------CeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHHHHHcc--CCEEEEeCC-C
Confidence 9875 42 799999999999999976 999999999986542 235789999999 899999999 8
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhh
Q 009519 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499 (533)
Q Consensus 420 g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (533)
|+||+|+|++|+ ++||||+|||||+ ||+||||++| |+|||||| |+++|||+||+|+|||||
T Consensus 274 ~l~t~emVk~Ma----~~pIIfalSNPt~--E~~p~~a~~~--g~~i~atG-----------r~~~p~Q~NN~~~FPgi~ 334 (388)
T 1vl6_A 274 NILKPEWIKKMS----RKPVIFALANPVP--EIDPELAREA--GAFIVATG-----------RSDHPNQVNNLLAFPGIM 334 (388)
T ss_dssp SCSCHHHHTTSC----SSCEEEECCSSSC--SSCHHHHHHT--TCSEEEES-----------CTTSSSBCCGGGTHHHHH
T ss_pred CccCHHHHHhcC----CCCEEEEcCCCCC--CCCHHHHHHh--cCeEEEeC-----------CCCCCCcCCceeEcchHh
Confidence 999999999995 7999999999997 9999999999 89999995 899999999999999999
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHhccc
Q 009519 500 LGTLLSGARFITDGMLQQAAEWYVCDN 526 (533)
Q Consensus 500 lG~l~~~a~~Itd~M~~aAA~alA~~v 526 (533)
||++++||+ |||+|+++||++||+++
T Consensus 335 ~Gal~~~a~-i~~~m~~aAa~alA~~~ 360 (388)
T 1vl6_A 335 KGAVEKRSK-ITKNMLLSAVEAIARSC 360 (388)
T ss_dssp HHHHHHCSC-CCHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCc-cCHHHHHHHHHHHHhhh
Confidence 999999999 99999999999999998
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-78 Score=639.97 Aligned_cols=334 Identities=29% Similarity=0.469 Sum_probs=304.2
Q ss_pred hhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 009519 111 TLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLG 190 (533)
Q Consensus 111 ~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG 190 (533)
..++++.+++.++ |||+||||||++|++|+ +|++++++ |+.++|+++|||||+|||||||+|
T Consensus 21 ~~~~~~~~~~~~~-l~~~YtP~v~~~c~~~~-------------~~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG 82 (439)
T 2dvm_A 21 EVIPKVSLESREE-LTLAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLVAVVSDGSRILGLGNIG 82 (439)
T ss_dssp EEEESSCCCSHHH-HHHHSTTTTHHHHHHHH-------------HCGGGHHH----HSSGGGEEEEEECSTTBTTTBCCC
T ss_pred EEEEeeccCCHHH-CeeEECchhHHHHHHHH-------------HCHHHHHh----hcccCcEEEEEECCCeEeccccee
Confidence 3468999999977 79999999999999999 59998887 555789999999999999999999
Q ss_pred CC-cccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-ee
Q 009519 191 VQ-GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IV 268 (533)
Q Consensus 191 ~~-Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I 268 (533)
.+ ++|+|+||+.||++||||| ++|++||+ +| +|||+++|+.++|++ +|
T Consensus 83 ~hS~sPvmh~ka~lf~~~gGid---~~yi~ldv--------~d-------------------~de~~~~v~~l~~~f~Gi 132 (439)
T 2dvm_A 83 PLAGLPVMEGKALLFKRFGGVD---AFPIMIKE--------QE-------------------PNKFIDIVKAIAPTFGGI 132 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCE---EEEEECSC--------CS-------------------HHHHHHHHHHTGGGCSEE
T ss_pred ccccCHHHHHHHHHHHHhCCCC---Ceeeeeec--------CC-------------------HHHHHHHHHHhCccCcEE
Confidence 95 9999999999999999999 99999999 23 699999999999995 99
Q ss_pred eeecCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHH
Q 009519 269 QFEDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAA 346 (533)
Q Consensus 269 ~~EDf~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~ 346 (533)
|||||+.|+||++|++|++. +||||||+||||.+.++|+++|++.+|+++++ +|+||+|||+||.+|+.+|.++
T Consensus 133 nvED~T~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~---~rvlvlGAGgAg~aia~~L~~~- 208 (439)
T 2dvm_A 133 NLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISE---ITLALFGAGAAGFATLRILTEA- 208 (439)
T ss_dssp EECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTT---CCEEEECCSHHHHHHHHHHHHT-
T ss_pred EEEeCCCchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccC---CEEEEECccHHHHHHHHHHHHc-
Confidence 99999999999999999985 89999999999999999999999999999999 9999999999999999999864
Q ss_pred HHHcCCChhhhcCeEEEEe----ccCccccCCCC---CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC
Q 009519 347 ARMAGNNDAFARNKFFLLD----KDGLITKERKN---LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 419 (533)
Q Consensus 347 ~~~~Gls~~eA~~~i~lvD----~~GLi~~~r~~---l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~ 419 (533)
|.++ ++||++| ++||++++ ++ |.++|.+|++..+.. ....+|.|+++. +|+|||+|+.+
T Consensus 209 ----G~~~----~~I~vvd~~~~R~G~~~~a-~~~~~L~~~~~~~a~~~~~~---~~~~~L~e~l~~--aDVlInaT~~~ 274 (439)
T 2dvm_A 209 ----GVKP----ENVRVVELVNGKPRILTSD-LDLEKLFPYRGWLLKKTNGE---NIEGGPQEALKD--ADVLISFTRPG 274 (439)
T ss_dssp ----TCCG----GGEEEEEEETTEEEECCTT-SCHHHHSTTCHHHHTTSCTT---CCCSSHHHHHTT--CSEEEECSCCC
T ss_pred ----CCCc----CeEEEEEccCCCcCccccc-cchhHHHHHHHHHhhccccc---cccccHHHHhcc--CCEEEEcCCCc
Confidence 6653 6899999 99999887 45 788888888754321 124679999988 89999999975
Q ss_pred -CCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhh
Q 009519 420 -GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 420 -g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
|+|++++++.|+ ++||||+||||++ ||++++|++| |++++||| +++.|+|+||+|+||||
T Consensus 275 ~G~~~~e~v~~m~----~~~iVfDLynP~~--t~~~~~A~~~--G~~ivatG-----------~~ml~~Q~nn~~~FPGi 335 (439)
T 2dvm_A 275 PGVIKPQWIEKMN----EDAIVFPLANPVP--EILPEEAKKA--GARIVATG-----------RSDYPNQINNLLGFPGI 335 (439)
T ss_dssp SSSSCHHHHTTSC----TTCEEEECCSSSC--SSCHHHHHHH--TCSEECBS-----------CSSSSSBCCGGGTHHHH
T ss_pred cCCCChHHHHhcC----CCCEEEECCCCCC--cchHHHHHHc--CCeEEcCC-----------CchhHHHHHHHhcccCc
Confidence 999999999994 7999999999998 9999999998 78999985 88999999999999999
Q ss_pred hHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 499 GLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 499 glG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
|+|++++||++|||+|+++||++||+++.++
T Consensus 336 ~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~ 366 (439)
T 2dvm_A 336 FRGALDVRARTITDSMIIAAAKAIASIVEEP 366 (439)
T ss_dssp HHHHHHTTCSCCCHHHHHHHHHHHHHTSSSC
T ss_pred hHHHHhcCCCCCCHHHHHHHHHHHHhhCccc
Confidence 9999999999999999999999999999764
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=114.92 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=117.5
Q ss_pred HHHHHHHHhCCCceeeeecCCC--ch-HHHHHHHHh---ccCcee----------ccCcchhHHHHHHHHHHHHHHhCCC
Q 009519 254 EFMEAVHARWPKAIVQFEDFQM--KW-AFETLERYR---KRFCMF----------NDDIQGTAGVALAGLLGTVRAQGLS 317 (533)
Q Consensus 254 efv~av~~~~P~~~I~~EDf~~--~~-af~iL~ryr---~~~~~F----------nDDiQGTaaV~LAgli~Alr~~g~~ 317 (533)
.++..++..||+.+=++--++- .. ..|+-+..+ -.+|+| +|+++||+.+++.+++. .++..
T Consensus 132 dl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~ 208 (436)
T 3h9u_A 132 DLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVM 208 (436)
T ss_dssp HHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCC
T ss_pred HHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCc
Confidence 4556667777765322211111 12 223322222 238999 89999999999999965 56888
Q ss_pred CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCC
Q 009519 318 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREG 397 (533)
Q Consensus 318 l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~ 397 (533)
+.. .+++|+|.|..|.++|+.+..+ |. +++++|++ +.+...|.... ...
T Consensus 209 L~G---ktVgIiG~G~IG~~vA~~Lka~-----Ga-------~Viv~D~~-----------p~~a~~A~~~G-----~~~ 257 (436)
T 3h9u_A 209 IAG---KTACVCGYGDVGKGCAAALRGF-----GA-------RVVVTEVD-----------PINALQAAMEG-----YQV 257 (436)
T ss_dssp CTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC-----------HHHHHHHHHTT-----CEE
T ss_pred ccC---CEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEECCC-----------hhhhHHHHHhC-----Cee
Confidence 888 9999999999999999998765 43 68888873 22222222211 123
Q ss_pred CCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhc
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~ 459 (533)
.+|.|+++. .|++|.+++..++++++.++.|. +..||+-.|++.. |+.++.+.+
T Consensus 258 ~sL~eal~~--ADVVilt~gt~~iI~~e~l~~MK----~gAIVINvgRg~v--EID~~~L~~ 311 (436)
T 3h9u_A 258 LLVEDVVEE--AHIFVTTTGNDDIITSEHFPRMR----DDAIVCNIGHFDT--EIQVAWLKA 311 (436)
T ss_dssp CCHHHHTTT--CSEEEECSSCSCSBCTTTGGGCC----TTEEEEECSSSGG--GBCHHHHHH
T ss_pred cCHHHHHhh--CCEEEECCCCcCccCHHHHhhcC----CCcEEEEeCCCCC--ccCHHHHHh
Confidence 579999988 99999888778999999999994 7899999999987 999987765
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-09 Score=111.90 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=122.9
Q ss_pred CCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHH---------------------HHHhc-------cCcee-
Q 009519 242 RLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETL---------------------ERYRK-------RFCMF- 292 (533)
Q Consensus 242 R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL---------------------~ryr~-------~~~~F- 292 (533)
--+.|||...++..+.+ ....|+..| |-+..=...+- .||+. .+|+|
T Consensus 111 g~~~~ey~~~~~~~~~~-~~~~p~~il---DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~ 186 (435)
T 3gvp_A 111 GESEDDFWWCIDRCVNV-EGWQPNMIL---DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMN 186 (435)
T ss_dssp TCCHHHHHHHHHHHHCB-TTBCCSEEE---ESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEE
T ss_pred CCCHHHHHHHHHHHHhc-cCCCCcEEE---ecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCCEEE
Confidence 34678888888776531 112255544 44443333222 34443 38999
Q ss_pred ---------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 009519 293 ---------NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (533)
Q Consensus 293 ---------nDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~l 363 (533)
+|+++||+.++++|+.++ ++..+.. .+++|+|+|..|.++|+.+... |. +++.
T Consensus 187 vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~G---ktV~ViG~G~IGk~vA~~Lra~-----Ga-------~Viv 248 (435)
T 3gvp_A 187 VNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGG---KQVVVCGYGEVGKGCCAALKAM-----GS-------IVYV 248 (435)
T ss_dssp CTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEE
T ss_pred ecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecC---CEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 899999999999999765 6888888 9999999999999999988754 43 6888
Q ss_pred EeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEec
Q 009519 364 LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM 443 (533)
Q Consensus 364 vD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaL 443 (533)
+|++. .+...|.... ....+|.|+++. .|++|.+++..++++++.++.|. +..||+-.
T Consensus 249 ~D~dp-----------~ra~~A~~~G-----~~v~~Leeal~~--ADIVi~atgt~~lI~~e~l~~MK----~gailINv 306 (435)
T 3gvp_A 249 TEIDP-----------ICALQACMDG-----FRLVKLNEVIRQ--VDIVITCTGNKNVVTREHLDRMK----NSCIVCNM 306 (435)
T ss_dssp ECSCH-----------HHHHHHHHTT-----CEECCHHHHTTT--CSEEEECSSCSCSBCHHHHHHSC----TTEEEEEC
T ss_pred EeCCh-----------hhhHHHHHcC-----CEeccHHHHHhc--CCEEEECCCCcccCCHHHHHhcC----CCcEEEEe
Confidence 88642 2222222110 013579999987 99999998888999999999994 68999999
Q ss_pred CCCCCcccCCHHHH
Q 009519 444 SNPTMNAECTAADA 457 (533)
Q Consensus 444 SNPt~~aE~tpe~A 457 (533)
+++.. |+..+..
T Consensus 307 grg~~--EId~~~L 318 (435)
T 3gvp_A 307 GHSNT--EIDVASL 318 (435)
T ss_dssp SSTTT--TBTGGGG
T ss_pred cCCCc--cCCHHHH
Confidence 99977 8887654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-08 Score=102.98 Aligned_cols=227 Identities=17% Similarity=0.274 Sum_probs=135.3
Q ss_pred CChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC--CcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccC
Q 009519 155 KDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLED 232 (533)
Q Consensus 155 ~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~--~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~D 232 (533)
-+++.++++.. .+.+|+|.++++..+|++|.+. .|+.|+.+ ..+|. | +++|.+. +
T Consensus 25 ltP~~v~~L~~----~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-a---------diil~vk--------~ 81 (401)
T 1x13_A 25 ATPKTVEQLLK----LGFTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-S---------EIILKVN--------A 81 (401)
T ss_dssp CCHHHHHHHHH----TTCEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-S---------SEEECSS--------C
T ss_pred CCHHHHHHHHH----CCCEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-C---------CeEEEeC--------C
Confidence 46778888887 4578999999999999999997 49999998 67776 1 4677652 2
Q ss_pred cccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeeecCCCchHHHHHHHHhcc-Cceec-cCc------c----hh
Q 009519 233 RLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFEDFQMKWAFETLERYRKR-FCMFN-DDI------Q----GT 299 (533)
Q Consensus 233 P~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~EDf~~~~af~iL~ryr~~-~~~Fn-DDi------Q----GT 299 (533)
| .+|.++.+ -|+. +|-+=..+. .-..++.++++ +++|+ |.+ | .+
T Consensus 82 p------------------~~~~i~~l---~~~~~li~~~~~~~--d~~~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~ 138 (401)
T 1x13_A 82 P------------------LDDEIALL---NPGTTLVSFIWPAQ--NPELMQKLAERNVTVMAMDSVPRISRAQSLDALS 138 (401)
T ss_dssp C------------------CHHHHTTC---CTTCEEEECCCGGG--CHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHH
T ss_pred C------------------CHHHHHHh---cCCCcEEEEecCCC--CHHHHHHHHHCCCEEEEeehhhhhhhhcccchHH
Confidence 2 13333322 2432 333322222 12344555544 77773 222 2 56
Q ss_pred HHHHHHHHHHHHHHh----CCCC-------CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 300 AGVALAGLLGTVRAQ----GLSL-------TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 300 aaV~LAgli~Alr~~----g~~l-------~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
....+|| .+|++.. ++.. .++...+|+|+|+|.+|.++++++... |. +++++|++.
T Consensus 139 ~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~-----Ga-------~V~v~D~~~ 205 (401)
T 1x13_A 139 SMANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRP 205 (401)
T ss_dssp HHHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCG
T ss_pred HHHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH
Confidence 6666665 4444443 2211 023348999999999999999987654 42 688999864
Q ss_pred ccccCCCCCCh------------hhhccccccCC-cCCccCCCCHHHHhcccCCcEEEEeccC-----CCCCCHHHHHHh
Q 009519 369 LITKERKNLDP------------AAAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAM 430 (533)
Q Consensus 369 Li~~~r~~l~~------------~k~~~A~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Fteevv~~M 430 (533)
-.......+.. .+..|++...+ +. .....+|.+.++. .|++|++... +.+++++.++.|
T Consensus 206 ~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~l~e~~~~--aDvVI~~~~~pg~~ap~li~~~~l~~m 282 (401)
T 1x13_A 206 EVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFI-KAEMELFAAQAKE--VDIIVTTALIPGKPAPKLITREMVDSM 282 (401)
T ss_dssp GGHHHHHHTTCEECCC--------CCHHHHHHSHHHH-HHHHHHHHHHHHH--CSEEEECCCCTTSCCCCCBCHHHHHTS
T ss_pred HHHHHHHHcCCEEEEecccccccccccchhhccHHHH-HHHHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcC
Confidence 32110000100 00001110000 00 0001147788877 8999998533 367999999999
Q ss_pred hhcCCCCCeEEecCCCC
Q 009519 431 RESDSVKPAIFAMSNPT 447 (533)
Q Consensus 431 a~~~~erPIIFaLSNPt 447 (533)
. +..+|+-+|+|.
T Consensus 283 k----~g~vIVdva~~~ 295 (401)
T 1x13_A 283 K----AGSVIVDLAAQN 295 (401)
T ss_dssp C----TTCEEEETTGGG
T ss_pred C----CCcEEEEEcCCC
Confidence 4 688999999873
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9e-06 Score=87.59 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=98.9
Q ss_pred cCcee----------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMF----------NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~F----------nDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|+| .|+++||+..++.++. |.++..|.. .+++|.|+|..|.++|+.+... |.
T Consensus 226 ~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~G---KtVvVtGaGgIG~aiA~~Laa~-----GA----- 289 (488)
T 3ond_A 226 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAG---KVAVVAGYGDVGKGCAAALKQA-----GA----- 289 (488)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-----
T ss_pred CCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 38999 7899999999999887 688988888 9999999998888888887654 42
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+++++|++. .+...+.... ....++.++++. .|+++-.++..++++.+.++.|. +.
T Consensus 290 --~Viv~D~~~-----------~~a~~Aa~~g-----~dv~~lee~~~~--aDvVi~atG~~~vl~~e~l~~mk----~g 345 (488)
T 3ond_A 290 --RVIVTEIDP-----------ICALQATMEG-----LQVLTLEDVVSE--ADIFVTTTGNKDIIMLDHMKKMK----NN 345 (488)
T ss_dssp --EEEEECSCH-----------HHHHHHHHTT-----CEECCGGGTTTT--CSEEEECSSCSCSBCHHHHTTSC----TT
T ss_pred --EEEEEcCCH-----------HHHHHHHHhC-----CccCCHHHHHHh--cCEEEeCCCChhhhhHHHHHhcC----CC
Confidence 788888742 1111111100 012356777766 89999888888999999999994 68
Q ss_pred CeEEecCCCCCcccCCHHHHhcc
Q 009519 438 PAIFAMSNPTMNAECTAADAFKH 460 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~w 460 (533)
.||+-.+++.. |+..++.-.|
T Consensus 346 aiVvNaG~~~~--Ei~~~~l~~~ 366 (488)
T 3ond_A 346 AIVCNIGHFDN--EIDMLGLETH 366 (488)
T ss_dssp EEEEESSSTTT--TBTHHHHHTS
T ss_pred eEEEEcCCCCc--ccchHHHHHh
Confidence 89999999855 8888776555
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-05 Score=85.14 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=96.1
Q ss_pred cCcee----------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMF----------NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~F----------nDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|+| .|...||+-.++.|+. |.++..+.. .+++|+|.|..|.++|+.+... |+
T Consensus 208 ~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~L~G---KTVgVIG~G~IGr~vA~~lraf-----Ga----- 271 (464)
T 3n58_A 208 PFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVMMAG---KVAVVCGYGDVGKGSAQSLAGA-----GA----- 271 (464)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-----
T ss_pred CCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCcccC---CEEEEECcCHHHHHHHHHHHHC-----CC-----
Confidence 38999 6889999999998886 567888888 9999999999999999988754 43
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+++++|++. .....|... + ....+|.|+++. .|+++-+++..++++++.++.|. +.
T Consensus 272 --~Viv~d~dp-----------~~a~~A~~~----G-~~vv~LeElL~~--ADIVv~atgt~~lI~~e~l~~MK----~G 327 (464)
T 3n58_A 272 --RVKVTEVDP-----------ICALQAAMD----G-FEVVTLDDAAST--ADIVVTTTGNKDVITIDHMRKMK----DM 327 (464)
T ss_dssp --EEEEECSSH-----------HHHHHHHHT----T-CEECCHHHHGGG--CSEEEECCSSSSSBCHHHHHHSC----TT
T ss_pred --EEEEEeCCc-----------chhhHHHhc----C-ceeccHHHHHhh--CCEEEECCCCccccCHHHHhcCC----CC
Confidence 688887532 111112110 0 012469999987 99999988778999999999994 68
Q ss_pred CeEEecCCCCCcccCCHHHH
Q 009519 438 PAIFAMSNPTMNAECTAADA 457 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A 457 (533)
.||.-.++... |+..+..
T Consensus 328 AILINvGRgdv--EID~~aL 345 (464)
T 3n58_A 328 CIVGNIGHFDN--EIQVAAL 345 (464)
T ss_dssp EEEEECSSSTT--TBTCGGG
T ss_pred eEEEEcCCCCc--ccCHHHH
Confidence 88888887765 5554433
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00072 Score=69.71 Aligned_cols=238 Identities=15% Similarity=0.185 Sum_probs=123.5
Q ss_pred CChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC--CcccccchhhhhHhhhcCCCCCceecEEeeccCC-----ch
Q 009519 155 KDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN-----NQ 227 (533)
Q Consensus 155 ~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~--~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTn-----N~ 227 (533)
-.|+.++++.. .+.+|+|.++++...|+.|... .|..|+.++..++ ++.| |+|.+.+- ++
T Consensus 18 l~P~~v~~L~~----~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~---~~ad------iil~v~~p~~~~~~~ 84 (384)
T 1l7d_A 18 ISPEVVKKLVG----LGFEVIVEQGAGVGASITDDALTAAGATIASTAAQAL---SQAD------VVWKVQRPMTAEEGT 84 (384)
T ss_dssp CCHHHHHHHHH----TTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHH---SSCS------EEEEEECCCCGGGSC
T ss_pred CCHHHHHHHHh----CCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhh---cCCC------EEEEecCcccccCCH
Confidence 36777777777 4678999999999999999886 5899998877666 3433 56655321 11
Q ss_pred hc---c-cCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHH
Q 009519 228 KL---L-EDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303 (533)
Q Consensus 228 ~L---l-~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~ 303 (533)
+. + ..-.+++.-|.- ++ .+.+++++++--. ++.+|-+....+ ...+++|+ ....
T Consensus 85 ~~i~~l~~~~~~i~~~~~~-----~~---~~~~~~~~~~gi~-~~~~e~~~~~~~-------~~~l~~l~------~~a~ 142 (384)
T 1l7d_A 85 DEVALIKEGAVLMCHLGAL-----TN---RPVVEALTKRKIT-AYAMELMPRISR-------AQSMDILS------SQSN 142 (384)
T ss_dssp CGGGGSCTTCEEEEECCGG-----GC---HHHHHHHHHTTCE-EEEGGGCCCSGG-------GGGGCHHH------HHHH
T ss_pred HHHHhhccCCEEEEEeccc-----CC---HHHHHHHHHCCCE-EEEecccccccc-------ccccchhh------HHHH
Confidence 11 1 111122222210 00 1122232222211 222222211000 00122222 1112
Q ss_pred HH---HHHHHHHHhCCCC-------CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC
Q 009519 304 LA---GLLGTVRAQGLSL-------TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (533)
Q Consensus 304 LA---gli~Alr~~g~~l-------~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~ 373 (533)
+| +++.+.+..++.. .++...+|+|+|+|.+|.++++.+... |. +|+++|++.--...
T Consensus 143 ~ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~-----Ga-------~V~~~d~~~~~~~~ 210 (384)
T 1l7d_A 143 LAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRL-----GA-------VVMATDVRAATKEQ 210 (384)
T ss_dssp HHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCSTTHHH
T ss_pred HHHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHHH
Confidence 22 5666666655411 133449999999999999999887654 42 48889875321000
Q ss_pred CCCCC-------h-------hhhccccccC-CcCCccCCCCHHHHhcccCCcEEEEeccC-----CCCCCHHHHHHhhhc
Q 009519 374 RKNLD-------P-------AAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRES 433 (533)
Q Consensus 374 r~~l~-------~-------~k~~~A~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Fteevv~~Ma~~ 433 (533)
...+. . .+-.|++... ++.. .....|.+.++. .|++|.++.. +.+++++.++.|.
T Consensus 211 ~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~l~~~~~~--aDvVi~~~~~pg~~~~~li~~~~l~~mk-- 285 (384)
T 1l7d_A 211 VESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK-KQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMK-- 285 (384)
T ss_dssp HHHTTCEECCC-----------------------C-CHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSC--
T ss_pred HHHcCCeEEeecccccccccccccchhhcCHHHHh-hhHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcCC--
Confidence 00000 0 0001111100 0000 001127788876 8999998832 3578999999994
Q ss_pred CCCCCeEEecCCC
Q 009519 434 DSVKPAIFAMSNP 446 (533)
Q Consensus 434 ~~erPIIFaLSNP 446 (533)
+..+|+-+|-+
T Consensus 286 --~g~vivdva~~ 296 (384)
T 1l7d_A 286 --PGSVIIDLAVE 296 (384)
T ss_dssp --TTCEEEETTGG
T ss_pred --CCCEEEEEecC
Confidence 67899989854
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00012 Score=77.19 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=69.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC--------------hhhhccccccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD--------------PAAAPFAKDPG 389 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~--------------~~k~~~A~~~~ 389 (533)
.||+|+|+|.+|..+|+++..+ |. +++++|++.-..+....+. +-+..|++...
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRL-----GA-------VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSTTHHHHHHHTTCEECCCCC-----------------
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcc
Confidence 8999999999999999988765 32 6899998754211100010 00112333110
Q ss_pred -CcCCccCCCCHHHHhcccCCcEEEEeccC-----CCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCC
Q 009519 390 -DFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECT 453 (533)
Q Consensus 390 -~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~t 453 (533)
++. ..+..+|.|+++. .|++|++... +.+||+|+++.|. +.+||+-+|- |-...|.+
T Consensus 259 ~~~~-~~~~~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~Mk----~GsVIVDvA~d~GG~~e~t 322 (405)
T 4dio_A 259 GEYQ-VKQAALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSMK----PGSVVVDLAVERGGNIEGA 322 (405)
T ss_dssp CHHH-HHHHHHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTSC----TTCEEEETTGGGTCSBTTC
T ss_pred hhhh-hhhHhHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcCC----CCCEEEEEeCCCCCCcccc
Confidence 000 0012479999988 9999998433 4689999999994 7999999994 33334554
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=57.36 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=92.7
Q ss_pred HHHHHHHhcc-CceeccC------cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcC
Q 009519 279 FETLERYRKR-FCMFNDD------IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAG 351 (533)
Q Consensus 279 f~iL~ryr~~-~~~FnDD------iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~G 351 (533)
..+.+..+++ +.++|=. .-.+-+|+=.++..++...+..+.. .+++|+|+|..|..+|+.+... |
T Consensus 107 id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~~~~l~g---~~v~IiG~G~iG~~~a~~l~~~-----G 178 (293)
T 3d4o_A 107 TYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHG---ANVAVLGLGRVGMSVARKFAAL-----G 178 (293)
T ss_dssp HHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHCSSCSTT---CEEEEECCSHHHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhcCCCCCC---CEEEEEeeCHHHHHHHHHHHhC-----C
Confidence 4444555544 8888843 3355566666666667777877887 9999999999999999988653 4
Q ss_pred CChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHh
Q 009519 352 NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (533)
Q Consensus 352 ls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~M 430 (533)
. +++.+|+.. .+...+.. .... ....+|.|+++. .|++|-... .+.++++.++.|
T Consensus 179 ~-------~V~~~dr~~-----------~~~~~~~~~g~~~---~~~~~l~~~l~~--aDvVi~~~p-~~~i~~~~l~~m 234 (293)
T 3d4o_A 179 A-------KVKVGARES-----------DLLARIAEMGMEP---FHISKAAQELRD--VDVCINTIP-ALVVTANVLAEM 234 (293)
T ss_dssp C-------EEEEEESSH-----------HHHHHHHHTTSEE---EEGGGHHHHTTT--CSEEEECCS-SCCBCHHHHHHS
T ss_pred C-------EEEEEECCH-----------HHHHHHHHCCCee---cChhhHHHHhcC--CCEEEECCC-hHHhCHHHHHhc
Confidence 2 688888742 11111110 0000 012358888876 899997663 689999999998
Q ss_pred hhcCCCCCeEEecC-CCCCcccCCHHHHh
Q 009519 431 RESDSVKPAIFAMS-NPTMNAECTAADAF 458 (533)
Q Consensus 431 a~~~~erPIIFaLS-NPt~~aE~tpe~A~ 458 (533)
. +..+++=+| +|. ++..+.|.
T Consensus 235 k----~~~~lin~ar~~~---~~~~~~a~ 256 (293)
T 3d4o_A 235 P----SHTFVIDLASKPG---GTDFRYAE 256 (293)
T ss_dssp C----TTCEEEECSSTTC---SBCHHHHH
T ss_pred C----CCCEEEEecCCCC---CCCHHHHH
Confidence 3 577888888 454 35555553
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00088 Score=70.15 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=65.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC-------C---hhhhccccccCC-cC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-------D---PAAAPFAKDPGD-FM 392 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l-------~---~~k~~~A~~~~~-~~ 392 (533)
.||+|+|+|.+|..+|+.+..... +++++|++.-....-..+ + .....|++...+ +.
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa------------~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGA------------KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTC------------EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCC------------EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence 899999999999999999876532 689999864311100000 0 000011110000 00
Q ss_pred CccCCCCHHHHhcccCCcEEEEeccC-----CCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 393 GLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 393 ~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.....+|.++++. .|++|++-.. +.+||+++++.|. +..+|+-+|=+.
T Consensus 253 -~~~~~~l~e~l~~--aDIVI~tv~iPg~~ap~Lvt~emv~~Mk----pGsVIVDvA~d~ 305 (381)
T 3p2y_A 253 -AQQQQALEDAITK--FDIVITTALVPGRPAPRLVTAAAATGMQ----PGSVVVDLAGET 305 (381)
T ss_dssp -HHHHHHHHHHHTT--CSEEEECCCCTTSCCCCCBCHHHHHTSC----TTCEEEETTGGG
T ss_pred -hhhHHHHHHHHhc--CCEEEECCCCCCcccceeecHHHHhcCC----CCcEEEEEeCCC
Confidence 0012468899988 9999997433 4579999999994 789999998543
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.027 Score=59.79 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=126.7
Q ss_pred CCChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchHH--HHHHHHhccC-----cee----------ccCcchhHHHH
Q 009519 242 RLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAF--ETLERYRKRF-----CMF----------NDDIQGTAGVA 303 (533)
Q Consensus 242 R~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~af--~iL~ryr~~~-----~~F----------nDDiQGTaaV~ 303 (533)
..+..|-..|...|++++.+.- |..-|-=+|++..-.. -+.++|+... .|+ .|--.-||-=+
T Consensus 125 ~~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv 204 (424)
T 3k92_A 125 TMSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGV 204 (424)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHH
Confidence 3456777788999999998876 7778888999874222 2567775321 122 33445688888
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh-h
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-A 382 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k-~ 382 (533)
..++-.+++..|.+|+. .||+|-|.|..|...|++|.+. |. +-+.+.|++|-|++.. .|+... +
T Consensus 205 ~~~~~~~~~~~g~~l~g---~~vaVqG~GnVG~~aa~~l~e~-----Ga------kVVavsD~~G~iyd~~-GlD~~~l~ 269 (424)
T 3k92_A 205 TICIEEAVKKKGIKLQN---ARIIIQGFGNAGSFLAKFMHDA-----GA------KVIGISDANGGLYNPD-GLDIPYLL 269 (424)
T ss_dssp HHHHHHHHHHTTCCGGG---CEEEEECCSHHHHHHHHHHHHH-----TC------EEEEEECSSCEEECTT-CCCHHHHH
T ss_pred HHHHHHHHHHcCCCccc---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC-CCCHHHHH
Confidence 88899999999998888 9999999999999999999775 32 3467999999999754 344322 1
Q ss_pred ccccccCCcCCc-cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 383 PFAKDPGDFMGL-REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 383 ~~A~~~~~~~~~-~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
.+......+.+. ....+-.++ -.++.||||=+.. .+.+|++-++.+ .-.+|.--+| |+.
T Consensus 270 ~~~~~~g~i~~~~a~~~~~~~i-~~~~~DIliPcA~-~n~I~~~~a~~l-----~ak~V~EgAN~p~t 330 (424)
T 3k92_A 270 DKRDSFGMVTNLFTDVITNEEL-LEKDCDILVPAAI-SNQITAKNAHNI-----QASIVVERANGPTT 330 (424)
T ss_dssp HHCCSSSCCGGGCSCCBCHHHH-HHSCCSEEEECSC-SSCBCTTTGGGC-----CCSEEECCSSSCBC
T ss_pred HHHHHhCCCCCCCcEEecCccc-eeccccEEeecCc-ccccChhhHhhc-----CceEEEcCCCCCCC
Confidence 121111100000 011223343 3568999998876 599999988877 4578888888 653
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.39 E-value=0.14 Score=54.76 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=125.8
Q ss_pred cCCChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHh---ccC-cee----------ccCcchhHHHH
Q 009519 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYR---KRF-CMF----------NDDIQGTAGVA 303 (533)
Q Consensus 241 ~R~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr---~~~-~~F----------nDDiQGTaaV~ 303 (533)
+..+..|...|...|++.+.+.. |...|--.|++..-. --+...|+ +.. .|| .+.-.-||-=+
T Consensus 139 k~~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv 218 (450)
T 4fcc_A 139 KGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGL 218 (450)
T ss_dssp TTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeH
Confidence 34577888899999999987766 888999999976432 12444444 332 333 23334477777
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (533)
.-++-.+++..|.+|+. .||+|-|.|..|...|+.|.+. |. +=|-+-|++|-|++.. .++..+..
T Consensus 219 ~~~~~~~~~~~~~~l~G---k~vaVQG~GnVG~~aa~~L~e~-----Ga------kvVavsD~~G~i~d~~-Gid~e~l~ 283 (450)
T 4fcc_A 219 VYFTEAMLKRHGMGFEG---MRVSVSGSGNVAQYAIEKAMEF-----GA------RVITASDSSGTVVDES-GFTKEKLA 283 (450)
T ss_dssp HHHHHHHHHHTTCCSTT---CEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEEETTEEEECTT-CCCHHHHH
T ss_pred HHHHHHHHHHcCCCcCC---CEEEEeCCChHHHHHHHHHHhc-----CC------eEEEEecCCceEEeCC-CCCHHHHH
Confidence 88888899999999888 9999999999999999999875 32 4567789999998754 35443321
Q ss_pred cccc-cCCcCCccCCCCHHH-------------HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 384 FAKD-PGDFMGLREGASLLE-------------VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 384 ~A~~-~~~~~~~~~~~~L~e-------------~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
.... ... ....+.+ -+-.++.|||+=+.. .+.+|++-++.+.+ +.-.+|.--+| |+.
T Consensus 284 ~l~e~k~~-----~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl-~~~I~~~~a~~L~a--~g~k~IaEgAN~p~t 355 (450)
T 4fcc_A 284 RLIEIKSS-----RDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCAT-QNELDVDAAHQLIA--NGVKAVAEGANMPTT 355 (450)
T ss_dssp HHHHHHTS-----TTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSC-TTCBCHHHHHHHHH--TTCCEEECCSSSCBC
T ss_pred HHHHHhcc-----cCCccccccccCCcEEecCcccccCCccEEeeccc-cccccHHHHHHHHh--cCceEEecCCCCCCC
Confidence 1100 000 0011111 123468999998876 69999999999954 33468887888 653
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0066 Score=61.85 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+-.-+|-.|++-.++..+.+++. .++||+|+| ..|.-+|.++... | ..+.+++++
T Consensus 143 ~~~PcTp~gi~~ll~~~~i~l~g---k~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~--------- 198 (301)
T 1a4i_A 143 CFIPCTPKGCLELIKETGVPIAG---RHAVVVGRSKIVGAPMHDLLLWN-----N-------ATVTTCHSK--------- 198 (301)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCTT---CEEEEECCCTTTHHHHHHHHHHT-----T-------CEEEEECTT---------
T ss_pred CccCchHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHHHhC-----C-------CeEEEEECC---------
Confidence 33456778899999999999888 999999999 5899999988763 3 268888642
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
..+|.+.++. +|++|+..+.++.+++++|+ +.-+|+=++-|
T Consensus 199 --------------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDVgi~ 239 (301)
T 1a4i_A 199 --------------------TAHLDEEVNK--GDILVVATGQPEMVKGEWIK-------PGAIVIDCGIN 239 (301)
T ss_dssp --------------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC-------TTCEEEECCCB
T ss_pred --------------------cccHHHHhcc--CCEEEECCCCcccCCHHHcC-------CCcEEEEccCC
Confidence 1348999988 99999999999999998875 45677777754
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.12 Score=55.36 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=127.5
Q ss_pred CCChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhcc---Cc-ee----------ccCcchhHHHHH
Q 009519 242 RLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR---FC-MF----------NDDIQGTAGVAL 304 (533)
Q Consensus 242 R~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---~~-~F----------nDDiQGTaaV~L 304 (533)
-.+..|...|...||+.+.+.. |..-|-=+|++..- ---+.+.|+.. .+ |+ ..--.-||-=+.
T Consensus 144 ~~s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~ 223 (456)
T 3r3j_A 144 GKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVV 223 (456)
T ss_dssp TCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHH
Confidence 3466778888888999886655 88888899998743 22355666532 21 11 122234676677
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc-
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP- 383 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~- 383 (533)
-++-.+++..|.+|+. .||+|-|.|..|...|+.|.++.. +-+.+.|++|-|++.. .|+..+..
T Consensus 224 ~~~~~~~~~~g~~l~g---~~VaVQG~GnVG~~aa~~L~e~Ga-----------kvVavsD~~G~iyd~~-Gld~~~l~~ 288 (456)
T 3r3j_A 224 YFAENVLKDLNDNLEN---KKCLVSGSGNVAQYLVEKLIEKGA-----------IVLTMSDSNGYILEPN-GFTKEQLNY 288 (456)
T ss_dssp HHHHHHHHTTTCCSTT---CCEEEECCSHHHHHHHHHHHHHTC-----------CBCCEECSSCEEECTT-CCCHHHHHH
T ss_pred HHHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHCCC-----------EEEEEECCCCcEECCC-CCCHHHHHH
Confidence 7788888888988888 999999999999999999977533 3345899999998754 35433221
Q ss_pred --------------cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 384 --------------FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 384 --------------~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
|+...+... .-....+ -.++.||||=+.. ++.+|++-++.+.+ +.-+||.--+| |+.
T Consensus 289 ~~~~k~~~~~~v~~~~~~~~~a~-~v~~~~i----~~~~~DI~iPcA~-~~~I~~~na~~l~~--~~ak~V~EgAN~p~T 360 (456)
T 3r3j_A 289 IMDIKNNQRLRLKEYLKYSKTAK-YFENQKP----WNIPCDIAFPCAT-QNEINENDADLFIQ--NKCKMIVEGANMPTH 360 (456)
T ss_dssp HHHHHHTSCCCGGGGGGTCSSCE-EECSCCG----GGSCCSEEEECSC-TTCBCHHHHHHHHH--HTCCEEECCSSSCBC
T ss_pred HHHHHHhcCcchhhhhhcCCCce-EeCCccc----cccCccEEEeCCC-ccchhhHHHHHHHh--cCCeEEEecCCCCCC
Confidence 111000000 0011222 3467999998876 79999999999842 35679999999 754
Q ss_pred cccCCHHHHhc
Q 009519 449 NAECTAADAFK 459 (533)
Q Consensus 449 ~aE~tpe~A~~ 459 (533)
.| +++.++
T Consensus 361 -~e--A~~iL~ 368 (456)
T 3r3j_A 361 -IK--ALHKLK 368 (456)
T ss_dssp -TT--HHHHHH
T ss_pred -HH--HHHHHH
Confidence 23 556655
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.058 Score=57.14 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=126.3
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhcc---C--cee----------ccCcchhHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR---F--CMF----------NDDIQGTAGVAL 304 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---~--~~F----------nDDiQGTaaV~L 304 (533)
.+..|-..+...|++++...- |..-|-=+|++..- --.+.++|+.. . .++ .+.-.-||-=+.
T Consensus 123 ~s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~ 202 (419)
T 3aoe_E 123 LSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGAL 202 (419)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHH
Confidence 455677788999999998877 78888889998753 23456677431 0 122 233345777777
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhhh-
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA- 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k~- 382 (533)
-++-.+++..|.+|+. .||+|-|.|..|...|++|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 203 ~~~~~~~~~~g~~l~g---k~vaVqG~GnVG~~~a~~L~~~-----Ga-------kVVavsD~~G~i~dp~-Gld~~~l~ 266 (419)
T 3aoe_E 203 LVLEALAKRRGLDLRG---ARVVVQGLGQVGAAVALHAERL-----GM-------RVVAVATSMGGMYAPE-GLDVAEVL 266 (419)
T ss_dssp HHHHHHHHHHTCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEEETTEEEECTT-CCCHHHHH
T ss_pred HHHHHHHHhcCCCccC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCeEECCC-CCCHHHHH
Confidence 7788888889998888 9999999999999999988764 42 566 999999998764 3433221
Q ss_pred ccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhc
Q 009519 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 459 (533)
Q Consensus 383 ~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~ 459 (533)
.+.+....+.+. ..+-.+ +-.++.|||+=++. .+.+|++-.+.+ .-.||.--+| |+. .| +++.++
T Consensus 267 ~~~~~~g~v~~~--~~~~~e-~~~~~~DVliP~A~-~n~i~~~~A~~l-----~ak~V~EgAN~p~t-~~--A~~~L~ 332 (419)
T 3aoe_E 267 SAYEATGSLPRL--DLAPEE-VFGLEAEVLVLAAR-EGALDGDRARQV-----QAQAVVEVANFGLN-PE--AEAYLL 332 (419)
T ss_dssp HHHHHHSSCSCC--CBCTTT-GGGSSCSEEEECSC-TTCBCHHHHTTC-----CCSEEEECSTTCBC-HH--HHHHHH
T ss_pred HHHHhhCCccee--eccchh-hhccCceEEEeccc-ccccccchHhhC-----CceEEEECCCCcCC-HH--HHHHHH
Confidence 111111111000 000012 23478999998875 799999999887 3469999998 654 23 445554
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.011 Score=59.83 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++..++..+.+++. .++|++|+|. .|..+|.+|... |. .+.+++|+
T Consensus 142 PcTp~gv~~lL~~~~i~l~G---k~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~hs~------------ 194 (285)
T 3l07_A 142 SCTPKGIMTMLREYGIKTEG---AYAVVVGASNVVGKPVSQLLLNA-----KA-------TVTTCHRF------------ 194 (285)
T ss_dssp CHHHHHHHHHHHHTTCCCTT---CEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT------------
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC------------
Confidence 45777888999999999998 9999999876 899999998763 32 57777642
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+ .+|.+.++. +|++|...+.++.+++|+|| +.-+|+=++
T Consensus 195 --------t---------~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDvg 233 (285)
T 3l07_A 195 --------T---------TDLKSHTTK--ADILIVAVGKPNFITADMVK-------EGAVVIDVG 233 (285)
T ss_dssp --------C---------SSHHHHHTT--CSEEEECCCCTTCBCGGGSC-------TTCEEEECC
T ss_pred --------c---------hhHHHhccc--CCEEEECCCCCCCCCHHHcC-------CCcEEEEec
Confidence 1 248899988 99999999999999998874 455776664
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.064 Score=57.20 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=126.1
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCc--hHHHHHHHHhcc---C--cee----------ccCcchhHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKR---F--CMF----------NDDIQGTAGVAL 304 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~---~--~~F----------nDDiQGTaaV~L 304 (533)
.+..|-..|...|++++...- |..-|-=+|++.. .--.+.++|+.. . .|+ ++.-.-||-=+.
T Consensus 140 ~s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~ 219 (440)
T 3aog_A 140 LSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVF 219 (440)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHH
Confidence 455677788999999998877 7888888999874 223356677431 1 222 233345776667
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhhh-
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA- 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k~- 382 (533)
-++-.+++..|.+++. .||+|.|.|..|...|++|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 220 ~~~~~~~~~~g~~l~g---~~vaVqGfGnVG~~~a~~L~e~-----Ga-------kvVavsD~~G~i~dp~-Gld~~~l~ 283 (440)
T 3aog_A 220 ITAAAAAEKIGLQVEG---ARVAIQGFGNVGNAAARAFHDH-----GA-------RVVAVQDHTGTVYNEA-GIDPYDLL 283 (440)
T ss_dssp HHHHHHHHHHTCCSTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEECSSCEEECTT-CCCHHHHH
T ss_pred HHHHHHHHhcCCCccC---CEEEEeccCHHHHHHHHHHHHC-----CC-------EEEEEEcCCcEEECCC-CCCHHHHH
Confidence 7788888889998888 9999999999999999988764 42 455 999999998865 2332211
Q ss_pred ccccccCCcCCc--cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhc
Q 009519 383 PFAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 459 (533)
Q Consensus 383 ~~A~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~ 459 (533)
.+......+.+. ....+-.+. -.++.||||=+.. ++.+|++-++.+ .-.+|.--+| |+. .| +++.++
T Consensus 284 ~~~~~~g~i~~y~~a~~i~~~ei-~~~~~DIlvPcA~-~n~i~~~na~~l-----~ak~VvEgAN~p~t-~e--A~~iL~ 353 (440)
T 3aog_A 284 RHVQEFGGVRGYPKAEPLPAADF-WGLPVEFLVPAAL-EKQITEQNAWRI-----RARIVAEGANGPTT-PA--ADDILL 353 (440)
T ss_dssp HHHHHTSSSTTCTTSEECCHHHH-TTCCCSEEEECSS-SSCBCTTTGGGC-----CCSEEECCSSSCBC-HH--HHHHHH
T ss_pred HHHHhcCCcccCCCceEcCchhh-hcCCCcEEEecCC-cCccchhhHHHc-----CCcEEEecCccccC-HH--HHHHHH
Confidence 111111111100 011233443 4578999998776 789999888877 3568888888 654 22 445544
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.068 Score=56.60 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=110.6
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhcc---C---cee----------ccCcchhHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR---F---CMF----------NDDIQGTAGVA 303 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---~---~~F----------nDDiQGTaaV~ 303 (533)
.+..|-..+...|++++...- |..-|-=+|++..- --.+.++|+.. . .++ .+.-.-||-=+
T Consensus 116 ~s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv 195 (421)
T 2yfq_A 116 LSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGV 195 (421)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHH
Confidence 455677788999999998877 78888899999752 22466777532 1 122 22233466666
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-----CccccCCCCCC
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-----GLITKERKNLD 378 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-----GLi~~~r~~l~ 378 (533)
.-++-.+++..|.+|+. .||+|.|.|..|...|++|.+. |. +=+-+.|++ |-|++.. .|+
T Consensus 196 ~~~~~~~~~~~g~~l~g---~~vaVqG~GnVG~~~a~~L~~~-----Ga------kvVavsD~~~~~~~G~i~d~~-Gld 260 (421)
T 2yfq_A 196 AVVVRESAKRFGIKMED---AKIAVQGFGNVGTFTVKNIERQ-----GG------KVCAIAEWDRNEGNYALYNEN-GID 260 (421)
T ss_dssp HHHHHHHHHHTTCCGGG---SCEEEECCSHHHHHHHHHHHHT-----TC------CEEECCBCCSSSCSBCCBCSS-CCC
T ss_pred HHHHHHHHHhcCCCccC---CEEEEECcCHHHHHHHHHHHHC-----CC------EEEEEEecCCCccceEEECCC-CCC
Confidence 66778888888988888 9999999999999999988764 42 234489999 9998864 343
Q ss_pred hhhh-ccccccCCcCCcc--CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 009519 379 PAAA-PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (533)
Q Consensus 379 ~~k~-~~A~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt 447 (533)
.... .+.+....+.+.+ ...+-.+ +-.++.||||=+.. ++.+|++-.+.+ .-.+|.--+| |+
T Consensus 261 ~~~l~~~~~~~g~i~~~~~a~~i~~~~-~~~~~~DIliP~A~-~n~i~~~~A~~l-----~ak~VvEgAN~P~ 326 (421)
T 2yfq_A 261 FKELLAYKEANKTLIGFPGAERITDEE-FWTKEYDIIVPAAL-ENVITGERAKTI-----NAKLVCEAANGPT 326 (421)
T ss_dssp HHHHHHHHHHHCC----------------------CEEECSC-SSCSCHHHHTTC-----CCSEEECCSSSCS
T ss_pred HHHHHHHHHhcCCcccCCCceEeCccc-hhcCCccEEEEcCC-cCcCCcccHHHc-----CCeEEEeCCcccc
Confidence 2211 1111110000000 0011112 23456788886654 677787777766 3456666666 54
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.018 Score=58.23 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++..++..+.+++. .++||+|+|- .|..+|.+|... |. .+.+++++
T Consensus 140 ~PcTp~gv~~lL~~~~i~l~G---k~vvVvGrs~iVG~p~A~lL~~~-----gA-------tVtv~h~~----------- 193 (285)
T 3p2o_A 140 LPCTPLGVMKLLKAYEIDLEG---KDAVIIGASNIVGRPMATMLLNA-----GA-------TVSVCHIK----------- 193 (285)
T ss_dssp CCHHHHHHHHHHHHTTCCCTT---CEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-----------
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-----------
Confidence 456778899999999999999 9999999876 899999998764 32 57888642
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CCC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NPT 447 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NPt 447 (533)
..+|.+.++. +|++|...+.++.++.|+|| +.-+|+=++ ||.
T Consensus 194 ------------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDVgi~~~ 236 (285)
T 3p2o_A 194 ------------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK-------EGVIVVDVGINRL 236 (285)
T ss_dssp ------------------CSCHHHHHTT--CSEEEECSSCTTCBCGGGSC-------TTEEEEECCCEEC
T ss_pred ------------------chhHHHHhhc--CCEEEECCCCCCcCCHHHcC-------CCeEEEEeccCcc
Confidence 0248899988 99999999999999998874 455666554 454
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.02 Score=58.00 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++..++..+.+++. .++|++|+|- .|..+|.+|... |. .+.+++++
T Consensus 142 PcTp~gv~~lL~~~~i~l~G---k~vvVvGrs~iVG~plA~lL~~~-----gA-------tVtv~hs~------------ 194 (286)
T 4a5o_A 142 PCTPKGIMTLLASTGADLYG---MDAVVVGASNIVGRPMALELLLG-----GC-------TVTVTHRF------------ 194 (286)
T ss_dssp CHHHHHHHHHHHHTTCCCTT---CEEEEECTTSTTHHHHHHHHHHT-----TC-------EEEEECTT------------
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC------------
Confidence 45778889999999999988 9999999875 899999998763 32 57777541
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEec-CCCCCc----ccCCH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTMN----AECTA 454 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaL-SNPt~~----aE~tp 454 (533)
..+|.+.++. +|++|...+.++.++.|+|| +.-+|+=+ +||.+. --+.+
T Consensus 195 -----------------T~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDvgi~~~~~gkl~GDVdf 248 (286)
T 4a5o_A 195 -----------------TRDLADHVSR--ADLVVVAAGKPGLVKGEWIK-------EGAIVIDVGINRQADGRLVGDVEY 248 (286)
T ss_dssp -----------------CSCHHHHHHT--CSEEEECCCCTTCBCGGGSC-------TTCEEEECCSCSSCCCCSSCSBCH
T ss_pred -----------------CcCHHHHhcc--CCEEEECCCCCCCCCHHHcC-------CCeEEEEecccccccCCcccCccH
Confidence 1248899988 99999999999999998885 44577665 466531 13455
Q ss_pred HHHhc
Q 009519 455 ADAFK 459 (533)
Q Consensus 455 e~A~~ 459 (533)
+++.+
T Consensus 249 ~~v~~ 253 (286)
T 4a5o_A 249 EVAAQ 253 (286)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.017 Score=58.13 Aligned_cols=137 Identities=9% Similarity=0.127 Sum_probs=92.2
Q ss_pred HHHHHHHHHhC--CCc---eeeeecCCCchHHHHHHHHh--ccCceeccC--------cchhHHHHHHHHHHHHHHhCCC
Q 009519 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYR--KRFCMFNDD--------IQGTAGVALAGLLGTVRAQGLS 317 (533)
Q Consensus 253 defv~av~~~~--P~~---~I~~EDf~~~~af~iL~ryr--~~~~~FnDD--------iQGTaaV~LAgli~Alr~~g~~ 317 (533)
+|+++.+++.. |++ ++|+==.+.-+..++++.-. +.+=.||.- ..+-.-+|-.|++..++..+
T Consensus 70 ~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~~-- 147 (276)
T 3ngx_A 70 KDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALNREFLVPATPRAVIDIMDYYG-- 147 (276)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhcCCCCCCCCcHHHHHHHHHHhC--
Confidence 56777776665 553 55553333334444444431 223233321 12234467789999999998
Q ss_pred CCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
++. .++|++|+| ..|..+|.+|... |. .+.+++++
T Consensus 148 l~G---k~vvVvG~s~iVG~plA~lL~~~-----gA-------tVtv~~~~----------------------------- 183 (276)
T 3ngx_A 148 YHE---NTVTIVNRSPVVGRPLSMMLLNR-----NY-------TVSVCHSK----------------------------- 183 (276)
T ss_dssp CCS---CEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-----------------------------
T ss_pred cCC---CEEEEEcCChHHHHHHHHHHHHC-----CC-------eEEEEeCC-----------------------------
Confidence 777 999999997 5899999998764 32 57888652
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.++. +|++|...+.++.++++++| +.-+|+=++
T Consensus 184 t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDvg 222 (276)
T 3ngx_A 184 TKDIGSMTRS--SKIVVVAVGRPGFLNREMVT-------PGSVVIDVG 222 (276)
T ss_dssp CSCHHHHHHH--SSEEEECSSCTTCBCGGGCC-------TTCEEEECC
T ss_pred cccHHHhhcc--CCEEEECCCCCccccHhhcc-------CCcEEEEec
Confidence 1348999998 99999999999999998874 445777664
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=58.77 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+-.-+|-.|++-.++..+.+++. .++||+|+|. .|.-+|.++... | ..+.+++++
T Consensus 137 ~~~PcTp~gi~~ll~~~~i~l~g---k~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~--------- 192 (288)
T 1b0a_A 137 RLRPCTPRGIVTLLERYNIDTFG---LNAVVIGASNIVGRPMSMELLLA-----G-------CTTTVTHRF--------- 192 (288)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTT---CEEEEECCCTTTHHHHHHHHHTT-----T-------CEEEEECSS---------
T ss_pred CCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCChHHHHHHHHHHHHC-----C-------CeEEEEeCC---------
Confidence 33456778899999999999988 9999999995 799999888753 3 368888531
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
..+|.+.++. +|++|+..+.++.+++++|| +.-+|+=++-|
T Consensus 193 --------------------t~~L~~~~~~--ADIVI~Avg~p~lI~~~~vk-------~GavVIDVgi~ 233 (288)
T 1b0a_A 193 --------------------TKNLRHHVEN--ADLLIVAVGKPGFIPGDWIK-------EGAIVIDVGIN 233 (288)
T ss_dssp --------------------CSCHHHHHHH--CSEEEECSCCTTCBCTTTSC-------TTCEEEECCCE
T ss_pred --------------------chhHHHHhcc--CCEEEECCCCcCcCCHHHcC-------CCcEEEEccCC
Confidence 1348999988 99999999999999998874 45577777754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.023 Score=57.84 Aligned_cols=95 Identities=14% Similarity=0.280 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
.|-.-+|-.|++..++..+.+++. .++||+|+|- .|..+|.+|... |. .+.+++++ +
T Consensus 142 ~~~~PcTp~gv~~lL~~~~i~l~G---k~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~~~~-------T 199 (300)
T 4a26_A 142 PPFTPCTAKGVIVLLKRCGIEMAG---KRAVVLGRSNIVGAPVAALLMKE-----NA-------TVTIVHSG-------T 199 (300)
T ss_dssp CSCCCHHHHHHHHHHHHHTCCCTT---CEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-------S
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-------C
Confidence 343456778899999999999999 9999999876 899999998764 32 58888761 0
Q ss_pred CCChhhhccccccCCcCCccCCCCHH--HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLL--EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~--e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+|. +.++. +|++|...+.++.++.++|+ +.-+|+=++
T Consensus 200 ----------------------~~l~l~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDvg 239 (300)
T 4a26_A 200 ----------------------STEDMIDYLRT--ADIVIAAMGQPGYVKGEWIK-------EGAAVVDVG 239 (300)
T ss_dssp ----------------------CHHHHHHHHHT--CSEEEECSCCTTCBCGGGSC-------TTCEEEECC
T ss_pred ----------------------CCchhhhhhcc--CCEEEECCCCCCCCcHHhcC-------CCcEEEEEe
Confidence 1255 88988 99999999999999998874 455776554
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.096 Score=56.36 Aligned_cols=124 Identities=20% Similarity=0.283 Sum_probs=87.5
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC
Q 009519 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (533)
Q Consensus 294 DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~ 373 (533)
+.+.|.......| + .+.++..+.. .+++|+|.|..|.++|+.+... |+ +++.+|++..
T Consensus 234 r~~~~~~~~l~~g-w--~r~~~~~l~G---ktVgIIG~G~IG~~vA~~l~~~-----G~-------~Viv~d~~~~---- 291 (479)
T 1v8b_A 234 DNVYGCRHSLPDG-L--MRATDFLISG---KIVVICGYGDVGKGCASSMKGL-----GA-------RVYITEIDPI---- 291 (479)
T ss_dssp HHHHHHHHHHHHH-H--HHHHCCCCTT---SEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSCHH----
T ss_pred hchHhHHHHHhhh-h--hhccccccCC---CEEEEEeeCHHHHHHHHHHHhC-----cC-------EEEEEeCChh----
Confidence 3445555555666 3 2567877888 9999999999999999998765 33 7888887421
Q ss_pred CCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCC
Q 009519 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECT 453 (533)
Q Consensus 374 r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~t 453 (533)
... ..+... ....+|.|+++. .|++|......+.++++.++.|. +..||.=.+.-.. |+.
T Consensus 292 -----~~~-~a~~~g------~~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK----~gailiNvgrg~~--EId 351 (479)
T 1v8b_A 292 -----CAI-QAVMEG------FNVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK----NNAVVGNIGHFDD--EIQ 351 (479)
T ss_dssp -----HHH-HHHTTT------CEECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC----TTCEEEECSSTTT--SBC
T ss_pred -----hHH-HHHHcC------CEecCHHHHHhc--CCEEEECCChhhhcCHHHHhhcC----CCcEEEEeCCCCc--ccc
Confidence 000 111110 012479999987 99999997778999999999993 5778888887555 677
Q ss_pred HHHHhc
Q 009519 454 AADAFK 459 (533)
Q Consensus 454 pe~A~~ 459 (533)
-++..+
T Consensus 352 ~~aL~~ 357 (479)
T 1v8b_A 352 VNELFN 357 (479)
T ss_dssp HHHHHT
T ss_pred chhhhc
Confidence 776665
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.22 Score=53.62 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=120.7
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhcc--C--cee----------ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR--F--CMF----------NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~--~--~~F----------nDDiQGTaaV~LA 305 (533)
.+..|...|...||+.+.+.. |..-|-=+|++..- ---+.++|+.. . .|+ .++-.-||-=+.-
T Consensus 158 ~S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~ 237 (470)
T 2bma_A 158 KSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVY 237 (470)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHH
Confidence 356677778888888888654 77788889998742 22355666531 1 111 1222346666666
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhh---
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAA--- 381 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k--- 381 (533)
++-.+++..|.+|+. .||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .++..+
T Consensus 238 ~~~~~l~~~G~~l~g---~~vaVqG~GnVG~~~a~~L~~~-----Ga-------kvVavsD~~G~i~dp~-Gid~edl~~ 301 (470)
T 2bma_A 238 FVLEVLKSLNIPVEK---QTAVVSGSGNVALYCVQKLLHL-----NV-------KVLTLSDSNGYVYEPN-GFTHENLEF 301 (470)
T ss_dssp HHHHHHHTTTCCGGG---CEEEEECSSHHHHHHHHHHHHT-----TC-------EECEEEETTEEEECSS-CCCHHHHHH
T ss_pred HHHHHHHhccCCcCC---CEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEEeCCceEECCC-CCCHHHHHH
Confidence 777888888988888 9999999999999999999764 32 455 899999988754 343321
Q ss_pred ------------hccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 382 ------------APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 382 ------------~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
..|+...+ +. ...+-.+.. .++.||||=+.. ++.+|++-++.+.+ +.-.||.--+| |+.
T Consensus 302 l~~~k~~~~g~v~~~~~~~~---~a-~~v~~~~~~-~~~~DI~iPcA~-~~~I~~~na~~l~~--~~ak~V~EgAN~p~T 373 (470)
T 2bma_A 302 LIDLKEEKKGRIKEYLNHSS---TA-KYFPNEKPW-GVPCTLAFPCAT-QNDVDLDQAKLLQK--NGCILVGEGANMPST 373 (470)
T ss_dssp HHHHHTTTTCCGGGGGGTCS---SC-EECSSCCTT-SSCCSEEEECSS-TTCBCSHHHHHHHH--TTCCEEECCSSSCBC
T ss_pred HHHHHHhcCCcHHHHHhhcC---Cc-EEecCcCee-ecCccEEEeccc-cCcCCHHHHHHHHh--cCcEEEEeCCCCCCC
Confidence 11211000 00 000001222 568999998875 79999999999943 56679999999 653
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.017 Score=59.14 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=74.9
Q ss_pred HHHHHHHHHHH---------hCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc
Q 009519 303 ALAGLLGTVRA---------QGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (533)
Q Consensus 303 ~LAgli~Alr~---------~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~ 372 (533)
|-.|.+-.++. .|.+++. .++||+|+|. .|.-+|.++... | .+++++|++..-..
T Consensus 151 Tp~a~v~ll~~~~~~~~~~~~g~~l~g---k~vvVIG~G~iVG~~~A~~L~~~-----g-------AtVtv~nR~~~~l~ 215 (320)
T 1edz_A 151 TPLAIVKILEFLKIYNNLLPEGNRLYG---KKCIVINRSEIVGRPLAALLAND-----G-------ATVYSVDVNNIQKF 215 (320)
T ss_dssp HHHHHHHHHHHTTCSCTTSCTTCTTTT---CEEEEECCCTTTHHHHHHHHHTT-----S-------CEEEEECSSEEEEE
T ss_pred cHHHHHHHHHhhcccccccccCCCCCC---CEEEEECCCcchHHHHHHHHHHC-----C-------CEEEEEeCchHHHH
Confidence 33444566665 5767777 9999999995 599988888653 3 26899998755444
Q ss_pred CCC-CCChhhhccccccCCcCCccCC--CCHHHHhcccCCcEEEEeccCCCC-CCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 373 ERK-NLDPAAAPFAKDPGDFMGLREG--ASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 373 ~r~-~l~~~k~~~A~~~~~~~~~~~~--~~L~e~V~~vkptvLIG~S~~~g~-Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.|. .+... ++..... ... .+|.++++. +|++|+..+.++. ++.++|+ +.-+|+-++-|-
T Consensus 216 ~ra~~la~~----~~~~t~~---~~t~~~~L~e~l~~--ADIVIsAtg~p~~vI~~e~vk-------~GavVIDVgi~r 278 (320)
T 1edz_A 216 TRGESLKLN----KHHVEDL---GEYSEDLLKKCSLD--SDVVITGVPSENYKFPTEYIK-------EGAVCINFACTK 278 (320)
T ss_dssp ESCCCSSCC----CCEEEEE---EECCHHHHHHHHHH--CSEEEECCCCTTCCBCTTTSC-------TTEEEEECSSSC
T ss_pred hHHHHHhhh----ccccccc---ccccHhHHHHHhcc--CCEEEECCCCCcceeCHHHcC-------CCeEEEEcCCCc
Confidence 442 23210 1110000 001 469999999 9999999998887 9998864 234666676654
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.58 Score=48.46 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=106.4
Q ss_pred CChhhhhHhHHHHHHHHHHhCCCceeeeecCCCch--HHHHHHHHhcc--Cc-ee---ccCcchhHHHHHHHHHHHHHHh
Q 009519 243 LEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKW--AFETLERYRKR--FC-MF---NDDIQGTAGVALAGLLGTVRAQ 314 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~--af~iL~ryr~~--~~-~F---nDDiQGTaaV~LAgli~Alr~~ 314 (533)
++..+-++++..|.+++..+... -|-=+|++..- --.+.++|+-- -| .+ .|--.-||-=+.-++-.+++..
T Consensus 90 ~s~~~~e~~~r~~~~~~~~l~g~-~ipa~D~gt~~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~ 168 (355)
T 1c1d_A 90 IDPSTWARILRIHAENIDKLSGN-YWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHR 168 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTS-EEEEECTTCCHHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cChhhHHHHHHHHHHHHHHhcCC-cccCCCCCCCHHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 44456667888888888887522 56778987643 22355555521 11 11 1111236666666777888888
Q ss_pred CC-CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCC
Q 009519 315 GL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG 393 (533)
Q Consensus 315 g~-~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~ 393 (533)
|. +|+. .+++|.|.|..|..+|+.+... |. +|++.|++ .....+++...
T Consensus 169 G~~~L~G---ktV~I~G~GnVG~~~A~~l~~~-----Ga-------kVvvsD~~-----------~~~~~~a~~~g---- 218 (355)
T 1c1d_A 169 GLGSLDG---LTVLVQGLGAVGGSLASLAAEA-----GA-------QLLVADTD-----------TERVAHAVALG---- 218 (355)
T ss_dssp TCCCSTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC-----------HHHHHHHHHTT----
T ss_pred CCCCCCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEEeCC-----------ccHHHHHHhcC----
Confidence 87 7777 9999999999999999987654 43 67788864 11122332110
Q ss_pred ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
....++.|+.+ ++.|+|+=.. ..+.++++-++.| .-.||.--+| |+.
T Consensus 219 -a~~v~~~ell~-~~~DIliP~A-~~~~I~~~~~~~l-----k~~iVie~AN~p~t 266 (355)
T 1c1d_A 219 -HTAVALEDVLS-TPCDVFAPCA-MGGVITTEVARTL-----DCSVVAGAANNVIA 266 (355)
T ss_dssp -CEECCGGGGGG-CCCSEEEECS-CSCCBCHHHHHHC-----CCSEECCSCTTCBC
T ss_pred -CEEeChHHhhc-CccceecHhH-HHhhcCHHHHhhC-----CCCEEEECCCCCCC
Confidence 01123444443 4689999554 5789999999999 2468888888 653
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.11 Score=51.29 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=72.0
Q ss_pred HHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC
Q 009519 311 VRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD 390 (533)
Q Consensus 311 lr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~ 390 (533)
++..+..+.. .+++|+|+|..|..+|+.+... |. +++.+|+.- .+ +.. ++.....
T Consensus 148 ~~~~~~~l~g---~~v~IiG~G~iG~~~a~~l~~~-----G~-------~V~~~d~~~----~~--~~~----~~~~g~~ 202 (300)
T 2rir_A 148 IQHTDYTIHG---SQVAVLGLGRTGMTIARTFAAL-----GA-------NVKVGARSS----AH--LAR----ITEMGLV 202 (300)
T ss_dssp HHTCSSCSTT---SEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESSH----HH--HHH----HHHTTCE
T ss_pred HHhcCCCCCC---CEEEEEcccHHHHHHHHHHHHC-----CC-------EEEEEECCH----HH--HHH----HHHCCCe
Confidence 3445677777 9999999999999999988653 43 688888741 11 110 1110000
Q ss_pred cCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHH
Q 009519 391 FMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADA 457 (533)
Q Consensus 391 ~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A 457 (533)
. ....+|.|+++. .|++|-... .+.++++.++.|. +..+|+=+|.-.. +|..+.+
T Consensus 203 ~---~~~~~l~~~l~~--aDvVi~~~p-~~~i~~~~~~~mk----~g~~lin~a~g~~--~~~~~~a 257 (300)
T 2rir_A 203 P---FHTDELKEHVKD--IDICINTIP-SMILNQTVLSSMT----PKTLILDLASRPG--GTDFKYA 257 (300)
T ss_dssp E---EEGGGHHHHSTT--CSEEEECCS-SCCBCHHHHTTSC----TTCEEEECSSTTC--SBCHHHH
T ss_pred E---EchhhHHHHhhC--CCEEEECCC-hhhhCHHHHHhCC----CCCEEEEEeCCCC--CcCHHHH
Confidence 0 012468888876 899997665 5899999988883 5778888886322 3545444
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.044 Score=55.31 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=93.6
Q ss_pred HHHHHHHHHhC--CCc---eeeeecCCCchHHHHHHHHhc--cCceecc--------CcchhHHHHHHHHHHHHHHhCCC
Q 009519 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRK--RFCMFND--------DIQGTAGVALAGLLGTVRAQGLS 317 (533)
Q Consensus 253 defv~av~~~~--P~~---~I~~EDf~~~~af~iL~ryr~--~~~~FnD--------DiQGTaaV~LAgli~Alr~~g~~ 317 (533)
+|+.+.+.++- |++ ++|+==.+.-+..++++.-.- .+=.||. ...+-.-+|-.|++-.++..+.+
T Consensus 76 ~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~~i~ 155 (281)
T 2c2x_A 76 ATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRYDIS 155 (281)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHHHHHHTCCCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHHHHhCCCCCCCCChHHHHHHHHHHcCCC
Confidence 45555555554 543 666644444444455544321 1222221 01233445677788888999988
Q ss_pred CCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 318 LTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 318 l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
++. .++|++|+|. .|.-+|.+|.... .| ..+++++++
T Consensus 156 l~g---k~vvVvG~s~iVG~p~A~lL~~~g---~~-------atVtv~h~~----------------------------- 193 (281)
T 2c2x_A 156 IAG---AHVVVIGRGVTVGRPLGLLLTRRS---EN-------ATVTLCHTG----------------------------- 193 (281)
T ss_dssp CTT---CEEEEECCCTTTHHHHHHHHTSTT---TC-------CEEEEECTT-----------------------------
T ss_pred CCC---CEEEEECCCcHHHHHHHHHHhcCC---CC-------CEEEEEECc-----------------------------
Confidence 888 9999999996 5888888876420 02 367777431
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
..+|.+.++. +|++|+..+.++.+++|+|+ +.-+|+=++-|-
T Consensus 194 t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk-------~GavVIDVgi~r 235 (281)
T 2c2x_A 194 TRDLPALTRQ--ADIVVAAVGVAHLLTADMVR-------PGAAVIDVGVSR 235 (281)
T ss_dssp CSCHHHHHTT--CSEEEECSCCTTCBCGGGSC-------TTCEEEECCEEE
T ss_pred hhHHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEccCCC
Confidence 1348999988 99999999999999999875 345788777553
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.54 Score=49.75 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=119.5
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhc---c--Cceec----------cCcchhHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRK---R--FCMFN----------DDIQGTAGVAL 304 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~---~--~~~Fn----------DDiQGTaaV~L 304 (533)
.+.+|-..+...|++++...- |..-|-=+|++..- --.+.++|+. . ..++- +.-.-||-=+.
T Consensus 114 ~s~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~ 193 (415)
T 2tmg_A 114 LSRRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVK 193 (415)
T ss_dssp SCHHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHH
Confidence 345677788999999998877 77788889998752 2235566643 1 12332 22234666666
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhh-h
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAA-A 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k-~ 382 (533)
-++-.+++..|.+++. .||+|.|.|..|...|++|.+ +.|. +++ +.|++|-+++.. .|+..+ .
T Consensus 194 ~~~~~~~~~~g~~l~g---~~vaVqG~GnVG~~~a~~L~e----~~Ga-------kvVavsD~~G~i~dp~-Gld~~~l~ 258 (415)
T 2tmg_A 194 VCAGLAMDVLGIDPKK---ATVAVQGFGNVGQFAALLISQ----ELGS-------KVVAVSDSRGGIYNPE-GFDVEELI 258 (415)
T ss_dssp HHHHHHHHHTTCCTTT---CEEEEECCSHHHHHHHHHHHH----TTCC-------EEEEEECSSCEEECTT-CCCHHHHH
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCcHHHHHHHHHHHH----hcCC-------EEEEEEeCCCeEECCC-CCCHHHHH
Confidence 6777888888988887 999999999999999988865 1343 455 999999988764 343321 1
Q ss_pred ccccccCCcCCcc--CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 383 PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 383 ~~A~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
.+......+.+.. ...+-.| +-.++.|+||=+.. ++..|++-.+.+ .-.+|.--+| |+.
T Consensus 259 ~~~~~~g~l~~y~~a~~~~~~e-il~~~~DIliP~A~-~n~i~~~~a~~l-----~ak~V~EgAN~p~t 320 (415)
T 2tmg_A 259 RYKKEHGTVVTYPKGERITNEE-LLELDVDILVPAAL-EGAIHAGNAERI-----KAKAVVEGANGPTT 320 (415)
T ss_dssp HHHHHSSCSTTCSSSEEECHHH-HTTCSCSEEEECSS-TTSBCHHHHTTC-----CCSEEECCSSSCBC
T ss_pred HHHHhhCCcccCCCceEcCchh-hhcCCCcEEEecCC-cCccCcccHHHc-----CCeEEEeCCCcccC
Confidence 1111111111000 1113344 45578999997775 688999888877 3458888888 653
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.25 Score=53.28 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=76.1
Q ss_pred HHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCc
Q 009519 312 RAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDF 391 (533)
Q Consensus 312 r~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~ 391 (533)
|.++..+.. .+|+|+|+|..|.++|+.+... |. +++.+|++ +.+...|+...
T Consensus 266 r~~~~~l~G---ktV~IiG~G~IG~~~A~~lka~-----Ga-------~Viv~d~~-----------~~~~~~A~~~G-- 317 (494)
T 3ce6_A 266 RGTDALIGG---KKVLICGYGDVGKGCAEAMKGQ-----GA-------RVSVTEID-----------PINALQAMMEG-- 317 (494)
T ss_dssp HHHCCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC-----------HHHHHHHHHTT--
T ss_pred hccCCCCCc---CEEEEEccCHHHHHHHHHHHHC-----CC-------EEEEEeCC-----------HHHHHHHHHcC--
Confidence 345656667 9999999999999999887653 42 68888763 22222332210
Q ss_pred CCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhc
Q 009519 392 MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 392 ~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~ 459 (533)
....++.|+++. .|++|-+.+..++++++.++.|. +.-+|.-.+.... |+..+..+.
T Consensus 318 ---a~~~~l~e~l~~--aDvVi~atgt~~~i~~~~l~~mk----~ggilvnvG~~~~--eId~~aL~~ 374 (494)
T 3ce6_A 318 ---FDVVTVEEAIGD--ADIVVTATGNKDIIMLEHIKAMK----DHAILGNIGHFDN--EIDMAGLER 374 (494)
T ss_dssp ---CEECCHHHHGGG--CSEEEECSSSSCSBCHHHHHHSC----TTCEEEECSSSGG--GBCHHHHHH
T ss_pred ---CEEecHHHHHhC--CCEEEECCCCHHHHHHHHHHhcC----CCcEEEEeCCCCC--ccCHHHHHH
Confidence 012468888876 89999888878899999999994 5677777777653 676665543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.11 Score=56.02 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
|+......|+ .+.+|..+.. .+++|+|.|..|.++|+.+... |+ +++.+|++..
T Consensus 258 ~~~~~l~~gw---~~~~g~~L~G---ktVgIIG~G~IG~~vA~~l~~~-----G~-------~V~v~d~~~~-------- 311 (494)
T 3d64_A 258 GCRESLVDGI---KRATDVMIAG---KIAVVAGYGDVGKGCAQSLRGL-----GA-------TVWVTEIDPI-------- 311 (494)
T ss_dssp HHHTTHHHHH---HHHHCCCCTT---CEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECSCHH--------
T ss_pred hhhhhhhhhh---hhccccccCC---CEEEEEccCHHHHHHHHHHHHC-----CC-------EEEEEeCChH--------
Confidence 3333444552 3567888888 9999999999999999988654 43 6888887421
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
... ..+... ....+|.|+++. .|++|......++++++.++.|. +..||.=.+....
T Consensus 312 -~~~-~a~~~G------~~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK----~gAilINvgrg~v 368 (494)
T 3d64_A 312 -CAL-QAAMEG------YRVVTMEYAADK--ADIFVTATGNYHVINHDHMKAMR----HNAIVCNIGHFDS 368 (494)
T ss_dssp -HHH-HHHTTT------CEECCHHHHTTT--CSEEEECSSSSCSBCHHHHHHCC----TTEEEEECSSSSC
T ss_pred -hHH-HHHHcC------CEeCCHHHHHhc--CCEEEECCCcccccCHHHHhhCC----CCcEEEEcCCCcc
Confidence 000 001100 012469999987 99999987668999999999993 5778887887544
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.49 Score=49.32 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=99.2
Q ss_pred CCCc-eeeeecCCCchHHHHHHHHh-ccCceeccCcc---hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHH
Q 009519 263 WPKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDIQ---GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLG 337 (533)
Q Consensus 263 ~P~~-~I~~EDf~~~~af~iL~ryr-~~~~~FnDDiQ---GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~G 337 (533)
.|+. .|+--..+..|- .+ +..+ ..+++.|.--- .+|=-+++.+++..|..|..|.+ .+|.|+|.|..|..
T Consensus 56 ~~~Lk~I~~~~~G~D~i-D~-~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~~~l~g---~tvGIIGlG~IG~~ 130 (380)
T 2o4c_A 56 GSPVRFVGTCTIGTDHL-DL-DYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAE---RTYGVVGAGQVGGR 130 (380)
T ss_dssp TSCCCEEEECSSCSTTB-CH-HHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGG---CEEEEECCSHHHHH
T ss_pred CCCceEEEEcCcccchh-hH-HHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhhhcccCC---CEEEEEeCCHHHHH
Confidence 4887 888888887773 11 2222 34888886433 34445899999999999988888 99999999999999
Q ss_pred HHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec-
Q 009519 338 VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS- 416 (533)
Q Consensus 338 iA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S- 416 (533)
+|+.+... |+ +++.+|+..- +.. .. ....+|.|+++. .|+++=.-
T Consensus 131 vA~~l~~~-----G~-------~V~~~d~~~~-----------~~~---~g------~~~~~l~ell~~--aDvV~l~~P 176 (380)
T 2o4c_A 131 LVEVLRGL-----GW-------KVLVCDPPRQ-----------ARE---PD------GEFVSLERLLAE--ADVISLHTP 176 (380)
T ss_dssp HHHHHHHT-----TC-------EEEEECHHHH-----------HHS---TT------SCCCCHHHHHHH--CSEEEECCC
T ss_pred HHHHHHHC-----CC-------EEEEEcCChh-----------hhc---cC------cccCCHHHHHHh--CCEEEEecc
Confidence 99988754 43 6888886321 000 00 013579999987 89987532
Q ss_pred --c-----CCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 417 --G-----VGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 417 --~-----~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
. ..+.|+++.++.|. +..++.=.|.-
T Consensus 177 lt~~g~~~T~~li~~~~l~~mk----~gailIN~sRG 209 (380)
T 2o4c_A 177 LNRDGEHPTRHLLDEPRLAALR----PGTWLVNASRG 209 (380)
T ss_dssp CCSSSSSCCTTSBCHHHHHTSC----TTEEEEECSCG
T ss_pred CccccccchhhhcCHHHHhhCC----CCcEEEECCCC
Confidence 1 24789999999993 56788877753
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.049 Score=55.20 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+.|.++|.+|... |+- +++++|.+-=..+. ..++.+...++..+ ... ....++.+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~-----g~~------~V~L~D~~~~~~~~~~~~l~~~~~~~~~~-~~i---~~t~d~~e 74 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR-----ELA------DVVLYDVVKGMPEGKALDLSHVTSVVDTN-VSV---RAEYSYEA 74 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC------EEEEECSSSSHHHHHHHHHHHHHHHTTCC-CCE---EEECSHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCC------eEEEEECChhHHHHHHHHHHhhhhccCCC-CEE---EEeCCHHH
Confidence 5899999999999999988763 431 49999985210000 00111111111111 000 11367988
Q ss_pred HhcccCCcEEEEeccCC---CC----------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--
Q 009519 403 VVRKVKPHVLLGLSGVG---GV----------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA-- 461 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~----------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt-- 461 (533)
++++ .|++|=+.+.| |. +-+++.+.|.+ +++.-+|+=-|||... +.+-+.+.+
T Consensus 75 a~~~--aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~vi~~tNP~~~---~t~~~~~~~~~ 148 (331)
T 1pzg_A 75 ALTG--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDC---MVKVMCEASGV 148 (331)
T ss_dssp HHTT--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHH-HCTTCEEEECCSSHHH---HHHHHHHHHCC
T ss_pred HhCC--CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCcEEEEEcCchHH---HHHHHHHhcCC
Confidence 9988 89988554333 33 24678888864 7788888888999873 344454544
Q ss_pred CCcEEEecC
Q 009519 462 GENIVFASG 470 (533)
Q Consensus 462 ~Grai~AtG 470 (533)
.-.-+|++|
T Consensus 149 ~~~rviG~g 157 (331)
T 1pzg_A 149 PTNMICGMA 157 (331)
T ss_dssp CGGGEEECC
T ss_pred ChhcEEecc
Confidence 234578886
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.26 Score=48.35 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=73.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..||.|+|+|..|.++|..+.. .|... .+|+++|++- +.+...+..| . .....++.|
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~-----~g~~~----~~V~v~dr~~------~~~~~l~~~~---g-----i~~~~~~~~ 59 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIA-----NGYDP----NRICVTNRSL------DKLDFFKEKC---G-----VHTTQDNRQ 59 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHH-----TTCCG----GGEEEECSSS------HHHHHHHHTT---C-----CEEESCHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHH-----CCCCC----CeEEEEeCCH------HHHHHHHHHc---C-----CEEeCChHH
Confidence 3789999999999999998875 35432 4788888731 1121111111 0 012356888
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhc-CCCCCeEEecCCCCCcccCCHHHHhcccCC-cEEEecCCCCcceecC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNPTMNAECTAADAFKHAGE-NIVFASGSPFENVDLG 479 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~-~~erPIIFaLSNPt~~aE~tpe~A~~wt~G-rai~AtGSPf~pv~~~ 479 (533)
+++. +|++| ++..+ -..+++++.++.. ..++.+|...++..+. +..-+|... ..++- .-|+.|....
T Consensus 60 ~~~~--aDvVi-lav~p-~~~~~vl~~l~~~~l~~~~iiiS~~agi~~-----~~l~~~l~~~~~vvr-~mPn~p~~v~ 128 (280)
T 3tri_A 60 GALN--ADVVV-LAVKP-HQIKMVCEELKDILSETKILVISLAVGVTT-----PLIEKWLGKASRIVR-AMPNTPSSVR 128 (280)
T ss_dssp HHSS--CSEEE-ECSCG-GGHHHHHHHHHHHHHTTTCEEEECCTTCCH-----HHHHHHHTCCSSEEE-EECCGGGGGT
T ss_pred HHhc--CCeEE-EEeCH-HHHHHHHHHHHhhccCCCeEEEEecCCCCH-----HHHHHHcCCCCeEEE-EecCChHHhc
Confidence 8887 78876 44333 4567888888643 3566688888887763 333334322 22322 2477777663
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.1 Score=53.19 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=62.5
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
++..+++|+|||.+|.+++..+... |. +++++|++ ..| +...+..++....-.. ....++
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~-----Ga-------~V~v~dr~----~~r--~~~~~~~~~~~~~~~~--~~~~~~ 224 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGL-----GA-------QVQIFDIN----VER--LSYLETLFGSRVELLY--SNSAEI 224 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESC----HHH--HHHHHHHHGGGSEEEE--CCHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEeCC----HHH--HHHHHHhhCceeEeee--CCHHHH
Confidence 4458999999999999999887653 42 68888873 111 2222222222100000 011346
Q ss_pred HHHhcccCCcEEEEeccCCCC-----CCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGV-----FNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~-----Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.+.++. .|++|.+.+.++. ++++.++.|. +.-+|+-++.+
T Consensus 225 ~~~~~~--~DvVI~~~~~~~~~~~~li~~~~~~~~~----~g~~ivdv~~~ 269 (361)
T 1pjc_A 225 ETAVAE--ADLLIGAVLVPGRRAPILVPASLVEQMR----TGSVIVDVAVD 269 (361)
T ss_dssp HHHHHT--CSEEEECCCCTTSSCCCCBCHHHHTTSC----TTCEEEETTCT
T ss_pred HHHHcC--CCEEEECCCcCCCCCCeecCHHHHhhCC----CCCEEEEEecC
Confidence 777775 8999998876553 6888898883 45677777753
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.37 Score=49.85 Aligned_cols=137 Identities=21% Similarity=0.313 Sum_probs=76.1
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
..++.+-++.+...... .++.+++.+++--+-+..+ ++.. .+++|+|+|..|..++..+... |.
T Consensus 128 ~~a~~~~k~v~~~~~~~----~~~~s~a~~av~~a~~~~~-~l~g---~~VlIiGaG~iG~~~a~~l~~~-----G~--- 191 (404)
T 1gpj_A 128 RRAINLGKRAREETRIS----EGAVSIGSAAVELAERELG-SLHD---KTVLVVGAGEMGKTVAKSLVDR-----GV--- 191 (404)
T ss_dssp HHHHHHHHHHHHHSSTT----CSCCSHHHHHHHHHHHHHS-CCTT---CEEEEESCCHHHHHHHHHHHHH-----CC---
T ss_pred HHHhhhhccCcchhhhc----CCCccHHHHHHHHHHHHhc-cccC---CEEEEEChHHHHHHHHHHHHHC-----CC---
Confidence 34677777766543221 1222233333322222222 3455 8999999999999999888654 43
Q ss_pred hhcCeEEEEeccCccccCCCCCChhh-hccccccC-CcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHH--h
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAA-APFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKA--M 430 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k-~~~A~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~--M 430 (533)
++|+++|+. ..+ ..+|+.-. .. ....++.++++. .|++|-.++.+ ..++++.++. |
T Consensus 192 ---~~V~v~~r~-----------~~ra~~la~~~g~~~---~~~~~l~~~l~~--aDvVi~at~~~~~~~~~~~l~~~~l 252 (404)
T 1gpj_A 192 ---RAVLVANRT-----------YERAVELARDLGGEA---VRFDELVDHLAR--SDVVVSATAAPHPVIHVDDVREALR 252 (404)
T ss_dssp ---SEEEEECSS-----------HHHHHHHHHHHTCEE---CCGGGHHHHHHT--CSEEEECCSSSSCCBCHHHHHHHHH
T ss_pred ---CEEEEEeCC-----------HHHHHHHHHHcCCce---ecHHhHHHHhcC--CCEEEEccCCCCceecHHHHHHHHH
Confidence 479988863 111 12332100 00 012357888865 89999776544 4567888887 4
Q ss_pred hhcCCCCCeEEecCCCC
Q 009519 431 RESDSVKPAIFAMSNPT 447 (533)
Q Consensus 431 a~~~~erPIIFaLSNPt 447 (533)
..+...+-+++-++.|-
T Consensus 253 k~r~~~~~v~vdia~P~ 269 (404)
T 1gpj_A 253 KRDRRSPILIIDIANPR 269 (404)
T ss_dssp HCSSCCCEEEEECCSSC
T ss_pred hccCCCCEEEEEccCCC
Confidence 21122344556666654
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.13 E-value=1.2 Score=44.67 Aligned_cols=192 Identities=16% Similarity=0.124 Sum_probs=113.8
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHh-ccCceeccCcch---hHHHHHHHHHHHHHHh----------------CCCCCC
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDIQG---TAGVALAGLLGTVRAQ----------------GLSLTD 320 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr-~~~~~FnDDiQG---TaaV~LAgli~Alr~~----------------g~~l~d 320 (533)
..|+. .|+.--.+..|- . ++..+ .-++|.|----. +|=-+++.+++..|-. +..+..
T Consensus 65 ~~~~Lk~I~~~~~G~d~i-d-~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g 142 (313)
T 2ekl_A 65 KGKKLKIIARAGIGLDNI-D-TEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAG 142 (313)
T ss_dssp HCTTCCEEEECSSCCTTB-C-HHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTT
T ss_pred hCCCCeEEEEcCCCCCcc-C-HHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 45776 787777776663 2 23333 348888854333 3445788888888752 344555
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
.+|.|+|.|..|..+|+.+... |+ +++.+|+.. ... . +.... ....+|
T Consensus 143 ---~~vgIIG~G~IG~~~A~~l~~~-----G~-------~V~~~d~~~---------~~~--~-~~~~g-----~~~~~l 190 (313)
T 2ekl_A 143 ---KTIGIVGFGRIGTKVGIIANAM-----GM-------KVLAYDILD---------IRE--K-AEKIN-----AKAVSL 190 (313)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHT-----TC-------EEEEECSSC---------CHH--H-HHHTT-----CEECCH
T ss_pred ---CEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEECCCc---------chh--H-HHhcC-----ceecCH
Confidence 9999999999999999988754 43 688887631 111 1 11100 012379
Q ss_pred HHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe-----cCC
Q 009519 401 LEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA-----SGS 471 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A-----tGS 471 (533)
.|+++. .|+++=.-- ..+.++++.++.|. +..++.-.|.-..--|..-.+|.+ +|+.--| .+-
T Consensus 191 ~ell~~--aDvVvl~~P~~~~t~~li~~~~l~~mk----~ga~lIn~arg~~vd~~aL~~aL~--~g~i~ga~lDv~~~e 262 (313)
T 2ekl_A 191 EELLKN--SDVISLHVTVSKDAKPIIDYPQFELMK----DNVIIVNTSRAVAVNGKALLDYIK--KGKVYAYATDVFWNE 262 (313)
T ss_dssp HHHHHH--CSEEEECCCCCTTSCCSBCHHHHHHSC----TTEEEEESSCGGGBCHHHHHHHHH--TTCEEEEEESCCSSS
T ss_pred HHHHhh--CCEEEEeccCChHHHHhhCHHHHhcCC----CCCEEEECCCCcccCHHHHHHHHH--cCCCcEEEEecCCCC
Confidence 999987 898874421 34788899999993 577888888743322323344443 4543212 222
Q ss_pred CCcceecCCCeeeecccccceeechhhhH
Q 009519 472 PFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
|.+ + .-...--+..|+.+-|=++-
T Consensus 263 P~~----~-~~~~~L~~~~nviltPH~~~ 286 (313)
T 2ekl_A 263 PPK----E-EWELELLKHERVIVTTHIGA 286 (313)
T ss_dssp SCC----S-HHHHHHHHSTTEEECCSCTT
T ss_pred CCC----C-cccchHhhCCCEEECCccCc
Confidence 222 0 10001124578899888763
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=93.06 E-value=2.7 Score=44.93 Aligned_cols=186 Identities=14% Similarity=0.128 Sum_probs=117.5
Q ss_pred ChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhc---c--Cceecc----------CcchhHHHHHH
Q 009519 244 EGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRK---R--FCMFND----------DIQGTAGVALA 305 (533)
Q Consensus 244 ~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~---~--~~~FnD----------DiQGTaaV~LA 305 (533)
+..|-..|...||..+.+.. |..-|-=+|++..-. --+.+.|++ . .-|+-. .-.-||-=+.-
T Consensus 136 s~~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~ 215 (449)
T 1bgv_A 136 SDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVY 215 (449)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHH
Confidence 44677778888888886655 888888999987622 224455543 2 122211 22346665666
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC-Chhh---
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-DPAA--- 381 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l-~~~k--- 381 (533)
++-.+++..|.+++. .||+|-|.|..|...|++|.+. |. +=+-+.|++|-|++.. .+ ++.+
T Consensus 216 ~~~~~~~~~G~~l~g---~~v~VqG~GnVG~~~a~~L~~~-----Ga------kvVavsD~~G~i~dp~-Gi~d~edi~~ 280 (449)
T 1bgv_A 216 YVEAVMKHENDTLVG---KTVALAGFGNVAWGAAKKLAEL-----GA------KAVTLSGPDGYIYDPE-GITTEEKINY 280 (449)
T ss_dssp HHHHHHHHTTCCSTT---CEEEECCSSHHHHHHHHHHHHH-----TC------EEEEEEETTEEEECTT-CSCSHHHHHH
T ss_pred HHHHHHHHccCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEeCCceEECCC-cCCCHHHHHH
Confidence 777888888988887 9999999999999999988765 32 3344799999988754 35 2211
Q ss_pred -hcccccc-CCcCCc-----cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 382 -APFAKDP-GDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 382 -~~~A~~~-~~~~~~-----~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
..+.+.. ..+.+. ....+-.+. -.++.|+|+=+.. ++.+|++-++.+.+ |.-.||.--+| |+.
T Consensus 281 l~~~k~~~~g~v~~y~~~~~a~~i~~~e~-~~~~~Dil~P~A~-~~~I~~~na~~l~a--~g~kiV~EgAN~p~T 351 (449)
T 1bgv_A 281 MLEMRASGRNKVQDYADKFGVQFFPGEKP-WGQKVDIIMPCAT-QNDVDLEQAKKIVA--NNVKYYIEVANMPTT 351 (449)
T ss_dssp HHHHHHHCCCCTHHHHHHHTCEEEETCCG-GGSCCSEEECCSC-TTCBCHHHHHHHHH--TTCCEEECCSSSCBC
T ss_pred HHHHHhccCCChhhcccccCCEEeCchhh-hcCCcceeecccc-ccccchhhHHHHHh--cCCeEEEeCCCCcCC
Confidence 0111000 000000 000000112 2468999997774 79999999999953 34579998898 654
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.11 Score=52.10 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
.|++.+|+..|.+++. .+++|+|||.+|.+++..|.+. |. ++|+++++. .++ -+.+
T Consensus 107 ~G~~~~L~~~~~~~~~---k~vlvlGaGGaaraia~~L~~~-----G~------~~v~v~nRt----~~k------a~~L 162 (282)
T 3fbt_A 107 IGFGKMLSKFRVEIKN---NICVVLGSGGAARAVLQYLKDN-----FA------KDIYVVTRN----PEK------TSEI 162 (282)
T ss_dssp HHHHHHHHHTTCCCTT---SEEEEECSSTTHHHHHHHHHHT-----TC------SEEEEEESC----HHH------HHHH
T ss_pred HHHHHHHHHcCCCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC----HHH------HHHH
Confidence 6889999988888888 9999999999988888877653 44 589999873 111 1122
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCC--------CCHHHHHHhhhcCCCCCeEEecC-CCCCcccCCH-
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--------FNEEVLKAMRESDSVKPAIFAMS-NPTMNAECTA- 454 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--------Fteevv~~Ma~~~~erPIIFaLS-NPt~~aE~tp- 454 (533)
|..-. ..++.+.-+ +++|++|-++.. |. +..+.+ .+..+||=+. ||.+ |+
T Consensus 163 a~~~~-------~~~~~~l~~-l~~DivInaTp~-Gm~~~~~~~pi~~~~l-------~~~~~v~DlvY~P~~----T~l 222 (282)
T 3fbt_A 163 YGEFK-------VISYDELSN-LKGDVIINCTPK-GMYPKEGESPVDKEVV-------AKFSSAVDLIYNPVE----TLF 222 (282)
T ss_dssp CTTSE-------EEEHHHHTT-CCCSEEEECSST-TSTTSTTCCSSCHHHH-------TTCSEEEESCCSSSS----CHH
T ss_pred HHhcC-------cccHHHHHh-ccCCEEEECCcc-CccCCCccCCCCHHHc-------CCCCEEEEEeeCCCC----CHH
Confidence 22110 011222222 269999977653 32 344433 2567888765 8753 44
Q ss_pred -HHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 455 -ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 455 -e~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
.+|.+ .|. -+.. |......|+--++ -+-.+ .+.+.+.+.++.+.+...+..|
T Consensus 223 l~~A~~--~G~-~~~~-----------Gl~MLv~Qa~~~f--------~lwtg-~~~~~~~~~~~~~~~~~~~~~~ 275 (282)
T 3fbt_A 223 LKYARE--SGV-KAVN-----------GLYMLVSQAAASE--------EIWND-ISIDEIIVDEIFEVLEEKIKSE 275 (282)
T ss_dssp HHHHHH--TTC-EEEC-----------SHHHHHHHHHHHH--------HHHHT-CCCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHH--CcC-eEeC-----------cHHHHHHHHHHHH--------HHHcC-CCCCHHHHHHHHHHHHHhhhcc
Confidence 34433 442 2333 4555555543211 11112 3567777777777777665544
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.12 Score=51.52 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (533)
-.|++.+++..+.+++. .+++|+|||.+|.+++..|.+ .|. ++|+++|+. .++ .......
T Consensus 111 ~~G~~~~l~~~~~~l~~---k~vlVlGaGG~g~aia~~L~~-----~G~------~~v~i~~R~----~~~--a~~la~~ 170 (283)
T 3jyo_A 111 VSGFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD----TSR--AQALADV 170 (283)
T ss_dssp HHHHHHHHHHHCTTCCC---SEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSS----HHH--HHHHHHH
T ss_pred HHHHHHHHHHhCcCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEECC----HHH--HHHHHHH
Confidence 35788888888887877 999999999887777776665 354 579988773 111 1111111
Q ss_pred cccccC--CcCCccCCCCHHHHhcccCCcEEEEeccC
Q 009519 384 FAKDPG--DFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 384 ~A~~~~--~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
+..... .... ....+|.++++. +|++|-++..
T Consensus 171 ~~~~~~~~~i~~-~~~~~l~~~l~~--~DiVInaTp~ 204 (283)
T 3jyo_A 171 INNAVGREAVVG-VDARGIEDVIAA--ADGVVNATPM 204 (283)
T ss_dssp HHHHHTSCCEEE-ECSTTHHHHHHH--SSEEEECSST
T ss_pred HHhhcCCceEEE-cCHHHHHHHHhc--CCEEEECCCC
Confidence 211100 0000 012468888887 8999987753
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.18 Score=48.26 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=61.6
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccCC-CCCCh-hhhccccccCCcCCccC
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDP-AAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~r-~~l~~-~k~~~A~~~~~~~~~~~ 396 (533)
+...||.|+|+|..|.++|..|... |. +++++|++--- .+.. ..+.. ....++..... ..
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~~-----G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 80 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALADL-----GH-------EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH----VH 80 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESCHHHHHTCC-------CCHHHHGGGSTT----CE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCc----ee
Confidence 3349999999999999999998764 42 68888874211 0000 00000 01122221100 12
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHh-hhcCCCCCeEEecCCCC
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM-RESDSVKPAIFAMSNPT 447 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~M-a~~~~erPIIFaLSNPt 447 (533)
..++.|+++. +|++| ++. +.....++++.+ +... +..||.-+|||.
T Consensus 81 ~~~~~e~~~~--aDvVi-lav-p~~~~~~~~~~i~~~~l-~g~ivi~~s~~~ 127 (245)
T 3dtt_A 81 LAAFADVAAG--AELVV-NAT-EGASSIAALTAAGAENL-AGKILVDIANPL 127 (245)
T ss_dssp EEEHHHHHHH--CSEEE-ECS-CGGGHHHHHHHHCHHHH-TTSEEEECCCCE
T ss_pred ccCHHHHHhc--CCEEE-Ecc-CcHHHHHHHHHhhhhhc-CCCEEEECCCCC
Confidence 3578999988 89877 443 333445666665 3323 677999999985
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.13 Score=52.31 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|++.+++..+.+++. .+++|+|||.+|.+||..|.. .|. ++|+++++.
T Consensus 138 ~~Gf~~~L~~~~~~l~g---k~~lVlGaGG~g~aia~~L~~-----~Ga------~~V~i~nR~ 187 (315)
T 3tnl_A 138 GTGYMRALKEAGHDIIG---KKMTICGAGGAATAICIQAAL-----DGV------KEISIFNRK 187 (315)
T ss_dssp HHHHHHHHHHTTCCCTT---SEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS
T ss_pred HHHHHHHHHHcCCCccC---CEEEEECCChHHHHHHHHHHH-----CCC------CEEEEEECC
Confidence 35688888888888888 999999999877777777665 354 589999885
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.52 Score=49.74 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=78.9
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhc---cC-c---eeccC----------cchhHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRK---RF-C---MFNDD----------IQGTAGV 302 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~---~~-~---~FnDD----------iQGTaaV 302 (533)
.+.+|...+...|++++...- |..-|-=+|++..-. -.+.+.|.. .. + ++--+ -.-||-=
T Consensus 114 ~s~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~G 193 (419)
T 1gtm_A 114 LSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARG 193 (419)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhH
Confidence 345677788999999998877 777888899987411 123455533 21 2 33322 2236666
Q ss_pred HHHHHHHHHHHhCCC-CCCCCCceEEEeCchhHHHHHHHHHHH-HHHHHcCCChhhhcCeEEEE-eccCccc
Q 009519 303 ALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQ-AAARMAGNNDAFARNKFFLL-DKDGLIT 371 (533)
Q Consensus 303 ~LAgli~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~-~~~~~~Gls~~eA~~~i~lv-D~~GLi~ 371 (533)
+.-++-.+++..|.+ |+. .++.|+|.|..|..+|+++.. . |+ +++.+ |+.|-+.
T Consensus 194 v~~~~~~~~~~~G~~~l~g---ktvgI~G~G~VG~~vA~~l~~~~-----G~-------kVv~~sD~~g~~~ 250 (419)
T 1gtm_A 194 ASYTIREAAKVLGWDTLKG---KTIAIQGYGNAGYYLAKIMSEDF-----GM-------KVVAVSDSKGGIY 250 (419)
T ss_dssp HHHHHHHHHHHTTCSCSTT---CEEEEECCSHHHHHHHHHHHHTT-----CC-------EEEEEECSSCEEE
T ss_pred HHHHHHHHHHHhCCcccCC---CEEEEEcCCHHHHHHHHHHHHhc-----CC-------EEEEEeCCCcccc
Confidence 666778888888988 777 999999999999999998865 4 43 45544 7876443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.33 Score=49.54 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=59.6
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
++...+++|+|+|..|..+|+.+... |. +++++|++- .+ +...+..+.... ... .....+
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~-----Ga-------~V~~~d~~~----~~--~~~~~~~~g~~~-~~~-~~~~~~ 222 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGM-----GA-------QVTILDVNH----KR--LQYLDDVFGGRV-ITL-TATEAN 222 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESCH----HH--HHHHHHHTTTSE-EEE-ECCHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH--HHHHHHhcCceE-EEe-cCCHHH
Confidence 34559999999999999999887653 42 688888741 11 111111111100 000 001235
Q ss_pred HHHHhcccCCcEEEEeccCCC-----CCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 400 LLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
+.++++. .|++|.+.+.++ .++++.++.|. +.-+|.-+|.+
T Consensus 223 l~~~~~~--~DvVi~~~g~~~~~~~~li~~~~l~~mk----~gg~iV~v~~~ 268 (369)
T 2eez_A 223 IKKSVQH--ADLLIGAVLVPGAKAPKLVTRDMLSLMK----EGAVIVDVAVD 268 (369)
T ss_dssp HHHHHHH--CSEEEECCC-------CCSCHHHHTTSC----TTCEEEECC--
T ss_pred HHHHHhC--CCEEEECCCCCccccchhHHHHHHHhhc----CCCEEEEEecC
Confidence 7888876 899998876543 47899999993 34566666643
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.13 Score=52.27 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++.+++..+.++++ .+++|+|||.+|.+|+..|.+. |. ++|+++++.
T Consensus 133 ~Gf~~~L~~~~~~l~g---k~~lVlGAGGaaraia~~L~~~-----G~------~~v~v~nRt 181 (312)
T 3t4e_A 133 TGHIRAIKESGFDMRG---KTMVLLGAGGAATAIGAQAAIE-----GI------KEIKLFNRK 181 (312)
T ss_dssp HHHHHHHHHTTCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC------SEEEEEECS
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEECC
Confidence 4678888877888888 9999999998888887777653 54 589999873
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.23 Score=48.68 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhC-------CC--ceeeeecCCCchHHHHH--HHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCC
Q 009519 251 IVDEFMEAVHARW-------PK--AIVQFEDFQMKWAFETL--ERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLT 319 (533)
Q Consensus 251 ~vdefv~av~~~~-------P~--~~I~~EDf~~~~af~iL--~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~ 319 (533)
.+++|++.++.-| |. ..+.+=|- ++.|..+= +....+ .=+|=|-. |++.+++..
T Consensus 41 ~l~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~-~~~A~~iGAvNTi~~~-~G~NTD~~--------G~~~~l~~~----- 105 (253)
T 3u62_A 41 SFDTEIRRILEEYDGFNATIPHKERVMRYVEP-SEDAQRIKAVNCVFRG-KGYNTDWV--------GVVKSLEGV----- 105 (253)
T ss_dssp GHHHHHHHHHHHCSEEEECTTCTTGGGGGSEE-CHHHHHHTCCCEEETT-EEECCHHH--------HHHHHTTTC-----
T ss_pred HHHHHHHHHhhCCCceeecCChHHHHHHHhCC-CHHHHHcCcceEeecC-EEEcchHH--------HHHHHHHhc-----
Confidence 3677777776333 32 24555565 66665541 000001 33455543 577777643
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
++.. |++|+|||.+|.+++..|.+. |. ++|+++|+. .++ -+.+++.-.. ....+
T Consensus 106 ~~~~-~vliiGaGg~a~ai~~~L~~~-----G~------~~I~v~nR~----~~k------a~~la~~~~~----~~~~~ 159 (253)
T 3u62_A 106 EVKE-PVVVVGAGGAARAVIYALLQM-----GV------KDIWVVNRT----IER------AKALDFPVKI----FSLDQ 159 (253)
T ss_dssp CCCS-SEEEECCSHHHHHHHHHHHHT-----TC------CCEEEEESC----HHH------HHTCCSSCEE----EEGGG
T ss_pred CCCC-eEEEECcHHHHHHHHHHHHHc-----CC------CEEEEEeCC----HHH------HHHHHHHccc----CCHHH
Confidence 3456 999999999999998887653 54 579999883 111 1122221100 01245
Q ss_pred HHHHhcccCCcEEEEeccCC-----CCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 400 LLEVVRKVKPHVLLGLSGVG-----GVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~-----g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
+.++++. +|++|-++..+ ..+.++.+ .+..+|+-++-
T Consensus 160 ~~~~~~~--aDiVInatp~gm~p~~~~i~~~~l-------~~~~~V~Divy 201 (253)
T 3u62_A 160 LDEVVKK--AKSLFNTTSVGMKGEELPVSDDSL-------KNLSLVYDVIY 201 (253)
T ss_dssp HHHHHHT--CSEEEECSSTTTTSCCCSCCHHHH-------TTCSEEEECSS
T ss_pred HHhhhcC--CCEEEECCCCCCCCCCCCCCHHHh-------CcCCEEEEeeC
Confidence 7888877 89999665421 13444332 25678877653
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=51.43 Aligned_cols=99 Identities=23% Similarity=0.233 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCc-eeeeecCCCchHHHHHHHHhcc------C-c-eeccC--cchhHHHHHHHHHHHHHHhCCCCCC
Q 009519 252 VDEFMEAVHARWPKA-IVQFEDFQMKWAFETLERYRKR------F-C-MFNDD--IQGTAGVALAGLLGTVRAQGLSLTD 320 (533)
Q Consensus 252 vdefv~av~~~~P~~-~I~~EDf~~~~af~iL~ryr~~------~-~-~FnDD--iQGTaaV~LAgli~Alr~~g~~l~d 320 (533)
++++++.++. +++ +++.--=-...+++++++.-+. + + ++++| ..|.-.= -.|++.+|+..+.++++
T Consensus 50 l~~~~~~~~~--~~~~G~nVTiP~K~~v~~~ld~l~~~A~~iGAVNTv~~~~~g~l~G~NTD-~~G~~~~L~~~~~~l~~ 126 (281)
T 3o8q_A 50 FTEAAKHFFA--QGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTD-GEGLVQDLLAQQVLLKG 126 (281)
T ss_dssp HHHHHHHHHH--TTCCEEEECTTSHHHHHHHCSEECHHHHHHTCCSEEEECTTSCEEEECCH-HHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHh--CCCCEEEECCccHHHHHHHHhhcCHHHHhhCeeeEEEEcCCCcEEEEecH-HHHHHHHHHHhCCCccC
Confidence 5667776664 232 5544332334455555554332 1 2 34444 3341111 35788888888888888
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+++|+|||.+|.+++..|.+ .|. ++|+++++.
T Consensus 127 ---k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~ 159 (281)
T 3o8q_A 127 ---ATILLIGAGGAARGVLKPLLD-----QQP------ASITVTNRT 159 (281)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHT-----TCC------SEEEEEESS
T ss_pred ---CEEEEECchHHHHHHHHHHHh-----cCC------CeEEEEECC
Confidence 999999999888887777654 354 479999873
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.64 Score=48.58 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=93.4
Q ss_pred cCceeccCc---chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE
Q 009519 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL 364 (533)
Q Consensus 288 ~~~~FnDDi---QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lv 364 (533)
-+.+.|--- +.+|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 84 gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g~~l~g---ktvGIIGlG~IG~~vA~~l~a~-----G~-------~V~~~ 148 (381)
T 3oet_A 84 GIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRD---RTIGIVGVGNVGSRLQTRLEAL-----GI-------RTLLC 148 (381)
T ss_dssp TCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEE
T ss_pred CEEEEECCCcCcchhHHHHHHHHHHHHHhcCCccCC---CEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 366666532 345556899999999999988888 9999999999999999998764 44 68888
Q ss_pred eccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEecc--------CCCCCCHHHHHHhhhcCCC
Q 009519 365 DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG--------VGGVFNEEVLKAMRESDSV 436 (533)
Q Consensus 365 D~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~--------~~g~Fteevv~~Ma~~~~e 436 (533)
|+.. . ... .. ....+|.|+++. .|+++=.-- ..+.|+++.++.|. +
T Consensus 149 d~~~----~-------~~~---~~------~~~~sl~ell~~--aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk----~ 202 (381)
T 3oet_A 149 DPPR----A-------ARG---DE------GDFRTLDELVQE--ADVLTFHTPLYKDGPYKTLHLADETLIRRLK----P 202 (381)
T ss_dssp CHHH----H-------HTT---CC------SCBCCHHHHHHH--CSEEEECCCCCCSSTTCCTTSBCHHHHHHSC----T
T ss_pred CCCh----H-------Hhc---cC------cccCCHHHHHhh--CCEEEEcCcCCccccccchhhcCHHHHhcCC----C
Confidence 7621 0 000 00 123579999988 898874321 35789999999993 6
Q ss_pred CCeEEecCCCCCcccCCHHHHhcccCCcEEE
Q 009519 437 KPAIFAMSNPTMNAECTAADAFKHAGENIVF 467 (533)
Q Consensus 437 rPIIFaLSNPt~~aE~tpe~A~~wt~Grai~ 467 (533)
..|+.=.|.-..--|-.-.+|++ +|+.-.
T Consensus 203 gailIN~aRG~vvde~aL~~aL~--~g~i~g 231 (381)
T 3oet_A 203 GAILINACRGPVVDNAALLARLN--AGQPLS 231 (381)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHH--TTCCEE
T ss_pred CcEEEECCCCcccCHHHHHHHHH--hCCCeE
Confidence 78888888754422333334444 555443
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.28 Score=50.84 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=95.0
Q ss_pred hHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCcee-cc---------CcchhHHHHHHHHHHHHHHh-CC-
Q 009519 249 LSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF-ND---------DIQGTAGVALAGLLGTVRAQ-GL- 316 (533)
Q Consensus 249 ~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~F-nD---------DiQGTaaV~LAgli~Alr~~-g~- 316 (533)
++++..|.+++..+... .|-=+|++..- +.+...-+++.++ -- ----||-=+.-++..+++.. |.
T Consensus 93 ~~~~r~~~~~~~~l~g~-~i~A~D~Gt~~--~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~~ 169 (364)
T 1leh_A 93 EDMFRALGRFIQGLNGR-YITAEDVGTTV--DDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSD 169 (364)
T ss_dssp HHHHHHHHHHHHTTTTS-EEBCBCTTCCH--HHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCc-eEEcccCCCCH--HHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhhcccc
Confidence 45677777777777632 56777887543 2444444444211 11 11235444455556666653 65
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
+|+. .+|+|.|+|..|..+|+.+.+. |. ++++.|++ .+.+..+...| ...
T Consensus 170 ~L~G---ktV~V~G~G~VG~~~A~~L~~~-----Ga-------kVvv~D~~------~~~l~~~a~~~---ga~------ 219 (364)
T 1leh_A 170 SLEG---LAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVN------KAAVSAAVAEE---GAD------ 219 (364)
T ss_dssp CCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC------HHHHHHHHHHH---CCE------
T ss_pred CCCc---CEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEcCC------HHHHHHHHHHc---CCE------
Confidence 6777 9999999999999999998764 43 57788852 11122222222 100
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt 447 (533)
..++.+... .+.|++|=+. ..+.++++.++.| .-.+|.--+| |+
T Consensus 220 ~v~~~~ll~-~~~DIvip~a-~~~~I~~~~~~~l-----g~~iV~e~An~p~ 264 (364)
T 1leh_A 220 AVAPNAIYG-VTCDIFAPCA-LGAVLNDFTIPQL-----KAKVIAGSADNQL 264 (364)
T ss_dssp ECCGGGTTT-CCCSEEEECS-CSCCBSTTHHHHC-----CCSEECCSCSCCB
T ss_pred EEChHHHhc-cCCcEeeccc-hHHHhCHHHHHhC-----CCcEEEeCCCCCc
Confidence 112233222 5689999654 5789999988888 2467776777 54
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.96 Score=49.05 Aligned_cols=185 Identities=18% Similarity=0.264 Sum_probs=116.2
Q ss_pred CCChhhhhHhHHHHHHHHHH-hC--CCceeeeecCCCchH--HHHHHHHhccC---------ceeccC---------cch
Q 009519 242 RLEGEEYLSIVDEFMEAVHA-RW--PKAIVQFEDFQMKWA--FETLERYRKRF---------CMFNDD---------IQG 298 (533)
Q Consensus 242 R~~g~eY~~~vdefv~av~~-~~--P~~~I~~EDf~~~~a--f~iL~ryr~~~---------~~FnDD---------iQG 298 (533)
..+..|-..+...||+.+.+ .+ |..-|-=+|++..-. --+.+.|+... |+--.- -.-
T Consensus 135 ~~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eA 214 (501)
T 3mw9_A 135 NYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISA 214 (501)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTH
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCc
Confidence 34677888999999999885 23 788888899987532 24778886431 111111 123
Q ss_pred hHHHHHHHHHH------HHHHhCC--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 299 TAGVALAGLLG------TVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 299 TaaV~LAgli~------Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
||-=+.-++-. +++..|. .|+. .||+|-|.|..|...|+.|.+. |. +-+-+.|++|-|
T Consensus 215 Tg~GV~~~~~~~l~~~~~~~~~G~~~~l~g---~tVaVQG~GNVG~~aa~~L~e~-----Ga------kVVavsDs~G~i 280 (501)
T 3mw9_A 215 TGRGVFHGIENFINEASYMSILGMTPGFGD---KTFVVQGFGNVGLHSMRYLHRF-----GA------KCITVGESDGSI 280 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTCCSSSTT---CEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEECSSCEE
T ss_pred hHHHHHHHHHHHHhhhHHHHHcCCCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceE
Confidence 44444444433 3445675 3666 9999999999999999999764 42 446689999999
Q ss_pred ccCCCCCChhhh-ccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 009519 371 TKERKNLDPAAA-PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (533)
Q Consensus 371 ~~~r~~l~~~k~-~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt 447 (533)
++.. +++..+. .+........+.+....+.+.+-.++.||||=+.. .+.+|++-++.+ .-.||.--+| |+
T Consensus 281 yd~~-Gid~~~l~~~k~~~g~i~~~~~a~~~~~~il~~~~DIliPcA~-~n~I~~~na~~l-----~akiV~EgAN~p~ 352 (501)
T 3mw9_A 281 WNPD-GIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAAS-EKQLTKSNAPRV-----KAKIIAEGANGPT 352 (501)
T ss_dssp ECTT-CCCHHHHHHHHHHHSSSTTCTTSEEECSCGGGSCCSEEEECSS-SCCBCTTTGGGC-----CCSEEECCSSSCB
T ss_pred ECCC-CCCHHHHHHHHHhcCCeecccCceeeccccccccceEEeeccc-cCccCHhHHHHc-----CceEEEeCCCCcC
Confidence 9754 3443221 11111100000000000111244578999998877 599999998887 3579999999 54
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.63 Score=45.38 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=58.8
Q ss_pred eeeeecCCCchHHHHHHHHhcc-C----ceeccCcchhHHHHHHHHHHHHHHh-CCCCCCCCCceEEEeC-chhHHHHHH
Q 009519 267 IVQFEDFQMKWAFETLERYRKR-F----CMFNDDIQGTAGVALAGLLGTVRAQ-GLSLTDFADQKIVVVG-AGSAGLGVL 339 (533)
Q Consensus 267 ~I~~EDf~~~~af~iL~ryr~~-~----~~FnDDiQGTaaV~LAgli~Alr~~-g~~l~dl~~~riv~~G-AGsAg~GiA 339 (533)
.+.++-..-..+.+++++-+.. + .+...|..|.- ..-.|++.+++.. +.+++. .+++|.| +|.+|.+++
T Consensus 61 ~~~~~G~~~~~~~~~~~~~~~~~~gavnt~~~~~~~G~n-Td~~g~~~~l~~~~~~~l~g---k~vlVtGaaGGiG~aia 136 (287)
T 1lu9_A 61 AIFVGGGDMAAGERVFEAVKKRFFGPFRVSCMLDSNGSN-TTAAAGVALVVKAAGGSVKG---KKAVVLAGTGPVGMRSA 136 (287)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCBTTBCCEEEECSTTHH-HHHHHHHHHHHHHTTSCCTT---CEEEEETCSSHHHHHHH
T ss_pred eEEEccchHHHHHHHHHHHHHhcCCCeEEEEecCCCcCC-chHHHHHHHHHHhhccCCCC---CEEEEECCCcHHHHHHH
Confidence 5556656666888999988753 1 22234555532 2356677777766 777777 9999999 899999998
Q ss_pred HHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 340 KMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 340 ~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|.+. |. +++++|++
T Consensus 137 ~~L~~~-----G~-------~V~i~~R~ 152 (287)
T 1lu9_A 137 ALLAGE-----GA-------EVVLCGRK 152 (287)
T ss_dssp HHHHHT-----TC-------EEEEEESS
T ss_pred HHHHHC-----cC-------EEEEEECC
Confidence 887753 42 48888874
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.75 Score=43.54 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=53.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|... |.. ...+++++|++ .++ + . - ....++.|+
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~-----g~~---~~~~v~~~~~~----~~~---------~--g-~-----~~~~~~~~~ 55 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA-----NII---KKENLFYYGPS----KKN---------T--T-L-----NYMSSNEEL 55 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH-----TSS---CGGGEEEECSS----CCS---------S--S-S-----EECSCHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----CCC---CCCeEEEEeCC----ccc---------C--c-e-----EEeCCHHHH
Confidence 6899999999999999988764 310 00268888863 111 0 0 0 012346666
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++. +|++| ++. +....+++++.+.. +.+..+|+.++|..+
T Consensus 56 ~~~--~D~vi-~~v-~~~~~~~v~~~l~~-~l~~~~vv~~~~gi~ 95 (262)
T 2rcy_A 56 ARH--CDIIV-CAV-KPDIAGSVLNNIKP-YLSSKLLISICGGLN 95 (262)
T ss_dssp HHH--CSEEE-ECS-CTTTHHHHHHHSGG-GCTTCEEEECCSSCC
T ss_pred Hhc--CCEEE-EEe-CHHHHHHHHHHHHH-hcCCCEEEEECCCCC
Confidence 665 67655 332 23456677776643 224556666777665
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.39 Score=49.29 Aligned_cols=96 Identities=18% Similarity=0.281 Sum_probs=63.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|.|..|..+|..|.+. |. +++++|+.- +.-..++... .....++.|+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~-----G~-------~V~v~dr~~----------~~~~~l~~~g-----~~~~~s~~e~ 75 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKG-----GH-------ECVVYDLNV----------NAVQALEREG-----IAGARSIEEF 75 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCH----------HHHHHHHTTT-----CBCCSSHHHH
T ss_pred CEEEEECchHHHHHHHHHHHhC-----CC-------EEEEEeCCH----------HHHHHHHHCC-----CEEeCCHHHH
Confidence 7999999999999999988764 42 677777631 1111222211 1124678998
Q ss_pred hccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.. +||++| ++...+ -.+++++.+.....+.-||.-+||-.+
T Consensus 76 ~~~a~~~DvVi-~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~ 119 (358)
T 4e21_A 76 CAKLVKPRVVW-LMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHY 119 (358)
T ss_dssp HHHSCSSCEEE-ECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCH
T ss_pred HhcCCCCCEEE-EeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 8873 568876 332234 778888888654567788888887553
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.12 Score=51.17 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCCc-eeeeecCCCchHHHHHHHHhcc------C-ceeccC--cchhHHHHHHHHHHH-HHHhCCCCCC
Q 009519 252 VDEFMEAVHARWPKA-IVQFEDFQMKWAFETLERYRKR------F-CMFNDD--IQGTAGVALAGLLGT-VRAQGLSLTD 320 (533)
Q Consensus 252 vdefv~av~~~~P~~-~I~~EDf~~~~af~iL~ryr~~------~-~~FnDD--iQGTaaV~LAgli~A-lr~~g~~l~d 320 (533)
++++++.++. +++ +++.--=-...+++++++..+. + ++.++| ..|.-.= ..|++.+ ++..|.+++.
T Consensus 44 l~~~~~~~~~--~~~~G~nVTiP~K~~v~~~~d~l~~~A~~iGAvNTv~~~~g~l~G~NTD-~~G~~~~lL~~~~~~l~~ 120 (272)
T 3pwz_A 44 FEAQVLQFRS--EGGKGMNITAPFKLRAFELADRRSERAQLARAANALKFEDGRIVAENFD-GIGLLRDIEENLGEPLRN 120 (272)
T ss_dssp HHHHHHHHHH--TTCCEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEEETTEEEEECCH-HHHHHHHHHTTSCCCCTT
T ss_pred HHHHHHHHhh--CCCCEEEECchhHHHHHHHHhhCCHHHHHhCccceEEccCCeEEEecCC-HHHHHHHHHHHcCCCccC
Confidence 5677776664 333 5554443344566666554332 1 233333 3442222 3578888 8777877877
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+++|+|||.+|.+++..|.+ .|. ++|+++++.
T Consensus 121 ---k~~lvlGaGg~~~aia~~L~~-----~G~------~~v~i~~R~ 153 (272)
T 3pwz_A 121 ---RRVLLLGAGGAVRGALLPFLQ-----AGP------SELVIANRD 153 (272)
T ss_dssp ---SEEEEECCSHHHHHHHHHHHH-----TCC------SEEEEECSC
T ss_pred ---CEEEEECccHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 999999999888777777665 354 479988773
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=91.99 E-value=1.5 Score=46.23 Aligned_cols=217 Identities=17% Similarity=0.158 Sum_probs=126.0
Q ss_pred CCCc-eeeeecCCCchHHHHHHHHhc-cCceeccCc---chhHHHHHHHHHHHHHHh---------C---C---CCCCCC
Q 009519 263 WPKA-IVQFEDFQMKWAFETLERYRK-RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDFA 322 (533)
Q Consensus 263 ~P~~-~I~~EDf~~~~af~iL~ryr~-~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g---~---~l~dl~ 322 (533)
.|+. .|+.-=.+..| ..+ +..++ -++|||--- ..+|=-+++.+++..|-. | + .-.+|.
T Consensus 78 ~p~Lk~I~~~~~G~d~-IDl-~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~ 155 (416)
T 3k5p_A 78 ANRLIAVGCFSVGTNQ-VEL-KAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVR 155 (416)
T ss_dssp CTTCCEEEECSSCCTT-BCH-HHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCST
T ss_pred CCCcEEEEECccccCc-cCH-HHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCC
Confidence 4554 55544444433 222 33333 488998753 345556788888887631 1 0 013455
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..++.|+|.|..|..+|+.+..+ |+ +++.+|+.. ..... -+ ....+|.|
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~yd~~~-------~~~~~---~~---------~~~~sl~e 204 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESL-----GM-------TVRYYDTSD-------KLQYG---NV---------KPAASLDE 204 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECTTC-------CCCBT---TB---------EECSSHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEECCcc-------hhccc---Cc---------EecCCHHH
Confidence 59999999999999999988654 44 788888741 11100 01 11357999
Q ss_pred HhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCC-Cccee
Q 009519 403 VVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENVD 477 (533)
Q Consensus 403 ~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSP-f~pv~ 477 (533)
+++. .|+++=.-- ..+.|+++.++.|. +..++.=.|.=..--|-.-.+|++ +|+ |.+.|.. |++-.
T Consensus 205 ll~~--aDvV~lhvPlt~~T~~li~~~~l~~mk----~gailIN~aRG~vvd~~aL~~aL~--~g~-i~gAalDVf~~EP 275 (416)
T 3k5p_A 205 LLKT--SDVVSLHVPSSKSTSKLITEAKLRKMK----KGAFLINNARGSDVDLEALAKVLQ--EGH-LAGAAIDVFPVEP 275 (416)
T ss_dssp HHHH--CSEEEECCCC-----CCBCHHHHHHSC----TTEEEEECSCTTSBCHHHHHHHHH--TTS-EEEEEECCCSSCC
T ss_pred HHhh--CCEEEEeCCCCHHHhhhcCHHHHhhCC----CCcEEEECCCChhhhHHHHHHHHH--cCC-ccEEEeCCCCCCC
Confidence 9988 899874321 23889999999993 688999888866533444445554 565 3333322 32221
Q ss_pred cCCCee--eecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhccc
Q 009519 478 LGNGKI--GHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDN 526 (533)
Q Consensus 478 ~~~G~~--~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v 526 (533)
.+.+.. ..--+..|+.+-|=+|-....++ +.|...+++.|.+..
T Consensus 276 ~~~~~~~~~pL~~~~nvilTPHig~~T~ea~-----~~~~~~~~~nl~~~l 321 (416)
T 3k5p_A 276 ASNGERFSTPLQGLENVILTPHIGGSTEEAQ-----ERIGTEVTRKLVEYS 321 (416)
T ss_dssp SSTTSCCCCTTTTCTTEEECCSCTTCCHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCcccccchhHhcCCCEEECCCCCCCCHHHH-----HHHHHHHHHHHHHHH
Confidence 111110 11235679999998874332222 445555555555443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.11 Score=55.49 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=28.4
Q ss_pred HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEE
Q 009519 424 EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIV 466 (533)
Q Consensus 424 eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai 466 (533)
.|+++.|.+ +|+.-+++=.|||.. -+| +-+.++++=++|
T Consensus 140 ~~i~~~i~~-~~P~A~~in~tNP~~--i~t-~a~~~~~~~k~v 178 (477)
T 3u95_A 140 LEIAEKMKK-MAPKAYLMQTANPVF--EIT-QAVRRWTGANII 178 (477)
T ss_dssp HHHHHHHHH-HCTTCEEEECSSCHH--HHH-HHHHHHHCCCEE
T ss_pred HHHHHHHHh-hCCCeEEEEecChHH--HHH-HHHHHhCCCCeE
Confidence 689999964 999999999999986 333 344556654444
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.082 Score=52.70 Aligned_cols=111 Identities=12% Similarity=0.193 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
.|++.+++..+.+++. .+++|+|||.+|.+++..|.+ .|. ++|+++++. .++ -+.+
T Consensus 102 ~G~~~~L~~~~~~l~~---k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~----~~~------a~~l 157 (277)
T 3don_A 102 IGYVNGLKQIYEGIED---AYILILGAGGASKGIANELYK-----IVR------PTLTVANRT----MSR------FNNW 157 (277)
T ss_dssp HHHHHHHHHHSTTGGG---CCEEEECCSHHHHHHHHHHHT-----TCC------SCCEEECSC----GGG------GTTC
T ss_pred HHHHHHHHHhCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHH------HHHH
Confidence 4577888888888888 999999999888888877765 354 478888874 122 0112
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCH--HHHHHhhhcCCCCCeEEecC-CCCC
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNE--EVLKAMRESDSVKPAIFAMS-NPTM 448 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fte--evv~~Ma~~~~erPIIFaLS-NPt~ 448 (533)
+..-.. ....++.++++. +|++|-++.. |.... +.+. . +...+..+|+=++ ||..
T Consensus 158 a~~~~~----~~~~~~~~~~~~--aDiVInaTp~-Gm~~~~~~~l~-~-~~l~~~~~V~D~vY~P~~ 215 (277)
T 3don_A 158 SLNINK----INLSHAESHLDE--FDIIINTTPA-GMNGNTDSVIS-L-NRLASHTLVSDIVYNPYK 215 (277)
T ss_dssp CSCCEE----ECHHHHHHTGGG--CSEEEECCC--------CCSSC-C-TTCCSSCEEEESCCSSSS
T ss_pred HHhccc----ccHhhHHHHhcC--CCEEEECccC-CCCCCCcCCCC-H-HHcCCCCEEEEecCCCCC
Confidence 211000 012346677766 8999976653 33221 0111 1 1134677888875 7753
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.42 Score=47.42 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=65.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc--cc--ccCCc-CCccCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF--AK--DPGDF-MGLREGA 398 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~--A~--~~~~~-~~~~~~~ 398 (533)
.||.|+|+|..|.++|..|.+.... .. ....+++++|++.-.. .+......++.. .+ +...+ .+.....
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~-~~----~~~~~V~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQ-LA----QFDPRVTMWVFEEDIG-GKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH-CT----TEEEEEEEECCCCBSS-SSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCc-cc----CCCCeEEEEEcChhhh-hhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 6999999999999999999876420 00 0003688888753210 000011100000 00 00000 0001125
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.|+++. +|++| ++. +....+++++.++....+..+|..++|-..
T Consensus 83 ~~~~~~~~--aD~Vi-lav-~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 83 DVVQAAED--ADILI-FVV-PHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp SHHHHHTT--CSEEE-ECC-CGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred CHHHHHcC--CCEEE-EeC-CHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 68888886 89877 443 445788999988653445778999999543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=91.45 E-value=0.058 Score=57.74 Aligned_cols=130 Identities=19% Similarity=0.193 Sum_probs=76.9
Q ss_pred ceEEEeCchhH-HHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccc-cccCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA-KDPGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsA-g~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A-~~~~~~~~~~~~~~L~ 401 (533)
.||.|+|||+. +.++|..|+.. ..++.. ..++|+|.+-=..+ .+.+....+. .-..+.. .....++.
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~---~~~l~~----~eV~L~Di~~e~~~---~~~~~~~~~l~~~~~~~~-I~~t~D~~ 97 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDH---LEEFPI----RKLKLYDNDKERQD---RIAGACDVFIREKAPDIE-FAATTDPE 97 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHT---TTTSCE----EEEEEECSCHHHHH---HHHHHHHHHHHHHCTTSE-EEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhC---CCCCCC----CEEEEEeCCHHHHH---HHHHHHHHHhccCCCCCE-EEEECCHH
Confidence 69999999996 44456555441 124421 47999998531111 1111111221 1000100 01235799
Q ss_pred HHhcccCCcEEEEeccCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
+++++ +|++|=..+.++. .=+++++.|.+ +++.-+|+-.|||.
T Consensus 98 eal~~--AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~-~~P~A~ii~~TNPv 174 (472)
T 1u8x_X 98 EAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEK-YSPDAWMLNYSNPA 174 (472)
T ss_dssp HHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECCSCH
T ss_pred HHHcC--CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHH-HCCCeEEEEeCCcH
Confidence 99998 8998855443211 23588888864 99999999999999
Q ss_pred CcccCCHHHHhcccCCcEEEecC
Q 009519 448 MNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 448 ~~aE~tpe~A~~wt~Grai~AtG 470 (533)
. +..+-+++.+...-+|.+|
T Consensus 175 d---i~T~~~~k~~p~~rViG~c 194 (472)
T 1u8x_X 175 A---IVAEATRRLRPNSKILNIC 194 (472)
T ss_dssp H---HHHHHHHHHSTTCCEEECC
T ss_pred H---HHHHHHHHhCCCCCEEEeC
Confidence 6 5556666666444677765
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=91.39 E-value=0.079 Score=56.94 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=75.3
Q ss_pred CceEEEeCchhHH--HHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccc-cccCCcCCccCCCC
Q 009519 323 DQKIVVVGAGSAG--LGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA-KDPGDFMGLREGAS 399 (533)
Q Consensus 323 ~~riv~~GAGsAg--~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A-~~~~~~~~~~~~~~ 399 (533)
..||.|+|||+.| .++|..|+.. .++ +-..++|+|.+-=..+ ........+. ....+. ......+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~----~~l----~~~eV~L~Di~~e~l~---~~~~~~~~~l~~~~~~~-~I~~ttD 70 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKT----PGL----SGSTVTLMDIDEERLD---AILTIAKKYVEEVGADL-KFEKTMN 70 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC----GGG----TTCEEEEECSCHHHHH---HHHHHHHHHHHHTTCCC-EEEEESC
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc----CcC----CCCEEEEEeCCHHHHH---HHHHHHHHHhccCCCCc-EEEEECC
Confidence 3699999999965 4446666531 111 1257999998531111 0111111111 100010 0012357
Q ss_pred HHHHhcccCCcEEEEeccC---------------CCCCC-------------------------HHHHHHhhhcCCCCCe
Q 009519 400 LLEVVRKVKPHVLLGLSGV---------------GGVFN-------------------------EEVLKAMRESDSVKPA 439 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---------------~g~Ft-------------------------eevv~~Ma~~~~erPI 439 (533)
+.+++++ +|++|=..++ .|.|. +++++.|.+ +++.-+
T Consensus 71 ~~eal~d--AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~-~~P~A~ 147 (480)
T 1obb_A 71 LDDVIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEK-LSPKAW 147 (480)
T ss_dssp HHHHHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHH-HCTTCE
T ss_pred HHHHhCC--CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHH-HCCCeE
Confidence 9899988 8998744421 13333 688889964 999999
Q ss_pred EEecCCCCCcccCCHHHHhcccCCcEEEecC
Q 009519 440 IFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 440 IFaLSNPt~~aE~tpe~A~~wt~Grai~AtG 470 (533)
|+-.|||.. +..+-+.++..- -+|.+|
T Consensus 148 ii~~TNPvd---i~t~~~~k~p~~-rviG~c 174 (480)
T 1obb_A 148 YLQAANPIF---EGTTLVTRTVPI-KAVGFC 174 (480)
T ss_dssp EEECSSCHH---HHHHHHHHHSCS-EEEEEC
T ss_pred EEEeCCcHH---HHHHHHHHCCCC-cEEecC
Confidence 999999996 455555666544 566665
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=91.39 E-value=1.4 Score=44.42 Aligned_cols=216 Identities=18% Similarity=0.178 Sum_probs=119.8
Q ss_pred CCc-eeeeecCCCchHHHHHHHHh-ccCceeccCc---chhHHHHHHHHHHHHHHh---------CC-----C----CCC
Q 009519 264 PKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL-----S----LTD 320 (533)
Q Consensus 264 P~~-~I~~EDf~~~~af~iL~ryr-~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~-----~----l~d 320 (533)
|+. .|+.-..+..|- . ++..+ .-++|.|--- +.+|=-+++.+++..|-. |. + -.+
T Consensus 75 ~~Lk~I~~~~~G~d~i-d-~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~ 152 (330)
T 2gcg_A 75 ANLKVISTMSVGIDHL-A-LDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYG 152 (330)
T ss_dssp TTCCEEEESSSCCTTB-C-HHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCC
T ss_pred CCceEEEECCcccccc-c-HHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcC
Confidence 666 788877777763 2 23333 3488888643 334444788888887732 11 0 034
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
|...+|.|+|.|..|..+|+.+... |+ +++.+|+..- .....+ ... . ...++
T Consensus 153 l~g~~vgIIG~G~iG~~iA~~l~~~-----G~-------~V~~~d~~~~------~~~~~~----~~g-----~-~~~~l 204 (330)
T 2gcg_A 153 LTQSTVGIIGLGRIGQAIARRLKPF-----GV-------QRFLYTGRQP------RPEEAA----EFQ-----A-EFVST 204 (330)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGG-----TC-------CEEEEESSSC------CHHHHH----TTT-----C-EECCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCCc------chhHHH----hcC-----c-eeCCH
Confidence 5559999999999999999987643 43 6888886311 111110 000 0 11278
Q ss_pred HHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe-----cCC
Q 009519 401 LEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA-----SGS 471 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A-----tGS 471 (533)
.|+++. .|++|=.-. ..+.+++++++.|. +..++.-.|.=..--|-.-.+|++ +|+.-.| ..-
T Consensus 205 ~e~l~~--aDvVi~~vp~~~~t~~~i~~~~~~~mk----~gailIn~srg~~v~~~aL~~aL~--~~~i~ga~lDv~~~e 276 (330)
T 2gcg_A 205 PELAAQ--SDFIVVACSLTPATEGLCNKDFFQKMK----ETAVFINISRGDVVNQDDLYQALA--SGKIAAAGLDVTSPE 276 (330)
T ss_dssp HHHHHH--CSEEEECCCCCTTTTTCBSHHHHHHSC----TTCEEEECSCGGGBCHHHHHHHHH--HTSSSEEEESCCSSS
T ss_pred HHHHhh--CCEEEEeCCCChHHHHhhCHHHHhcCC----CCcEEEECCCCcccCHHHHHHHHH--cCCccEEEeCCCCCC
Confidence 999987 898774321 24678888898883 466777666532211222233433 3332111 122
Q ss_pred CCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
|+++ +... -+..|+.+-|-+|-....+ ...|...+++.+......+
T Consensus 277 pl~~-----~~~l--~~~~nvi~tPh~~~~t~~~-----~~~~~~~~~~n~~~~~~g~ 322 (330)
T 2gcg_A 277 PLPT-----NHPL--LTLKNCVILPHIGSATHRT-----RNTMSLLAANNLLAGLRGE 322 (330)
T ss_dssp SCCT-----TCGG--GGCTTEEECCSCTTCBHHH-----HHHHHHHHHHHHHHHHHTC
T ss_pred CCCC-----CChh--hcCCCEEECCCCCCCcHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 2221 1111 2346888888876432221 2445555555555544333
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.35 E-value=1.4 Score=43.99 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=95.0
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCcc---hhHHHHHHHHHHHHHHh---------C------CCCCCCC
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G------LSLTDFA 322 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g------~~l~dl~ 322 (533)
..|+. .|+.--.+..|- .+..--+..++|.|---- .+|=-+++.+++..|-. | ..-.+|.
T Consensus 63 ~~~~Lk~I~~~~~G~d~i-d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~ 141 (307)
T 1wwk_A 63 SAPKLKVIARAGVGLDNI-DVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELE 141 (307)
T ss_dssp TCTTCCEEEESSSCCTTB-CHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCT
T ss_pred hCCCCeEEEECCcccccc-CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccC
Confidence 46776 788777777763 222222334888875433 34444788888887731 1 0112455
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..+|.|+|.|..|..+|+.+... |+ +++.+|+.. .. ..+.... . ...+|.|
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~-----G~-------~V~~~d~~~---------~~---~~~~~~g-~----~~~~l~e 192 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANAL-----GM-------NILLYDPYP---------NE---ERAKEVN-G----KFVDLET 192 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC---------CH---HHHHHTT-C----EECCHHH
T ss_pred CceEEEEccCHHHHHHHHHHHHC-----CC-------EEEEECCCC---------Ch---hhHhhcC-c----cccCHHH
Confidence 59999999999999999988754 43 688887631 11 1111100 0 1236999
Q ss_pred HhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 403 VVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 403 ~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
+++. .|+++=.-- ..+.++++.++.|. +..++.=.|.-.
T Consensus 193 ll~~--aDvV~l~~p~~~~t~~li~~~~l~~mk----~ga~lin~arg~ 235 (307)
T 1wwk_A 193 LLKE--SDVVTIHVPLVESTYHLINEERLKLMK----KTAILINTSRGP 235 (307)
T ss_dssp HHHH--CSEEEECCCCSTTTTTCBCHHHHHHSC----TTCEEEECSCGG
T ss_pred HHhh--CCEEEEecCCChHHhhhcCHHHHhcCC----CCeEEEECCCCc
Confidence 9987 898874421 24789999999993 577888888743
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.34 Score=51.58 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=65.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
+.+|.|+|+|..|.++|..|.+. |. +++++|+. .+ ... .+.+.... .+.....++.|
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~~r~----~~--~~~----~l~~~~~~-~gi~~~~s~~e 71 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESR-----GY-------TVSIFNRS----RE--KTE----EVIAENPG-KKLVPYYTVKE 71 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTT-----TC-------CEEEECSS----HH--HHH----HHHHHSTT-SCEEECSSHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhC-----CC-------eEEEEeCC----HH--HHH----HHHhhCCC-CCeEEeCCHHH
Confidence 48999999999999999998753 53 57777763 11 111 11111000 01112357899
Q ss_pred Hhccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++.. ++|++| ++..++...+++++.+.....+..||.-+||-.+
T Consensus 72 ~v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~ 117 (480)
T 2zyd_A 72 FVESLETPRRIL-LMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFF 117 (480)
T ss_dssp HHHTBCSSCEEE-ECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred HHhCCCCCCEEE-EECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 88753 478877 4444556788999888654455678889999765
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.56 Score=49.74 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=116.5
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhcc-----CceeccC----------cchhHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR-----FCMFNDD----------IQGTAGVAL 304 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~~-----~~~FnDD----------iQGTaaV~L 304 (533)
.+.+|...+...|++++...- |..-|-=+|++..-. -.+.++|+.. ..++.-+ -.-||-=+.
T Consensus 115 ~s~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~ 194 (421)
T 1v9l_A 115 LSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVA 194 (421)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCCHHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCCHHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHH
Confidence 345677788999999998877 788888899987311 1244666431 1222221 123555555
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhh-h
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAA-A 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k-~ 382 (533)
-++-.+++..|.+++. .+|+|.|.|..|...|++|.+. |. +++ +.|++|-|++... |+... +
T Consensus 195 ~~~~~~~~~~g~~l~g---k~vaVqG~GnVG~~aa~~L~e~-----Ga-------kVVavsD~~G~i~dp~G-lD~~~l~ 258 (421)
T 1v9l_A 195 VATREMAKKLWGGIEG---KTVAIQGMGNVGRWTAYWLEKM-----GA-------KVIAVSDINGVAYRKEG-LNVELIQ 258 (421)
T ss_dssp HHHHHHHHHHHSCCTT---CEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEEECSSCEEECTTC-CCTHHHH
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEEECCCcEEECCCC-CCHHHHH
Confidence 5677788888988888 9999999999999999888653 42 555 9999999987642 22211 1
Q ss_pred ccccccCC--cCCcc-----CCC-CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 383 PFAKDPGD--FMGLR-----EGA-SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 383 ~~A~~~~~--~~~~~-----~~~-~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
.+...... |.+-+ ... +-.| +-.++.|+|+=+.. ++.+|++-++.+ .-.||.--+| |+.
T Consensus 259 ~~k~~~g~~~v~~y~~~~~~~~~~~~~~-~~~~~~Dil~P~A~-~~~I~~~~a~~l-----~ak~V~EgAN~p~t 326 (421)
T 1v9l_A 259 KNKGLTGPALVELFTTKDNAEFVKNPDA-IFKLDVDIFVPAAI-ENVIRGDNAGLV-----KARLVVEGANGPTT 326 (421)
T ss_dssp HTTTSCHHHHHHHHHHTSCCCCCSSTTG-GGGCCCSEEEECSC-SSCBCTTTTTTC-----CCSEEECCSSSCBC
T ss_pred HHHHhhCCccccccccccCceEeCCchh-hhcCCccEEEecCc-CCccchhhHHHc-----CceEEEecCCCcCC
Confidence 11111000 00000 000 1122 33468999997774 789998888877 3578888888 653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.062 Score=54.34 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+.|.++|.++.. .|+- +++++|.+-=..++ ..++.+...+.... ... ....++ +
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~-----~g~~------~v~L~Di~~~~l~~~~~~l~~~~~~~~~~-~~i---~~t~d~-~ 68 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQ-----KNLG------DVVLFDIVKNMPHGKALDTSHTNVMAYSN-CKV---SGSNTY-D 68 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTCC------EEEEECSSSSHHHHHHHHHHTHHHHHTCC-CCE---EEECCG-G
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCHHHHHHHHHHHHhhhhhcCCC-cEE---EECCCH-H
Confidence 589999999999999888875 3541 39999975100000 00111110011111 000 112456 7
Q ss_pred HhcccCCcEEEEeccCC---CC----------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--
Q 009519 403 VVRKVKPHVLLGLSGVG---GV----------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA-- 461 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~----------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt-- 461 (533)
++++ +|++|=+.+.| |. +-+++.+.|.+ +++.-+|+-.|||... ..+-+.+.+
T Consensus 69 al~~--aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~tNP~~~---~t~~~~~~~g~ 142 (322)
T 1t2d_A 69 DLAG--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV---MVQLLHQHSGV 142 (322)
T ss_dssp GGTT--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECSSSHHH---HHHHHHHHHCC
T ss_pred HhCC--CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCChHH---HHHHHHHhcCC
Confidence 8887 89988543322 31 35677777754 6788887767999973 244454444
Q ss_pred CCcEEEecCCCCc
Q 009519 462 GENIVFASGSPFE 474 (533)
Q Consensus 462 ~Grai~AtGSPf~ 474 (533)
.-.-+|++|+..+
T Consensus 143 ~~~rviG~gt~ld 155 (322)
T 1t2d_A 143 PKNKIIGLGGVLD 155 (322)
T ss_dssp CGGGEEECCHHHH
T ss_pred ChHHEEeccCccc
Confidence 3445788875554
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.67 Score=46.09 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=61.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|.+. |.. ...+++++|+.- ++ +....+.+.. .....+..|+
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~-----G~~---~~~~V~v~~r~~----~~----~~~~~l~~~G-----~~~~~~~~e~ 81 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA-----GVL---AAHKIMASSPDM----DL----ATVSALRKMG-----VKLTPHNKET 81 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT-----TSS---CGGGEEEECSCT----TS----HHHHHHHHHT-----CEEESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CCC---CcceEEEECCCc----cH----HHHHHHHHcC-----CEEeCChHHH
Confidence 6899999999999999988753 421 013688887631 10 0111111111 0112457788
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
++. +|++| ++. +.-..+++++.++....+..+|..++|..+.
T Consensus 82 ~~~--aDvVi-lav-~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~ 123 (322)
T 2izz_A 82 VQH--SDVLF-LAV-KPHIIPFILDEIGADIEDRHIVVSCAAGVTI 123 (322)
T ss_dssp HHH--CSEEE-ECS-CGGGHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred hcc--CCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence 876 78766 333 3446677888775434456688888888763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.12 Score=51.50 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=69.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||+.|.++|..+.. .|+- ..++++|.+---..+. .++.+.. ++..+. .. ...+ .++
T Consensus 2 kI~VIGaG~vG~~la~~la~-----~g~~-----~eV~L~D~~~~~~~~~~~~l~~~~-~~~~~~-~i----~~~~-~~a 64 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVL-----RGSC-----SELVLVDRDEDRAQAEAEDIAHAA-PVSHGT-RV----WHGG-HSE 64 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTCC-----SEEEEECSSHHHHHHHHHHHTTSC-CTTSCC-EE----EEEC-GGG
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCHHHHHHHHHhhhhhh-hhcCCe-EE----EECC-HHH
Confidence 89999999999999987654 3432 3799999852100000 0011100 111110 00 0123 356
Q ss_pred hcccCCcEEEEeccCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEec
Q 009519 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFAS 469 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~At 469 (533)
++. +|++|=+.+.+.. .-+++++.|++ +++.-+|+-.|||.. ...+.+.+.+.-..+|.+
T Consensus 65 ~~~--aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~~~vi~~tNP~~---~~~~~~~~~~~~~rviG~ 138 (304)
T 2v6b_A 65 LAD--AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITR-AAPDAVLLVTSNPVD---LLTDLATQLAPGQPVIGS 138 (304)
T ss_dssp GTT--CSEEEECC------------CHHHHHHHHHHHHHHHHH-HCSSSEEEECSSSHH---HHHHHHHHHSCSSCEEEC
T ss_pred hCC--CCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHH-hCCCeEEEEecCchH---HHHHHHHHhCChhcEEeC
Confidence 777 8988744433321 22678888865 677878877999986 334444444444567777
Q ss_pred CCC
Q 009519 470 GSP 472 (533)
Q Consensus 470 GSP 472 (533)
|.-
T Consensus 139 gt~ 141 (304)
T 2v6b_A 139 GTV 141 (304)
T ss_dssp TTH
T ss_pred CcC
Confidence 644
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.11 Score=52.28 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=42.7
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
|++.||+|+|+|..|..+|+.|+.+++ .+|.++|.+=+ +..+|+. + .|... + -|.+....+
T Consensus 34 L~~~~VlVvGaGGlGs~va~~La~aGV-----------G~i~lvD~D~V---e~sNL~R-q-~~~~~--d-iG~~Ka~aa 94 (292)
T 3h8v_A 34 IRTFAVAIVGVGGVGSVTAEMLTRCGI-----------GKLLLFDYDKV---ELANMNR-L-FFQPH--Q-AGLSKVQAA 94 (292)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHHTC-----------SEEEEECCCBC-----------------C--C-TTSBHHHHH
T ss_pred HhCCeEEEECcCHHHHHHHHHHHHcCC-----------CEEEEECCCcc---Chhhccc-c-cCChh--h-cCchHHHHH
Confidence 333999999999999999999998755 69999998632 2234554 2 23211 1 111112345
Q ss_pred HHHhcccCCcEEE
Q 009519 401 LEVVRKVKPHVLL 413 (533)
Q Consensus 401 ~e~V~~vkptvLI 413 (533)
.+.++...|++=|
T Consensus 95 ~~~L~~iNP~v~v 107 (292)
T 3h8v_A 95 EHTLRNINPDVLF 107 (292)
T ss_dssp HHHHHHHCTTSEE
T ss_pred HHHHHhhCCCcEE
Confidence 6666666666644
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=91.07 E-value=0.073 Score=56.59 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=77.6
Q ss_pred ceEEEeCchhH-HHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccc-cccCCcCCccCCCCH
Q 009519 324 QKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFA-KDPGDFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsA-g~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A-~~~~~~~~~~~~~~L 400 (533)
.||.|+|||+. +.+++..|+.. ..++.. ..++|+|.+--. ++ +.+.+....+. .-..+.. .....++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~---~~~l~~----~ev~L~Di~~~~--e~~~~~~~~~~~~~~~~~~~~~-i~~t~D~ 77 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKR---YHELPV----GELWLVDIPEGK--EKLEIVGALAKRMVEKAGVPIE-IHLTLDR 77 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT---TTTCCE----EEEEEECCGGGH--HHHHHHHHHHHHHHHHTTCCCE-EEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCCCCC----CEEEEEEcCCCh--HHHHHHHHHHHHHHhhcCCCcE-EEEeCCH
Confidence 69999999997 55555555431 134421 579999985300 11 00111111221 1000100 0123579
Q ss_pred HHHhcccCCcEEEEeccCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.|++++ +|++|=..++++. .=+++++.|.+ +++.-+|+-.|||
T Consensus 78 ~eal~g--AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~-~~P~a~ii~~tNP 154 (450)
T 1s6y_A 78 RRALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEE-LCPDAWLINFTNP 154 (450)
T ss_dssp HHHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSS
T ss_pred HHHhCC--CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence 999998 8998855544321 23588888864 9999999999999
Q ss_pred CCcccCCHHHHhcccCCcEEEecC
Q 009519 447 TMNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 447 t~~aE~tpe~A~~wt~Grai~AtG 470 (533)
.. +..+-+++.+.-.-+|.+|
T Consensus 155 vd---ivT~a~~k~~p~~rViG~c 175 (450)
T 1s6y_A 155 AG---MVTEAVLRYTKQEKVVGLC 175 (450)
T ss_dssp HH---HHHHHHHHHCCCCCEEECC
T ss_pred HH---HHHHHHHHhCCCCCEEEeC
Confidence 96 5556666777443677776
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.067 Score=54.14 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=74.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+.|.++|..+.. .|+- +++++|.+-=..++ ..++.+...++... ... ....++ +
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~-----~g~~------~V~L~Di~~~~l~~~~~~l~~~~~~~~~~-~~i---~~t~d~-~ 78 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQ-----KDLG------DVYMFDIIEGVPQGKALDLNHCMALIGSP-AKI---FGENNY-E 78 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTCC------EEEEECSSTTHHHHHHHHHHHHHHHHTCC-CCE---EEESCG-G
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEECCHHHHHHHHHHHHhHhhccCCC-CEE---EECCCH-H
Confidence 589999999999999977765 3541 49999985210000 00111111111111 011 112456 7
Q ss_pred HhcccCCcEEEEecc---CCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEE
Q 009519 403 VVRKVKPHVLLGLSG---VGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~---~~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai 466 (533)
++++ +|++|=+-+ .+|. +-+++.+.+.+ +++.-+|+--|||... ..+-+.+.+ .-.-+
T Consensus 79 al~~--aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP~~~---~t~~~~~~~~~~~~rv 152 (328)
T 2hjr_A 79 YLQN--SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGK-YCPNAFVICITNPLDA---MVYYFKEKSGIPANKV 152 (328)
T ss_dssp GGTT--CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHH-HCTTCEEEECCSSHHH---HHHHHHHHHCCCGGGE
T ss_pred HHCC--CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHH-HCCCeEEEEecCchHH---HHHHHHHhcCCChhhE
Confidence 7887 898874432 2332 24567777754 6778787667999873 244444433 23457
Q ss_pred EecCCCCc
Q 009519 467 FASGSPFE 474 (533)
Q Consensus 467 ~AtGSPf~ 474 (533)
|++|++.+
T Consensus 153 iG~~t~Ld 160 (328)
T 2hjr_A 153 CGMSGVLD 160 (328)
T ss_dssp EESCHHHH
T ss_pred EEeCcHHH
Confidence 89887776
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=2.5 Score=42.62 Aligned_cols=147 Identities=20% Similarity=0.190 Sum_probs=91.3
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHh-ccCceeccCcch---hHHHHHHHHHHHHHHh-----------------CC-C-
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDIQG---TAGVALAGLLGTVRAQ-----------------GL-S- 317 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr-~~~~~FnDDiQG---TaaV~LAgli~Alr~~-----------------g~-~- 317 (533)
..|+. .|+.--.+..|- .+ +..+ .-+++.|----. +|=-+++.+|+..|-. +. +
T Consensus 64 ~~~~Lk~I~~~~~G~d~i-d~-~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~ 141 (334)
T 2dbq_A 64 NAPKLRIVANYAVGYDNI-DI-EEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPK 141 (334)
T ss_dssp TCTTCCEEEESSSCCTTB-CH-HHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTT
T ss_pred hCCCceEEEECCcccccc-cH-HHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccc
Confidence 46776 777766666652 22 2233 348888864333 3444788888887732 10 0
Q ss_pred ---CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCc
Q 009519 318 ---LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (533)
Q Consensus 318 ---l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~ 394 (533)
-.+|...+|.|+|.|..|..+|+.+... |+ +++.+|+.. .. ..+.... .
T Consensus 142 ~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~-----G~-------~V~~~d~~~---------~~---~~~~~~g-~--- 193 (334)
T 2dbq_A 142 WFLGYDVYGKTIGIIGLGRIGQAIAKRAKGF-----NM-------RILYYSRTR---------KE---EVERELN-A--- 193 (334)
T ss_dssp TTCCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC---------CH---HHHHHHC-C---
T ss_pred cccccCCCCCEEEEEccCHHHHHHHHHHHhC-----CC-------EEEEECCCc---------ch---hhHhhcC-c---
Confidence 1345559999999999999999988753 43 688888641 11 0111100 0
Q ss_pred cCCCCHHHHhcccCCcEEEEec-cC---CCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 395 REGASLLEVVRKVKPHVLLGLS-GV---GGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S-~~---~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
...+|.|+++. +|+++=.- .. .+.++++.++.|. +..+|.-.|.
T Consensus 194 -~~~~l~~~l~~--aDvVil~vp~~~~t~~~i~~~~~~~mk----~~ailIn~sr 241 (334)
T 2dbq_A 194 -EFKPLEDLLRE--SDFVVLAVPLTRETYHLINEERLKLMK----KTAILINIAR 241 (334)
T ss_dssp -EECCHHHHHHH--CSEEEECCCCCTTTTTCBCHHHHHHSC----TTCEEEECSC
T ss_pred -ccCCHHHHHhh--CCEEEECCCCChHHHHhhCHHHHhcCC----CCcEEEECCC
Confidence 12468999987 89876332 21 3678888888883 5678777775
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.24 Score=49.35 Aligned_cols=89 Identities=12% Similarity=0.244 Sum_probs=54.9
Q ss_pred HHHHHHHHHhC-CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc
Q 009519 305 AGLLGTVRAQG-LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (533)
Q Consensus 305 Agli~Alr~~g-~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (533)
.|++.+++..+ .+++. .+++|+|||.+|.++|..|.+. |. ++|+++|+. .++ .......
T Consensus 125 ~G~~~~l~~~~~~~l~~---~~vlVlGaGg~g~aia~~L~~~-----G~------~~V~v~nR~----~~k--a~~la~~ 184 (297)
T 2egg_A 125 LGYVQALEEEMNITLDG---KRILVIGAGGGARGIYFSLLST-----AA------ERIDMANRT----VEK--AERLVRE 184 (297)
T ss_dssp HHHHHHHHHHTTCCCTT---CEEEEECCSHHHHHHHHHHHTT-----TC------SEEEEECSS----HHH--HHHHHHH
T ss_pred HHHHHHHHHhCCCCCCC---CEEEEECcHHHHHHHHHHHHHC-----CC------CEEEEEeCC----HHH--HHHHHHH
Confidence 67888888777 66777 9999999999888888877653 43 479988873 111 1111111
Q ss_pred cccccCCcCCccCCCCHHHHhcccCCcEEEEeccC
Q 009519 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
+....... ....++.++++. +|++|-+...
T Consensus 185 ~~~~~~~~---~~~~~~~~~~~~--aDivIn~t~~ 214 (297)
T 2egg_A 185 GDERRSAY---FSLAEAETRLAE--YDIIINTTSV 214 (297)
T ss_dssp SCSSSCCE---ECHHHHHHTGGG--CSEEEECSCT
T ss_pred hhhccCce---eeHHHHHhhhcc--CCEEEECCCC
Confidence 11100000 011246677766 8999987764
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.26 Score=48.02 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|++.+++..|.+++. .+++|+|||.+|.++|..|.+. | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~l~~---k~vlViGaGg~g~a~a~~L~~~-----G-------~~V~v~~R~ 151 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPG---LRILLIGAGGASRGVLLPLLSL-----D-------CAVTITNRT 151 (271)
T ss_dssp HHHHHHHHHHHTCCCTT---CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS
T ss_pred HHHHHHHHHhcCcCcCC---CEEEEECCcHHHHHHHHHHHHc-----C-------CEEEEEECC
Confidence 56777888877877777 9999999998888888777653 4 268888773
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=90.72 E-value=1.5 Score=45.10 Aligned_cols=169 Identities=16% Similarity=0.233 Sum_probs=102.7
Q ss_pred HhCCCc-eeeeecCCCchH-HHHHHHHhccCceeccC-c--chhHHHHHHHHHHHHHH--------------------hC
Q 009519 261 ARWPKA-IVQFEDFQMKWA-FETLERYRKRFCMFNDD-I--QGTAGVALAGLLGTVRA--------------------QG 315 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~a-f~iL~ryr~~~~~FnDD-i--QGTaaV~LAgli~Alr~--------------------~g 315 (533)
...|+. .|+.-..+..|- ..-+.+.+.-+.|.|-- . ..+|=-+++.+++..|- .+
T Consensus 80 ~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~ 159 (364)
T 2j6i_A 80 DKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDA 159 (364)
T ss_dssp HHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTC
T ss_pred hhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCc
Confidence 346776 888888877774 23333322257777643 2 33455578888888772 23
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
..|.. .+|.|+|.|..|..+|+.+... |+ ++++.+|+... ... .+... +..
T Consensus 160 ~~l~g---~tvgIIG~G~IG~~vA~~l~~~-----G~------~~V~~~d~~~~--------~~~---~~~~~----g~~ 210 (364)
T 2j6i_A 160 YDIEG---KTIATIGAGRIGYRVLERLVPF-----NP------KELLYYDYQAL--------PKD---AEEKV----GAR 210 (364)
T ss_dssp CCSTT---CEEEEECCSHHHHHHHHHHGGG-----CC------SEEEEECSSCC--------CHH---HHHHT----TEE
T ss_pred ccCCC---CEEEEECcCHHHHHHHHHHHhC-----CC------cEEEEECCCcc--------chh---HHHhc----CcE
Confidence 44555 9999999999999999988643 43 23888876321 111 11110 000
Q ss_pred CCCCHHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEE
Q 009519 396 EGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIV 466 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai 466 (533)
...+|.|+++. .|+++=.-- ..++++++.++.|. +..+|.-.|+-..--|-.-.+|.+ +|+.-
T Consensus 211 ~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~~mk----~ga~lIn~arG~~vd~~aL~~aL~--~g~i~ 277 (364)
T 2j6i_A 211 RVENIEELVAQ--ADIVTVNAPLHAGTKGLINKELLSKFK----KGAWLVNTARGAICVAEDVAAALE--SGQLR 277 (364)
T ss_dssp ECSSHHHHHHT--CSEEEECCCCSTTTTTCBCHHHHTTSC----TTEEEEECSCGGGBCHHHHHHHHH--HTSEE
T ss_pred ecCCHHHHHhc--CCEEEECCCCChHHHHHhCHHHHhhCC----CCCEEEECCCCchhCHHHHHHHHH--cCCCc
Confidence 12469999987 899884421 12789999999993 577888888744422333334444 45533
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.67 E-value=0.45 Score=46.53 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=60.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec--cCccccCCCCCChhhhccccc--cCCcCCccCCC--
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK--DGLITKERKNLDPAAAPFAKD--PGDFMGLREGA-- 398 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~--~GLi~~~r~~l~~~k~~~A~~--~~~~~~~~~~~-- 398 (533)
||.|+|+|..|..+|..|.+. | .+++++|+ +.-- +...++...+. ...+.......
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~ 63 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTEI------LKSISAGREHPRLGVKLNGVEIFWPE 63 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHHH------HHHHHTTCCBTTTTBCCCSEEEECGG
T ss_pred EEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEEccCCHHH------HHHHHHhCcCcccCccccceEEecHH
Confidence 799999999999999988764 4 36888887 3210 00000000000 00000000112
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
++.|+++. +|++| ++. +.-..+++++.++. ..+..+|..++|-.
T Consensus 64 ~~~~~~~~--~D~vi-~~v-~~~~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 64 QLEKCLEN--AEVVL-LGV-STDGVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp GHHHHHTT--CSEEE-ECS-CGGGHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred hHHHHHhc--CCEEE-EcC-ChHHHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 67888876 88877 333 33467889988865 66677888899876
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.14 Score=44.66 Aligned_cols=32 Identities=34% Similarity=0.605 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.||+..|..|.+. |+ ++.++|+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~-----G~-------~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAA-----GH-------QVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------CEEEEECC
Confidence 4699999999999999988764 65 57778763
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=0.5 Score=47.44 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=64.2
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC---CCCH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE---GASL 400 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~---~~~L 400 (533)
||+|+|| |..|..++..|+. .|+ -..++++|.+-. .+ ....+.+...+.. ... ..++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~-----~~~-----~~ev~L~Di~~~--~~------~a~dL~~~~~~~~-l~~~~~t~d~ 62 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKN-----SPL-----VSRLTLYDIAHT--PG------VAADLSHIETRAT-VKGYLGPEQL 62 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHT-----CTT-----CSEEEEEESSSH--HH------HHHHHTTSSSSCE-EEEEESGGGH
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CcEEEEEeCCcc--HH------HHHHHhccCcCce-EEEecCCCCH
Confidence 8999998 9999998877653 354 147999998641 10 1111111110000 001 1368
Q ss_pred HHHhcccCCcEEEEeccC---CC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 401 LEVVRKVKPHVLLGLSGV---GG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+++++ +|++|=+.+. +| ...+++++.|.+ +++..+|+-.|||..
T Consensus 63 ~~a~~~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~viv~sNPv~ 121 (314)
T 1mld_A 63 PDCLKG--CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQ-HCPDAMICIISNPVN 121 (314)
T ss_dssp HHHHTT--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECSSCHH
T ss_pred HHHhCC--CCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEECCCcc
Confidence 999998 8998744333 33 346677777754 778888888999987
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.15 Score=44.46 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=53.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||+|+|+|..|..++..+.. .|. + ++++|++ .+ ..+.+++.... . .....++.++
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~-----~g~------~-v~v~~r~----~~------~~~~~a~~~~~-~-~~~~~~~~~~ 77 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSY-----PQY------K-VTVAGRN----ID------HVRAFAEKYEY-E-YVLINDIDSL 77 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCT-----TTC------E-EEEEESC----HH------HHHHHHHHHTC-E-EEECSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC------E-EEEEcCC----HH------HHHHHHHHhCC-c-eEeecCHHHH
Confidence 799999999999988876654 232 3 8888873 11 11223322100 0 0123568898
Q ss_pred hcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
++. +|++|-+++.+ ..++.++ ..+.-+|+-+++|.
T Consensus 78 ~~~--~Divi~at~~~~~~~~~~~-------l~~g~~vid~~~p~ 113 (144)
T 3oj0_A 78 IKN--NDVIITATSSKTPIVEERS-------LMPGKLFIDLGNPP 113 (144)
T ss_dssp HHT--CSEEEECSCCSSCSBCGGG-------CCTTCEEEECCSSC
T ss_pred hcC--CCEEEEeCCCCCcEeeHHH-------cCCCCEEEEccCCc
Confidence 887 89988766543 2333322 23466777777775
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=0.23 Score=48.54 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|++.+++..|..++. .+++|+|||.+|.++|..|.+. | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~~~~---~~vlvlGaGg~g~a~a~~L~~~-----G-------~~v~v~~R~ 151 (272)
T 1p77_A 103 GIGLVTDLQRLNWLRPN---QHVLILGAGGATKGVLLPLLQA-----Q-------QNIVLANRT 151 (272)
T ss_dssp HHHHHHHHHHTTCCCTT---CEEEEECCSHHHHTTHHHHHHT-----T-------CEEEEEESS
T ss_pred HHHHHHHHHHhCCCcCC---CEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 46788888887877777 9999999999888888877653 4 378888873
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.28 Score=48.60 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=59.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC--------ccccCCCCCChhhhccccccCCcCCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG--------LITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G--------Li~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
.||.|+|+|+-|..+|..|.+. | .+++++|+.- +...++ ....++ + ++. .
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g-------~~V~~~~r~~~~~i~~~Gl~~~~~-~~g~~~--~-~~~------~ 60 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-----G-------HCVSVVSRSDYETVKAKGIRIRSA-TLGDYT--F-RPA------A 60 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-----T-------CEEEEECSTTHHHHHHHCEEEEET-TTCCEE--E-CCS------C
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCChHHHHHhCCcEEeec-CCCcEE--E-eee------e
Confidence 5899999999999999988653 4 3688888753 111100 000000 0 000 0
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
-..++.++.+. +|++| ++. +--.++++++.++....+..+|+.+.|-..
T Consensus 61 ~~~~~~~~~~~--~DlVi-lav-K~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 61 VVRSAAELETK--PDCTL-LCI-KVVEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp EESCGGGCSSC--CSEEE-ECC-CCCTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred eECCHHHcCCC--CCEEE-Eec-CCCChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 12345555433 78877 554 344566899998654556678888999765
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=90.13 E-value=0.33 Score=47.39 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
.|++.+++..|..++. .|++|+|+|.+|.++|..|.+. |. +|+++|+.- + .-+.+
T Consensus 114 ~G~~~~l~~~~~~~~~---~~v~iiGaG~~g~aia~~L~~~-----g~-------~V~v~~r~~----~------~~~~l 168 (275)
T 2hk9_A 114 IGFLKSLKSLIPEVKE---KSILVLGAGGASRAVIYALVKE-----GA-------KVFLWNRTK----E------KAIKL 168 (275)
T ss_dssp HHHHHHHHHHCTTGGG---SEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSSH----H------HHHHH
T ss_pred HHHHHHHHHhCCCcCC---CEEEEECchHHHHHHHHHHHHc-----CC-------EEEEEECCH----H------HHHHH
Confidence 4788888888877777 9999999999999999888764 32 688887731 1 11122
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCC--HHHHHHhhhcCCCCCeEEecCC
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFN--EEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft--eevv~~Ma~~~~erPIIFaLSN 445 (533)
++... . ....++.++++. +|++|-+.. .+... ++.+. . +...+..+|+-++.
T Consensus 169 ~~~~g-~---~~~~~~~~~~~~--aDiVi~atp-~~~~~~~~~~i~-~-~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 169 AQKFP-L---EVVNSPEEVIDK--VQVIVNTTS-VGLKDEDPEIFN-Y-DLIKKDHVVVDIIY 222 (275)
T ss_dssp TTTSC-E---EECSCGGGTGGG--CSEEEECSS-TTSSTTCCCSSC-G-GGCCTTSEEEESSS
T ss_pred HHHcC-C---eeehhHHhhhcC--CCEEEEeCC-CCCCCCCCCCCC-H-HHcCCCCEEEEcCC
Confidence 22100 0 011257777876 899997664 34321 11221 1 11345668888887
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=0.13 Score=52.96 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=30.9
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++.||+|+|||..|..+|+.|+.+++ ++|.++|.+
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGV-----------g~ItlvD~D 67 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGV-----------RKITFVDNG 67 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTC-----------CEEEEECCC
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCC-----------CEEEEecCC
Confidence 34999999999999999999988755 699999986
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.93 Score=43.03 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=57.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCC-ChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGN-NDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gl-s~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|+|..|..+|..|.+. |. .. ++++++|++ . +.+. .+++... .....++.|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~-----g~~~~----~~V~~~~r~----~--~~~~----~~~~~~g----~~~~~~~~e 59 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK-----NIVSS----NQIICSDLN----T--ANLK----NASEKYG----LTTTTDNNE 59 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TSSCG----GGEEEECSC----H--HHHH----HHHHHHC----CEECSCHHH
T ss_pred CeEEEECccHHHHHHHHHHHhC-----CCCCC----CeEEEEeCC----H--HHHH----HHHHHhC----CEEeCChHH
Confidence 5899999999999999988763 42 21 368888763 1 1111 1221100 012356888
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++. +|++| ++. +.-..+++++.+.....+..+|...++-.+
T Consensus 60 ~~~~--aDvVi-lav-~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 60 VAKN--ADILI-LSI-KPDLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp HHHH--CSEEE-ECS-CTTTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred HHHh--CCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 8877 78876 333 444567777777543345667777777665
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.82 Score=46.74 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=61.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh--hccccccCCcC-CccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA--APFAKDPGDFM-GLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k--~~~A~~~~~~~-~~~~~~~L 400 (533)
.||.|+|+|+-|.++|..|.+. | .+++++|++--..+ .+.... ..|-.. -... ...-..++
T Consensus 30 mkI~VIGaG~mG~alA~~La~~-----G-------~~V~l~~r~~~~~~---~i~~~~~~~~~l~g-~~l~~~i~~t~d~ 93 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK-----G-------QKVRLWSYESDHVD---EMQAEGVNNRYLPN-YPFPETLKAYCDL 93 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT-----T-------CCEEEECSCHHHHH---HHHHHSSBTTTBTT-CCCCTTEEEESCH
T ss_pred CeEEEECccHHHHHHHHHHHHC-----C-------CeEEEEeCCHHHHH---HHHHcCCCcccCCC-CccCCCeEEECCH
Confidence 5899999999999999988753 4 25777777411000 010000 000000 0000 00112578
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.|+++. +|++| ++. |--+.+++++.++....+..+|..++|-..
T Consensus 94 ~ea~~~--aDvVi-laV-p~~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 94 KASLEG--VTDIL-IVV-PSFAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HHHHTT--CCEEE-ECC-CHHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HHHHhc--CCEEE-ECC-CHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 888877 78766 332 444778888888654556778888888655
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.15 Score=50.80 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=62.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh------ccccccCCcCCccCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA------PFAKDPGDFMGLREG 397 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~------~~A~~~~~~~~~~~~ 397 (533)
.||.|+|||+.|.++|..+... |+. +++++|.+- ++ +..... .+....... ...
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~-----g~~------~V~l~D~~~----~~--~~~~~~~l~~~~~~~~~~~~i---~~t 64 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD-----NLA------DVVLFDIAE----GI--PQGKALDITHSMVMFGSTSKV---IGT 64 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC------EEEEECSSS----SH--HHHHHHHHHHHHHHHTCCCCE---EEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCc------eEEEEeCCc----hH--HHHHHHHHHhhhhhcCCCcEE---EEC
Confidence 6899999999999999998764 431 599999752 11 111000 111001000 112
Q ss_pred CCHHHHhcccCCcEEEEeccCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~---g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
.++ ++++. +|++|=+-+.| | .+.+++++.+.+ +++.-||+-.|||...
T Consensus 65 ~d~-~a~~~--aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~-~~~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 65 DDY-ADISG--SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKK-YCPNAFVICITNPLDV 126 (317)
T ss_dssp SCG-GGGTT--CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSHHH
T ss_pred CCH-HHhCC--CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHH-HCCCcEEEEeCChHHH
Confidence 456 77877 89887444333 2 134677777754 6788899999999863
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=0.27 Score=50.10 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.||.|+|||..|.|||..++.+ |+ ++.++|.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~-----G~-------~V~l~D~ 37 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG-----GF-------RVKLYDI 37 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECS
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 6899999999999999888764 54 5788885
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=0.19 Score=49.30 Aligned_cols=32 Identities=28% Similarity=0.652 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT-----GH-------TVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5899999999999999998753 43 68888874
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.48 Score=47.96 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=63.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh-----ccccccCCc-CCccCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-----PFAKDPGDF-MGLREG 397 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~-----~~A~~~~~~-~~~~~~ 397 (533)
.||.|+|+|..|.++|..|.++... .. .-..+++++|+..-+. .+......+. .|- +.... .+....
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~-~~----~~~~~V~~~~r~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~~i~~~ 94 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKN-NY----LFENEVRMWIRDEFVN-GERMVDIINNKHENTKYL-KGVPLPHNIVAH 94 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHH-CT----TBCSCEEEECCSCC----CCHHHHHHHHCBCTTTS-TTCBCCTTEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCc-cC----CCCCeEEEEECChhhh-hHHHHHHHHhcCcccccC-CcccCcCCeEEE
Confidence 4899999999999999999876531 00 0003688888753210 0000111000 000 00000 000112
Q ss_pred CCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhh----cCCCCCeEEecCCCCC
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE----SDSVKPAIFAMSNPTM 448 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~----~~~erPIIFaLSNPt~ 448 (533)
.++.|+++. +|++| ++. +.-..+++++.++. ...+..+|..++|-.+
T Consensus 95 ~~~~ea~~~--aDvVi-lav-~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~ 145 (375)
T 1yj8_A 95 SDLASVIND--ADLLI-FIV-PCQYLESVLASIKESESIKIASHAKAISLTKGFI 145 (375)
T ss_dssp SSTHHHHTT--CSEEE-ECC-CHHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred CCHHHHHcC--CCEEE-EcC-CHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence 467888877 88766 332 34577888888853 3445678889999654
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.48 E-value=0.32 Score=51.84 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=65.0
Q ss_pred CceEEEeCchhH--HHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 323 DQKIVVVGAGSA--GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 323 ~~riv~~GAGsA--g~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+.||.|+||||. |.|++..|+.. ..+ . ..|+|+|.+- ++ +.+......+.+ .++. .....+
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~----~~~----~-geV~L~Di~~----e~le~~~~~~~~l~~--~~~~-I~~TtD 68 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSID----ERM----S-GTVALYDLDF----EAAQKNEVIGNHSGN--GRWR-YEAVST 68 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHC----SSC----C-EEEEEECSSH----HHHHHHHHHHTTSTT--SCEE-EEEESS
T ss_pred CCEEEEECCChhHhHHHHHHHHHhc----ccc----C-CeEEEEeCCH----HHHHHHHHHHHHHhc--cCCe-EEEECC
Confidence 379999999996 68999888752 222 1 3899999752 11 000000011111 1100 112367
Q ss_pred HHHHhcccCCcEEEEeccCC---------------CC---------------------CCHHHHHHhhhcCCCCCeEEec
Q 009519 400 LLEVVRKVKPHVLLGLSGVG---------------GV---------------------FNEEVLKAMRESDSVKPAIFAM 443 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---------------g~---------------------Fteevv~~Ma~~~~erPIIFaL 443 (533)
+.||+++ +|++|=.-.++ |. .-.++++.|.+ ++++-+++-.
T Consensus 69 ~~eAl~d--ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~-~~p~a~~i~~ 145 (450)
T 3fef_A 69 LKKALSA--ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRD-YAPESWVINY 145 (450)
T ss_dssp HHHHHTT--CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSEEEEC
T ss_pred HHHHhcC--CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 9999999 89887332211 22 13567777754 8999999999
Q ss_pred CCCCC
Q 009519 444 SNPTM 448 (533)
Q Consensus 444 SNPt~ 448 (533)
|||..
T Consensus 146 tNPvd 150 (450)
T 3fef_A 146 TNPMS 150 (450)
T ss_dssp CSSHH
T ss_pred cCchH
Confidence 99996
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=0.37 Score=49.50 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=61.2
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
++...+++|+|+|..|..+|+.+... |. +++.+|++. . .+...+..+.... ... .....+
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~~-----Ga-------~V~~~d~~~----~--~l~~~~~~~g~~~-~~~-~~~~~~ 224 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANGM-----GA-------TVTVLDINI----D--KLRQLDAEFCGRI-HTR-YSSAYE 224 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESCH----H--HHHHHHHHTTTSS-EEE-ECCHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEeCCH----H--HHHHHHHhcCCee-Eec-cCCHHH
Confidence 45559999999999999999888653 42 688888731 1 1111111111100 000 001235
Q ss_pred HHHHhcccCCcEEEEeccCC-----CCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 400 LLEVVRKVKPHVLLGLSGVG-----GVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~-----g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+.+.++. .|++|.+...+ ..++++.++.|. +.-+|.-+|
T Consensus 225 l~~~l~~--aDvVi~~~~~p~~~t~~li~~~~l~~mk----~g~~iV~va 268 (377)
T 2vhw_A 225 LEGAVKR--ADLVIGAVLVPGAKAPKLVSNSLVAHMK----PGAVLVDIA 268 (377)
T ss_dssp HHHHHHH--CSEEEECCCCTTSCCCCCBCHHHHTTSC----TTCEEEEGG
T ss_pred HHHHHcC--CCEEEECCCcCCCCCcceecHHHHhcCC----CCcEEEEEe
Confidence 7888876 89999876544 457999999993 455666666
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=4.4 Score=42.28 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=98.7
Q ss_pred CCCc-eeeeecCCCchHHHHHHHHh-ccCceeccCcc---hhHHHHHHHHHHHHHHh---------C---C---CCCCCC
Q 009519 263 WPKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G---L---SLTDFA 322 (533)
Q Consensus 263 ~P~~-~I~~EDf~~~~af~iL~ryr-~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g---~---~l~dl~ 322 (533)
.|+. .|+.-=.+..|- . ++..+ .-++|||---- .+|=-++|.+++..|-. | + .-.+|.
T Consensus 67 ~~~Lk~I~~~~~G~d~i-D-~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~ 144 (404)
T 1sc6_A 67 AEKLVAIGAFAIGTNQV-D-LDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEAR 144 (404)
T ss_dssp CSSCCEEEECSSCCTTB-C-HHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCST
T ss_pred CCCCcEEEECCcccCcc-C-HHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccC
Confidence 4665 565555555442 2 22223 34888886543 45555788888888741 1 0 112455
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..++.|+|-|..|..+|+.+... |+ +++.+|+..- ..+. -+ ....+|.|
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~-----G~-------~V~~~d~~~~-----~~~~-----~~---------~~~~~l~e 193 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESL-----GM-------YVYFYDIENK-----LPLG-----NA---------TQVQHLSD 193 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSCC-----CCCT-----TC---------EECSCHHH
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEEcCCch-----hccC-----Cc---------eecCCHHH
Confidence 59999999999999999988754 43 6888887321 0000 01 11247999
Q ss_pred HhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcE
Q 009519 403 VVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Gra 465 (533)
+++. .|+++=.- ...+.|+++.++.|. +..++.=.|.=..--|-.-.+|++ +|+.
T Consensus 194 ll~~--aDvV~l~~P~t~~t~~li~~~~l~~mk----~ga~lIN~aRg~~vd~~aL~~aL~--~g~i 252 (404)
T 1sc6_A 194 LLNM--SDVVSLHVPENPSTKNMMGAKEISLMK----PGSLLINASRGTVVDIPALADALA--SKHL 252 (404)
T ss_dssp HHHH--CSEEEECCCSSTTTTTCBCHHHHHHSC----TTEEEEECSCSSSBCHHHHHHHHH--TTSE
T ss_pred HHhc--CCEEEEccCCChHHHHHhhHHHHhhcC----CCeEEEECCCChHHhHHHHHHHHH--cCCc
Confidence 9988 89887431 123789999999993 577888888644322222234444 5543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.38 E-value=0.38 Score=47.65 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=60.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCCh---hhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDP---AAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~---~k~~~A~~~~~~~~~~~~~~ 399 (533)
.||.|+|||+.|.++|..|... |+. ..++++|++- ++ +.+.. +-..+... ... ....+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-----g~~-----~~V~l~d~~~----~~~~~~~~~l~~~~~~~~~--~~~--~~~~d 63 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-----GVA-----DDYVFIDANE----AKVKADQIDFQDAMANLEA--HGN--IVIND 63 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSH----HHHHHHHHHHHHHGGGSSS--CCE--EEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCC-----CEEEEEcCCH----HHHHHHHHHHHhhhhhcCC--CeE--EEeCC
Confidence 3899999999999999988653 441 4799999841 11 01110 00011100 000 00235
Q ss_pred HHHHhcccCCcEEEEeccC-------CCCC-----------CHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 400 LLEVVRKVKPHVLLGLSGV-------GGVF-----------NEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~-------~g~F-----------teevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+ ++++. +|++|=+-.. +|.. -+++++.|.+ ++++.+|+-+|||..
T Consensus 64 ~-~~~~~--aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~-~~~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 64 W-AALAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE-SGFHGVLVVISNPVD 126 (309)
T ss_dssp G-GGGTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHH
T ss_pred H-HHhCC--CCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCcEEEEEcCcHH
Confidence 6 67776 8987743332 2211 2588888854 677778888999986
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.84 Score=48.87 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=63.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccc-ccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-DPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~-~~~~~~~~~~~~~L~e 402 (533)
.+|.|+|+|..|.++|..|.+. |. +++++|+.- +.-..+.. .... .+.....++.|
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~dr~~----------~~~~~l~~~~~~~-~gi~~~~s~~e 67 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH-----GF-------TVCAYNRTQ----------SKVDHFLANEAKG-KSIIGATSIED 67 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSS----------HHHHHHHHTTTTT-SSEECCSSHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHC-----CC-------EEEEEeCCH----------HHHHHHHcccccC-CCeEEeCCHHH
Confidence 5899999999999999998763 53 577777631 11111211 0000 01112357888
Q ss_pred Hhccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++.. +||++| ++..++...+++++.+.....+..||.-+||-.+
T Consensus 68 ~v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~ 113 (497)
T 2p4q_A 68 FISKLKRPRKVM-LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHF 113 (497)
T ss_dssp HHHTSCSSCEEE-ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred HHhcCCCCCEEE-EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence 88753 478776 4443455778888888654455678888988654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=0.37 Score=47.02 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH-----GF-------AVTAYDIN 36 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 6899999999999999988764 53 68888874
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=89.10 E-value=0.42 Score=50.27 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=78.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHH-HcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAAR-MAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~-~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.||.|+|||+. ++..++..+.. ..++. -..|+|+|.+- +|.. ..+....+++..... ....++.
T Consensus 3 ~KI~IIGaG~v---~~~~l~~~l~~~~~~l~----~~el~L~Di~~----~~~~~~~~~~~~~~~~~~~v---~~t~d~~ 68 (417)
T 1up7_A 3 MRIAVIGGGSS---YTPELVKGLLDISEDVR----IDEVIFYDIDE----EKQKIVVDFVKRLVKDRFKV---LISDTFE 68 (417)
T ss_dssp CEEEEETTTCT---THHHHHHHHHHHTTTSC----CCEEEEECSCH----HHHHHHHHHHHHHHTTSSEE---EECSSHH
T ss_pred CEEEEECCCHH---HHHHHHHHHHhcccCCC----cCEEEEEeCCH----HHHHHHHHHHHHHhhCCeEE---EEeCCHH
Confidence 69999999995 66655444442 24542 25799999742 2200 111111111111111 1135788
Q ss_pred HHhcccCCcEEEEeccCCC---------------CC-------------------CHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGG---------------VF-------------------NEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g---------------~F-------------------teevv~~Ma~~~~erPIIFaLSNPt 447 (533)
+++++ +|++|=..++++ .+ =.++++.|.+ ++ ..+|+-.|||.
T Consensus 69 ~al~~--AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~-~~-~A~lin~TNPv 144 (417)
T 1up7_A 69 GAVVD--AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRK-TS-NATIVNFTNPS 144 (417)
T ss_dssp HHHTT--CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHH-TT-CCEEEECSSSH
T ss_pred HHhCC--CCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHH-HC-CEEEEEeCChH
Confidence 99998 999986665542 22 3588899964 99 99999999998
Q ss_pred CcccCCHHHHhcccCCcEEEecC
Q 009519 448 MNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 448 ~~aE~tpe~A~~wt~Grai~AtG 470 (533)
. +..+-+++.+.-.-+|.+|
T Consensus 145 d---i~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 145 G---HITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp H---HHHHHHHHTTCCSSEEECC
T ss_pred H---HHHHHHHHhCCCCCEEEeC
Confidence 6 5556666777443677776
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.4 Score=42.23 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|+|..|..+|+.|... | .+++++|++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~-----g-------~~V~vid~~ 51 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS-----G-------HSVVVVDKN 51 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECC
Confidence 7999999999999999988653 4 278889874
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.83 E-value=0.64 Score=45.82 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=56.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccc---ccc--C-CcCCccCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA---KDP--G-DFMGLREG 397 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A---~~~--~-~~~~~~~~ 397 (533)
.||.|+|+|..|..+|..|... | .+++++|++.= .+...+.... ... . ........
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK-----G-------QSVLAWDIDAQ------RIKEIQDRGAIIAEGPGLAGTAHPDLLT 66 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSCHH------HHHHHHHHTSEEEESSSCCEEECCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeCCHH------HHHHHHhcCCeEEeccccccccccceec
Confidence 6899999999999999887653 4 25888877421 0111111000 000 0 00000013
Q ss_pred CCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
.++.++++. +|++| ++. +....+++++.+++...+..+|+.+.|
T Consensus 67 ~~~~~~~~~--~D~vi-~~v-~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 67 SDIGLAVKD--ADVIL-IVV-PAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp SCHHHHHTT--CSEEE-ECS-CGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred CCHHHHHhc--CCEEE-EeC-CchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 568888876 88877 332 333458888888654455666776755
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=88.64 E-value=1.2 Score=44.23 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=27.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..|... |. ++++++|++
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~-----G~------~~V~~~dr~ 57 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQA-----GA------IDMAAYDAA 57 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----SC------CEEEEECSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC------CeEEEEcCC
Confidence 6899999999999999999865 42 378888873
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=2.1 Score=43.50 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=90.4
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|...+|.|+|.|..|..+|+.+... |+ +++.+|+..- . .. .+ ....+
T Consensus 161 ~l~g~~vgIIG~G~iG~~vA~~l~~~-----G~-------~V~~~dr~~~----~--~~----g~----------~~~~~ 208 (333)
T 3ba1_A 161 KFSGKRVGIIGLGRIGLAVAERAEAF-----DC-------PISYFSRSKK----P--NT----NY----------TYYGS 208 (333)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTT-----TC-------CEEEECSSCC----T--TC----CS----------EEESC
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCCch----h--cc----Cc----------eecCC
Confidence 44459999999999999999988643 43 6888886421 1 10 00 01246
Q ss_pred HHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEE-----EecC
Q 009519 400 LLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIV-----FASG 470 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai-----~AtG 470 (533)
|.|+++. .|+++=.- ...+.++++.++.|. +..+|.-.|.-..--|-.-.+|++ +|+.- |-.+
T Consensus 209 l~ell~~--aDvVil~vP~~~~t~~li~~~~l~~mk----~gailIn~srG~~vd~~aL~~aL~--~g~i~ga~lDv~~~ 280 (333)
T 3ba1_A 209 VVELASN--SDILVVACPLTPETTHIINREVIDALG----PKGVLINIGRGPHVDEPELVSALV--EGRLGGAGLDVFER 280 (333)
T ss_dssp HHHHHHT--CSEEEECSCCCGGGTTCBCHHHHHHHC----TTCEEEECSCGGGBCHHHHHHHHH--HTSSCEEEESCCTT
T ss_pred HHHHHhc--CCEEEEecCCChHHHHHhhHHHHhcCC----CCCEEEECCCCchhCHHHHHHHHH--cCCCeEEEEecCCC
Confidence 8999987 89877432 124788899999993 567887777654422222334433 33321 1122
Q ss_pred CCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 471 SPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 471 SPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
-|.++ ..--+..|+.+-|=++-....+ ...|...+++.|.+....+
T Consensus 281 EP~~~--------~~L~~~~nviltPH~~~~t~e~-----~~~~~~~~~~nl~~~~~g~ 326 (333)
T 3ba1_A 281 EPEVP--------EKLFGLENVVLLPHVGSGTVET-----RKVMADLVVGNLEAHFSGK 326 (333)
T ss_dssp TTCCC--------GGGGGCTTEEECSSCTTCSHHH-----HHHHHHHHHHHHHHHHHTC
T ss_pred CCCCc--------chhhcCCCEEECCcCCCCCHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 23211 1122457888888776422211 2445555666665544433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=88.43 E-value=2 Score=44.09 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=115.6
Q ss_pred CCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHH--------------------hCCCC
Q 009519 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRA--------------------QGLSL 318 (533)
Q Consensus 263 ~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~--------------------~g~~l 318 (533)
.|+. .|+.--.+..|- .+-.--+.-+.+.|--- +.+|=-+++-+++..|- .+..|
T Consensus 84 ~p~Lk~i~~~g~G~d~i-d~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l 162 (351)
T 3jtm_A 84 AKNLKLLLTAGIGSDHI-DLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDL 162 (351)
T ss_dssp CSSCCEEEESSSCCTTB-CHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCS
T ss_pred CCCCeEEEEeCeeeccc-CHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccc
Confidence 5665 666555555442 22111123466665322 23444578888887763 13445
Q ss_pred CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCC
Q 009519 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.. .+|.|+|.|..|..+|+.+... |+ +++.+|+... +.. .+.... .....
T Consensus 163 ~g---ktvGIIG~G~IG~~vA~~l~~~-----G~-------~V~~~dr~~~--------~~~---~~~~~g----~~~~~ 212 (351)
T 3jtm_A 163 EG---KTIGTVGAGRIGKLLLQRLKPF-----GC-------NLLYHDRLQM--------APE---LEKETG----AKFVE 212 (351)
T ss_dssp TT---CEEEEECCSHHHHHHHHHHGGG-----CC-------EEEEECSSCC--------CHH---HHHHHC----CEECS
T ss_pred cC---CEEeEEEeCHHHHHHHHHHHHC-----CC-------EEEEeCCCcc--------CHH---HHHhCC----CeEcC
Confidence 55 9999999999999999988754 44 5887876421 111 111100 00124
Q ss_pred CHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCc
Q 009519 399 SLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~ 474 (533)
+|.|+++. .|+++=.- ...+.|+++.++.|. +..+|.=.|+-..--|-.-.+|++ +|+.--|.--=|.
T Consensus 213 ~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l~~mk----~gailIN~aRG~~vde~aL~~aL~--~g~i~ga~lDV~~ 284 (351)
T 3jtm_A 213 DLNEMLPK--CDVIVINMPLTEKTRGMFNKELIGKLK----KGVLIVNNARGAIMERQAVVDAVE--SGHIGGYSGDVWD 284 (351)
T ss_dssp CHHHHGGG--CSEEEECSCCCTTTTTCBSHHHHHHSC----TTEEEEECSCGGGBCHHHHHHHHH--HTSEEEEEESCCS
T ss_pred CHHHHHhc--CCEEEECCCCCHHHHHhhcHHHHhcCC----CCCEEEECcCchhhCHHHHHHHHH--hCCccEEEeCCCC
Confidence 79999988 89987331 224789999999993 678988888755433444445554 5654433322222
Q ss_pred ceecCCCeeeecccccceeechhhhHHHHHh
Q 009519 475 NVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505 (533)
Q Consensus 475 pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~ 505 (533)
+-..+.. ..--+..|+.+-|=++-....+
T Consensus 285 ~EP~~~~--~pL~~~~nvilTPHia~~t~ea 313 (351)
T 3jtm_A 285 PQPAPKD--HPWRYMPNQAMTPHTSGTTIDA 313 (351)
T ss_dssp SSSCCTT--CGGGTSTTBCCCCSCGGGSHHH
T ss_pred CCCCCCC--ChhhcCCCEEECCcCCCCCHHH
Confidence 2111101 1112466899999876554443
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=0.76 Score=43.66 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=57.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|+|..|..+|..|.+. | .+++++|+.- .+ +...+..... ...+.......+ .+++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~----~~--~~~l~~~~~~-~~~~~~~~~~~~-~~~~ 61 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQ-----G-------HEVQGWLRVP----QP--YCSVNLVETD-GSIFNESLTAND-PDFL 61 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSC----CS--EEEEEEECTT-SCEEEEEEEESC-HHHH
T ss_pred eEEEECcCHHHHHHHHHHHhC-----C-------CCEEEEEcCc----cc--eeeEEEEcCC-CceeeeeeeecC-cccc
Confidence 799999999999999988753 4 2688888742 11 1111000000 000000001122 4667
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+. +|++| ++..+. -.+++++.++....+..+|..++|...
T Consensus 62 ~~--~d~vi-~~v~~~-~~~~v~~~l~~~l~~~~~vv~~~~g~~ 101 (291)
T 1ks9_A 62 AT--SDLLL-VTLKAW-QVSDAVKSLASTLPVTTPILLIHNGMG 101 (291)
T ss_dssp HT--CSEEE-ECSCGG-GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred CC--CCEEE-EEecHH-hHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 65 88877 333233 368999988654455677777899654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=4.9 Score=41.08 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=127.6
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------CCC----------
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GLS---------- 317 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~~---------- 317 (533)
...|+. .|+.--.+..|- .+-.--+.-+.|.|--- ..+|=-+++.+++..|-. |.-
T Consensus 81 ~~~~~Lk~I~~~~~G~d~i-d~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 159 (347)
T 1mx3_A 81 EKFKALRIIVRIGSGFDNI-DIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREV 159 (347)
T ss_dssp TTCSSCCEEEESSSCCTTB-CHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred hhCCCCCEEEEcccccCcc-cHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccccccccccc
Confidence 345776 888888777763 22222233477777533 345555788899888732 210
Q ss_pred ---CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCc
Q 009519 318 ---LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (533)
Q Consensus 318 ---l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~ 394 (533)
..+|...+|.|+|.|..|..+|+.+... |+ +++.+|++- .. .....+ ..
T Consensus 160 ~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~~----~~~~~~---g~----- 211 (347)
T 1mx3_A 160 ASGAARIRGETLGIIGLGRVGQAVALRAKAF-----GF-------NVLFYDPYL----SD----GVERAL---GL----- 211 (347)
T ss_dssp TTTCCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECTTS----CT----THHHHH---TC-----
T ss_pred ccCccCCCCCEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEECCCc----ch----hhHhhc---CC-----
Confidence 1355669999999999999999988653 44 688887531 11 111111 00
Q ss_pred cCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe--
Q 009519 395 REGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA-- 468 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A-- 468 (533)
....+|.|+++. .|+++=.- ...++++++.++.|. +..++.-.|+=..--|..-.+|.+ +|+.--|
T Consensus 212 ~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~~mk----~gailIN~arg~~vd~~aL~~aL~--~g~i~gA~l 283 (347)
T 1mx3_A 212 QRVSTLQDLLFH--SDCVTLHCGLNEHNHHLINDFTVKQMR----QGAFLVNTARGGLVDEKALAQALK--EGRIRGAAL 283 (347)
T ss_dssp EECSSHHHHHHH--CSEEEECCCCCTTCTTSBSHHHHTTSC----TTEEEEECSCTTSBCHHHHHHHHH--HTSEEEEEE
T ss_pred eecCCHHHHHhc--CCEEEEcCCCCHHHHHHhHHHHHhcCC----CCCEEEECCCChHHhHHHHHHHHH--hCCCcEEEE
Confidence 012469999987 89887432 224789999999883 577888888755533444445544 4543322
Q ss_pred ---cCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccC
Q 009519 469 ---SGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNC 527 (533)
Q Consensus 469 ---tGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~ 527 (533)
..-|+++ . +. .--..+|+.+-|=++-.. ....++|...+++-+.+...
T Consensus 284 DV~~~EP~~~---~-~~--~L~~~~nvi~tPHia~~t-----~~~~~~~~~~~~~ni~~~~~ 334 (347)
T 1mx3_A 284 DVHESEPFSF---S-QG--PLKDAPNLICTPHAAWYS-----EQASIEMREEAAREIRRAIT 334 (347)
T ss_dssp SCCSSSSCCT---T-SS--TTTTCSSEEECSSCTTCC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred eecccCCCCC---C-Cc--hHHhCCCEEEEchHHHHH-----HHHHHHHHHHHHHHHHHHHc
Confidence 2223221 0 11 112479999999876422 22224555555555554443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=87.87 E-value=0.95 Score=47.85 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=62.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|.+. |. +++++|+.- +.+...+..+. . .+.....++.|+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~-----G~-------~V~v~dr~~------~~~~~l~~~~~--~---~gi~~~~s~~e~ 62 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR-----GY-------TVAIYNRTT------SKTEEVFKEHQ--D---KNLVFTKTLEEF 62 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSH------HHHHHHHHHTT--T---SCEEECSSHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhC-----CC-------EEEEEcCCH------HHHHHHHHhCc--C---CCeEEeCCHHHH
Confidence 6899999999999999988753 43 577777631 11111111110 0 011123578888
Q ss_pred hccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.. ++|++| ++..++...+++++.+.....+..||.-+||-.+
T Consensus 63 v~~l~~aDvVi-lavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (474)
T 2iz1_A 63 VGSLEKPRRIM-LMVQAGAATDATIKSLLPLLDIGDILIDGGNTHF 107 (474)
T ss_dssp HHTBCSSCEEE-ECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred HhhccCCCEEE-EEccCchHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 8753 478877 4444455677888877543445668888998764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.69 E-value=0.59 Score=44.54 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=58.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..+... |. +.++++|++. +.+. .+++... .....++.|+
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~-----g~------~~v~~~~~~~------~~~~----~~~~~~g----~~~~~~~~~~ 65 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRK-----GF------RIVQVYSRTE------ESAR----ELAQKVE----AEYTTDLAEV 65 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSH------HHHH----HHHHHTT----CEEESCGGGS
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-----CC------eEEEEEeCCH------HHHH----HHHHHcC----CceeCCHHHH
Confidence 6999999999999999988754 43 2377787631 1111 1111100 0112456677
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
++. +|++|=+. .+.. .+++++.+.+...+..+|.-+||-.+.
T Consensus 66 ~~~--~Dvvi~av-~~~~-~~~v~~~l~~~~~~~~ivv~~s~~~~~ 107 (266)
T 3d1l_A 66 NPY--AKLYIVSL-KDSA-FAELLQGIVEGKREEALMVHTAGSIPM 107 (266)
T ss_dssp CSC--CSEEEECC-CHHH-HHHHHHHHHTTCCTTCEEEECCTTSCG
T ss_pred hcC--CCEEEEec-CHHH-HHHHHHHHHhhcCCCcEEEECCCCCch
Confidence 765 78877333 2333 388888875433366788888885553
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=87.65 E-value=1 Score=42.12 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=26.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||.|+|+|..|..+|..|.+. | .+++++|++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~-----g-------~~V~~~~~~ 51 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIA-----G-------HEVTYYGSK 51 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 38999999999999999988653 4 268888763
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=87.59 E-value=0.27 Score=54.54 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=30.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.||+|+|||..|..+|+.|+.+++ .+|.++|.+=
T Consensus 327 arVLIVGaGGLGs~vA~~La~aGV-----------G~ItLvD~D~ 360 (615)
T 4gsl_A 327 TKVLLLGAGTLGCYVSRALIAWGV-----------RKITFVDNGT 360 (615)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----------CEEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCC
Confidence 899999999999999999988755 6999999863
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=87.53 E-value=0.34 Score=48.61 Aligned_cols=125 Identities=23% Similarity=0.346 Sum_probs=74.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||+.|.++|..|... |+- ..+.++|.+-=..++. -++.+....|-.+. .. ....+ .++
T Consensus 2 kI~ViGaG~vG~~la~~l~~~-----~~~-----~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~-~i---~~t~d-~~a 66 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLN-----LDV-----DEIALVDIAEDLAVGEAMDLAHAAAGIDKYP-KI---VGGAD-YSL 66 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SCC-----SEEEEECSSHHHHHHHHHHHHHHHHTTTCCC-EE---EEESC-GGG
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CCC-----CeEEEEECChHHHHHHHHHHHhhhhhcCCCC-EE---EEeCC-HHH
Confidence 799999999999999887653 431 3799999742111100 01222111121111 01 11235 788
Q ss_pred hcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEEE
Q 009519 404 VRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai~ 467 (533)
+++ +|++|=+.+. +|- .-+++++.|.+ ++++-+|+-.|||.. +...-+++.+. -+-+|
T Consensus 67 ~~~--aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~-~~p~a~iivvsNPvd---~~t~~~~k~~g~p~~rvi 140 (294)
T 1oju_A 67 LKG--SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVE-NAPESKILVVTNPMD---VMTYIMWKESGKPRNEVF 140 (294)
T ss_dssp GTT--CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHT-TSTTCEEEECSSSHH---HHHHHHHHHSCCCTTSEE
T ss_pred hCC--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeCCcch---HHHHHHHHhcCCCHHHEe
Confidence 888 8987744333 342 12466677754 899999999999986 45566666542 24577
Q ss_pred ecC
Q 009519 468 ASG 470 (533)
Q Consensus 468 AtG 470 (533)
++|
T Consensus 141 G~g 143 (294)
T 1oju_A 141 GMG 143 (294)
T ss_dssp ECS
T ss_pred ecc
Confidence 776
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.53 E-value=0.58 Score=45.36 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|..+|..|... |. +++++|++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~ 33 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-----GC-------SVTIWNRS 33 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS
T ss_pred CEEEEEeecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 5899999999999999988764 42 67777763
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.46 E-value=0.47 Score=44.56 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=56.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEE-EeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL-LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~l-vD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|+|..|..+|..|.+. |. ++++ +|++ .+.+......+-- ....+..|
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~-----g~-------~V~~v~~r~------~~~~~~l~~~~g~--------~~~~~~~~ 77 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAA-----QI-------PAIIANSRG------PASLSSVTDRFGA--------SVKAVELK 77 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHT-----TC-------CEEEECTTC------GGGGHHHHHHHTT--------TEEECCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCC------HHHHHHHHHHhCC--------CcccChHH
Confidence 5899999999999999988753 43 4554 5442 1112221111110 01123456
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++. +|++| ++. +....+++++.++. .+..+|+.++||.+
T Consensus 78 ~~~~--aDvVi-lav-p~~~~~~v~~~l~~--~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 78 DALQ--ADVVI-LAV-PYDSIADIVTQVSD--WGGQIVVDASNAID 117 (220)
T ss_dssp HHTT--SSEEE-EES-CGGGHHHHHTTCSC--CTTCEEEECCCCBC
T ss_pred HHhc--CCEEE-EeC-ChHHHHHHHHHhhc--cCCCEEEEcCCCCC
Confidence 6766 88877 333 45566788887753 34569999999984
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=1.5 Score=44.88 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccc
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A 385 (533)
+.+++..... ... .++.|+|+|..|..++..+... .+. ++|+++|+. .+ ........|.
T Consensus 117 s~laa~~la~--~~~---~~v~iIGaG~~a~~~a~al~~~----~~~------~~V~V~~r~----~~--~a~~la~~~~ 175 (350)
T 1x7d_A 117 SLMAAQALAR--PNA---RKMALIGNGAQSEFQALAFHKH----LGI------EEIVAYDTD----PL--ATAKLIANLK 175 (350)
T ss_dssp HHHHHHHHSC--TTC---CEEEEECCSTTHHHHHHHHHHH----SCC------CEEEEECSS----HH--HHHHHHHHHT
T ss_pred HHHHHHHhcc--ccC---CeEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----HH--HHHHHHHHHH
Confidence 4455544432 345 7999999999999988776543 233 578888762 11 1122222221
Q ss_pred cccCCcCCccCCCCHHHHhcccCCcEEEEeccCC---CCCCHHHHHHhhhcCCCCCeEEecCC--CCCcccCCHHH
Q 009519 386 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAMSN--PTMNAECTAAD 456 (533)
Q Consensus 386 ~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~---g~Fteevv~~Ma~~~~erPIIFaLSN--Pt~~aE~tpe~ 456 (533)
... ... .....++.|+++. +|++|=++..+ -.|+.++ ..+.-.|+.++. |. +.|+.++-
T Consensus 176 ~~~-g~~-~~~~~~~~eav~~--aDiVi~aTps~~~~pvl~~~~-------l~~G~~V~~vgs~~p~-~~El~~~~ 239 (350)
T 1x7d_A 176 EYS-GLT-IRRASSVAEAVKG--VDIITTVTADKAYATIITPDM-------LEPGMHLNAVGGDCPG-KTELHADV 239 (350)
T ss_dssp TCT-TCE-EEECSSHHHHHTT--CSEEEECCCCSSEEEEECGGG-------CCTTCEEEECSCCBTT-BEEECHHH
T ss_pred hcc-Cce-EEEeCCHHHHHhc--CCEEEEeccCCCCCceecHHH-------cCCCCEEEECCCCCCC-ceeeCHHH
Confidence 100 000 0124679999987 89998666532 1344322 234558888886 66 56887753
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=87.38 E-value=0.58 Score=45.18 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=57.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|... |.. .+++++|++.- .+.. +.+.... . ....++.|+
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~-----g~~-----~~V~~~d~~~~------~~~~----~~~~g~~-~--~~~~~~~~~ 63 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRD-----HPH-----YKIVGYNRSDR------SRDI----ALERGIV-D--EATADFKVF 63 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CTT-----SEEEEECSSHH------HHHH----HHHTTSC-S--EEESCTTTT
T ss_pred ceEEEEeeCHHHHHHHHHHHhC-----CCC-----cEEEEEcCCHH------HHHH----HHHcCCc-c--cccCCHHHh
Confidence 6899999999999999988754 211 36888886310 0111 1110000 0 012356667
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhc-CCCCCeEEecCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNPT 447 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~-~~erPIIFaLSNPt 447 (533)
++. +|++| ++..+... +++++.+... ..+..||.-+||-.
T Consensus 64 ~~~--aDvVi-lavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~~ 104 (290)
T 3b1f_A 64 AAL--ADVII-LAVPIKKT-IDFIKILADLDLKEDVIITDAGSTK 104 (290)
T ss_dssp GGG--CSEEE-ECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSCH
T ss_pred hcC--CCEEE-EcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCCc
Confidence 766 78877 44333333 8888888643 34567777777743
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.93 Score=47.49 Aligned_cols=106 Identities=13% Similarity=0.276 Sum_probs=58.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChh-hhcCeEEEEeccC-------ccccCCC---CCChhhhccccccCCcC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA-FARNKFFLLDKDG-------LITKERK---NLDPAAAPFAKDPGDFM 392 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~-eA~~~i~lvD~~G-------Li~~~r~---~l~~~k~~~A~~~~~~~ 392 (533)
.||.|+|||+=|+++|..|.+-.. +.... +-.=++|..|..= .|...+. .|+..+.+ . .
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~---~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp----~-~-- 104 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCK---GYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLP----D-N-- 104 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHH---HCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCC----S-S--
T ss_pred CeEEEECcCHHHHHHHHHHHHcCC---CccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCC----C-C--
Confidence 599999999999999999988643 11100 0001466554320 0111221 12222211 0 0
Q ss_pred CccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 393 GLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 393 ~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..-..+|.|+++. .|++|= . +|-.|-+++++.+.....+..+|..++
T Consensus 105 -i~~t~dl~~al~~--ad~ii~-a-vPs~~~r~~l~~l~~~~~~~~~iv~~~ 151 (391)
T 4fgw_A 105 -LVANPDLIDSVKD--VDIIVF-N-IPHQFLPRICSQLKGHVDSHVRAISCL 151 (391)
T ss_dssp -EEEESCHHHHHTT--CSEEEE-C-SCGGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred -cEEeCCHHHHHhc--CCEEEE-E-CChhhhHHHHHHhccccCCCceeEEec
Confidence 1123579999988 777652 2 355688888888864333444444444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=0.73 Score=46.64 Aligned_cols=126 Identities=19% Similarity=0.248 Sum_probs=72.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+.|..++-+|+.. ++- ..++|+|.+-=-.++ ..+|.+. .+|..+.. -..+-.+
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~-----~~~-----~el~L~Di~~~~~~g~~~dl~~~-~~~~~~~~------i~~~~~~ 72 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ-----GIA-----QEIGIVDIFKDKTKGDAIDLSNA-LPFTSPKK------IYSAEYS 72 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSCHHHHHHHHHHHHTT-GGGSCCCE------EEECCGG
T ss_pred CEEEEECCCHHHHHHHHHHHcC-----CCC-----CEEEEEeCCchHhHHHHHHHHHH-HHhcCCeE------EEECCHH
Confidence 6999999999999988877442 331 589999973100000 0012111 12221110 0113467
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai 466 (533)
++++ +|++|=+.+.+ |- +-+++++.|.+ +++..+|+-.|||.. ...+-+++.+ .-.-+
T Consensus 73 a~~~--aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~tNPv~---~~t~~~~k~s~~p~~rv 146 (326)
T 2zqz_A 73 DAKD--ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD-SGFNGIFLVAANPVD---ILTYATWKLSGFPKNRV 146 (326)
T ss_dssp GGGG--CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHH-HTCCSEEEECSSSHH---HHHHHHHHHHCCCGGGE
T ss_pred HhCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCcHH---HHHHHHHHHcCCCHHHE
Confidence 7888 89988544433 31 22456666643 789999999999996 4455555543 11246
Q ss_pred EecCCC
Q 009519 467 FASGSP 472 (533)
Q Consensus 467 ~AtGSP 472 (533)
|.+|.-
T Consensus 147 iG~gt~ 152 (326)
T 2zqz_A 147 VGSGTS 152 (326)
T ss_dssp EECTTH
T ss_pred EEcccc
Confidence 677643
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=1 Score=47.70 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=62.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccc-ccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-DPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~-~~~~~~~~~~~~~L~e 402 (533)
.||.|+|+|..|..+|..|.+. |. +++++|+.. +.+. .+.+ .... .+.....++.|
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~-----G~-------~V~v~dr~~------~~~~----~l~~~~~~g-~gi~~~~~~~e 59 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH-----GF-------VVCAFNRTV------SKVD----DFLANEAKG-TKVLGAHSLEE 59 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSST------HHHH----HHHHTTTTT-SSCEECSSHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHC-----CC-------eEEEEeCCH------HHHH----HHHhccccC-CCeEEeCCHHH
Confidence 5899999999999999988753 43 578887631 1111 1111 0000 01112357888
Q ss_pred Hhccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++.+ ++|++| ++..++...+++++.+.....+..||.-+||-.+
T Consensus 60 ~v~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~ 105 (482)
T 2pgd_A 60 MVSKLKKPRRII-LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY 105 (482)
T ss_dssp HHHHBCSSCEEE-ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred HHhhccCCCEEE-EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 88622 488877 4443455677888877543445668888998765
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.32 Score=49.48 Aligned_cols=125 Identities=16% Similarity=0.242 Sum_probs=71.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|.++|..|.. .|+. .+.++|.+-=..++- .+|.+.. .+....... ....+. +
T Consensus 8 ~kI~viGaG~vG~~~a~~l~~-----~~~~------~v~L~Di~~~~~~g~~~dl~~~~-~~~~~~~~v---~~t~d~-~ 71 (324)
T 3gvi_A 8 NKIALIGSGMIGGTLAHLAGL-----KELG------DVVLFDIAEGTPQGKGLDIAESS-PVDGFDAKF---TGANDY-A 71 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTCC------EEEEECSSSSHHHHHHHHHHHHH-HHHTCCCCE---EEESSG-G
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCchhHHHHHHHHhchh-hhcCCCCEE---EEeCCH-H
Confidence 799999999999999988765 3541 599999742111000 0122111 122111111 011344 7
Q ss_pred HhcccCCcEEEEecc---CCCC-----C------CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEE
Q 009519 403 VVRKVKPHVLLGLSG---VGGV-----F------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~---~~g~-----F------teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai 466 (533)
++++ +|++|=+.+ .+|. | -+++++.|.+ +++.-+|+-.|||.. +...-+++.+. -+-+
T Consensus 72 a~~~--aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~-~~p~a~iivvtNPvd---~~t~~~~k~sg~p~~rv 145 (324)
T 3gvi_A 72 AIEG--ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKK-YAPEAFVICITNPLD---AMVWALQKFSGLPAHKV 145 (324)
T ss_dssp GGTT--CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHH-HCTTCEEEECCSSHH---HHHHHHHHHHCCCGGGE
T ss_pred HHCC--CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHH-HCCCeEEEecCCCcH---HHHHHHHHhcCCCHHHE
Confidence 8888 898774433 3342 1 2456667754 788899999999985 33444555441 1347
Q ss_pred EecC
Q 009519 467 FASG 470 (533)
Q Consensus 467 ~AtG 470 (533)
|++|
T Consensus 146 iG~~ 149 (324)
T 3gvi_A 146 VGMA 149 (324)
T ss_dssp EECC
T ss_pred Eeec
Confidence 7777
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.90 E-value=0.83 Score=46.02 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=72.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+.|..++-+|+.. ++- ..|+|+|.+-=-.++ ..+|.+.. +|..+.. -..+..+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~-----~~~-----~el~L~Di~~~~~~g~~~dl~~~~-~~~~~~~------v~~~~~~ 68 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ-----GIA-----EEFVIVDVVKDRTKGDALDLEDAQ-AFTAPKK------IYSGEYS 68 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHHHHHHHHHHGGG-GGSCCCE------EEECCGG
T ss_pred CEEEEECCCHHHHHHHHHHHcC-----CCC-----CEEEEEeCCchHHHHHHHHHHHHH-HhcCCeE------EEECCHH
Confidence 5999999999999988876543 431 579999973100000 00121111 2321110 0113467
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai 466 (533)
++++ +|++|=+.+.+ |- +-+++++.|.+ +++..+|+-.|||.. ...+-+++.+ .-+-+
T Consensus 69 a~~~--aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~tNPv~---~~t~~~~k~s~~p~~rv 142 (318)
T 1ez4_A 69 DCKD--ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD-SGFDGIFLVAANPVD---ILTYATWKFSGFPKERV 142 (318)
T ss_dssp GGTT--CSEEEECCCC----------CHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHH---HHHHHHHHHHCCCGGGE
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCcHH---HHHHHHHHHcCCCHHHE
Confidence 7877 89988444333 31 23456666654 789999999999996 4455565643 11246
Q ss_pred EecCCCC
Q 009519 467 FASGSPF 473 (533)
Q Consensus 467 ~AtGSPf 473 (533)
|.+|.-.
T Consensus 143 iG~gt~L 149 (318)
T 1ez4_A 143 IGSGTSL 149 (318)
T ss_dssp EECTTHH
T ss_pred Eeccccc
Confidence 7776533
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.83 E-value=2.2 Score=42.74 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=70.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC---CcCCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG---DFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~---~~~~~~~~~~L 400 (533)
.||.|+|||+.|...|-+|+. .|+- ..++++|.+ .++ +......+.+... +.. -...+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~-----~~~~-----~ev~L~Di~----~~~--~~g~~~dl~~~~~~~~~~~--i~~~~- 68 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMAL-----RQTA-----NELVLIDVF----KEK--AIGEAMDINHGLPFMGQMS--LYAGD- 68 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTCS-----SEEEEECCC---------CCHHHHHHTTSCCCTTCEE--EC--C-
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCC----hHH--HHHHHHHHHHhHHhcCCeE--EEECC-
Confidence 689999999999998887654 3431 479999975 222 2221122222110 000 01123
Q ss_pred HHHhcccCCcEEEEeccCC---CC-------C----CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCc
Q 009519 401 LEVVRKVKPHVLLGLSGVG---GV-------F----NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GEN 464 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g~-------F----teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Gr 464 (533)
.+++++ +|++|=+.+.+ |- . -+++++.|.+ +++.-+|+-.|||.. .+.+-+++.+ .-.
T Consensus 69 ~~a~~~--aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~viv~tNPv~---~~~~~~~k~s~~p~~ 142 (318)
T 1y6j_A 69 YSDVKD--CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMK-YYNHGVILVVSNPVD---IITYMIQKWSGLPVG 142 (318)
T ss_dssp GGGGTT--CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHH-HCCSCEEEECSSSHH---HHHHHHHHHHTCCTT
T ss_pred HHHhCC--CCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHH-hCCCcEEEEecCcHH---HHHHHHHHHcCCCHH
Confidence 566777 89988444333 32 1 2678888864 688899998999985 4445555543 112
Q ss_pred EEEecCC
Q 009519 465 IVFASGS 471 (533)
Q Consensus 465 ai~AtGS 471 (533)
-+|.+|.
T Consensus 143 rviG~gt 149 (318)
T 1y6j_A 143 KVIGSGT 149 (318)
T ss_dssp TEEECTT
T ss_pred HEeccCC
Confidence 4667654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.80 E-value=0.31 Score=46.92 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=55.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|.+. | .+++++|++.--. +.+.....................+..|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 68 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG-----G-------NDVTLIDQWPAHI---EAIRKNGLIADFNGEEVVANLPIFSPEEI 68 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSCHHHH---HHHHHHCEEEEETTEEEEECCCEECGGGC
T ss_pred CeEEEECcCHHHHHHHHHHHhC-----C-------CcEEEEECCHHHH---HHHHhCCEEEEeCCCeeEecceeecchhh
Confidence 4899999999999999888653 4 2688888742100 00100000000000000000000112222
Q ss_pred hccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+.+ ++|++| ++. +.-..+++++.+++...+..+|..++|...
T Consensus 69 ~~~~~~~d~vi-~~v-~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~ 112 (316)
T 2ew2_A 69 DHQNEQVDLII-ALT-KAQQLDAMFKAIQPMITEKTYVLCLLNGLG 112 (316)
T ss_dssp CTTSCCCSEEE-ECS-CHHHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred cccCCCCCEEE-EEe-ccccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 2211 378776 333 223468888888654556778888998664
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=86.77 E-value=1.5 Score=46.96 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=65.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.+|.|+|+|..|.++|..|.+. |. +++++|+.- +.-..+++....-.......++.|+
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~-----G~-------~V~v~dr~~----------~~~~~l~~~g~~g~~i~~~~s~~e~ 62 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDH-----GF-------VVCAFNRTV----------SKVDDFLANEAKGTKVVGAQSLKEM 62 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSST----------HHHHHHHHTTTTTSSCEECSSHHHH
T ss_pred CEEEEEChhHHHHHHHHHHHHC-----CC-------EEEEEeCCH----------HHHHHHHhcccCCCceeccCCHHHH
Confidence 6899999999999999988764 53 577777631 1111122110000000113679999
Q ss_pred hccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.+ +||++| ++..++...+++++.+.....+..||.-.||-.+
T Consensus 63 v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~ 107 (484)
T 4gwg_A 63 VSKLKKPRRII-LLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEY 107 (484)
T ss_dssp HHTBCSSCEEE-ECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred HhhccCCCEEE-EecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCc
Confidence 8753 488776 4433455778888888665667889999998664
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=86.73 E-value=0.29 Score=47.48 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=29.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.||+|+|+|..|..+|+.|+.+++ ++|.++|.+-
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv-----------~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGV-----------GNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-----------SEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCC-----------CeEEEEcCCC
Confidence 899999999999999999987644 6899999874
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=86.70 E-value=0.45 Score=47.45 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=59.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChh--hhccccccCCcCCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA--AAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~--k~~~A~~~~~~~~~~~~~~L 400 (533)
.||.|+|+|+.|..+|..|.+. | .++.++|+.--+..-+ ..+... ...+... . ....++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~---~---~~~~~~ 65 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA-----G-------EAINVLARGATLQALQTAGLRLTEDGATHTLP---V---RATHDA 65 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT-----T-------CCEEEECCHHHHHHHHHTCEEEEETTEEEEEC---C---EEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEEChHHHHHHHHCCCEEecCCCeEEEe---e---eEECCH
Confidence 6899999999999999988764 4 2688888631110000 001000 0000000 0 012456
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.+ ++. +|++| ++. +.-..+++++.++....+..+|..++|..
T Consensus 66 ~~-~~~--~D~Vi-lav-k~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 66 AA-LGE--QDVVI-VAV-KAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp HH-HCC--CSEEE-ECC-CHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred HH-cCC--CCEEE-EeC-CchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 66 454 78877 443 33467788888865455678999999995
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.62 E-value=0.87 Score=44.97 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..|... |. +++++|++
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~-----G~-------~V~~~dr~ 53 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKN-----GF-------KVTVWNRT 53 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999998764 43 67888773
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=86.39 E-value=0.28 Score=47.71 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=29.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 29 ~~VlvvG~GglG~~va~~La~~-----Gv------g~i~lvD~d 61 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGA-----GV------GTLVLADDD 61 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC------SEEEEECCC
T ss_pred CcEEEEccCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 8999999999999999999876 44 689999987
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=86.00 E-value=0.66 Score=45.82 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|+..+++..|.. .. .+++|+|||.+|.+++..|.+. |. ++|+++++
T Consensus 105 ~G~~~~l~~~~~~-~~---~~vlvlGaGgaarav~~~L~~~-----G~------~~i~v~nR 151 (271)
T 1npy_A 105 IAIVKLIEKYHLN-KN---AKVIVHGSGGMAKAVVAAFKNS-----GF------EKLKIYAR 151 (271)
T ss_dssp HHHHHHHHHTTCC-TT---SCEEEECSSTTHHHHHHHHHHT-----TC------CCEEEECS
T ss_pred HHHHHHHHHhCCC-CC---CEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEeC
Confidence 4566666665543 44 7999999999999998887653 44 57998877
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=1.2 Score=44.65 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=56.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH-
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE- 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e- 402 (533)
.||.|+|+|..|..+|..|... |.. .+|+++|++- .+...++...... ....++.|
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-----G~~-----~~V~~~dr~~-----------~~~~~a~~~G~~~--~~~~~~~~~ 90 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-----GFK-----GKIYGYDINP-----------ESISKAVDLGIID--EGTTSIAKV 90 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-----TCC-----SEEEEECSCH-----------HHHHHHHHTTSCS--EEESCTTGG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-----CCC-----CEEEEEECCH-----------HHHHHHHHCCCcc--hhcCCHHHH
Confidence 6999999999999999988753 542 3788888731 1111111100000 01245667
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+++. +|++| ++..+. -.+++++.++....+..||.-.+
T Consensus 91 ~~~~--aDvVi-lavp~~-~~~~vl~~l~~~l~~~~iv~d~~ 128 (314)
T 3ggo_A 91 EDFS--PDFVM-LSSPVR-TFREIAKKLSYILSEDATVTDQG 128 (314)
T ss_dssp GGGC--CSEEE-ECSCGG-GHHHHHHHHHHHSCTTCEEEECC
T ss_pred hhcc--CCEEE-EeCCHH-HHHHHHHHHhhccCCCcEEEECC
Confidence 7776 78877 444333 45677777754345666776555
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=85.86 E-value=0.32 Score=53.71 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|++ .||+|+|||..|..+|+.|+.+++ ++|.++|.+
T Consensus 324 kL~~---~kVLIVGaGGLGs~va~~La~aGV-----------G~ItLvD~D 360 (598)
T 3vh1_A 324 IIKN---TKVLLLGAGTLGCYVSRALIAWGV-----------RKITFVDNG 360 (598)
T ss_dssp HHHT---CEEEEECCSHHHHHHHHHHHTTTC-----------CEEEEECCS
T ss_pred HHhC---CeEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 4455 999999999999999999987654 699999976
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=85.77 E-value=0.83 Score=45.47 Aligned_cols=124 Identities=17% Similarity=0.213 Sum_probs=72.8
Q ss_pred eEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec--cCccccC-CCCCChhhhccccccCCcCCccCCCCH
Q 009519 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK--DGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~--~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
||+|.| ||..|..++..|+. .|+- ..++|+|. +-=-.++ ..+|.+... +..+. .. ...+
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~-----~~~~-----~el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~-~v----~~~~- 64 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIAL-----RDIA-----DEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNT-RV----RQGG- 64 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TTCC-----SEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCC-EE----EECC-
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCCC-----CEEEEEcCCCChhhHHHHHHHHHHHHh-hCCCc-EE----EeCC-
Confidence 899999 99999998887654 2432 46999997 2100000 011221111 11110 00 0123
Q ss_pred HHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCc
Q 009519 401 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GEN 464 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Gr 464 (533)
.+++++ +|++|=+.+.+ |. .++++++.|.+ ++.+.+|+--|||.. ...+-+++.+ .-+
T Consensus 65 ~~a~~~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~~p~~~viv~SNPv~---~~~~~~~~~~~~p~~ 138 (303)
T 1o6z_A 65 YEDTAG--SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDE-HNDDYISLTTSNPVD---LLNRHLYEAGDRSRE 138 (303)
T ss_dssp GGGGTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHT-TCSCCEEEECCSSHH---HHHHHHHHHSSSCGG
T ss_pred HHHhCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCcEEEEeCChHH---HHHHHHHHHcCCCHH
Confidence 667877 89988555433 32 46778888854 788999999999985 4445555543 112
Q ss_pred EEEecCC
Q 009519 465 IVFASGS 471 (533)
Q Consensus 465 ai~AtGS 471 (533)
-+|++|.
T Consensus 139 rviG~gt 145 (303)
T 1o6z_A 139 QVIGFGG 145 (303)
T ss_dssp GEEECCH
T ss_pred Heeeccc
Confidence 4777764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.72 E-value=0.73 Score=46.07 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=67.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||+.|.++|..|... |.. ..++++|.+-=-... ..++.+. .++.... .. ...+ .++
T Consensus 2 kI~VIGaG~~G~~la~~l~~~-----g~~-----~~V~l~D~~~~~~~~~~~~l~~~-~~~~~~~-~i----~~~d-~~~ 64 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK-----GFA-----REMVLIDVDKKRAEGDALDLIHG-TPFTRRA-NI----YAGD-YAD 64 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHHHHHHHHHHHH-GGGSCCC-EE----EECC-GGG
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CCC-----CeEEEEeCChHHHHHHHHHHHhh-hhhcCCc-EE----EeCC-HHH
Confidence 799999999999999887653 431 379999974100000 0001000 0111000 00 0123 356
Q ss_pred hcccCCcEEEEeccCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEEE
Q 009519 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai~ 467 (533)
++. +|++|=+-..+.. .-+++++.|.+ +++.-+|+-.|||... ..+-+.+.+ ...-+|
T Consensus 65 ~~~--aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~~~~~ii~~tNp~~~---~~~~~~~~~~~~~~rvi 138 (319)
T 1a5z_A 65 LKG--SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSK-YAPDSIVIVVTNPVDV---LTYFFLKESGMDPRKVF 138 (319)
T ss_dssp GTT--CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSSHHH---HHHHHHHHHTCCTTTEE
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeCCcHHH---HHHHHHHHhCCChhhEE
Confidence 666 8887743332221 12688888864 5777788889999973 223333443 223455
Q ss_pred ecCC
Q 009519 468 ASGS 471 (533)
Q Consensus 468 AtGS 471 (533)
.+|.
T Consensus 139 G~~t 142 (319)
T 1a5z_A 139 GSGT 142 (319)
T ss_dssp ECTT
T ss_pred eeCc
Confidence 6553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=85.64 E-value=6 Score=40.53 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=114.2
Q ss_pred cCceeccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCchhHHHHHHHHHHHHH
Q 009519 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAA 346 (533)
Q Consensus 288 ~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~ 346 (533)
-+++.|--- +.+|=-+++-+++..|-. |. .-.+|...+|.|+|.|..|..+|+.+...
T Consensus 117 gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~- 195 (345)
T 4g2n_A 117 GIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGF- 195 (345)
T ss_dssp TCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTT-
T ss_pred CEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHC-
Confidence 366666432 335556788888877642 10 01345559999999999999999998754
Q ss_pred HHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEecc----CCCCC
Q 009519 347 ARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVF 422 (533)
Q Consensus 347 ~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~F 422 (533)
|+ +++.+|+... +... +.. . ....+|.|+++. .|+++=.-- ..+.|
T Consensus 196 ----G~-------~V~~~dr~~~--------~~~~---~~g-~-----~~~~~l~ell~~--sDvV~l~~Plt~~T~~li 245 (345)
T 4g2n_A 196 ----GL-------AIHYHNRTRL--------SHAL---EEG-A-----IYHDTLDSLLGA--SDIFLIAAPGRPELKGFL 245 (345)
T ss_dssp ----TC-------EEEEECSSCC--------CHHH---HTT-C-----EECSSHHHHHHT--CSEEEECSCCCGGGTTCB
T ss_pred ----CC-------EEEEECCCCc--------chhh---hcC-C-----eEeCCHHHHHhh--CCEEEEecCCCHHHHHHh
Confidence 43 6888887421 1111 111 0 012479999988 899874321 23889
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCC-CcceecCCCeeeecccccceeechhhhHH
Q 009519 423 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENVDLGNGKIGHVNQANNMYLFPGIGLG 501 (533)
Q Consensus 423 teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSP-f~pv~~~~G~~~~p~Q~NN~~iFPGiglG 501 (533)
+++.++.|. +..|+.=.|.-..--|-.-.+|++ +|+. .+.|-. |++-. + ....--+..|+.+-|=+|-.
T Consensus 246 ~~~~l~~mk----~gailIN~aRG~~vde~aL~~aL~--~g~i-~gA~LDVf~~EP-~--~~~pL~~~~nvilTPHia~~ 315 (345)
T 4g2n_A 246 DHDRIAKIP----EGAVVINISRGDLINDDALIEALR--SKHL-FAAGLDVFANEP-A--IDPRYRSLDNIFLTPHIGSA 315 (345)
T ss_dssp CHHHHHHSC----TTEEEEECSCGGGBCHHHHHHHHH--HTSE-EEEEESCCTTTT-S--CCTTGGGCTTEEECCSCTTC
T ss_pred CHHHHhhCC----CCcEEEECCCCchhCHHHHHHHHH--hCCc-eEEEecCCCCCC-C--CCchHHhCCCEEEcCccCcC
Confidence 999999993 678888888654422333344444 5653 332211 11100 0 11122346789999987643
Q ss_pred HHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 502 TLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 502 ~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
...+ -..|...+++.|.+....++
T Consensus 316 t~e~-----~~~~~~~~~~ni~~~l~g~~ 339 (345)
T 4g2n_A 316 THET-----RDAMGWLLIQGIEALNQSDV 339 (345)
T ss_dssp BHHH-----HHHHHHHHHHHHHHHHTTCC
T ss_pred CHHH-----HHHHHHHHHHHHHHHHcCCC
Confidence 2221 24566666666666555443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=85.62 E-value=0.57 Score=46.26 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=59.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+-|..+|..|.+. | .+++++|+.-+ ..=+ ..+.- ......-.+....-..++.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g-------~~V~~~~r~~~-~~i~~~g~~~---~~~~g~~~~~~~~~~~~~~~ 66 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS-----G-------EDVHFLLRRDY-EAIAGNGLKV---FSINGDFTLPHVKGYRAPEE 66 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT-----S-------CCEEEECSTTH-HHHHHTCEEE---EETTCCEEESCCCEESCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEEcCcH-HHHHhCCCEE---EcCCCeEEEeeceeecCHHH
Confidence 5899999999999999888653 4 26888887531 0000 01100 00000000000001234544
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++. +|++| ++. +--..+++++.++....+..+|..+.|-..
T Consensus 67 -~~~--~D~vi-lav-k~~~~~~~l~~l~~~l~~~~~iv~l~nGi~ 107 (312)
T 3hn2_A 67 -IGP--MDLVL-VGL-KTFANSRYEELIRPLVEEGTQILTLQNGLG 107 (312)
T ss_dssp -HCC--CSEEE-ECC-CGGGGGGHHHHHGGGCCTTCEEEECCSSSS
T ss_pred -cCC--CCEEE-Eec-CCCCcHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 554 78877 554 344567899999765667788888999875
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.55 E-value=1 Score=47.79 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=62.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccc-ccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-DPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~-~~~~~~~~~~~~~L~e 402 (533)
-||.|+|+|..|..+|..|.+. |. +++++|+..- .+......+-. +... +.....++.|
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~-----G~-------~V~v~dr~~~------~~~~l~~~~g~~~~~~--~i~~~~~~~e 61 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK-----GF-------KVAVFNRTYS------KSEEFMKANASAPFAG--NLKAFETMEA 61 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSHH------HHHHHHHHTTTSTTGG--GEEECSCHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHC-----CC-------EEEEEeCCHH------HHHHHHHhcCCCCCCC--CeEEECCHHH
Confidence 3799999999999999988753 43 5788876311 01111100000 0000 0012357888
Q ss_pred Hhccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++.. ++|++| ++..++...+++++.+.....+..||..+||-.+
T Consensus 62 ~v~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~ 107 (478)
T 1pgj_A 62 FAASLKKPRKAL-ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHF 107 (478)
T ss_dssp HHHHBCSSCEEE-ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred HHhcccCCCEEE-EecCChHHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence 88743 488877 4443455677888777543455678888998764
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=85.35 E-value=0.45 Score=48.72 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=30.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.||+|+|+|..|..+|+.|+.+++ .+|.++|.+=
T Consensus 119 ~~VlvvG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 152 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATSGI-----------GEIILIDNDQ 152 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-----------SEEEEEECCB
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-----------CeEEEECCCc
Confidence 899999999999999999998755 6899999863
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=85.33 E-value=0.31 Score=51.74 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=63.8
Q ss_pred HhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhcc-Ccee--ccCcchhHHHHHHHHHHHHHHhCC-----CCCCC
Q 009519 250 SIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FCMF--NDDIQGTAGVALAGLLGTVRAQGL-----SLTDF 321 (533)
Q Consensus 250 ~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~-~~~F--nDDiQGTaaV~LAgli~Alr~~g~-----~l~dl 321 (533)
..+..+++.+...+|++ .|+-+......++-++|.-+ +|++ |+..-+.+.....-|...+..... ++.+-
T Consensus 133 ~~~~~~l~~~a~~~~~v--~~~~vd~~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~ 210 (521)
T 1hyu_A 133 PDVVQALNLMAVLNPRI--KHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKR 210 (521)
T ss_dssp HHHHHHHHHHHHHCTTE--EEEEEETTTCHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTS
T ss_pred HHHHHHHHHHHhHcCce--EEEEEechhhHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhhccccccccccccc
Confidence 34556666666677854 34333334556788888654 6644 666667777666667665533210 01111
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
...+|+|+|||.||+..|..+.+ .|+ ++.++|+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~-----~G~-------~v~lie~ 243 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSAR-----KGI-------RTGLMGE 243 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHh-----CCC-------eEEEEEC
Confidence 12689999999999999988765 354 5777775
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=85.29 E-value=0.96 Score=43.70 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=51.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|... |. +++++|++. +....+++.. .....++.|+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~-----g~-------~V~~~~~~~----------~~~~~~~~~g-----~~~~~~~~~~ 57 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE-----GV-------TVYAFDLME----------ANVAAVVAQG-----AQACENNQKV 57 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT-----TC-------EEEEECSSH----------HHHHHHHTTT-----CEECSSHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------eEEEEeCCH----------HHHHHHHHCC-----CeecCCHHHH
Confidence 6899999999999999988653 43 577887631 1111111110 0112457777
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHH---HhhhcCCCCCeEEecCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLK---AMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~---~Ma~~~~erPIIFaLSNPt 447 (533)
++. +|++|=+. ....-.++++. .+.+...+..+|..+||-.
T Consensus 58 ~~~--~D~vi~~v-p~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 58 AAA--SDIIFTSL-PNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp HHH--CSEEEECC-SSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred HhC--CCEEEEEC-CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 765 67766322 11222344442 2222233455677777655
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=85.18 E-value=0.8 Score=44.39 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..|.+. |. +++++|++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~ 33 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRA-----GF-------DVTVWNRN 33 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHH-----TC-------CEEEECSS
T ss_pred CeEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 3799999999999999998865 42 57777763
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.16 E-value=8 Score=39.30 Aligned_cols=218 Identities=15% Similarity=0.096 Sum_probs=121.1
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCcc---hhHHHHHHHHHHHHHHh---------CC------CCCCCC
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------GL------SLTDFA 322 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g~------~l~dl~ 322 (533)
..|+. .|+.--.+..|- .+..--+.-++|.|---- .+|=-+++.+++..|-. |. .-.+|.
T Consensus 86 ~~~~Lk~I~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~ 164 (335)
T 2g76_A 86 AAEKLQVVGRAGTGVDNV-DLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELN 164 (335)
T ss_dssp HCSSCCEEEESSSSCTTB-CHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCT
T ss_pred hCCCCcEEEECCCCcchh-ChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCC
Confidence 46776 777666655552 222222335888886432 34455788888887742 10 012344
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..+|.|+|.|..|..+|+.+... |+ +++.+|+.. +.. .+.... ....+|.|
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d~~~---------~~~---~~~~~g-----~~~~~l~e 215 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSF-----GM-------KTIGYDPII---------SPE---VSASFG-----VQQLPLEE 215 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECSSS---------CHH---HHHHTT-----CEECCHHH
T ss_pred cCEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEECCCc---------chh---hhhhcC-----ceeCCHHH
Confidence 49999999999999999988643 43 688887631 111 111100 01247999
Q ss_pred HhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe-----cCCCC
Q 009519 403 VVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA-----SGSPF 473 (533)
Q Consensus 403 ~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A-----tGSPf 473 (533)
+++. .|+++=.- ...+.|+++.++.|. +..++.=.|.-..--|..-.+|.+ +|+.--| .+-|.
T Consensus 216 ll~~--aDvV~l~~P~t~~t~~li~~~~l~~mk----~gailIN~arg~vvd~~aL~~aL~--~g~i~gA~lDV~~~EP~ 287 (335)
T 2g76_A 216 IWPL--CDFITVHTPLLPSTTGLLNDNTFAQCK----KGVRVVNCARGGIVDEGALLRALQ--SGQCAGAALDVFTEEPP 287 (335)
T ss_dssp HGGG--CSEEEECCCCCTTTTTSBCHHHHTTSC----TTEEEEECSCTTSBCHHHHHHHHH--HTSEEEEEESCCSSSSC
T ss_pred HHhc--CCEEEEecCCCHHHHHhhCHHHHhhCC----CCcEEEECCCccccCHHHHHHHHH--hCCccEEEEeecCCCCC
Confidence 9987 89988442 124788899999883 577888888744322222233433 4443211 12221
Q ss_pred cceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
. . ..--+..|+.+-|=++-.... -...|...+++.|.+....++
T Consensus 288 -----~-~--~~L~~~~nvilTPH~~~~t~e-----~~~~~~~~~~~nl~~~~~g~~ 331 (335)
T 2g76_A 288 -----R-D--RALVDHENVISCPHLGASTKE-----AQSRCGEEIAVQFVDMVKGKS 331 (335)
T ss_dssp -----S-C--CHHHHSTTEEECSSCTTCBHH-----HHHHHHHHHHHHHHHHC----
T ss_pred -----C-C--chHHhCCCEEECCcCCCCCHH-----HHHHHHHHHHHHHHHHHcCCC
Confidence 0 0 111246789999977632111 124456666666666554443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=85.02 E-value=3.7 Score=41.03 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=97.6
Q ss_pred CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCC
Q 009519 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.+|...+|.|+|.|..|..+|+.+... |+ +++.+|+..- . ... ++ ...
T Consensus 118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~dr~~~----~--~~~-----~~---------~~~ 165 (290)
T 3gvx_A 118 TLLYGKALGILGYGGIGRRVAHLAKAF-----GM-------RVIAYTRSSV----D--QNV-----DV---------ISE 165 (290)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSSCC----C--TTC-----SE---------ECS
T ss_pred eeeecchheeeccCchhHHHHHHHHhh-----Cc-------EEEEEecccc----c--ccc-----cc---------ccC
Confidence 445559999999999999999998765 43 7888887421 1 110 11 124
Q ss_pred CHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCc
Q 009519 399 SLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~ 474 (533)
+|.|+++. .|+++=.- ...+.++++.++.|. +..+|.=.|.-..--|-.-.+|++ +|+.-.|.=--|+
T Consensus 166 ~l~ell~~--aDiV~l~~P~t~~t~~li~~~~l~~mk----~gailIN~aRG~~vd~~aL~~aL~--~g~i~ga~lDV~~ 237 (290)
T 3gvx_A 166 SPADLFRQ--SDFVLIAIPLTDKTRGMVNSRLLANAR----KNLTIVNVARADVVSKPDMIGFLK--ERSDVWYLSDVWW 237 (290)
T ss_dssp SHHHHHHH--CSEEEECCCCCTTTTTCBSHHHHTTCC----TTCEEEECSCGGGBCHHHHHHHHH--HCTTCEEEESCCT
T ss_pred ChHHHhhc--cCeEEEEeeccccchhhhhHHHHhhhh----cCceEEEeehhcccCCcchhhhhh--hccceEEeecccc
Confidence 79999988 89887332 124789999999993 678888888754432333344444 3443322111111
Q ss_pred ceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccC
Q 009519 475 NVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNC 527 (533)
Q Consensus 475 pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~ 527 (533)
+ + + . ..--+..|+.+-|=++=| ....-.+.|...+++-|.+...
T Consensus 238 ~-E-P-~--~pL~~~~nvilTPHiag~----~t~e~~~~~~~~~~~ni~~~~~ 281 (290)
T 3gvx_A 238 N-E-P-E--ITETNLRNAILSPHVAGG----MSGEIMDIAIQLAFENVRNFFE 281 (290)
T ss_dssp T-T-T-S--CCSCCCSSEEECCSCSSC----BTTBCCHHHHHHHHHHHHHHTC
T ss_pred C-C-c-c--cchhhhhhhhcCccccCC----ccchHHHHHHHHHHHHHHhhhc
Confidence 0 0 0 0 122356789999987611 2234457788778877766544
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=84.89 E-value=0.87 Score=44.61 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 303 ~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
...|++.+++..+.+++. .+++|.|||.+|.++|..|.+ .| +++++|++
T Consensus 111 d~~G~~~~L~~~~~~l~~---k~vlV~GaGgiG~aia~~L~~-----~G--------~V~v~~r~ 159 (287)
T 1nvt_A 111 DGIGARMALEEEIGRVKD---KNIVIYGAGGAARAVAFELAK-----DN--------NIIIANRT 159 (287)
T ss_dssp HHHHHHHHHHHHHCCCCS---CEEEEECCSHHHHHHHHHHTS-----SS--------EEEEECSS
T ss_pred CHHHHHHHHHHhCCCcCC---CEEEEECchHHHHHHHHHHHH-----CC--------CEEEEECC
Confidence 678899999988887777 999999998666666666543 23 58888774
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=84.77 E-value=0.94 Score=44.99 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.||.|+|+|..|.++|..|... |. +++++|+
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~-----G~-------~V~~~dr 62 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEA-----GY-------ALQVWNR 62 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHT-----TC-------EEEEECS
T ss_pred CEEEEECccHHHHHHHHHHHhC-----CC-------eEEEEcC
Confidence 6999999999999999998764 43 5777776
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=84.62 E-value=0.26 Score=50.53 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=74.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|.++|..++.. |+- ..+.++|.+-=..++. .+|.+. ..|..... . ....++++
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~-----g~~-----~ev~L~Di~~~~~~g~a~DL~~~-~~~~~~~~-i---~~t~d~~~ 86 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMK-----DLA-----DEVALVDVMEDKLKGEMMDLEHG-SLFLHTAK-I---VSGKDYSV 86 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHH-----CCC-----SEEEEECSCHHHHHHHHHHHHHH-GGGSCCSE-E---EEESSSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCC-----CeEEEEECCHHHHHHHHHHhhhh-hhcccCCe-E---EEcCCHHH
Confidence 6999999999999999988763 442 3799999731000000 122221 12322110 0 01234444
Q ss_pred HhcccCCcEEE---EeccCCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC---cE
Q 009519 403 VVRKVKPHVLL---GLSGVGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE---NI 465 (533)
Q Consensus 403 ~V~~vkptvLI---G~S~~~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G---ra 465 (533)
+++ +|++| |+...+|- .-+++++.+.+ +++..+|+-.|||.. +...-+++.+ | +-
T Consensus 87 -~~d--aDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k-~~P~a~ilvvtNPvd---i~t~~~~k~s-g~p~~r 158 (330)
T 3ldh_A 87 -SAG--SKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVK-HSPDCLKELHPELGT---DKNKQDWKLS-GLPMHR 158 (330)
T ss_dssp -CSS--CSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHH-HCTTCEEEECSSSHH---HHHHHHHHHH-CCCGGG
T ss_pred -hCC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCceEEeCCCccH---HHHHHHHHHh-CCCHHH
Confidence 666 89988 33333331 23556677754 789999999999985 5556666665 3 45
Q ss_pred EEecCCC
Q 009519 466 VFASGSP 472 (533)
Q Consensus 466 i~AtGSP 472 (533)
+|.+|.-
T Consensus 159 ViG~gt~ 165 (330)
T 3ldh_A 159 IIGSGCN 165 (330)
T ss_dssp EECCTTH
T ss_pred eecccCc
Confidence 7777633
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=84.62 E-value=3.2 Score=41.90 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=88.0
Q ss_pred eeeeecCCCchHHHHHHHHh-ccCceeccCcc---hhHHHHHHHHHHHHHH---------hCC-------CCCCCCCceE
Q 009519 267 IVQFEDFQMKWAFETLERYR-KRFCMFNDDIQ---GTAGVALAGLLGTVRA---------QGL-------SLTDFADQKI 326 (533)
Q Consensus 267 ~I~~EDf~~~~af~iL~ryr-~~~~~FnDDiQ---GTaaV~LAgli~Alr~---------~g~-------~l~dl~~~ri 326 (533)
.|+.--.+..|- . ++..+ .-+++.|---. .+|=-+++.+++..|- .|. .-.+|...+|
T Consensus 72 ~I~~~~~G~d~i-d-~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~v 149 (331)
T 1xdw_A 72 YILTRTAGTDHI-D-KEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTV 149 (331)
T ss_dssp EEEESSSCCTTB-C-HHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEE
T ss_pred EEEEcccccccc-C-HHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEE
Confidence 555555554442 1 12222 34777664332 3444578888887762 111 1134555999
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcc
Q 009519 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (533)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~ 406 (533)
.|+|.|..|..+|+.+... |+ +++.+|+.. .. .+ + .++ ...+|.|+++.
T Consensus 150 gIiG~G~IG~~~A~~l~~~-----G~-------~V~~~d~~~----~~-~~---~-~~~----------~~~~l~ell~~ 198 (331)
T 1xdw_A 150 GVVGLGRIGRVAAQIFHGM-----GA-------TVIGEDVFE----IK-GI---E-DYC----------TQVSLDEVLEK 198 (331)
T ss_dssp EEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC----CC-SC---T-TTC----------EECCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCc----cH-HH---H-hcc----------ccCCHHHHHhh
Confidence 9999999999999988754 43 688888742 11 11 1 111 12369999987
Q ss_pred cCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 407 VKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 407 vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.|+++=.- ...+.++++.++.|. +..++.=.|.-.
T Consensus 199 --aDvV~~~~p~t~~t~~li~~~~l~~mk----~ga~lin~srg~ 237 (331)
T 1xdw_A 199 --SDIITIHAPYIKENGAVVTRDFLKKMK----DGAILVNCARGQ 237 (331)
T ss_dssp --CSEEEECCCCCTTTCCSBCHHHHHTSC----TTEEEEECSCGG
T ss_pred --CCEEEEecCCchHHHHHhCHHHHhhCC----CCcEEEECCCcc
Confidence 89988531 224889999999993 577888888543
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=84.61 E-value=2.9 Score=42.24 Aligned_cols=90 Identities=16% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|...+|.|+|.|..|..+|+.+... |+ +++.+|+.. .. ..+.... . ...+
T Consensus 143 ~l~g~~vgIIG~G~iG~~vA~~l~~~-----G~-------~V~~~d~~~---------~~---~~~~~~g-~----~~~~ 193 (333)
T 2d0i_A 143 SLYGKKVGILGMGAIGKAIARRLIPF-----GV-------KLYYWSRHR---------KV---NVEKELK-A----RYMD 193 (333)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGG-----TC-------EEEEECSSC---------CH---HHHHHHT-E----EECC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-----CC-------EEEEECCCc---------ch---hhhhhcC-c----eecC
Confidence 45559999999999999999987643 43 688888641 11 0111100 0 1136
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
|.|+++. +|+++=.-. ..+.++++.++.|. +. ++.-.|.
T Consensus 194 l~e~l~~--aDiVil~vp~~~~t~~~i~~~~~~~mk----~g-ilin~sr 236 (333)
T 2d0i_A 194 IDELLEK--SDIVILALPLTRDTYHIINEERVKKLE----GK-YLVNIGR 236 (333)
T ss_dssp HHHHHHH--CSEEEECCCCCTTTTTSBCHHHHHHTB----TC-EEEECSC
T ss_pred HHHHHhh--CCEEEEcCCCChHHHHHhCHHHHhhCC----CC-EEEECCC
Confidence 8898887 898773321 13678888899883 45 7777774
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.51 E-value=0.79 Score=44.24 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|..+|..|... |. +++++|++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~-----g~-------~V~~~~~~ 37 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVSDRN 37 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred ceEEEECchHHHHHHHHHHHhC-----CC-------EEEEEeCC
Confidence 3899999999999999988653 42 57888763
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=84.49 E-value=0.92 Score=43.91 Aligned_cols=93 Identities=10% Similarity=0.133 Sum_probs=57.0
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|+ |..|..+|..|.. .|. +++++|++- +.+. .+.... . ...++.+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~-----~g~-------~V~~~~r~~------~~~~----~~~~~g--~----~~~~~~~ 63 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD-----SAH-------HLAAIEIAP------EGRD----RLQGMG--I----PLTDGDG 63 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-----SSS-------EEEEECCSH------HHHH----HHHHTT--C----CCCCSSG
T ss_pred CEEEEECCCCHHHHHHHHHHHh-----CCC-------EEEEEECCH------HHHH----HHHhcC--C----CcCCHHH
Confidence 38999999 9999999998865 342 688887631 0111 111110 0 0124566
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++. +|++| ++..+.. .+++++.+.....+..||.-+|+..+
T Consensus 64 ~~~~--aDvVi-~av~~~~-~~~v~~~l~~~l~~~~ivv~~s~~~~ 105 (286)
T 3c24_A 64 WIDE--ADVVV-LALPDNI-IEKVAEDIVPRVRPGTIVLILDAAAP 105 (286)
T ss_dssp GGGT--CSEEE-ECSCHHH-HHHHHHHHGGGSCTTCEEEESCSHHH
T ss_pred HhcC--CCEEE-EcCCchH-HHHHHHHHHHhCCCCCEEEECCCCch
Confidence 7765 88877 3332333 68888887543445667777888654
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.46 E-value=2.3 Score=42.34 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=59.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC-CcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-DFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~-~~~~~~~~~~L~e 402 (533)
.+|.|+|+|..|..++..+... .|. ++++++|+. . +..+.|++... .. ....++.|
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~----~g~------~~V~v~dr~----~------~~~~~l~~~~~~~~---~~~~~~~e 192 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQ----FSF------KEVRIWNRT----K------ENAEKFADTVQGEV---RVCSSVQE 192 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CCC------SEEEEECSS----H------HHHHHHHHHSSSCC---EECSSHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----H------HHHHHHHHHhhCCe---EEeCCHHH
Confidence 7999999999999999888653 243 478888762 1 11122332210 01 12367999
Q ss_pred HhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecCC--CCCcccCCHHHHhc
Q 009519 403 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSN--PTMNAECTAADAFK 459 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLSN--Pt~~aE~tpe~A~~ 459 (533)
+++. +|++|=+... ..+|.+ +. ..+..+|+.+|. |.. .|+.+ ++.+
T Consensus 193 ~v~~--aDiVi~atp~~~~v~~~---~~----l~~g~~vi~~g~~~p~~-~el~~-~~~~ 241 (312)
T 2i99_A 193 AVAG--ADVIITVTLATEPILFG---EW----VKPGAHINAVGASRPDW-RELDD-ELMK 241 (312)
T ss_dssp HHTT--CSEEEECCCCSSCCBCG---GG----SCTTCEEEECCCCSTTC-CSBCH-HHHH
T ss_pred HHhc--CCEEEEEeCCCCcccCH---HH----cCCCcEEEeCCCCCCCc-eeccH-HHHh
Confidence 9987 8998844321 223333 12 235668888854 543 46654 4444
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.41 E-value=2.4 Score=43.91 Aligned_cols=187 Identities=19% Similarity=0.112 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 009519 298 GTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~ 359 (533)
.+|=-+++-+++..|-. |. .-.+|...++.|+|.|..|..+|+.+..+ |+
T Consensus 133 ~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~f-----G~------- 200 (365)
T 4hy3_A 133 PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGF-----RA------- 200 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTS-----CC-------
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhC-----CC-------
Confidence 34445677777776621 21 12345569999999999999999987543 44
Q ss_pred eEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCC
Q 009519 360 KFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDS 435 (533)
Q Consensus 360 ~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~ 435 (533)
+++.+|+.. +... ..... ....+|.|+++. .|+++=. ....+.|+++.++.|.
T Consensus 201 ~V~~~d~~~---------~~~~--~~~~g------~~~~~l~ell~~--aDvV~l~~Plt~~T~~li~~~~l~~mk---- 257 (365)
T 4hy3_A 201 RIRVFDPWL---------PRSM--LEENG------VEPASLEDVLTK--SDFIFVVAAVTSENKRFLGAEAFSSMR---- 257 (365)
T ss_dssp EEEEECSSS---------CHHH--HHHTT------CEECCHHHHHHS--CSEEEECSCSSCC---CCCHHHHHTSC----
T ss_pred EEEEECCCC---------CHHH--HhhcC------eeeCCHHHHHhc--CCEEEEcCcCCHHHHhhcCHHHHhcCC----
Confidence 678777631 1110 11110 012479999988 8998832 2234789999999993
Q ss_pred CCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCC-CCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHH
Q 009519 436 VKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS-PFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGM 514 (533)
Q Consensus 436 erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGS-Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M 514 (533)
+..|+.=.|.-..--|-.-.+|++ +|+.- | |- =|++-..+.+ ..--+..|+.+-|=+|-....+ -..|
T Consensus 258 ~gailIN~aRG~~vde~aL~~aL~--~g~i~-a-aLDV~~~EPl~~~--~pL~~~~nvilTPHia~~t~e~-----~~~~ 326 (365)
T 4hy3_A 258 RGAAFILLSRADVVDFDALMAAVS--SGHIV-A-ASDVYPEEPLPLD--HPVRSLKGFIRSAHRAGALDSA-----FKKM 326 (365)
T ss_dssp TTCEEEECSCGGGSCHHHHHHHHH--TTSSE-E-EESCCSSSSCCTT--CGGGTCTTEEECCSCSSCCHHH-----HHHH
T ss_pred CCcEEEECcCCchhCHHHHHHHHH--cCCce-E-EeeCCCCCCCCCC--ChhhcCCCEEECCccccCHHHH-----HHHH
Confidence 678888888754422333344544 56643 3 31 1111111101 1123567999999887533222 2456
Q ss_pred HHHHHHHHhcccCCCC
Q 009519 515 LQQAAEWYVCDNCNEP 530 (533)
Q Consensus 515 ~~aAA~alA~~v~~~~ 530 (533)
...+++-|......++
T Consensus 327 ~~~~~~ni~~~~~G~~ 342 (365)
T 4hy3_A 327 GDMVLEDMDLMDRGLP 342 (365)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6666666666555444
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=84.24 E-value=1.8 Score=43.30 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=72.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|.++|..++.. |+- ..++|+|.+-= ..+. .++.. +..+ .. ....++ +
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~-----g~~-----~ev~L~Di~~~-~~g~a~dl~~----~~~~--~i---~~t~d~-~ 73 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK-----GIA-----DRLVLLDLSEG-TKGATMDLEI----FNLP--NV---EISKDL-S 73 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECCC------CHHHHHH----HTCT--TE---EEESCG-G
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCC-----CEEEEEcCCcc-hHHHHHHHhh----hcCC--Ce---EEeCCH-H
Confidence 6899999999999999988643 432 57999998531 1111 01111 1111 11 112456 7
Q ss_pred HhcccCCcEEEEeccCC--CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEEE
Q 009519 403 VVRKVKPHVLLGLSGVG--GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~--g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai~ 467 (533)
++++ .|++|=..+.+ |- .-+++++.|.+ +++.-+|+-.|||.. +..+-+++.+. -.-+|
T Consensus 74 ~l~~--aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~sNP~~---~~t~~~~~~~~~p~~rvi 147 (303)
T 2i6t_A 74 ASAH--SKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGH-YSQHSVLLVASQPVE---IMTYVTWKLSTFPANRVI 147 (303)
T ss_dssp GGTT--CSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEECSSSHH---HHHHHHHHHHCCCGGGEE
T ss_pred HHCC--CCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEcCChHH---HHHHHHHHhcCCCHHHee
Confidence 7877 89988544332 21 23577778854 788999888999987 44555555321 23477
Q ss_pred ecCC
Q 009519 468 ASGS 471 (533)
Q Consensus 468 AtGS 471 (533)
++|.
T Consensus 148 G~gt 151 (303)
T 2i6t_A 148 GIGC 151 (303)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 8863
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=84.22 E-value=0.79 Score=46.17 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=63.7
Q ss_pred ceEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC--CcCCccCCCCH
Q 009519 324 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG--DFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~--~~~~~~~~~~L 400 (533)
.||+|.| +|..|..++..|.. .|+- ..++++|.+-- . .....+.+... .........++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~-----~g~~-----~ev~l~Di~~~----~----~~~~dL~~~~~~~~v~~~~~t~d~ 70 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKM-----NPLV-----SVLHLYDVVNA----P----GVTADISHMDTGAVVRGFLGQQQL 70 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHH-----CTTE-----EEEEEEESSSH----H----HHHHHHHTSCSSCEEEEEESHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCCC-----CEEEEEeCCCc----H----hHHHHhhcccccceEEEEeCCCCH
Confidence 5899999 79999999887653 3431 36999996421 0 00001111100 00000012368
Q ss_pred HHHhcccCCcEEEEeccCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+++++ .|++|=+.+.+ | ..++++++.|.+ ++.+.+|+--|||..
T Consensus 71 ~~al~g--aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~-~~p~~~viv~SNPv~ 129 (326)
T 1smk_A 71 EAALTG--MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CCPRAIVNLISNPVN 129 (326)
T ss_dssp HHHHTT--CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSHH
T ss_pred HHHcCC--CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEECCchH
Confidence 899988 89988554433 3 246778888854 678889999999986
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=5.1 Score=40.45 Aligned_cols=198 Identities=16% Similarity=0.093 Sum_probs=112.0
Q ss_pred cCceeccCcc---hhHHHHHHHHHHHHHHh---------C------CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 009519 288 RFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G------LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (533)
Q Consensus 288 ~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g------~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (533)
-+.|.|---. .+|=-+++.+++..|-. | ..-.+|...+|.|+|.|..|..+|+.+...
T Consensus 93 gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~---- 168 (333)
T 1j4a_A 93 GFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGF---- 168 (333)
T ss_dssp TCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHT----
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHHHHHHHHHC----
Confidence 4777775333 34444788888887721 2 111345559999999999999999988753
Q ss_pred cCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEecc----CCCCCCHH
Q 009519 350 AGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEE 425 (533)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ftee 425 (533)
|+ +++.+|+.. .. ..+ .++. ...+|.|+++. .|+++=.-. ..+.++++
T Consensus 169 -G~-------~V~~~d~~~------~~--~~~-~~~~---------~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~ 220 (333)
T 1j4a_A 169 -GA-------KVITYDIFR------NP--ELE-KKGY---------YVDSLDDLYKQ--ADVISLHVPDVPANVHMINDE 220 (333)
T ss_dssp -TC-------EEEEECSSC------CH--HHH-HTTC---------BCSCHHHHHHH--CSEEEECSCCCGGGTTCBSHH
T ss_pred -CC-------EEEEECCCc------ch--hHH-hhCe---------ecCCHHHHHhh--CCEEEEcCCCcHHHHHHHhHH
Confidence 43 688888632 10 011 1211 11369999987 899874421 24789999
Q ss_pred HHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEec-----CCC--CcceecCCCeeee-----ccccccee
Q 009519 426 VLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFAS-----GSP--FENVDLGNGKIGH-----VNQANNMY 493 (533)
Q Consensus 426 vv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~At-----GSP--f~pv~~~~G~~~~-----p~Q~NN~~ 493 (533)
.++.|. +..++.-.|.-..--|-.-.+|.+ +|+.--|. .-| ||+=.-. ..... --+..|+.
T Consensus 221 ~l~~mk----~ga~lIn~arg~~vd~~aL~~aL~--~g~i~gA~LDV~~~EP~~l~~~~~~-~~~~~p~~~~L~~~~nvi 293 (333)
T 1j4a_A 221 SIAKMK----QDVVIVNVSRGPLVDTDAVIRGLD--SGKIFGYAMDVYEGEVGIFNEDWEG-KEFPDARLADLIARPNVL 293 (333)
T ss_dssp HHHHSC----TTEEEEECSCGGGBCHHHHHHHHH--HTSEEEEEESCCTTCTTTTTSBCTT-SCCSCHHHHHHHHCTTEE
T ss_pred HHhhCC----CCcEEEECCCCcccCHHHHHHHHH--hCCceEEEEecCCCCCCcccccccc-ccCCccchhhHHhCCCEE
Confidence 999993 577888888754433333344444 45433231 112 2111000 00000 11356899
Q ss_pred echhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 494 LFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 494 iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
+-|=++-....+ -+.|...+++.|.+....+
T Consensus 294 lTPHia~~t~~~-----~~~~~~~~~~nl~~~~~g~ 324 (333)
T 1j4a_A 294 VTPKTAFYTTHA-----VRNMVVKAFDNNLELVEGK 324 (333)
T ss_dssp ECSSCTTCBHHH-----HHHHHHHHHHHHHHHHTTC
T ss_pred ECCccccCHHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 999887422211 2456666666666555444
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=84.09 E-value=1.2 Score=44.82 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=64.2
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc--Cc---cccCCCCCChhhhccccccCCcCCccCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD--GL---ITKERKNLDPAAAPFAKDPGDFMGLREG 397 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~--GL---i~~~r~~l~~~k~~~A~~~~~~~~~~~~ 397 (533)
.||+|.|| |..|..++..|+. .|+-..+-...++++|.+ .. +.....+|.+.-.++..+ . ...
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~-----~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~---i---~~~ 74 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIAN-----GDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAG---M---TAH 74 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEE---E---EEE
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCc---E---EEe
Confidence 69999998 9999998887764 243111112369999975 10 000000111100011111 0 123
Q ss_pred CCHHHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCC
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTM 448 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~-erPIIFaLSNPt~ 448 (533)
.++.+++++ .|++|=+.+.+ |. .++++++.+.+ ++ .+.+|+-.|||..
T Consensus 75 ~~~~~al~~--aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~~~p~a~ii~~SNPv~ 137 (329)
T 1b8p_A 75 ADPMTAFKD--ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDA-VASRNIKVLVVGNPAN 137 (329)
T ss_dssp SSHHHHTTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HSCTTCEEEECSSSHH
T ss_pred cCcHHHhCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEccCchH
Confidence 568999998 89888544433 31 35678888864 64 7767777899984
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=83.91 E-value=3.6 Score=42.15 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=114.8
Q ss_pred cCceeccC--cchhHHHHHHHHHHHHHHh---------C---C-------------CCCCCCCceEEEeCchhHHHHHHH
Q 009519 288 RFCMFNDD--IQGTAGVALAGLLGTVRAQ---------G---L-------------SLTDFADQKIVVVGAGSAGLGVLK 340 (533)
Q Consensus 288 ~~~~FnDD--iQGTaaV~LAgli~Alr~~---------g---~-------------~l~dl~~~riv~~GAGsAg~GiA~ 340 (533)
-++|.|-- -..+|=-+++-+++..|-. | + .-.+|...+|.|+|.|..|..+|+
T Consensus 98 gI~V~n~pg~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~ 177 (352)
T 3gg9_A 98 GVVVLEGKGSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177 (352)
T ss_dssp TCEEECCCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHH
Confidence 46666621 2344555677777776631 1 0 123455599999999999999999
Q ss_pred HHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----
Q 009519 341 MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS---- 416 (533)
Q Consensus 341 ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S---- 416 (533)
.+... |+ +++.+|+.. .. ..+... +.....+|.|+++. .|+++=.-
T Consensus 178 ~l~~~-----G~-------~V~~~d~~~---------~~---~~~~~~----g~~~~~~l~ell~~--aDiV~l~~Plt~ 227 (352)
T 3gg9_A 178 YGRAF-----GM-------NVLVWGREN---------SK---ERARAD----GFAVAESKDALFEQ--SDVLSVHLRLND 227 (352)
T ss_dssp HHHHT-----TC-------EEEEECSHH---------HH---HHHHHT----TCEECSSHHHHHHH--CSEEEECCCCST
T ss_pred HHHhC-----CC-------EEEEECCCC---------CH---HHHHhc----CceEeCCHHHHHhh--CCEEEEeccCcH
Confidence 88654 44 688888641 00 111110 00112479999988 89987431
Q ss_pred cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeech
Q 009519 417 GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFP 496 (533)
Q Consensus 417 ~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFP 496 (533)
...+.|+++.++.|. +..++.=.|+-..--|-.-.+|++ +|+.-.|.=-=|++-..+ ....--+..|+.+-|
T Consensus 228 ~t~~li~~~~l~~mk----~gailIN~aRg~~vd~~aL~~aL~--~g~i~gA~lDV~~~EPl~--~~~pL~~~~nvilTP 299 (352)
T 3gg9_A 228 ETRSIITVADLTRMK----PTALFVNTSRAELVEENGMVTALN--RGRPGMAAIDVFETEPIL--QGHTLLRMENCICTP 299 (352)
T ss_dssp TTTTCBCHHHHTTSC----TTCEEEECSCGGGBCTTHHHHHHH--HTSSSEEEECCCSSSCCC--SCCGGGGCTTEEECC
T ss_pred HHHHhhCHHHHhhCC----CCcEEEECCCchhhcHHHHHHHHH--hCCccEEEecccCCCCCC--CCChhhcCCCEEECC
Confidence 234789999999993 678999888755444555556665 454321110011111111 011123467999999
Q ss_pred hhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 497 GIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 497 GiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
=+|-..- .--+.|...+++-|.+....++
T Consensus 300 Hia~~t~-----e~~~~~~~~~~~ni~~~~~G~p 328 (352)
T 3gg9_A 300 HIGYVER-----ESYEMYFGIAFQNILDILQGNV 328 (352)
T ss_dssp SCTTCBH-----HHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCH-----HHHHHHHHHHHHHHHHHHcCCC
Confidence 8753211 1124566666776666555444
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.89 E-value=4 Score=40.93 Aligned_cols=186 Identities=21% Similarity=0.215 Sum_probs=106.9
Q ss_pred CceeccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCchhHHHHHHHHHHHHHH
Q 009519 289 FCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (533)
Q Consensus 289 ~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 347 (533)
+.+.|--- +.+|=-+++.+++..|-. |. .-.+|...+|.|+|.|..|..+|+.+...
T Consensus 89 i~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~-- 166 (311)
T 2cuk_A 89 IRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAF-- 166 (311)
T ss_dssp CEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHT--
T ss_pred cEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHC--
Confidence 66666432 233444678888776632 10 01245559999999999999999988653
Q ss_pred HHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCC
Q 009519 348 RMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFN 423 (533)
Q Consensus 348 ~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft 423 (533)
|+ +++.+|+.. .. .. +. ..+|.|+++. .|+++=.- ...+.++
T Consensus 167 ---G~-------~V~~~d~~~----~~--~~------~~----------~~~l~ell~~--aDvV~l~~p~~~~t~~li~ 212 (311)
T 2cuk_A 167 ---GM-------RVVYHARTP----KP--LP------YP----------FLSLEELLKE--ADVVSLHTPLTPETHRLLN 212 (311)
T ss_dssp ---TC-------EEEEECSSC----CS--SS------SC----------BCCHHHHHHH--CSEEEECCCCCTTTTTCBC
T ss_pred ---CC-------EEEEECCCC----cc--cc------cc----------cCCHHHHHhh--CCEEEEeCCCChHHHhhcC
Confidence 43 688888742 11 11 10 2468999987 89988541 1247888
Q ss_pred HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe----cC-CCCcceecCCCeeeecccccceeechhh
Q 009519 424 EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA----SG-SPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 424 eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A----tG-SPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
++.++.|. +..++.=.|.-..--|..-.+|.+ |+.--| .+ -|.++ . ..--+..|+.+-|=+
T Consensus 213 ~~~l~~mk----~ga~lin~srg~~vd~~aL~~aL~---g~i~ga~lDv~~~eP~~~-----~--~~L~~~~nviltPh~ 278 (311)
T 2cuk_A 213 RERLFAMK----RGAILLNTARGALVDTEALVEALR---GHLFGAGLDVTDPEPLPP-----G--HPLYALPNAVITPHI 278 (311)
T ss_dssp HHHHTTSC----TTCEEEECSCGGGBCHHHHHHHHT---TTSSEEEESSCSSSSCCT-----T--SGGGGCTTEEECCSC
T ss_pred HHHHhhCC----CCcEEEECCCCCccCHHHHHHHHh---CcCCEEEEeeCCCCCCCC-----C--ChhhhCCCEEECCcC
Confidence 88888883 678888888744322322334443 331111 11 12111 0 112246789999977
Q ss_pred hHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 499 GLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 499 glG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
+-....+ -..|...+++.|.+....+
T Consensus 279 ~~~t~~~-----~~~~~~~~~~nl~~~~~g~ 304 (311)
T 2cuk_A 279 GSAGRTT-----RERMAEVAVENLLAVLEGR 304 (311)
T ss_dssp TTCBHHH-----HHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 6422211 2455666666666555443
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=0.56 Score=47.90 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=29.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|+|..|..||+.|+.+++ ++|.++|.+
T Consensus 37 ~~VlivG~GGlG~~ia~~La~~Gv-----------g~itlvD~d 69 (346)
T 1y8q_A 37 SRVLLVGLKGLGAEIAKNLILAGV-----------KGLTMLDHE 69 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-----------SEEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEECC
Confidence 899999999999999999998755 699999975
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=83.72 E-value=4.4 Score=40.84 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=128.7
Q ss_pred CCc-eeeeecCCCchHHH-HHH---HHhccCceec--cC--cchhHHHHHHHHHHHHHHh---------C----CCCCCC
Q 009519 264 PKA-IVQFEDFQMKWAFE-TLE---RYRKRFCMFN--DD--IQGTAGVALAGLLGTVRAQ---------G----LSLTDF 321 (533)
Q Consensus 264 P~~-~I~~EDf~~~~af~-iL~---ryr~~~~~Fn--DD--iQGTaaV~LAgli~Alr~~---------g----~~l~dl 321 (533)
|+. .|+.-=.+..|-.. +-. -.+..+++.| +- -+.+|=-+++.+++..|-. | .+..+|
T Consensus 58 ~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l 137 (315)
T 3pp8_A 58 RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTR 137 (315)
T ss_dssp CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCS
T ss_pred CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCc
Confidence 776 77776666665423 322 1223466665 22 1456667788888887641 1 122344
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..- ...... .+. ...+|.
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~-----G~-------~V~~~dr~~~------~~~~~~-~~~----------~~~~l~ 188 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAW-----GF-------PLRCWSRSRK------SWPGVE-SYV----------GREELR 188 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTT-----TC-------CEEEEESSCC------CCTTCE-EEE----------SHHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEEcCCch------hhhhhh-hhc----------ccCCHH
Confidence 559999999999999999988654 44 6888886421 111100 010 114699
Q ss_pred HHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCccee
Q 009519 402 EVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVD 477 (533)
Q Consensus 402 e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~ 477 (533)
|+++. .|+++=.- ...+.|+++.++.|. +..|+.=.|.-..--|-.-.+|++ +|+.--|.=-=|++-.
T Consensus 189 ell~~--aDiV~l~~Plt~~t~~li~~~~l~~mk----~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA~lDV~~~EP 260 (315)
T 3pp8_A 189 AFLNQ--TRVLINLLPNTAQTVGIINSELLDQLP----DGAYVLNLARGVHVQEADLLAALD--SGKLKGAMLDVFSQEP 260 (315)
T ss_dssp HHHHT--CSEEEECCCCCGGGTTCBSHHHHTTSC----TTEEEEECSCGGGBCHHHHHHHHH--HTSEEEEEESCCSSSS
T ss_pred HHHhh--CCEEEEecCCchhhhhhccHHHHhhCC----CCCEEEECCCChhhhHHHHHHHHH--hCCccEEEcCCCCCCC
Confidence 99987 89987431 124789999999993 678888888755433433444544 5554333211121111
Q ss_pred cCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 478 LGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
.+.. ..--+..|+.+-|=++-. +. .+.|...+++-|.+....++
T Consensus 261 l~~~--~pL~~~~nvilTPHia~~------t~-~~~~~~~~~~ni~~~~~G~~ 304 (315)
T 3pp8_A 261 LPQE--SPLWRHPRVAMTPHIAAV------TR-PAEAIDYISRTITQLEKGEP 304 (315)
T ss_dssp CCTT--CGGGGCTTEEECSSCSSC------CC-HHHHHHHHHHHHHHHHHTCC
T ss_pred CCCC--ChhhcCCCEEECCCCCcc------cH-HHHHHHHHHHHHHHHHcCCC
Confidence 1101 112356789999987632 22 25677777777766655444
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=83.46 E-value=7.2 Score=39.90 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=113.5
Q ss_pred CceeccCc---chhHHHHHHHHHHHHHH----------hCC-------CCCCCCCceEEEeCchhHHHHHHHHHHHHHHH
Q 009519 289 FCMFNDDI---QGTAGVALAGLLGTVRA----------QGL-------SLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (533)
Q Consensus 289 ~~~FnDDi---QGTaaV~LAgli~Alr~----------~g~-------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 348 (533)
+++.|--- +.+|=-+++-+++..|- .|. .-.+|.+.+|.|+|.|..|..+|+.+...
T Consensus 94 I~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~--- 170 (343)
T 2yq5_A 94 LLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAM--- 170 (343)
T ss_dssp CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHT---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhC---
Confidence 66666532 23455668888877762 221 12245559999999999999999988754
Q ss_pred HcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEecc----CCCCCCH
Q 009519 349 MAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNE 424 (533)
Q Consensus 349 ~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Fte 424 (533)
|+ +++.+|+..- +.....+ ...+|.|+++. .|+++=.-- ..+.|++
T Consensus 171 --G~-------~V~~~d~~~~---------~~~~~~~----------~~~~l~ell~~--aDvV~l~~Plt~~t~~li~~ 220 (343)
T 2yq5_A 171 --GA-------KVIAYDVAYN---------PEFEPFL----------TYTDFDTVLKE--ADIVSLHTPLFPSTENMIGE 220 (343)
T ss_dssp --TC-------EEEEECSSCC---------GGGTTTC----------EECCHHHHHHH--CSEEEECCCCCTTTTTCBCH
T ss_pred --CC-------EEEEECCChh---------hhhhccc----------cccCHHHHHhc--CCEEEEcCCCCHHHHHHhhH
Confidence 44 6888887421 1000000 12479999988 899884422 2488999
Q ss_pred HHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCC--cceecCCC----ee-----eeccccccee
Q 009519 425 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPF--ENVDLGNG----KI-----GHVNQANNMY 493 (533)
Q Consensus 425 evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf--~pv~~~~G----~~-----~~p~Q~NN~~ 493 (533)
+.++.|. +..++.=.|.-..--|-.-.+|++ +|+.-.|.=-=| +|..++.. +. ..--+..|+.
T Consensus 221 ~~l~~mk----~gailIN~aRg~~vd~~aL~~aL~--~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi 294 (343)
T 2yq5_A 221 KQLKEMK----KSAYLINCARGELVDTGALIKALQ--DGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV 294 (343)
T ss_dssp HHHHHSC----TTCEEEECSCGGGBCHHHHHHHHH--HTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred HHHhhCC----CCcEEEECCCChhhhHHHHHHHHH--cCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence 9999993 678888888754433333344443 343211110011 11001000 00 0123567999
Q ss_pred echhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 494 LFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 494 iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
+-|=+|-..- .--..|...+++-|.+....++
T Consensus 295 lTPHia~~t~-----ea~~~~~~~~~~ni~~~l~g~~ 326 (343)
T 2yq5_A 295 ITPHSAFYTE-----TSIRNMVQICLTDQLTIAKGGR 326 (343)
T ss_dssp ECSSCTTCBH-----HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ECCccccchH-----HHHHHHHHHHHHHHHHHHcCCC
Confidence 9998863222 2224666666776666555443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=83.18 E-value=2.6 Score=43.99 Aligned_cols=195 Identities=16% Similarity=0.102 Sum_probs=105.8
Q ss_pred cCceeccCc---chhHHHHHHHHHHHHHHh--------------------CCCCCCCCCceEEEeCchhHHHHHHHHHHH
Q 009519 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ--------------------GLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 288 ~~~~FnDDi---QGTaaV~LAgli~Alr~~--------------------g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 344 (533)
-+.|.|--- +.+|=-+++-+|+..|-. +..|.. .++.|+|.|..|..+|+.+..
T Consensus 136 gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g---ktvGIIGlG~IG~~vA~~l~a 212 (393)
T 2nac_A 136 NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEA---MHVGTVAAGRIGLAVLRRLAP 212 (393)
T ss_dssp TCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTT---CEEEEECCSHHHHHHHHHHGG
T ss_pred CEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCC---CEEEEEeECHHHHHHHHHHHh
Confidence 366666221 234445677777776532 334444 999999999999999998865
Q ss_pred HHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCC
Q 009519 345 AAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGG 420 (533)
Q Consensus 345 ~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g 420 (533)
. |+ +++.+|+... .. ..++... .....+|.|+++. .|+++=.- ...+
T Consensus 213 ~-----G~-------~V~~~d~~~~--------~~---~~~~~~G----~~~~~~l~ell~~--aDvV~l~~Plt~~t~~ 263 (393)
T 2nac_A 213 F-----DV-------HLHYTDRHRL--------PE---SVEKELN----LTWHATREDMYPV--CDVVTLNCPLHPETEH 263 (393)
T ss_dssp G-----TC-------EEEEECSSCC--------CH---HHHHHHT----CEECSSHHHHGGG--CSEEEECSCCCTTTTT
T ss_pred C-----CC-------EEEEEcCCcc--------ch---hhHhhcC----ceecCCHHHHHhc--CCEEEEecCCchHHHH
Confidence 3 43 6887876311 11 1111100 0012469999987 89887442 2247
Q ss_pred CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhH
Q 009519 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 421 ~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
+|+++.++.|. +..++.=.|.-..--|-.-.+|++ +|+.--|.--=|.+-..+... .--+..|+.+-|=++-
T Consensus 264 li~~~~l~~mk----~gailIN~aRG~~vde~aL~~aL~--~g~i~gA~lDV~~~EP~~~~~--pL~~~~nvilTPHia~ 335 (393)
T 2nac_A 264 MINDETLKLFK----RGAYIVNTARGKLCDRDAVARALE--SGRLAGYAGDVWFPQPAPKDH--PWRTMPYNGMTPHISG 335 (393)
T ss_dssp CBSHHHHTTSC----TTEEEEECSCGGGBCHHHHHHHHH--TTSEEEEEESCCSSSSCCTTC--GGGTSTTBCCCCSCTT
T ss_pred HhhHHHHhhCC----CCCEEEECCCchHhhHHHHHHHHH--cCCeeEEEEEecCCCCCCCCC--hhHcCCCEEECCCCCc
Confidence 89999999993 577888888643322222334443 565332221111100000011 1124668999998764
Q ss_pred HHHHhCCcccCHHHHHHHHHHHhcccC
Q 009519 501 GTLLSGARFITDGMLQQAAEWYVCDNC 527 (533)
Q Consensus 501 G~l~~~a~~Itd~M~~aAA~alA~~v~ 527 (533)
....+ ...|...+++-|.+...
T Consensus 336 ~T~e~-----~~~~~~~~~~nl~~~~~ 357 (393)
T 2nac_A 336 TTLTA-----QARYAAGTREILECFFE 357 (393)
T ss_dssp CSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CcHHH-----HHHHHHHHHHHHHHHHc
Confidence 33222 12344445555544433
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=83.18 E-value=0.97 Score=45.30 Aligned_cols=127 Identities=18% Similarity=0.231 Sum_probs=72.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||+.|..+|-+|+. .++- ..++|+|.+-=-.++ ..+|.+. .+|.++.. . ...+ .++
T Consensus 2 KI~IiGaG~vG~~~a~~l~~-----~~~~-----~el~L~Di~~~k~~g~a~dl~~~-~~~~~~~~-v----~~~~-~~a 64 (310)
T 2xxj_A 2 KVGIVGSGMVGSATAYALAL-----LGVA-----REVVLVDLDRKLAQAHAEDILHA-TPFAHPVW-V----WAGS-YGD 64 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTCC-----SEEEEECSSHHHHHHHHHHHHTT-GGGSCCCE-E----EECC-GGG
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCChhHHHHHHHHHHHh-HhhcCCeE-E----EECC-HHH
Confidence 89999999999998887654 2332 489999985200000 0012111 12221110 0 0123 667
Q ss_pred hcccCCcEEEEec---cCCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEEE
Q 009519 404 VRKVKPHVLLGLS---GVGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S---~~~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai~ 467 (533)
+++ +|++|=+. ..+|- .-+++++.|.+ +++.-+|+-.|||.. .+.+-+++.+ .-.-+|
T Consensus 65 ~~~--aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~tNPv~---~~t~~~~k~s~~p~~rvi 138 (310)
T 2xxj_A 65 LEG--ARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLE-AAPEAVLLVATNPVD---VMTQVAYALSGLPPGRVV 138 (310)
T ss_dssp GTT--EEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSSHH---HHHHHHHHHHTCCGGGEE
T ss_pred hCC--CCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHH-HCCCcEEEEecCchH---HHHHHHHHHcCCCHHHEE
Confidence 877 89988433 33342 22456666644 788999999999986 4445555543 112467
Q ss_pred ecCCCCc
Q 009519 468 ASGSPFE 474 (533)
Q Consensus 468 AtGSPf~ 474 (533)
.+|.=.+
T Consensus 139 G~gt~LD 145 (310)
T 2xxj_A 139 GSGTILD 145 (310)
T ss_dssp ECTTHHH
T ss_pred ecCcchh
Confidence 7764433
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.17 E-value=6.4 Score=40.25 Aligned_cols=194 Identities=17% Similarity=0.161 Sum_probs=101.4
Q ss_pred CceeccCc---chhHHHHHHHHHHHHHHh---------C----C-CC---CCCCCceEEEeCchhHHHHHHHHHHHHHHH
Q 009519 289 FCMFNDDI---QGTAGVALAGLLGTVRAQ---------G----L-SL---TDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (533)
Q Consensus 289 ~~~FnDDi---QGTaaV~LAgli~Alr~~---------g----~-~l---~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 348 (533)
|+|.|--- ..+|=-+++-+++..|-. | . .. .+|...+|.|+|.|..|..+|+.+...
T Consensus 117 I~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~--- 193 (340)
T 4dgs_A 117 IDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAF--- 193 (340)
T ss_dssp CEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTT---
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHC---
Confidence 55555321 234555677777776531 1 0 11 345559999999999999999988643
Q ss_pred HcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCH
Q 009519 349 MAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNE 424 (533)
Q Consensus 349 ~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fte 424 (533)
|+ +++.+|+.. .. .. .+ ....+|.|+++. .|+++=.- ...+.+++
T Consensus 194 --G~-------~V~~~dr~~----~~-~~-----~~----------~~~~sl~ell~~--aDvVil~vP~t~~t~~li~~ 242 (340)
T 4dgs_A 194 --GM-------SVRYWNRST----LS-GV-----DW----------IAHQSPVDLARD--SDVLAVCVAASAATQNIVDA 242 (340)
T ss_dssp --TC-------EEEEECSSC----CT-TS-----CC----------EECSSHHHHHHT--CSEEEECC----------CH
T ss_pred --CC-------EEEEEcCCc----cc-cc-----Cc----------eecCCHHHHHhc--CCEEEEeCCCCHHHHHHhhH
Confidence 44 688888632 11 00 01 012579999988 89987432 12478999
Q ss_pred HHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHH
Q 009519 425 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 504 (533)
Q Consensus 425 evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~ 504 (533)
+.++.|. +..++.=.|.-..--|-.-.+|++ +|+.-.|.=-=|++-..++ ..--+..|+.+-|=+|-....
T Consensus 243 ~~l~~mk----~gailIN~aRG~vvde~aL~~aL~--~g~i~gA~LDVf~~EP~~~---~~L~~~~nvilTPHia~~t~e 313 (340)
T 4dgs_A 243 SLLQALG----PEGIVVNVARGNVVDEDALIEALK--SGTIAGAGLDVFVNEPAIR---SEFHTTPNTVLMPHQGSATVE 313 (340)
T ss_dssp HHHHHTT----TTCEEEECSCC----------------CCSSEEEESCCSSSSSCC---SHHHHSSSEEECSSCSSCCHH
T ss_pred HHHhcCC----CCCEEEECCCCcccCHHHHHHHHH--cCCceEEEeCCcCCCCCCc---cchhhCCCEEEcCcCCcCCHH
Confidence 9999994 577888888755533554555554 4543222111111111110 122356788999987643322
Q ss_pred hCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 505 SGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 505 ~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
+ -+.|...+++.|.+....++
T Consensus 314 ~-----~~~~~~~~~~nl~~~~~g~~ 334 (340)
T 4dgs_A 314 T-----RMAMGKLVLANLAAHFAGEK 334 (340)
T ss_dssp H-----HHHHHHHHHHHHHHHHTTSC
T ss_pred H-----HHHHHHHHHHHHHHHHcCCC
Confidence 2 24566666666666555444
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.01 E-value=1.4 Score=43.18 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=52.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..|... |. +++++|++. + .+.. +++..- ....++.|+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~-----g~-------~V~~~~~~~----~--~~~~----~~~~g~-----~~~~~~~~~ 83 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM-----GH-------TVTVWNRTA----E--KCDL----FIQEGA-----RLGRTPAEV 83 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSG----G--GGHH----HHHTTC-----EECSCHHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEeCCH----H--HHHH----HHHcCC-----EEcCCHHHH
Confidence 6899999999999999988653 43 578887631 1 1111 111100 112457777
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhh---hcCCCCCeEEecCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMR---ESDSVKPAIFAMSNPT 447 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma---~~~~erPIIFaLSNPt 447 (533)
++. +|++|= +.....-.++++.... +...+..+|+-+||-.
T Consensus 84 ~~~--~DvVi~-av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~ 127 (316)
T 2uyy_A 84 VST--CDITFA-CVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVD 127 (316)
T ss_dssp HHH--CSEEEE-CCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred Hhc--CCEEEE-eCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence 776 777663 2211233445554321 2234556777777744
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=0.76 Score=43.92 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=23.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|+|..|..+|..|.. |. +++++|++
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~------g~-------~V~~~~~~ 32 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR------RF-------PTLVWNRT 32 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT------TS-------CEEEECSS
T ss_pred eEEEEcccHHHHHHHHHHhC------CC-------eEEEEeCC
Confidence 79999999999999988753 32 57778763
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.86 E-value=1.5 Score=42.99 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..|... |. +++++|++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~-----G~-------~V~~~dr~ 47 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW-----PG-------GVTVYDIR 47 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS-----TT-------CEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 5899999999999999988753 43 57778763
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=82.80 E-value=0.6 Score=46.79 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=70.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|.++|..+... |+- ..|+++|.+--..+.. .++.+. .++... ++ .-..+..+
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~-----~~~-----~ev~l~Di~~~~~~~~~~dl~~~-~~~~~~--~~---~i~~~~~~ 70 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ-----GIA-----DEIVLIDANESKAIGDAMDFNHG-KVFAPK--PV---DIWHGDYD 70 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHHHHHHHHHHHH-TTSSSS--CC---EEEECCGG
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CCC-----CEEEEEeCCcchHHHHHhhHHHH-hhhcCC--Ce---EEEcCcHH
Confidence 5999999999999999766542 432 4799999852111100 011111 111110 00 00112356
Q ss_pred HhcccCCcEEEEeccCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai 466 (533)
++++ +|++|=+.+.+ | ...+++++.|.+ +++.-++|-.|||.. ...+-+++.+. -.-+
T Consensus 71 al~~--aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~~iv~tNPv~---~~~~~~~~~s~~p~~rv 144 (316)
T 1ldn_A 71 DCRD--ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMA-SGFQGLFLVATNPVD---ILTYATWKFSGLPHERV 144 (316)
T ss_dssp GTTT--CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHH-HTCCSEEEECSSSHH---HHHHHHHHHHTCCGGGE
T ss_pred HhCC--CCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHH-HCCCCEEEEeCCchH---HHHHHHHHHhCCCHHHE
Confidence 7777 89987443332 2 234567777754 677888888999986 34444555321 1246
Q ss_pred EecCC
Q 009519 467 FASGS 471 (533)
Q Consensus 467 ~AtGS 471 (533)
|.+|.
T Consensus 145 iG~gt 149 (316)
T 1ldn_A 145 IGSGT 149 (316)
T ss_dssp EECTT
T ss_pred Eeccc
Confidence 66654
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=82.80 E-value=0.64 Score=45.62 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..|... |. +++++|++
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~ 39 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA-----GL-------STWGADLN 39 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEECC
Confidence 6899999999999999998764 43 67788864
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=82.67 E-value=6.4 Score=39.79 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=86.6
Q ss_pred cCceeccCcch---hHHHHHHHHHHHHHHh----------------CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHH
Q 009519 288 RFCMFNDDIQG---TAGVALAGLLGTVRAQ----------------GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (533)
Q Consensus 288 ~~~~FnDDiQG---TaaV~LAgli~Alr~~----------------g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 348 (533)
-+.|.|=--.. +|=-+++.+++..|-. +..-.+|...+|.|+|.|..|..+|+.+...
T Consensus 91 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~--- 167 (333)
T 1dxy_A 91 GIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGF--- 167 (333)
T ss_dssp TCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHT---
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHHHHHHHHC---
Confidence 47777643333 3444688888776511 1111344559999999999999999988754
Q ss_pred HcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEecc----CCCCCCH
Q 009519 349 MAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNE 424 (533)
Q Consensus 349 ~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Fte 424 (533)
|+ +++.+|+.. .. ... .++ ...+|.|+++. .|+++=.-- ..+.|++
T Consensus 168 --G~-------~V~~~d~~~----~~-~~~----~~~----------~~~~l~ell~~--aDvV~~~~P~~~~t~~li~~ 217 (333)
T 1dxy_A 168 --GA-------KVIAYDPYP----MK-GDH----PDF----------DYVSLEDLFKQ--SDVIDLHVPGIEQNTHIINE 217 (333)
T ss_dssp --TC-------EEEEECSSC----CS-SCC----TTC----------EECCHHHHHHH--CSEEEECCCCCGGGTTSBCH
T ss_pred --CC-------EEEEECCCc----ch-hhH----hcc----------ccCCHHHHHhc--CCEEEEcCCCchhHHHHhCH
Confidence 43 688888742 11 111 111 12368999987 899884421 2478999
Q ss_pred HHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEE
Q 009519 425 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIV 466 (533)
Q Consensus 425 evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai 466 (533)
+.++.|. +..++.=.|.-..--|-.-.+|.+ +|+.-
T Consensus 218 ~~l~~mk----~ga~lIn~srg~~vd~~aL~~aL~--~g~i~ 253 (333)
T 1dxy_A 218 AAFNLMK----PGAIVINTARPNLIDTQAMLSNLK--SGKLA 253 (333)
T ss_dssp HHHHHSC----TTEEEEECSCTTSBCHHHHHHHHH--TTSEE
T ss_pred HHHhhCC----CCcEEEECCCCcccCHHHHHHHHH--hCCcc
Confidence 9999993 577888888755432333334443 55533
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=1.1 Score=44.69 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=27.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||||+|+|.||+..|..|.+. |-+ -+|.++|++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~-----~~~-----~~Vtlie~~ 36 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLA-----DPS-----IEVTLIEPN 36 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CTT-----SEEEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhc-----CcC-----CeEEEEeCC
Confidence 36999999999999999998654 221 268888875
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=82.54 E-value=4.5 Score=41.09 Aligned_cols=186 Identities=15% Similarity=0.208 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHh---------C----CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEe
Q 009519 299 TAGVALAGLLGTVRAQ---------G----LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLD 365 (533)
Q Consensus 299 TaaV~LAgli~Alr~~---------g----~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD 365 (533)
+|=-+++.+++..|-. | ....+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d 170 (324)
T 3hg7_A 103 MSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHF-----GM-------KVLGVS 170 (324)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 3444677777766521 1 122344459999999999999999998654 44 688888
Q ss_pred ccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 366 KDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 366 ~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
+.. . .... +... ....+|.|+++. .|+++=.- ...+.|+++.++.|. +..|+.
T Consensus 171 r~~---~---~~~~----~~~~-------~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~gailI 227 (324)
T 3hg7_A 171 RSG---R---ERAG----FDQV-------YQLPALNKMLAQ--ADVIVSVLPATRETHHLFTASRFEHCK----PGAILF 227 (324)
T ss_dssp SSC---C---CCTT----CSEE-------ECGGGHHHHHHT--CSEEEECCCCCSSSTTSBCTTTTTCSC----TTCEEE
T ss_pred CCh---H---Hhhh----hhcc-------cccCCHHHHHhh--CCEEEEeCCCCHHHHHHhHHHHHhcCC----CCcEEE
Confidence 753 1 1111 1110 013569999988 89987431 224788999888883 678888
Q ss_pred ecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHH
Q 009519 442 AMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEW 521 (533)
Q Consensus 442 aLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~a 521 (533)
=.|.-..--|-.-.+|++ +|+.-.|.=-=|++-..+.. ..--+..|+.+-|=++-. +. ...|...+++-
T Consensus 228 N~aRG~~vde~aL~~aL~--~g~i~ga~lDV~~~EPl~~~--~pL~~~~nvilTPHia~~------t~-~~~~~~~~~~n 296 (324)
T 3hg7_A 228 NVGRGNAINEGDLLTALR--TGKLGMAVLDVFEQEPLPAD--SPLWGQPNLIITPHNSAY------SF-PDDVAQIFVRN 296 (324)
T ss_dssp ECSCGGGBCHHHHHHHHH--TTSSSEEEESCCSSSSCCTT--CTTTTCTTEEECCSCSSC------CC-HHHHHHHHHHH
T ss_pred ECCCchhhCHHHHHHHHH--cCCceEEEeccCCCCCCCCC--ChhhcCCCEEEeCCCccc------cH-HHHHHHHHHHH
Confidence 888755433433344544 45432121000110001000 111246789999987632 22 35677777777
Q ss_pred HhcccCCCC
Q 009519 522 YVCDNCNEP 530 (533)
Q Consensus 522 lA~~v~~~~ 530 (533)
|......++
T Consensus 297 l~~~~~G~~ 305 (324)
T 3hg7_A 297 YIRFIDGQP 305 (324)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 776665554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=2 Score=43.76 Aligned_cols=126 Identities=20% Similarity=0.284 Sum_probs=74.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|..|+.. |+- ..+.++|.+-=..++- .+|.+. .+|..+.. ...+..+
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~-----~~~-----~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~------i~~~~~~ 72 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ-----GIA-----QEIGIVDIFKDKTKGDAIDLEDA-LPFTSPKK------IYSAEYS 72 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSCHHHHHHHHHHHHTT-GGGSCCCE------EEECCGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCC-----CeEEEEeCChHHHHHHHhhHhhh-hhhcCCcE------EEECcHH
Confidence 6999999999999999888764 432 4799999731100100 012221 12221110 0122356
Q ss_pred HhcccCCcEEEEeccCC---C-----CC------CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---G-----VF------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g-----~F------teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai 466 (533)
++++ +|++|=+.+.+ | +| -+++++.|.+ ++++.+|+-.|||.. +..+-+++.+. -+-+
T Consensus 73 a~~~--aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~-~~p~a~ilvvtNPvd---i~t~~~~k~~g~p~~rv 146 (326)
T 3vku_A 73 DAKD--ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD-SGFNGIFLVAANPVD---ILTYATWKLSGFPKNRV 146 (326)
T ss_dssp GGTT--CSEEEECCCCC----------------CHHHHHHHHHT-TTCCSEEEECSSSHH---HHHHHHHHHHCCCGGGE
T ss_pred HhcC--CCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh-cCCceEEEEccCchH---HHHHHHHHhcCCCHHHe
Confidence 6777 88877443322 2 22 3677888864 899999999999985 55555666541 1356
Q ss_pred EecCCC
Q 009519 467 FASGSP 472 (533)
Q Consensus 467 ~AtGSP 472 (533)
|++|.-
T Consensus 147 iG~gt~ 152 (326)
T 3vku_A 147 VGSGTS 152 (326)
T ss_dssp EECTTH
T ss_pred eeeccc
Confidence 777643
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=82.43 E-value=0.52 Score=47.05 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=69.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc----cCCcCCccCCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD----PGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~----~~~~~~~~~~~~ 399 (533)
.||.|+|||..|.++|..+.. .|+ + .++++|.+- ++ +......+.+. ..... .....+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~-----~g~----~--~v~L~Di~~----~~--~~g~~~dl~~~~~~~~~~~~-i~~t~d 64 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAA-----KEL----G--DIVLLDIVE----GV--PQGKALDLYEASPIEGFDVR-VTGTNN 64 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC----S--EEEEECSSS----SH--HHHHHHHHHTTHHHHTCCCC-EEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCC----C--eEEEEeCCc----cH--HHHHHHhHHHhHhhcCCCeE-EEECCC
Confidence 589999999999999997754 343 1 399999741 11 11111111110 00000 011245
Q ss_pred HHHHhcccCCcEEEEeccCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--C
Q 009519 400 LLEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--G 463 (533)
+ +++++ .|++|=+.+.| | ..-+++.+.+.+ ++++-+|+--|||.. ...+-+++.+. -
T Consensus 65 ~-~a~~~--aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~vi~~tNPv~---~~t~~~~~~~~~~~ 137 (309)
T 1ur5_A 65 Y-ADTAN--SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAP-LSPNAVIIMVNNPLD---AMTYLAAEVSGFPK 137 (309)
T ss_dssp G-GGGTT--CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGG-GCTTCEEEECCSSHH---HHHHHHHHHHCCCG
T ss_pred H-HHHCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEcCCchH---HHHHHHHHHcCCCH
Confidence 6 77877 89987444333 3 122467777754 678888877899987 23444545321 1
Q ss_pred cEEEecCCC
Q 009519 464 NIVFASGSP 472 (533)
Q Consensus 464 rai~AtGSP 472 (533)
.-+|++|.-
T Consensus 138 ~rviG~gt~ 146 (309)
T 1ur5_A 138 ERVIGQAGV 146 (309)
T ss_dssp GGEEECCHH
T ss_pred HHEEECCcc
Confidence 247777633
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=82.25 E-value=2.5 Score=44.46 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=52.1
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
-|++|+|+ |-+|.|-++.+... |.. ..++..+|.+= ..+ .. .+ +
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l-----Ga~----~~~V~v~D~~~---~~~-------------g~---------~~-~ 259 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV-----GIP----DANILKWDIKE---TSR-------------GG---------PF-D 259 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCC----GGGEEEECHHH---HTT-------------CS---------CC-T
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC-----CCC----cCceEEeeccc---ccc-------------CC---------ch-h
Confidence 68999999 99999999988765 321 01566666531 000 00 01 1
Q ss_pred HhcccCCcEEEEeccC----CCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 403 VVRKVKPHVLLGLSGV----GGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~----~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+.. .|++||+--. |-++|+|+++.|. .+--+|.=+|
T Consensus 260 ~i~~--aDivIn~vlig~~aP~Lvt~e~v~~m~---k~gsVIVDVA 300 (394)
T 2qrj_A 260 EIPQ--ADIFINCIYLSKPIAPFTNMEKLNNPN---RRLRTVVDVS 300 (394)
T ss_dssp HHHH--SSEEEECCCCCSSCCCSCCHHHHCCTT---CCCCEEEETT
T ss_pred hHhh--CCEEEECcCcCCCCCcccCHHHHhcCc---CCCeEEEEEe
Confidence 2444 7999988654 6789999999992 2445555454
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=82.08 E-value=0.58 Score=46.91 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=69.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccc------ccCCcCCccCCC
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK------DPGDFMGLREGA 398 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~------~~~~~~~~~~~~ 398 (533)
||.|+|||+.|.++|-.++.. |+ ..++|+|.+ .++ +......+.+ ..... ....
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-----~l------~el~L~Di~----~~~--~~g~~~dl~~~~~~~~~~~~i---~~t~ 60 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-----GY------DDLLLIART----PGK--PQGEALDLAHAAAELGVDIRI---SGSN 60 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-----TC------SCEEEECSS----TTH--HHHHHHHHHHHHHHHTCCCCE---EEES
T ss_pred CEEEECcCHHHHHHHHHHHhC-----CC------CEEEEEcCC----hhh--HHHHHHHHHHhhhhcCCCeEE---EECC
Confidence 689999999999999776542 54 269999985 111 1111111111 11011 1113
Q ss_pred CHHHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--
Q 009519 399 SLLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-- 462 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~-- 462 (533)
+. +++++ +|++|=..+.+ |- .-+++++.|.+ +++..+|+-.|||.. ...+-+++.+.
T Consensus 61 d~-~a~~~--aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~tNPv~---~~t~~~~k~~~~p 133 (308)
T 2d4a_B 61 SY-EDMRG--SDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKA-YAKDAIVVITTNPVD---AMTYVMYKKTGFP 133 (308)
T ss_dssp CG-GGGTT--CSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECCSSHH---HHHHHHHHHHCCC
T ss_pred CH-HHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH---HHHHHHHHhcCCC
Confidence 44 67877 89988554433 31 24577777754 678887777899986 33444555321
Q ss_pred CcEEEecCC
Q 009519 463 ENIVFASGS 471 (533)
Q Consensus 463 Grai~AtGS 471 (533)
-.-+|++|.
T Consensus 134 ~~rviG~gt 142 (308)
T 2d4a_B 134 RERVIGFSG 142 (308)
T ss_dssp GGGEEECCH
T ss_pred hhhEEEecc
Confidence 124777763
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.03 E-value=1.7 Score=41.60 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=58.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..+.. .|.. .+++++|++. .+...++...... ....++.++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~-----~g~~-----~~V~~~d~~~-----------~~~~~~~~~g~~~--~~~~~~~~~ 58 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRR-----SGFK-----GKIYGYDINP-----------ESISKAVDLGIID--EGTTSIAKV 58 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHH-----TTCC-----SEEEEECSCH-----------HHHHHHHHTTSCS--EEESCGGGG
T ss_pred cEEEEEecCHHHHHHHHHHHh-----cCCC-----cEEEEEeCCH-----------HHHHHHHHCCCcc--cccCCHHHH
Confidence 479999999999999998865 3432 3688887631 1111111100000 012357777
Q ss_pred hc-ccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VR-KVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~-~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++ . +|++| ++. +.-.++++++.+.....+..||.-+||-..
T Consensus 59 ~~~~--aDvVi-lav-p~~~~~~v~~~l~~~l~~~~iv~~~~~~~~ 100 (281)
T 2g5c_A 59 EDFS--PDFVM-LSS-PVRTFREIAKKLSYILSEDATVTDQGSVKG 100 (281)
T ss_dssp GGTC--CSEEE-ECS-CHHHHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred hcCC--CCEEE-EcC-CHHHHHHHHHHHHhhCCCCcEEEECCCCcH
Confidence 77 5 88877 443 333566777776543456667777887543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=82.00 E-value=0.76 Score=45.14 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=25.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-||+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~-----~G~-------~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK-----HGI-------KVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 589999999999999988865 465 56677653
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=81.80 E-value=5.3 Score=40.51 Aligned_cols=220 Identities=13% Similarity=0.142 Sum_probs=124.8
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHh-ccCceeccCc---chhHHHHHHHHHHHHHHhC--------------C-CCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDI---QGTAGVALAGLLGTVRAQG--------------L-SLTD 320 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr-~~~~~FnDDi---QGTaaV~LAgli~Alr~~g--------------~-~l~d 320 (533)
...|+. .|+.-=.+..|- . ++..+ .-+++.|--- +.+|=-+++.+++..|-.. . .-.+
T Consensus 57 ~~~~~Lk~I~~~~~G~d~i-d-~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~ 134 (324)
T 3evt_A 57 RPTNQLKFVQVISAGVDYL-P-LKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTST 134 (324)
T ss_dssp STTCCCCEEECSSSCCTTS-C-HHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCC
T ss_pred hhCCCceEEEECCcccccc-C-HHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCcc
Confidence 345765 666655555542 2 23333 3477877653 2344456777777765310 0 1234
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..- ........+ ...+|
T Consensus 135 l~gktvGIiGlG~IG~~vA~~l~~~-----G~-------~V~~~dr~~~------~~~~~~~~~-----------~~~~l 185 (324)
T 3evt_A 135 LTGQQLLIYGTGQIGQSLAAKASAL-----GM-------HVIGVNTTGH------PADHFHETV-----------AFTAT 185 (324)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESSCC------CCTTCSEEE-----------EGGGC
T ss_pred ccCCeEEEECcCHHHHHHHHHHHhC-----CC-------EEEEECCCcc------hhHhHhhcc-----------ccCCH
Confidence 4459999999999999999988754 44 6888887421 111110001 12468
Q ss_pred HHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcce
Q 009519 401 LEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENV 476 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv 476 (533)
.|+++. .|+++=.- ...+.|+++.++.|. +..++.=.|.-..--|-.-.+|++ +|+.-.|.=-=|++-
T Consensus 186 ~ell~~--aDvV~l~lPlt~~t~~li~~~~l~~mk----~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA~lDV~~~E 257 (324)
T 3evt_A 186 ADALAT--ANFIVNALPLTPTTHHLFSTELFQQTK----QQPMLINIGRGPAVDTTALMTALD--HHQLSMAALDVTEPE 257 (324)
T ss_dssp HHHHHH--CSEEEECCCCCGGGTTCBSHHHHHTCC----SCCEEEECSCGGGBCHHHHHHHHH--TTSCSEEEESSCSSS
T ss_pred HHHHhh--CCEEEEcCCCchHHHHhcCHHHHhcCC----CCCEEEEcCCChhhhHHHHHHHHH--hCCceEEEeCCCCCC
Confidence 899988 89987431 225889999999993 678888888755433444444544 455322210111111
Q ss_pred ecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhccc
Q 009519 477 DLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDN 526 (533)
Q Consensus 477 ~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v 526 (533)
..+ ....--+..|+.+-|=++-. ...-.+.|...+++-|.+..
T Consensus 258 Pl~--~~~pL~~~~nvilTPHia~~-----t~~~~~~~~~~~~~nl~~~l 300 (324)
T 3evt_A 258 PLP--TDHPLWQRDDVLITPHISGQ-----IAHFRATVFPIFAANFAQFV 300 (324)
T ss_dssp SCC--TTCGGGGCSSEEECCSCTTC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred CCC--CCChhhcCCCEEEcCccccC-----hHHHHHHHHHHHHHHHHHHH
Confidence 011 00112346789999987632 22234667777777666554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=81.57 E-value=0.61 Score=46.44 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=58.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc----cCCcCCccCCCCH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD----PGDFMGLREGASL 400 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~----~~~~~~~~~~~~L 400 (533)
||.|+|||+.|.++|..+... ++ -.+++++|.+- ++ +......+.+. ..... .....++
T Consensus 2 kI~VIGaG~vG~~la~~la~~-----~~-----g~~V~l~D~~~----~~--~~~~~~~l~~~~~~~~~~~~-i~~t~d~ 64 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEK-----QL-----ARELVLLDVVE----GI--PQGKALDMYESGPVGLFDTK-VTGSNDY 64 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSS----SH--HHHHHHHHHTTHHHHTCCCE-EEEESCG
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCh----hH--HHHHHHhHHhhhhcccCCcE-EEECCCH
Confidence 799999999999999887652 21 14799999852 11 11111011110 00000 0112445
Q ss_pred HHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+ ++. +|++|=+-..+ |- +-+++++.|++ +++..+|+-.|||..
T Consensus 65 ~~-l~~--aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~~ 122 (310)
T 1guz_A 65 AD-TAN--SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HSKNPIIIVVSNPLD 122 (310)
T ss_dssp GG-GTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCSSCEEEECCSSHH
T ss_pred HH-HCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCchH
Confidence 55 766 88877443222 32 11566677754 678888888999986
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.55 E-value=1.6 Score=41.62 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|+|..|..+|..|... |. +++++|++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g~-------~V~~~~~~ 32 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR-----GH-------YLIGVSRQ 32 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred EEEEEcCcHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 799999999999999988653 42 68888763
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=81.39 E-value=6.4 Score=39.95 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=88.1
Q ss_pred CCCCceEEEeCchhHHHHHHHHHH-HHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAV-QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~-~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
+|...+|.|+|.|..|..+|+.+. .. |+ +|+.+|+..- .....+ .+ .- ....
T Consensus 160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~-----G~-------~V~~~d~~~~------~~~~~~-~~---g~-----~~~~ 212 (348)
T 2w2k_A 160 NPRGHVLGAVGLGAIQKEIARKAVHGL-----GM-------KLVYYDVAPA------DAETEK-AL---GA-----ERVD 212 (348)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT-----CC-------EEEEECSSCC------CHHHHH-HH---TC-----EECS
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHhc-----CC-------EEEEECCCCc------chhhHh-hc---Cc-----EEeC
Confidence 344499999999999999999886 43 43 6888886421 111111 00 00 0113
Q ss_pred CHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCc
Q 009519 399 SLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~ 474 (533)
+|.|+++. .|+++=.- ...+.++++.++.|. +..||.-.|.-..--|-.-.+|++ +|+ |.+.|..+-
T Consensus 213 ~l~ell~~--aDvVil~vp~~~~t~~li~~~~l~~mk----~gailin~srg~~vd~~aL~~aL~--~~~-i~gaglDv~ 283 (348)
T 2w2k_A 213 SLEELARR--SDCVSVSVPYMKLTHHLIDEAFFAAMK----PGSRIVNTARGPVISQDALIAALK--SGK-LLSAGLDVH 283 (348)
T ss_dssp SHHHHHHH--CSEEEECCCCSGGGTTCBCHHHHHHSC----TTEEEEECSCGGGBCHHHHHHHHH--TTS-EEEEEESSC
T ss_pred CHHHHhcc--CCEEEEeCCCChHHHHHhhHHHHhcCC----CCCEEEECCCCchhCHHHHHHHHH--hCC-ceEEEeccC
Confidence 68898887 89887432 124788899999883 566777777643322333344444 455 433332221
Q ss_pred ceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcc
Q 009519 475 NVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCD 525 (533)
Q Consensus 475 pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~ 525 (533)
..+-.... .--+..|+.+-|=++-....+ ...|...+++.|.+.
T Consensus 284 ~~EP~~~~--~L~~~~nviltPH~~~~t~e~-----~~~~~~~~~~ni~~~ 327 (348)
T 2w2k_A 284 EFEPQVSK--ELIEMKHVTLTTHIGGVAIET-----FHEFERLTMTNIDRF 327 (348)
T ss_dssp TTTTSCCH--HHHTSSSEEECCSCTTCSHHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCCCCc--hhhcCCCEEEcCcCCCCCHHH-----HHHHHHHHHHHHHHH
Confidence 11100000 012356788888766322221 234455555555444
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=81.38 E-value=1.5 Score=42.06 Aligned_cols=104 Identities=23% Similarity=0.336 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
.|++.+++..+. +|.. |++|+|+|.+|..+|..|... |. +++++|++- ++ -+.+
T Consensus 102 ~g~~~~l~~~~~---~l~~-~v~iiG~G~~g~~~a~~l~~~-----g~-------~v~v~~r~~----~~------~~~l 155 (263)
T 2d5c_A 102 PGFLEALKAGGI---PLKG-PALVLGAGGAGRAVAFALREA-----GL-------EVWVWNRTP----QR------ALAL 155 (263)
T ss_dssp HHHHHHHHHTTC---CCCS-CEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSH----HH------HHHH
T ss_pred HHHHHHHHHhCC---CCCC-eEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEECCH----HH------HHHH
Confidence 478888887765 4556 999999999999998877642 42 588888631 11 1122
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCC--HHHHHHhhhcCCCCCeEEecCC
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFN--EEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft--eevv~~Ma~~~~erPIIFaLSN 445 (533)
++.... ...++.++ +. +|++|-+.. .+... ++.+. . +...+..+|+-++.
T Consensus 156 ~~~~~~-----~~~~~~~~-~~--~Divi~~tp-~~~~~~~~~~l~-~-~~l~~g~~viD~~~ 207 (263)
T 2d5c_A 156 AEEFGL-----RAVPLEKA-RE--ARLLVNATR-VGLEDPSASPLP-A-ELFPEEGAAVDLVY 207 (263)
T ss_dssp HHHHTC-----EECCGGGG-GG--CSEEEECSS-TTTTCTTCCSSC-G-GGSCSSSEEEESCC
T ss_pred HHHhcc-----chhhHhhc-cC--CCEEEEccC-CCCCCCCCCCCC-H-HHcCCCCEEEEeec
Confidence 221000 01346666 55 899997665 33221 01221 1 11345668887764
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=81.25 E-value=1.6 Score=41.84 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.8
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (533)
.||.|+|+|..|..+|..|..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~ 24 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLAR 24 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHh
Confidence 489999999999999998865
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=81.22 E-value=3.2 Score=36.65 Aligned_cols=98 Identities=26% Similarity=0.326 Sum_probs=56.6
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.+|+|.|| |-.|..+++.|++ .| .++++++++.- ....+...+..+..-+ ..+..++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~-----~g-------~~V~~~~r~~~---~~~~~~~~~~~~~~~D-----~~~~~~~~~ 63 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQ-----AG-------YEVTVLVRDSS---RLPSEGPRPAHVVVGD-----VLQAADVDK 63 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH-----TT-------CEEEEEESCGG---GSCSSSCCCSEEEESC-----TTSHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHH-----CC-------CeEEEEEeChh---hcccccCCceEEEEec-----CCCHHHHHH
Confidence 68999998 8888888877765 34 26888887521 0011101111111110 012345888
Q ss_pred HhcccCCcEEEEeccCCCC---------CCHHHHHHhhhcCCCCCeEEecC
Q 009519 403 VVRKVKPHVLLGLSGVGGV---------FNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~---------Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+++. +|++|=+.+.... .+..+++.|.+ ..-+.|||.=|
T Consensus 64 ~~~~--~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~v~~Ss 111 (206)
T 1hdo_A 64 TVAG--QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKA-HGVDKVVACTS 111 (206)
T ss_dssp HHTT--CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHH-HTCCEEEEECC
T ss_pred HHcC--CCEEEECccCCCCCCccchHHHHHHHHHHHHHH-hCCCeEEEEee
Confidence 8886 8999977664321 25677888854 33456787544
|
| >3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=80.91 E-value=1.7 Score=46.11 Aligned_cols=196 Identities=14% Similarity=0.185 Sum_probs=107.6
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEEEec--------------------CceeeccCCCCCCcccccchhhhhHhh--
Q 009519 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTD--------------------GSRILGLGDLGVQGIGIPIGKLDVYVA-- 206 (533)
Q Consensus 149 Glyis~~d~~~i~~~l~n~p~~~v~viVVTD--------------------G~rILGLGDlG~~Gm~I~~GKl~LY~a-- 206 (533)
|.|++..|...+..+|+.. +++++++.| |+.+=-+-++|-.-.-|.+++...+++
T Consensus 177 G~~~~~~D~~eik~lL~~~---Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~~~ei~~~~~A~~ni~~~~~~~~~A~~ 253 (458)
T 3pdi_B 177 SANLTPGDLEYIAESIESF---GLRPLLIPDLSGSLDGHLDENRFNALTTGGLSVAELATAGQSVATLVVGQSLAGAADA 253 (458)
T ss_dssp CTTCCHHHHHHHHHHHHTT---TCEEEEESCHHHHSSSCCCSSCCTTCCSCSBCHHHHGGGSSCSCEEEESGGGHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHc---CCEEEEecCccccccCccccccccccCCCCCCHHHHHhhhhCcEEEEecHHHHHHHHH
Confidence 7777767777888888854 788888854 445555555665555666676654432
Q ss_pred ---hcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHH
Q 009519 207 ---AAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLE 283 (533)
Q Consensus 207 ---~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ 283 (533)
=-|+. .-.+| ..+|+ +-.|+|+..+.+.+.. .. + +.++
T Consensus 254 Le~~~GiP-~~~~~----------------~p~G~-----------~~T~~~l~~la~~~g~---~~-----~---~~i~ 294 (458)
T 3pdi_B 254 LAERTGVP-DRRFG----------------MLYGL-----------DAVDAWLMALAEISGN---PV-----P---DRYK 294 (458)
T ss_dssp HHHHSCCC-EEEEC----------------CSCHH-----------HHHHHHHHHHHHHHSS---CC-----C---HHHH
T ss_pred HHHHHCCC-EEecC----------------CCcCH-----------HHHHHHHHHHHHHHCC---ch-----H---HHHH
Confidence 13554 11111 12222 3478888888887732 11 1 2344
Q ss_pred HHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 009519 284 RYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (533)
Q Consensus 284 ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~l 363 (533)
+.|.+ ++.++.-....|.. .|++|+|.+.-..++++.|.+ .|+. -+.+
T Consensus 295 ~er~r------------------~~~~~~d~~~~l~G---krv~i~~~~~~~~~l~~~L~e-----lGm~------vv~~ 342 (458)
T 3pdi_B 295 RQRAQ------------------LQDAMLDTHFMLSS---ARTAIAADPDLLLGFDALLRS-----MGAH------TVAA 342 (458)
T ss_dssp HHHHH------------------HHHHHHHHHHHHTT---CEEEEECCHHHHHHHHHHHHT-----TTCE------EEEE
T ss_pred HHHHH------------------HHHHHHHHHHhcCC---CEEEEECCcHHHHHHHHHHHH-----CCCE------EEEE
Confidence 44432 12222222233445 899999999999999998854 4663 2222
Q ss_pred EeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeE
Q 009519 364 LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAI 440 (533)
Q Consensus 364 vD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPII 440 (533)
.-.. ..+.+.... ... -+. .+...|++.++..+||.+||-|- .+.+.+.+ .-|.|
T Consensus 343 ~~~~-----~~~~~~~~~--~~~---v~~--~D~~~le~~i~~~~pDllig~~~-----~~~~a~k~-----gip~~ 397 (458)
T 3pdi_B 343 VVPA-----RAAALVDSP--LPS---VRV--GDLEDLEHAARAGQAQLVIGNSH-----ALASARRL-----GVPLL 397 (458)
T ss_dssp EESS-----CCSCCTTTT--SSC---EEE--SHHHHHHHHHHHHTCSEEEECTT-----HHHHHHHT-----TCCEE
T ss_pred EECC-----CChhhhhCc--cCc---EEe--CCHHHHHHHHHhcCCCEEEEChh-----HHHHHHHc-----CCCEE
Confidence 2111 111121110 000 000 12234788899999999999663 34455555 35655
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.69 E-value=1.5 Score=46.76 Aligned_cols=36 Identities=8% Similarity=-0.179 Sum_probs=26.6
Q ss_pred ecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 485 HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 485 ~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
.|++.-|-+++|.+.=++.++...-++.+.+..|.+
T Consensus 232 ~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 232 CKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 588888888888888777777344477777777655
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=80.21 E-value=1.6 Score=44.79 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCC
Q 009519 321 FADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 321 l~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
+...||.|+|| |..|..+|..++. .|+. ..+.++|.+-=..++ ..+|.+. .|.. ... ....
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~-----~g~~-----~evvLiDi~~~k~~g~a~DL~~~--~~~~--~~i---~~t~ 68 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAM-----MRLT-----PNLCLYDPFAVGLEGVAEEIRHC--GFEG--LNL---TFTS 68 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHH-----TTCC-----SCEEEECSCHHHHHHHHHHHHHH--CCTT--CCC---EEES
T ss_pred cCCCEEEEECCCChHHHHHHHHHHh-----cCCC-----CEEEEEeCCchhHHHHHHhhhhC--cCCC--Cce---EEcC
Confidence 44589999998 9999999965544 3552 369999973110000 0123221 2211 111 1235
Q ss_pred CHHHHhcccCCcEEEEecc---CCCC-----------CCHHHHHHhhhcCCCCCe-EEecCCCCCcccCCHHHHhccc
Q 009519 399 SLLEVVRKVKPHVLLGLSG---VGGV-----------FNEEVLKAMRESDSVKPA-IFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~---~~g~-----------Fteevv~~Ma~~~~erPI-IFaLSNPt~~aE~tpe~A~~wt 461 (533)
++.+++++ +|++|=+.+ .+|- .-+++++.+.+ ++++-+ |+-.|||.. +...-+++.+
T Consensus 69 d~~~al~d--ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~-~~p~a~~vlvvsNPvd---~~t~i~~k~s 140 (343)
T 3fi9_A 69 DIKEALTD--AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKS-YCPDCKHVIIIFNPAD---ITGLVTLIYS 140 (343)
T ss_dssp CHHHHHTT--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHH-HCTTCCEEEECSSSHH---HHHHHHHHHH
T ss_pred CHHHHhCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hccCcEEEEEecCchH---HHHHHHHHHc
Confidence 78899998 899874433 2332 23456666653 778885 888999974 4444455543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=80.07 E-value=1.4 Score=44.16 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=73.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||+.|..+|-.|+. .|+- ..++++|.+-=..++. .+|.+. .++....-.. ..+..+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~-----~~~~-----~ei~L~Di~~~~~~g~~~dl~~~-~~~~~~~~~v-----~~~~~~ 70 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVN-----QSIV-----DELVIIDLDTEKVRGDVMDLKHA-TPYSPTTVRV-----KAGEYS 70 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----HCSC-----SEEEEECSCHHHHHHHHHHHHHH-GGGSSSCCEE-----EECCGG
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCChhHhhhhhhhHHhh-hhhcCCCeEE-----EeCCHH
Confidence 699999999999998887654 2432 4799999751000000 122222 2332111000 113477
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai 466 (533)
++++ +|++|=+.+.+ |- +=+++++.|.+ +++.-+|+-.|||.. ...+-+++.+ .-.-+
T Consensus 71 a~~~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~viv~tNPv~---~~t~~~~k~~~~p~~rv 144 (317)
T 3d0o_A 71 DCHD--ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMA-SKFDGIFLVATNPVD---ILAYATWKFSGLPKERV 144 (317)
T ss_dssp GGTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHH---HHHHHHHHHHCCCGGGE
T ss_pred HhCC--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCcHH---HHHHHHHHHhCCCHHHE
Confidence 7887 89988444433 31 22456666654 789999999999986 4455555543 11246
Q ss_pred EecCCC
Q 009519 467 FASGSP 472 (533)
Q Consensus 467 ~AtGSP 472 (533)
|.+|.-
T Consensus 145 iG~gt~ 150 (317)
T 3d0o_A 145 IGSGTI 150 (317)
T ss_dssp EECTTH
T ss_pred EecCcc
Confidence 777653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=80.05 E-value=1.4 Score=42.60 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=56.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh-hhhccccccCC-cCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP-AAAPFAKDPGD-FMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~-~k~~~A~~~~~-~~~~~~~~~L~ 401 (533)
.||.|+|+|+.|..+|..|.+......|. .+++++|+..-+ +.+.. ........... ........+-.
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~------~~V~~~~r~~~~----~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 78 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGL------LEVSWIARGAHL----EAIRAAGGLRVVTPSRDFLARPTCVTDNP 78 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSS------EEEEEECCHHHH----HHHHHHTSEEEECSSCEEEECCSEEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCC------CCEEEEEcHHHH----HHHHhcCCeEEEeCCCCeEEecceEecCc
Confidence 38999999999999999987652211130 268888762110 00111 00000000000 00000011223
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++++. +|++| ++..+. -.+++++.++....+..+|..++|...
T Consensus 79 ~~~~~--~D~vi-l~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~~ 121 (317)
T 2qyt_A 79 AEVGT--VDYIL-FCTKDY-DMERGVAEIRPMIGQNTKILPLLNGAD 121 (317)
T ss_dssp HHHCC--EEEEE-ECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSSS
T ss_pred cccCC--CCEEE-EecCcc-cHHHHHHHHHhhcCCCCEEEEccCCCC
Confidence 45554 78766 443233 358898888643344557777888754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 533 | ||||
| d1gq2a2 | 257 | c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent | 1e-129 | |
| d1pj3a2 | 259 | c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent | 1e-129 | |
| d1o0sa2 | 294 | c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent | 1e-129 | |
| d1pj3a1 | 294 | c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent | 3e-54 | |
| d1o0sa1 | 308 | c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent | 5e-54 | |
| d1gq2a1 | 298 | c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent | 5e-52 | |
| d1vl6a1 | 222 | c.2.1.7 (A:155-376) Malate oxidoreductase (malic e | 5e-30 | |
| d1vl6a2 | 154 | c.58.1.3 (A:1-154) Malate oxidoreductase (malic en | 4e-06 |
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 376 bits (967), Expect = e-129
Identities = 125/267 (46%), Positives = 175/267 (65%), Gaps = 11/267 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQ 89
K+G ++L DP NK F L ER +L + GLLPP + + Q +++F L +
Sbjct: 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSD---- 56
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L ++ +L L DRNE L+Y+VL +I+ F PI+YTPTVGL CQ+Y FRRPRG
Sbjct: 57 ------LDRYILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + +M+ +WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A G
Sbjct: 111 LFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268
+ P + LPVMLDVGT+N+ LL+D LY+GLR R+ G+ Y ++DEFMEAV +R+ ++
Sbjct: 171 VKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDD 295
QFEDF AF L +YR ++C FNDD
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDD 257
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Score = 376 bits (967), Expect = e-129
Identities = 120/269 (44%), Positives = 173/269 (64%), Gaps = 11/269 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTE 87
+ ++G ++ +P NK F L ER LGL+GLLPP++ + + Q RF + + +
Sbjct: 1 IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSP-- 58
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 59 --------LEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRP 110
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G+GIP+GKL +Y A
Sbjct: 111 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 170
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKA 266
AGI P R LPV +DVGT+N LL+D Y+GL Q R ++Y ++DEFM+A+ R+
Sbjct: 171 AGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNT 230
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDD 295
++QFEDF AF L +YR+++C FNDD
Sbjct: 231 LIQFEDFGNHNAFRFLRKYREKYCTFNDD 259
|
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Score = 376 bits (967), Expect = e-129
Identities = 125/276 (45%), Positives = 176/276 (63%), Gaps = 13/276 (4%)
Query: 23 PGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSL 82
P KR ++L +P NK GF L ER LGL GLLPP ++ EQQ R + R
Sbjct: 29 PERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQ 88
Query: 83 EKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSG 142
+ LA++ L+ L DRNE L+YRV+ D++K+ PI+YTPTVGL CQN+
Sbjct: 89 PND----------LARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGY 138
Query: 143 LFRRPRGMYFSAKDK--GEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGK 200
++R+P+G+Y + D ++ ++ NW + V IV+TDG RILGLGDLG GIGIP+GK
Sbjct: 139 IYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGK 198
Query: 201 LDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVH 260
L +YVA G+ P+ LPV+LDVGTNN LL D Y+GLR R+ G++Y +++D FM+A
Sbjct: 199 LALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACT 258
Query: 261 ARW-PKAIVQFEDFQMKWAFETLERYRKRFCMFNDD 295
++ K ++QFEDF AF L++Y+ ++ MFNDD
Sbjct: 259 KKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Score = 182 bits (464), Expect = 3e-54
Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 8/225 (3%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
IQGTA VALAGLL + ++ KI+ +GAG A LG+ + V + G ++
Sbjct: 1 IQGTAAVALAGLLAAQKVIS---KPISEHKILFLGAGEAALGIANLIVMSMVE-NGLSEQ 56
Query: 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415
A+ K ++ DK GL+ K RK + + + + V +KP ++G+
Sbjct: 57 EAQKKIWMFDKYGLLVKGRKAKID---SYQEPFTHSAPESIPDTFEDAVNILKPSTIIGV 113
Query: 416 SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475
+G G +F +V++AM S + +P IFA+SNPT AECTA +A+ +FASGSPF
Sbjct: 114 AGAGRLFTPDVIRAMA-SINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGP 172
Query: 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
V L +G++ Q NN+Y+FPG+ L +L R I+D + +AA+
Sbjct: 173 VKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 217
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Score = 182 bits (464), Expect = 5e-54
Identities = 94/225 (41%), Positives = 130/225 (57%), Gaps = 12/225 (5%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
IQGTA V +AGLL R + +K + GAG+A G+ +M V G +
Sbjct: 1 IQGTASVIVAGLLTCTRVTK---KLVSQEKYLFFGAGAASTGIAEMIVHQMQNE-GISKE 56
Query: 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415
A N+ +L+D DGL+TK RK ++P FAKD + E S+LEV+R +P L+G
Sbjct: 57 EACNRIYLMDIDGLVTKNRKEMNPRHVQFAKD------MPETTSILEVIRAARPGALIGA 110
Query: 416 SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475
S V G FNEEV++AM E + +P IFA+SNPT AECTA +A+ ++ASGSPF N
Sbjct: 111 STVRGAFNEEVIRAMAEINE-RPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPN 169
Query: 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
+L NG Q NN Y+FPG+ LGT+L R + + + AA+
Sbjct: 170 FEL-NGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAK 213
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 177 bits (449), Expect = 5e-52
Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 11/225 (4%)
Query: 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355
IQGTA VA+AGLL +R +D ++ GAG A LG+ + V A + G +
Sbjct: 1 IQGTASVAVAGLLAALRITK---NRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKE 56
Query: 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415
A + +++D GLI K R +L P FA + + L + +V+ +KP VL+G+
Sbjct: 57 EAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLED------IVKDIKPTVLIGV 110
Query: 416 SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475
+ +GG F +++L+ M + + +P IFA+SNPT AECTA +K+ +FASGSPF+
Sbjct: 111 AAIGGAFTQQILQDMA-AFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDP 169
Query: 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
V L +G+ + Q NN Y+FPG+ LG + G + I D + AE
Sbjct: 170 VTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAE 214
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (288), Expect = 5e-30
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 38/226 (16%)
Query: 295 DIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND 354
D QGTA V A L ++ + + K+VV G G+AG ++K + +
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEE---VKVVVNGIGAAGYNIVKFLLDLGVKN----- 52
Query: 355 AFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG 414
+D+ G++ + G ++ ++
Sbjct: 53 ------VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSG----DLETALEGADFFI 102
Query: 415 LSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474
G + E +K M KP IFA++NP + A + A+G
Sbjct: 103 GVSRGNILKPEWIKKMSR----KPVIFALANPVPEIDPELA----REAGAFIVATGRSD- 153
Query: 475 NVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520
H NQ NN+ FPGI G + ++ + ML A E
Sbjct: 154 ----------HPNQVNNLLAFPGIMKGAVEKRSKITKN-MLLSAVE 188
|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (106), Expect = 4e-06
Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 52/175 (29%)
Query: 118 IDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVL 177
+ + + ++YTP V V + + +K + + +N A V+
Sbjct: 22 KVDRETLS-LLYTPGVADVARACA-----------EDPEKTYVYTSRWNTVA------VV 63
Query: 178 TDGSRILGLGDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLY 235
+DGS +LGLG++G G +P+ GK ++ A A I+ P+ L
Sbjct: 64 SDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLSE------------- 106
Query: 236 LGLRQPRLEGEEYLSIVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKRF 289
S ++ + V + P + ED F L+R +
Sbjct: 107 --------------SEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEEM 147
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 533 | |||
| d1gq2a2 | 257 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1pj3a2 | 259 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1o0sa2 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 100.0 | |
| d1vl6a2 | 154 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 100.0 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.94 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.7 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.63 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.23 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.86 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.83 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.74 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.64 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 95.6 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.59 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.58 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.09 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.89 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 94.81 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.79 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.97 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.89 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.77 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 93.76 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 93.68 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.64 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.61 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.54 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.48 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 93.45 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.44 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.39 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.37 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.14 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 92.78 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.78 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.63 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 92.35 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.34 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 92.2 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.11 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 92.01 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 91.93 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.93 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 91.45 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.41 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.32 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 91.19 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 91.08 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 90.79 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 90.72 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.28 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 90.28 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.27 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.22 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.06 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 89.8 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.6 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 89.39 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.95 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 88.92 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 88.9 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.49 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.4 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 87.46 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 86.98 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 86.92 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 86.8 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.46 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.21 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 86.2 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.04 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 86.04 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 85.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.82 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 85.81 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 85.68 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.39 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 85.35 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.11 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 84.96 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 84.83 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 84.83 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 84.73 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.66 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 84.5 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 84.49 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 84.13 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 83.8 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 83.46 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 83.44 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 82.62 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 82.27 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 81.74 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 81.73 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 80.96 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 80.92 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 80.84 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 80.6 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 80.55 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 80.5 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 80.32 |
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=3.1e-115 Score=857.46 Aligned_cols=256 Identities=49% Similarity=0.967 Sum_probs=254.1
Q ss_pred cCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhccc
Q 009519 30 KRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRN 109 (533)
Q Consensus 30 ~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~N 109 (533)
++|.++|++|.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++|
T Consensus 1 krG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~----------~~l~Ky~yL~~L~~~N 70 (257)
T d1gq2a2 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLT----------SDLDRYILLMSLQDRN 70 (257)
T ss_dssp CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHC
T ss_pred CChHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred chhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCC
Q 009519 110 ETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDL 189 (533)
Q Consensus 110 e~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDl 189 (533)
|+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||+|||||||+
T Consensus 71 e~LFY~ll~~~~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i~~il~nwp~~~V~~iVVTDG~rILGlGD~ 150 (257)
T d1gq2a2 71 EKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDL 150 (257)
T ss_dssp HHHHHHHHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCC
T ss_pred hHHHHHHHHHHHHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHHHHHHHhCCCCCeeEEEEecCceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC-Ccee
Q 009519 190 GVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268 (533)
Q Consensus 190 G~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P-~~~I 268 (533)
|++|||||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|+|||+||||||+||+++|| +++|
T Consensus 151 G~~Gm~I~~gKl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p~~~~i 230 (257)
T d1gq2a2 151 GCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230 (257)
T ss_dssp GGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CcCccchhhhHHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred eeecCCCchHHHHHHHHhccCceeccC
Q 009519 269 QFEDFQMKWAFETLERYRKRFCMFNDD 295 (533)
Q Consensus 269 ~~EDf~~~~af~iL~ryr~~~~~FnDD 295 (533)
|||||+++|||++|+|||+++||||||
T Consensus 231 ~~EDf~~~na~~~L~~yr~~~~~FNDD 257 (257)
T d1gq2a2 231 QFEDFANANAFRLLHKYRNKYCTFNDD 257 (257)
T ss_dssp EECSCCHHHHHHHHHHHTTTSEEEETT
T ss_pred ehhhcCCchHHHHHHHHccCCCccCCC
Confidence 999999999999999999999999999
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-115 Score=855.55 Aligned_cols=257 Identities=47% Similarity=0.917 Sum_probs=254.9
Q ss_pred ccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcc
Q 009519 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (533)
Q Consensus 29 ~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~ 108 (533)
+.+|.++|++|.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++
T Consensus 2 ~~rG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~----------t~l~Ky~yL~~L~~~ 71 (259)
T d1pj3a2 2 KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT----------SPLEKYIYIMGIQER 71 (259)
T ss_dssp CCCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCC----------SHHHHHHHHHHHHTT
T ss_pred CchHHHHhcCCCccCcCCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCC
Q 009519 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (533)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (533)
||+|||+++++|++||||||||||||+|||+||++||+|||||||++|+|+|+++++|||.++|++||||||+|||||||
T Consensus 72 Ne~LFY~ll~~~~~e~mPIvYTPTVg~Ac~~ys~~~r~prGlyis~~d~g~i~~il~nwp~~~v~~ivVTDG~rILGlGD 151 (259)
T d1pj3a2 72 NEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGD 151 (259)
T ss_dssp CHHHHHHHHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCC
T ss_pred cHHHHHHHHHHHHHHhCCeecCCchHHHHHHHHHhhcCccceEecccchhHHHHHHHhCCccCceEEEEecCceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CCce
Q 009519 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (533)
Q Consensus 189 lG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P~~~ 267 (533)
+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+|+||||+||+++| |+++
T Consensus 152 lG~~Gm~I~~gKl~lyta~~Gi~P~~~lPv~lDvGTnNe~LL~DP~YlG~R~~R~~g~~Yd~fidefv~av~~~~gp~~l 231 (259)
T d1pj3a2 152 LGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTL 231 (259)
T ss_dssp CGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred cCcchhhHHHhHHHHHHHcCCCChhhccceEEecCCcHHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhcCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred eeeecCCCchHHHHHHHHhccCceeccC
Q 009519 268 VQFEDFQMKWAFETLERYRKRFCMFNDD 295 (533)
Q Consensus 268 I~~EDf~~~~af~iL~ryr~~~~~FnDD 295 (533)
||||||+++|||++|+|||+++||||||
T Consensus 232 i~~EDf~~~na~~~L~~yr~~~~~fNDD 259 (259)
T d1pj3a2 232 IQFEDFGNHNAFRFLRKYREKYCTFNDD 259 (259)
T ss_dssp EEECSCCHHHHHHHHHHHTTTSSEEEHH
T ss_pred EehhhcCCchHHHHHHHhccCCCccCCC
Confidence 9999999999999999999999999998
|
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=100.00 E-value=1.5e-113 Score=856.93 Aligned_cols=259 Identities=48% Similarity=0.924 Sum_probs=255.7
Q ss_pred eeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhh
Q 009519 27 MVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLH 106 (533)
Q Consensus 27 ~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~ 106 (533)
....+|.++|++|++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||
T Consensus 33 ~~~~rG~~lL~~p~lNKGtAFt~~ER~~l~L~GLLP~~v~tle~Qv~R~~~~~~~~~----------t~l~Ky~~L~~L~ 102 (294)
T d1o0sa2 33 TPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQP----------NDLARYIQLDGLQ 102 (294)
T ss_dssp CCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSS----------SHHHHHHHHHHHH
T ss_pred CccccHHHHhcCCcccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCCh--hhHHHHHhcCCCCCeeEEEEecCceee
Q 009519 107 DRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDK--GEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (533)
Q Consensus 107 ~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~--~~i~~~l~n~p~~~v~viVVTDG~rIL 184 (533)
++||+|||+++++|++||||||||||||+||++||++||+|||||||++|+ |+|.++++|||.++|++||||||+|||
T Consensus 103 ~~Ne~LFYrll~~h~ee~mPiVYTPTVG~Ac~~ys~~fr~prGlyisi~d~~~g~i~~il~nwp~~~V~~iVVTDG~rIL 182 (294)
T d1o0sa2 103 DRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERIL 182 (294)
T ss_dssp HHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSCBT
T ss_pred HhCchhhHHHHHhHHHHhcCcccCccHHHHHHHHHhhhcCcceeEEeccccccchHHHHHhcCCcccceEEEEecCccee
Confidence 999999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 009519 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (533)
Q Consensus 185 GLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~- 263 (533)
||||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+||||||+||+++|
T Consensus 183 GlGDlG~~Gm~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYlG~R~~R~~g~~Yd~fidefv~av~~~fg 262 (294)
T d1o0sa2 183 GLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYG 262 (294)
T ss_dssp TTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcCcccchhhhhHHHHHHHhcCCChhhccceEeecCCChHHhhcCcccccccCCCCCchHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCchHHHHHHHHhccCceeccC
Q 009519 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDD 295 (533)
Q Consensus 264 P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDD 295 (533)
|+++||||||+++|||++|+|||+++||||||
T Consensus 263 p~~li~~EDf~~~nA~~iL~kyr~~~~~FNDD 294 (294)
T d1o0sa2 263 QKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294 (294)
T ss_dssp TTCEEEECSCCHHHHHHHHHHHTTTSEEEEHH
T ss_pred CCCEEeehhCCChhHHHHHHHhcccCCccCCC
Confidence 99999999999999999999999999999998
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=7.1e-82 Score=635.84 Aligned_cols=225 Identities=38% Similarity=0.639 Sum_probs=217.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||++|+.+|+ ++|++++||+++|||||++|||+++|+
T Consensus 1 IQGTaaV~lAglinAlki~gk~l~d---~kiV~~GAGsAg~gia~~l~~~~~-~~G~~~~~a~~~i~l~D~kGlv~~~R~ 76 (298)
T d1gq2a1 1 IQGTASVAVAGLLAALRITKNRLSD---HTVLFQGAGEAALGIANLIVMAMQ-KEGVSKEEAIKRIWMVDSKGLIVKGRA 76 (298)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCGGG---CCEEEECCSHHHHHHHHHHHHHHH-HHTCCHHHHHTTEEEEETTEECBTTCS
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHH---cEEEEECccHHHHHHHHHHHHHHH-HcCCChhhccceEEEEeCCCcccCCCc
Confidence 8999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
+++++|++|+++.++ ..+|.|+++.+|||+|||+|+++|+||+||||.|++ +|+|||||||||||+++||+||
T Consensus 77 ~l~~~k~~~a~~~~~------~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~-~~~~PIIFaLSNPt~~~E~~~~ 149 (298)
T d1gq2a1 77 SLTPEKEHFAHEHCE------MKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAA-FNKRPIIFALSNPTSKAECTAE 149 (298)
T ss_dssp SCCTTGGGGCBSCCC------CCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHH-HCSSCEEEECCSSGGGCSSCHH
T ss_pred ccCHHHHHHHHHhhh------hhhhHHHhhccChheeEecccccCcCCHHHHHHHHh-hCCCCEEEEccCCCCcCCCCHH
Confidence 999999999998653 468999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 456 ~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
|||+||+|||||||||||+||++.+||+++||||||+|+|||||||++++||++|||+||++||++||++++++++
T Consensus 150 ~a~~wt~G~ai~AsGspf~pv~~~~Grs~~pnQ~NN~~~FPGiglGal~~~A~~Itd~M~~aAA~alA~~v~~~~l 225 (298)
T d1gq2a1 150 QLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENL 225 (298)
T ss_dssp HHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhhhcccceEEeecCCCCCeEecCCeEEecCCCchhhhhhhHHHHHHHhhhhhCCHHHHHHHHHHHHHhcchhcC
Confidence 9999999999999999999999988999999999999999999999999999999999999999999999998654
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-81 Score=632.56 Aligned_cols=227 Identities=37% Similarity=0.649 Sum_probs=217.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+||||+||+|++||+|+| |||||+|||+||+|||++|+.+|+ ++|++++||++||||+|++|||+++|+
T Consensus 1 IqGTa~V~lAglinAlki~gk~l~d---~kiv~~GAGsAg~gia~ll~~~~~-~~g~~~~~a~~~i~lvD~~Glv~~~r~ 76 (294)
T d1pj3a1 1 IQGTAAVALAGLLAAQKVISKPISE---HKILFLGAGEAALGIANLIVMSMV-ENGLSEQEAQKKIWMFDKYGLLVKGRK 76 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGG---CCEEEECCSHHHHHHHHHHHHHHH-HTTCCHHHHHHTEEEEETTEECBTTCS
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHH---cEEEEECccHHHHHHHHHHHHHHH-hcCCchhhccccEEEEeCCCCccCCCC
Confidence 7999999999999999999999999 999999999999999999999999 799999999999999999999999994
Q ss_pred -CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCH
Q 009519 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 454 (533)
Q Consensus 376 -~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tp 454 (533)
.++++|++|+++..+ ...++|+|+|+.+|||+|||+|+++|+|||||||+|++ +|+|||||||||||+++||+|
T Consensus 77 ~~~~~~k~~~a~~~~~----~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~-~~~~PIIFaLSNPt~~~e~~~ 151 (294)
T d1pj3a1 77 AKIDSYQEPFTHSAPE----SIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMAS-INERPVIFALSNPTAQAECTA 151 (294)
T ss_dssp SCCCTTTGGGCBCCCS----SCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHH-HCSSCEEEECCSSGGGCSCCH
T ss_pred cccHHHHHHhhccccc----cchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHh-cCCCcEEEEccCCCCcCCcCH
Confidence 689999999997543 23478999999999999999999999999999999975 999999999999999999999
Q ss_pred HHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 455 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 455 e~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
||||+||+|||||||||||+||+|.+||+++||||||+|+|||||||++++||++|||+|+++||++||++++++++
T Consensus 152 ~~a~~~t~grai~asGspf~~v~~~~Gr~~~pnQ~NN~~iFPGiglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l 228 (294)
T d1pj3a1 152 EEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEEL 228 (294)
T ss_dssp HHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhccCceEeecCCccCCeEeCCCcEecCCCCceeccccchhhHHHhcCCCCcCHHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999988654
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=100.00 E-value=5.8e-81 Score=631.08 Aligned_cols=225 Identities=41% Similarity=0.667 Sum_probs=217.4
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||++|+++|+ ++|++++||++|||+||++|||+++|+
T Consensus 1 IQGTa~V~lAglinAlki~gk~l~d---~kivi~GAGaAg~gia~~l~~~~~-~~G~~~~~a~~~i~~vD~~Glv~~~r~ 76 (308)
T d1o0sa1 1 IQGTASVIVAGLLTCTRVTKKLVSQ---EKYLFFGAGAASTGIAEMIVHQMQ-NEGISKEEACNRIYLMDIDGLVTKNRK 76 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGG---CCEEEECCSHHHHHHHHHHHHHHH-TTTCCHHHHHHTEEEEETTEECBTTCS
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHH---cEEEEECcCHHHHHHHHHHHHHHH-hcCCchhhhhceEEEEeCCCCccCCCc
Confidence 7999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
+++++|++||++.++ ..+|.|+|+.+|||+|||+|+++|+||+||||+|++ +|+|||||||||||+++||+||
T Consensus 77 d~~~~k~~~a~~~~~------~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPtp~~E~~~e 149 (308)
T d1o0sa1 77 EMNPRHVQFAKDMPE------TTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAE-INERPIIFALSNPTSKAECTAE 149 (308)
T ss_dssp SCCGGGTTTCBSSCC------CCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHH-HCSSCEEEECCSSGGGCSSCHH
T ss_pred ccCHHHHHHHHhccc------CCcHHHHHhccccccEEecccccCCCCHHHHHHHHh-hCCCcEEEEccCCCCCCCCCHH
Confidence 999999999998653 468999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 456 ~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|||+||+|++|||||||||||++ +||+++||||||+|+|||||||++++||++|||+||++||++||+++++++++
T Consensus 150 da~~~t~G~ai~AtGSpfp~V~~-~Gr~~~p~Q~NN~liFPGIglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l~ 225 (308)
T d1o0sa1 150 EAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLK 225 (308)
T ss_dssp HHHHTTTSCCEEEESSCCCCEEE-TTEEECCEECCGGGTHHHHHHHHHHHTBSCCCHHHHHHHHHHHHHTCCHHHHT
T ss_pred HHHhhccCcEEEecCCCCCCeee-cCceecccccceeeeccchheeeeecccccCCHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999999999 59999999999999999999999999999999999999999999999886543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.7e-64 Score=485.74 Aligned_cols=196 Identities=30% Similarity=0.440 Sum_probs=177.1
Q ss_pred CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC
Q 009519 295 DIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER 374 (533)
Q Consensus 295 DiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r 374 (533)
||||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||++ +|+++||++|++|||+++|
T Consensus 1 DiQGTaaV~LAgll~a~~~~g~~l~d---~riv~~GAGsAg~gia~~l~~-----------~~~~~i~~~D~~GLi~~~r 66 (222)
T d1vl6a1 1 DQQGTAVVVSAAFLNALKLTEKKIEE---VKVVVNGIGAAGYNIVKFLLD-----------LGVKNVVAVDRKGILNEND 66 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTT---CEEEEECCSHHHHHHHHHHHH-----------HTCCEEEEEETTEECCTTS
T ss_pred CCchHHHHHHHHHHHHHHHhCCChhh---cEEEEEChHHHHHHHHHHHHH-----------hcccceEeecceeEEEcCc
Confidence 89999999999999999999999999 999999999999999999975 3568999999999999998
Q ss_pred C--CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccC
Q 009519 375 K--NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (533)
Q Consensus 375 ~--~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~ 452 (533)
+ +++++|++|++..+.. ....+|.++|+. +|+++|+|+ +|+|++|++++| ++|||||||||||+ ||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~g--~~~~~g~~~-~~~~~~e~m~~~----~~rPIIFpLSNPt~--~~ 134 (222)
T d1vl6a1 67 PETCLNEYHLEIARITNPE---RLSGDLETALEG--ADFFIGVSR-GNILKPEWIKKM----SRKPVIFALANPVP--EI 134 (222)
T ss_dssp GGGCSSHHHHHHHHTSCTT---CCCSCHHHHHTT--CSEEEECSC-SSCSCHHHHTTS----CSSCEEEECCSSSC--SS
T ss_pred ccccccHHHHHHHhhhcch---hhhcchHhhccC--cceeccccc-cccccHHHHhhc----CCCCEEEecCCCcc--ch
Confidence 4 7999999999976542 245789999988 899999996 899999988877 58999999999999 55
Q ss_pred CHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 453 TAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 453 tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
+|++| ||+|++|||||||| +|+||||+|||||||||+++++++ |||+||++||++||+++++++
T Consensus 135 e~~~a--~~~G~ai~AtGsp~-----------~p~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~~~~~~ 198 (222)
T d1vl6a1 135 DPELA--REAGAFIVATGRSD-----------HPNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSCEPEP 198 (222)
T ss_dssp CHHHH--HHTTCSEEEESCTT-----------SSSBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTSCCBT
T ss_pred hhhhh--eeccceEEecCCCC-----------CCccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhcCCCCC
Confidence 55655 88999999999876 469999999999999999999985 999999999999999998764
|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-38 Score=289.64 Aligned_cols=133 Identities=24% Similarity=0.386 Sum_probs=122.9
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-C
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-Q 192 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~-~ 192 (533)
-++...+.++ |+++|||||+++|+++. +|++.+++++. +.|.|+|||||++||||||+|+ +
T Consensus 18 ~k~~~~~~~d-LslaYTPGVA~~c~~I~-------------~dp~~~~~yT~----k~N~VAVVtdGtaVLGLGniGp~A 79 (154)
T d1vl6a2 18 LPVEKVDRET-LSLLYTPGVADVARACA-------------EDPEKTYVYTS----RWNTVAVVSDGSAVLGLGNIGPYG 79 (154)
T ss_dssp CSCSCCCHHH-HHHHSTTTHHHHHHHHH-------------HCGGGHHHHSG----GGGEEEEEECSTTBTTTBSCCHHH
T ss_pred ecCCCCCHHH-HHHHcCcchHHHHHHHH-------------hCchhhhheee----eccEEEEEeCCceeecCCCccccc
Confidence 3455666666 89999999999999998 89999988777 6689999999999999999999 7
Q ss_pred cccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeee
Q 009519 193 GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (533)
Q Consensus 193 Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~E 271 (533)
|||+||||+.||+.||||| ++|||||. +| +||||++|+.+.|++ +||+|
T Consensus 80 alPVMEGKa~LfK~fa~iD---a~Pi~l~~--------~d-------------------~~~iv~~v~~i~PtFggInLE 129 (154)
T d1vl6a2 80 ALPVMEGKAFLFKAFADID---AFPICLSE--------SE-------------------EEKIISIVKSLEPSFGGINLE 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHCCE---EEEEECSC--------CC-------------------HHHHHHHHHHTGGGCSEEEEC
T ss_pred cccHHHHHHHHHHHhcCCC---ceeeeccc--------cC-------------------hHHHHHHHHHhcccccceehh
Confidence 9999999999999999999 99999998 44 699999999999998 99999
Q ss_pred cCCCchHHHHHHHHhcc--Cceecc
Q 009519 272 DFQMKWAFETLERYRKR--FCMFND 294 (533)
Q Consensus 272 Df~~~~af~iL~ryr~~--~~~FnD 294 (533)
||++|+||+|++|+|++ ||||||
T Consensus 130 DI~aP~CFeIe~~L~~~ldIPVfHD 154 (154)
T d1vl6a2 130 DIGAPKCFRILQRLSEEMNIPVFHD 154 (154)
T ss_dssp SCCTTHHHHHHHHHHHHCSSCEEEH
T ss_pred hhcCchhhHHHHHHHHHCCCCCcCC
Confidence 99999999999999987 899998
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.94 E-value=9.7e-06 Score=72.43 Aligned_cols=123 Identities=25% Similarity=0.374 Sum_probs=83.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+|.-+|+-||+=-|.+..| .|++ .+|+|+|||.+|..+++.|... |. ++++++.+. ..+
T Consensus 2 ~g~vSv~~aAv~la~~~~~-~l~~---~~ilviGaG~~g~~v~~~L~~~-----g~------~~i~v~nRt----~~k-- 60 (159)
T d1gpja2 2 EGAVSIGSAAVELAERELG-SLHD---KTVLVVGAGEMGKTVAKSLVDR-----GV------RAVLVANRT----YER-- 60 (159)
T ss_dssp CSCCSHHHHHHHHHHHHHS-CCTT---CEEEEESCCHHHHHHHHHHHHH-----CC------SEEEEECSS----HHH--
T ss_pred CCcccHHHHHHHHHHHHhC-Cccc---CeEEEECCCHHHHHHHHHHHhc-----CC------cEEEEEcCc----HHH--
Confidence 4556677777766777766 5677 9999999999999999888764 43 578888762 111
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhc-CCCCC-eEEecCCCCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES-DSVKP-AIFAMSNPTM 448 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~-~~erP-IIFaLSNPt~ 448 (533)
-..+++.-+.. .....++.+.+.. .|++|-+++.+ .+++++.++.+.+. ...+| +|+=||.|-.
T Consensus 61 ----a~~l~~~~~~~--~~~~~~~~~~l~~--~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~ 127 (159)
T d1gpja2 61 ----AVELARDLGGE--AVRFDELVDHLAR--SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRD 127 (159)
T ss_dssp ----HHHHHHHHTCE--ECCGGGHHHHHHT--CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCS
T ss_pred ----HHHHHHhhhcc--cccchhHHHHhcc--CCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCC
Confidence 11233321110 0124578999987 99999877654 58999999776432 23467 7888999964
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.70 E-value=0.014 Score=52.44 Aligned_cols=122 Identities=22% Similarity=0.282 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.||+--++-||+ |.|+.-|.- .++|++|=|--|-|+|+.+..... ++++++.
T Consensus 3 yg~g~S~~d~i~---r~t~~~laG---k~vvV~GYG~vGrG~A~~~rg~Ga------------~V~V~E~---------- 54 (163)
T d1v8ba1 3 YGCRHSLPDGLM---RATDFLISG---KIVVICGYGDVGKGCASSMKGLGA------------RVYITEI---------- 54 (163)
T ss_dssp HHHHHHHHHHHH---HHHCCCCTT---SEEEEECCSHHHHHHHHHHHHHTC------------EEEEECS----------
T ss_pred cccchhHHHHHH---HHhCceecC---CEEEEecccccchhHHHHHHhCCC------------EEEEEec----------
Confidence 477777777776 688888888 999999999999999999877533 7887754
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 456 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~ 456 (533)
+|.+..=|+- +| -+-.++.||++. .|++|-+.+..++++.+.++.|. +.-|+.-..==. .|+.-+.
T Consensus 55 -DPi~alqA~m----dG-f~v~~~~~a~~~--aDi~vTaTGn~~vI~~~h~~~MK----dgaIl~N~GHfd--~EIdv~~ 120 (163)
T d1v8ba1 55 -DPICAIQAVM----EG-FNVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK----NNAVVGNIGHFD--DEIQVNE 120 (163)
T ss_dssp -CHHHHHHHHT----TT-CEECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC----TTCEEEECSSTT--TSBCHHH
T ss_pred -CchhhHHHHh----cC-CccCchhHcccc--CcEEEEcCCCCccccHHHHHHhh----CCeEEEeccccc--hhhhhHH
Confidence 3444333332 11 123679999998 99999999988999999999993 455654332222 3888876
Q ss_pred Hhcc
Q 009519 457 AFKH 460 (533)
Q Consensus 457 A~~w 460 (533)
..++
T Consensus 121 L~~~ 124 (163)
T d1v8ba1 121 LFNY 124 (163)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 6554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.63 E-value=0.0041 Score=53.60 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=66.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCc----CCccCCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDF----MGLREGAS 399 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~----~~~~~~~~ 399 (533)
.||.|+|||+.|.++|..|.+. |. +++++|+..--.. .+..... .....+.. .......+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-----G~-------~V~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 65 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-----GQ-------SVLAWDIDAQRIK---EIQDRGA-IIAEGPGLAGTAHPDLLTSD 65 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCHHHHH---HHHHHTS-EEEESSSCCEEECCSEEESC
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEECCHHHHH---HHHHcCC-Cchhhhhhhhhhhhhhhhhh
Confidence 6999999999999999998874 43 6888887421100 0110000 00000000 00012357
Q ss_pred HHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccC
Q 009519 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~ 452 (533)
+.|+++. .|++|=+. +--..+++++.++....+.-+|+..+|....++.
T Consensus 66 ~~e~~~~--aD~iii~v--~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~ 114 (184)
T d1bg6a2 66 IGLAVKD--ADVILIVV--PAIHHASIAANIASYISEGQLIILNPGATGGALE 114 (184)
T ss_dssp HHHHHTT--CSEEEECS--CGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHH
T ss_pred hHhHhcC--CCEEEEEE--chhHHHHHHHHhhhccCCCCEEEEeCCCCccHHH
Confidence 9999998 89877332 3446799999997655667777777777664443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.23 E-value=0.0011 Score=60.06 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=66.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.-|++|+|||-||..-++..... | .+++.+|.+ . +.+...+..|....... ..+...|.+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~l-----G-------A~V~~~D~~----~--~~l~~l~~~~~~~~~~~--~~~~~~l~~ 91 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGL-----G-------AQVQIFDIN----V--ERLSYLETLFGSRVELL--YSNSAEIET 91 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEEESC----H--HHHHHHHHHHGGGSEEE--ECCHHHHHH
T ss_pred CcEEEEECCChHHHHHHHHHhhC-----C-------CEEEEEeCc----H--HHHHHHHHhhcccceee--hhhhhhHHH
Confidence 48999999999999988776654 3 379999973 1 12333344444321110 012345899
Q ss_pred HhcccCCcEEEEeccCCC-----CCCHHHHHHhhhcCCCCCeEEecC
Q 009519 403 VVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.++. .|++||.--.|| ++|+|+|+.|. +-.+|.=+|
T Consensus 92 ~~~~--aDivI~aalipG~~aP~lIt~~mv~~Mk----~GSVIVDva 132 (168)
T d1pjca1 92 AVAE--ADLLIGAVLVPGRRAPILVPASLVEQMR----TGSVIVDVA 132 (168)
T ss_dssp HHHT--CSEEEECCCCTTSSCCCCBCHHHHTTSC----TTCEEEETT
T ss_pred hhcc--CcEEEEeeecCCcccCeeecHHHHhhcC----CCcEEEEee
Confidence 9988 999999866554 79999999994 677887665
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.093 Score=45.14 Aligned_cols=134 Identities=21% Similarity=0.211 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh
Q 009519 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (533)
Q Consensus 303 ~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~ 382 (533)
.+|..+.|++..+.+..| +|+|+|+|+.|+..+.++... |. ++|+.+|+ ++.+.
T Consensus 11 pla~a~~a~~~~~~~~gd----~VlI~G~G~iG~~~~~~a~~~-----G~------~~Vi~~d~-----------~~~rl 64 (171)
T d1pl8a2 11 PLSVGIHACRRGGVTLGH----KVLVCGAGPIGMVTLLVAKAM-----GA------AQVVVTDL-----------SATRL 64 (171)
T ss_dssp HHHHHHHHHHHHTCCTTC----EEEEECCSHHHHHHHHHHHHT-----TC------SEEEEEES-----------CHHHH
T ss_pred HHHHHHHHHHHhCCCCCC----EEEEECCCccHHHHHHHHHHc-----CC------ceEEeccC-----------CHHHH
Confidence 467778888988876665 999999999999877666543 43 58999886 34555
Q ss_pred ccccccC-CcCCccCCCCHHHHhc------ccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 383 PFAKDPG-DFMGLREGASLLEVVR------KVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 383 ~~A~~~~-~~~~~~~~~~L~e~V~------~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
.+|+.-. +..-.....+..++.+ ..++|+.|-+++.+.+ -+..++.+ .++-.|.-+..|.......+.
T Consensus 65 ~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~-~~~a~~~~----~~gG~iv~~G~~~~~~~~~~~ 139 (171)
T d1pl8a2 65 SKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEAS-IQAGIYAT----RSGGTLVLVGLGSEMTTVPLL 139 (171)
T ss_dssp HHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHH-HHHHHHHS----CTTCEEEECSCCCSCCCCCHH
T ss_pred HHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCchh-HHHHHHHh----cCCCEEEEEecCCCCCccCHH
Confidence 5555310 0000012244555443 3468999988863221 23334444 234444445565555567776
Q ss_pred HHhcccCCcEEEec
Q 009519 456 DAFKHAGENIVFAS 469 (533)
Q Consensus 456 ~A~~wt~Grai~At 469 (533)
+.+. ++--|..|
T Consensus 140 ~~~~--k~l~i~Gs 151 (171)
T d1pl8a2 140 HAAI--REVDIKGV 151 (171)
T ss_dssp HHHH--TTCEEEEC
T ss_pred HHHH--CCcEEEEE
Confidence 6544 34445443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.83 E-value=0.0027 Score=55.83 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=69.8
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
..||.|+|||.-|..+|.+|.. .|++ +++++|.+ +++.....++.+.. .+...... .....+.+
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~-----~~~~------el~L~D~~~~~~~g~a~Dl~~~~-~~~~~~~~---~~~~~~~~ 71 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCAL-----RELA------DVVLYDVVKGMPEGKALDLSHVT-SVVDTNVS---VRAEYSYE 71 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----HTCC------EEEEECSSSSHHHHHHHHHHHHH-HHTTCCCC---EEEECSHH
T ss_pred CCcEEEECCCHHHHHHHHHHHh-----CCCc------eEEEEEeccccchhHHHHHhhhc-cccCCeeE---EeccCchh
Confidence 4799999999999888876653 3553 69999953 21110001232221 11111110 01235678
Q ss_pred HHhcccCCcEEEEecc---CCCC----------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcc
Q 009519 402 EVVRKVKPHVLLGLSG---VGGV----------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 460 (533)
Q Consensus 402 e~V~~vkptvLIG~S~---~~g~----------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~w 460 (533)
++++. .|++|=..+ .+|- .-+++++.+++ .++.-||+-.|||.. +...-+++.
T Consensus 72 ~~~~~--adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~-~~p~aiviivsNPvd---~lt~~~~~~ 143 (154)
T d1pzga1 72 AALTG--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLD---CMVKVMCEA 143 (154)
T ss_dssp HHHTT--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHH-HCTTCEEEECCSSHH---HHHHHHHHH
T ss_pred hhhcC--CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHh-cCCCcEEEEeCCcHH---HHHHHHHHH
Confidence 89988 899884433 3332 23567777754 889999999999984 555555553
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0059 Score=54.20 Aligned_cols=48 Identities=19% Similarity=0.453 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|++.+++-.|.++++ .+++|+|||.|+-+|+..+... |. ++|+++++
T Consensus 3 ~Gf~~~l~~~~~~l~~---k~vlIlGaGGaarai~~al~~~-----g~------~~i~i~nR 50 (182)
T d1vi2a1 3 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAIE-----GL------KEIKLFNR 50 (182)
T ss_dssp HHHHHHHHHTTCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC------SEEEEEEC
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCcHHHHHHHHHHhhc-----CC------ceEeeecc
Confidence 5899999999999988 9999999999988877666553 44 68999997
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.64 E-value=0.0092 Score=56.23 Aligned_cols=126 Identities=12% Similarity=0.124 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC-C
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-N 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~ 376 (533)
.||-=+..++-.+++..+.+|+. .||+|-|.|..|...|++|.+. |. +=+-+-|++|-|+.... +
T Consensus 9 ATg~Gv~~~~~~~~~~~~~~l~g---~~v~IqGfGnVG~~~a~~L~~~-----Ga------kvv~vsD~~g~i~~~~Gld 74 (242)
T d1v9la1 9 ATGFGVAVATREMAKKLWGGIEG---KTVAIQGMGNVGRWTAYWLEKM-----GA------KVIAVSDINGVAYRKEGLN 74 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTT---CEEEEECCSHHHHHHHHHHHTT-----TC------EEEEEECSSCEEECTTCCC
T ss_pred hhhHHHHHHHHHHHHHcCCCCCC---CEEEEECCCHHHHHHHHHHHHc-----CC------eEEEeeccccccccccccc
Confidence 46666667778888888888888 9999999999999999999764 43 34568899999887642 2
Q ss_pred CC---hhhhc--------cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 377 LD---PAAAP--------FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 377 l~---~~k~~--------~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
.. +++.. ++.... .....-.+.+-.++.||||=++. ++.+|++.++.|. -.+|.--+|
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~DIliPcA~-~~~I~~~~a~~i~-----ak~IvegAN 143 (242)
T d1v9la1 75 VELIQKNKGLTGPALVELFTTKDN-----AEFVKNPDAIFKLDVDIFVPAAI-ENVIRGDNAGLVK-----ARLVVEGAN 143 (242)
T ss_dssp THHHHHTTTSCHHHHHHHHHHTSC-----CCCCSSTTGGGGCCCSEEEECSC-SSCBCTTTTTTCC-----CSEEECCSS
T ss_pred HHHHHHHhhcchhhHHHhhhhccC-----ceEeeCcchhccccccEEeecch-hccccHHHHHhcc-----cCEEEecCC
Confidence 21 11111 111100 00011123345578999998885 7999999998872 345555555
Q ss_pred -CCC
Q 009519 446 -PTM 448 (533)
Q Consensus 446 -Pt~ 448 (533)
|+.
T Consensus 144 ~p~t 147 (242)
T d1v9la1 144 GPTT 147 (242)
T ss_dssp SCBC
T ss_pred CCCC
Confidence 874
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=95.60 E-value=0.034 Score=52.79 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+.||-=+.-.+-.+++..+.+|+. .||+|-|.|..|...|+.|.+... +=+-+-|++|-|+... .
T Consensus 13 eATG~Gv~~~~~~~~~~~~~~l~g---~~v~IQGfGnVG~~~a~~L~e~Ga-----------kvvavsD~~G~i~~~~-G 77 (255)
T d1bgva1 13 EATGYGSVYYVEAVMKHENDTLVG---KTVALAGFGNVAWGAAKKLAELGA-----------KAVTLSGPDGYIYDPE-G 77 (255)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSTT---CEEEECCSSHHHHHHHHHHHHHTC-----------EEEEEEETTEEEECTT-C
T ss_pred ccchHHHHHHHHHHHHhCCCCCCC---CEEEEECCCHHHHHHHHHHHHcCC-----------eEEEEecCCceEecCC-C
Confidence 346766777778888888999988 999999999999999999987533 4566889999998865 2
Q ss_pred CChh-hhccccc-----cCCcC------Cc--cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe
Q 009519 377 LDPA-AAPFAKD-----PGDFM------GL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 377 l~~~-k~~~A~~-----~~~~~------~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa 442 (533)
++.. ...+... ..... +. -....+ -.++.||||=+. ..+.+|++-++.+.+..| -+|.-
T Consensus 78 ld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~DiliPcA-~~~~I~~~~a~~l~a~~c--k~I~E 150 (255)
T d1bgva1 78 ITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKP----WGQKVDIIMPCA-TQNDVDLEQAKKIVANNV--KYYIE 150 (255)
T ss_dssp SCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCG----GGSCCSEEECCS-CTTCBCHHHHHHHHHTTC--CEEEC
T ss_pred CCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechhhc----ccccccEEeecc-ccccccHHHHHhhhhcCc--eEEec
Confidence 3321 1111100 00000 00 001112 236799999665 579999999999954123 48888
Q ss_pred cCC-CCC
Q 009519 443 MSN-PTM 448 (533)
Q Consensus 443 LSN-Pt~ 448 (533)
-+| |+.
T Consensus 151 gAN~p~t 157 (255)
T d1bgva1 151 VANMPTT 157 (255)
T ss_dssp CSSSCBC
T ss_pred CCCCCcc
Confidence 888 765
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.59 E-value=0.0067 Score=55.55 Aligned_cols=97 Identities=21% Similarity=0.394 Sum_probs=60.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh--------------------hc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA--------------------AP 383 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k--------------------~~ 383 (533)
-||||+|||-||..-++.-... | .+++.+|.+ ..+ +...+ -.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l-----G-------A~V~v~D~~----~~~--~~~l~~l~~~~i~~~~~~~~~~~~~~g 91 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL-----G-------AVVMATDVR----AAT--KEQVESLGGKFITVDDEAMKTAETAGG 91 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSC----STT--HHHHHHTTCEECCC-------------
T ss_pred cEEEEEcCcHHHHHHHHHHHHc-----C-------CEEEEEecc----HHH--HHHHHHhhcceEEEecccccccccccc
Confidence 6999999999999777665544 3 378888863 111 11111 12
Q ss_pred cccccCC-cCCccCCCCHHHHhcccCCcEEEEeccCCC-----CCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 384 FAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 384 ~A~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
||+...+ +.. .+...|.+.++. .|++||..-.|| ++|+++|+.|. +-.+|.=||-
T Consensus 92 yA~~~s~~~~~-~~~~~l~~~l~~--aDlVI~talipG~~aP~lit~~mv~~Mk----~GSVIVDvai 152 (183)
T d1l7da1 92 YAKEMGEEFRK-KQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMK----PGSVIIDLAV 152 (183)
T ss_dssp ----------C-CHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSC----TTCEEEETTG
T ss_pred chhhcCHHHHH-HHHHHHHHHHHh--hhhheeeeecCCcccceeehHHHHHhcC----CCcEEEEEee
Confidence 3432111 110 122347777876 999999876665 69999999994 6889987773
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.018 Score=51.63 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=87.9
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC
Q 009519 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (533)
Q Consensus 294 DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~ 373 (533)
|-.+||+--++-+++ |.|+..|.- .+++|+|-|-.|-|+|+-+....+ +++++|.+
T Consensus 1 dN~yg~g~S~~~~~~---r~t~~~l~G---k~v~V~GyG~iG~g~A~~~rg~G~------------~V~v~e~d------ 56 (163)
T d1li4a1 1 DNLYGCRESLIDGIK---RATDVMIAG---KVAVVAGYGDVGKGCAQALRGFGA------------RVIITEID------ 56 (163)
T ss_dssp HHHHHHHHHHHHHHH---HHHCCCCTT---CEEEEECCSHHHHHHHHHHHHTTC------------EEEEECSC------
T ss_pred CCcccchhhHHHHHH---HHhCceecC---CEEEEeccccccHHHHHHHHhCCC------------eeEeeecc------
Confidence 445788888877776 588988888 999999999999999998876533 78877763
Q ss_pred CCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC-CcccC
Q 009519 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAEC 452 (533)
Q Consensus 374 r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~ 452 (533)
+.+.-=|+- .+ -...++.|+++. .|++|-+.+..++++.|.++.| +.-.|+ +|=. ...|+
T Consensus 57 -----p~~al~A~~----dG-~~v~~~~~a~~~--adivvtaTGn~~vI~~eh~~~M-----KdgaIL--~N~Ghfd~EI 117 (163)
T d1li4a1 57 -----PINALQAAM----EG-YEVTTMDEACQE--GNIFVTTTGCIDIILGRHFEQM-----KDDAIV--CNIGHFDVEI 117 (163)
T ss_dssp -----HHHHHHHHH----TT-CEECCHHHHTTT--CSEEEECSSCSCSBCHHHHTTC-----CTTEEE--EECSSSTTSB
T ss_pred -----cchhHHhhc----Cc-eEeeehhhhhhh--ccEEEecCCCccchhHHHHHhc-----cCCeEE--EEecccccee
Confidence 222222221 11 123569999988 9999999988899999999999 244443 3422 33488
Q ss_pred CHHHHhc
Q 009519 453 TAADAFK 459 (533)
Q Consensus 453 tpe~A~~ 459 (533)
.-+...+
T Consensus 118 d~~~L~~ 124 (163)
T d1li4a1 118 DVKWLNE 124 (163)
T ss_dssp CHHHHHH
T ss_pred cHHHHhh
Confidence 8876544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.11 Score=46.34 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHh---------C------CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 009519 299 TAGVALAGLLGTVRAQ---------G------LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (533)
Q Consensus 299 TaaV~LAgli~Alr~~---------g------~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~l 363 (533)
.|=-+++.+++.+|-. | ..-.+|++++|.|+|.|..|..+|+++... |+ +++.
T Consensus 5 VAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~f-----g~-------~v~~ 72 (188)
T d1sc6a1 5 VAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL-----GM-------YVYF 72 (188)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEE
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccc-----cc-------eEee
Confidence 3445677777777641 0 011234559999999999999999987654 33 6888
Q ss_pred EeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe-c---cCCCCCCHHHHHHhhhcCCCCCe
Q 009519 364 LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-S---GVGGVFNEEVLKAMRESDSVKPA 439 (533)
Q Consensus 364 vD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S---~~~g~Fteevv~~Ma~~~~erPI 439 (533)
.|+..- .... .. ....+|.|+++. .|+++=. . ..-+.|+++.++.|. +.++
T Consensus 73 ~d~~~~-------~~~~-----~~-------~~~~~l~ell~~--sDii~i~~plt~~T~~li~~~~l~~mk----~~a~ 127 (188)
T d1sc6a1 73 YDIENK-------LPLG-----NA-------TQVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAKEISLMK----PGSL 127 (188)
T ss_dssp ECSSCC-------CCCT-----TC-------EECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHHHHHHSC----TTEE
T ss_pred cccccc-------chhh-----hh-------hhhhhHHHHHhh--ccceeecccCCcchhhhccHHHHhhCC----CCCE
Confidence 876321 1100 00 123579999988 8988632 1 113899999999994 7899
Q ss_pred EEecCCCCCcccCCHHHHhcc-cCCcEEEe
Q 009519 440 IFAMSNPTMNAECTAADAFKH-AGENIVFA 468 (533)
Q Consensus 440 IFaLSNPt~~aE~tpe~A~~w-t~Grai~A 468 (533)
+.=.|...- +.-++.+++ .+|+...|
T Consensus 128 lIN~aRG~l---vde~aL~~aL~~~~~~~a 154 (188)
T d1sc6a1 128 LINASRGTV---VDIPALADALASKHLAGA 154 (188)
T ss_dssp EEECSCSSS---BCHHHHHHHHHTTSEEEE
T ss_pred EEEcCcHHh---hhhHHHHHHHHcCCceEE
Confidence 998887765 444444443 35554433
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.89 E-value=0.06 Score=49.22 Aligned_cols=113 Identities=25% Similarity=0.315 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~-~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.||-=+..++-.+++..|. +|+. .||+|-|.|..|..+|+.|.+. |. +++++|.+.- .
T Consensus 4 ~Ta~Gv~~~~~~~~~~~g~~~L~g---k~v~IqG~G~VG~~~A~~L~~~-----Ga-------kvvv~d~d~~------~ 62 (201)
T d1c1da1 4 TTAVGVFEAMKATVAHRGLGSLDG---LTVLVQGLGAVGGSLASLAAEA-----GA-------QLLVADTDTE------R 62 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCHH------H
T ss_pred chHHHHHHHHHHHHHHhCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEecchHH------H
Confidence 4677777778888888775 5777 9999999999999999998875 42 6777876311 1
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
+......-+ ...+..|+. .++.||||=+.. ++.+|++.++.|. -.+|.--+| |+.
T Consensus 63 ~~~~~~~g~----------~~~~~~~~~-~~~~DI~iPcA~-~~~I~~~~a~~i~-----ak~i~e~AN~p~~ 118 (201)
T d1c1da1 63 VAHAVALGH----------TAVALEDVL-STPCDVFAPCAM-GGVITTEVARTLD-----CSVVAGAANNVIA 118 (201)
T ss_dssp HHHHHHTTC----------EECCGGGGG-GCCCSEEEECSC-SCCBCHHHHHHCC-----CSEECCSCTTCBC
T ss_pred HHHHHhhcc----------cccCccccc-cccceeeecccc-cccccHHHHhhhh-----hheeeccCCCCcc
Confidence 111111111 112344544 457899997764 8999999999992 358888887 654
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.81 E-value=0.079 Score=49.44 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
||-=+.-++-.+++..|.+++. .||+|-|.|..|...|+.|.+. .|. +=+-+.|++|-|+... .++
T Consensus 10 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqG~GnVG~~~a~~L~~e----~Ga------~vv~vsd~~G~i~~~~-Gld 75 (234)
T d1b26a1 10 TGRGVKVCAGLAMDVLGIDPKK---ATVAVQGFGNVGQFAALLISQE----LGS------KVVAVSDSRGGIYNPE-GFD 75 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTT---CEEEEECCSHHHHHHHHHHHHH----HCC------EEEEEEETTEEEECTT-CCC
T ss_pred hhHHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHh----cCC------ceEEeecCCCcEEecc-ccc
Confidence 5554555667788888998888 9999999999999999998653 232 4566889999988754 333
Q ss_pred h-----hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 379 P-----AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 379 ~-----~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
. ++........ ..+ ....+-.+ +-.++.||||=++ .++.+|++.++.+. -.+|.--+|.
T Consensus 76 ~~~l~~~~~~~~~~~~-~~~-~~~~~~~~-~~~~~~DI~~PcA-~~~~I~~~~a~~l~-----~~~I~e~AN~ 139 (234)
T d1b26a1 76 VEELIRYKKEHGTVVT-YPK-GERITNEE-LLELDVDILVPAA-LEGAIHAGNAERIK-----AKAVVEGANG 139 (234)
T ss_dssp HHHHHHHHHHSSCSTT-CSS-CEEECHHH-HHTSCCSEEEECS-CTTCBCHHHHTTCC-----CSEEECCSSS
T ss_pred hHHHHHHHHhhcceec-ccc-ceeecccc-ccccccceeecch-hcccccHHHHHHhh-----hceEeecCCC
Confidence 3 2221111100 000 11234444 4456899999775 58999999999982 4699999993
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.015 Score=50.85 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
-|++.+|+..|..++. ++|+|+|||.|+-+|+-.|.+ .|. +|++++|
T Consensus 3 ~Gf~~~l~~~~~~~~~---k~vlIlGaGGaarai~~al~~-----~g~-------~i~I~nR 49 (170)
T d1nyta1 3 VGLLSDLERLSFIRPG---LRILLIGAGGASRGVLLPLLS-----LDC-------AVTITNR 49 (170)
T ss_dssp HHHHHHHHHHTCCCTT---CEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECS
T ss_pred hHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHhcc-----cce-------EEEeccc
Confidence 4789999999999999 999999999999999877654 342 5888876
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.016 Score=52.19 Aligned_cols=104 Identities=20% Similarity=0.330 Sum_probs=60.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc-ccCCCCCChhhhccccccC------------C
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI-TKERKNLDPAAAPFAKDPG------------D 390 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi-~~~r~~l~~~k~~~A~~~~------------~ 390 (533)
+||.|+|||..|.|||.+++.+ |. +++++|.+==. .+.+..+.......++... .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~-----G~-------~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT-----GH-------TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 72 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHH
Confidence 6999999999999999887754 54 78899874100 0000001100000000000 0
Q ss_pred -cCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe
Q 009519 391 -FMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 391 -~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa 442 (533)
........++.++++. .|.+|=+-.---...+++.+.+.+ .++.-.||+
T Consensus 73 ~l~~i~~~~d~~~a~~~--ad~ViEav~E~l~~K~~v~~~l~~-~~~~~~ila 122 (192)
T d1f0ya2 73 TLSTIATSTDAASVVHS--TDLVVEAIVENLKVKNELFKRLDK-FAAEHTIFA 122 (192)
T ss_dssp HHHTEEEESCHHHHTTS--CSEEEECCCSCHHHHHHHHHHHTT-TSCTTCEEE
T ss_pred HHhhccccchhHhhhcc--cceehhhcccchhHHHHHHHHHhh-hcccCceee
Confidence 0000123578888888 788887654334577888888854 666666664
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.89 E-value=0.0095 Score=52.85 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=65.5
Q ss_pred ceEEEeCchhHHHHHH--HHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh-hhhccccccCCcCCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVL--KMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP-AAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA--~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~-~k~~~A~~~~~~~~~~~~~~L 400 (533)
.||+|+||||.|.+.+ .++.. ...+. ...|+|+|.+-=..+. +-+.. +.+.++....++. .....+.
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~----~~~~~----~~eI~L~Di~e~~~~~-~~~d~~~~~~~~~~~~~~~-~~~~td~ 71 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKR----YHELP----VGELWLVDIPEGKEKL-EIVGALAKRMVEKAGVPIE-IHLTLDR 71 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT----TTTCC----EEEEEEECCGGGHHHH-HHHHHHHHHHHHHTTCCCE-EEEESCH
T ss_pred cEEEEECCChhhHHHHHHHHHHh----ccccC----CCEEEEEcCCccHHHH-HHHHHHHHHHHHhcCCCce-eeecCCc
Confidence 6999999999876432 22222 12221 2489999974111110 11221 2223332211111 0134678
Q ss_pred HHHhcccCCcEEEEeccCCCC---------------C-------------------CHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGV---------------F-------------------NEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~---------------F-------------------teevv~~Ma~~~~erPIIFaLSNP 446 (533)
.+++++ .|++|=+.+.++. + =+|+++.|.+ ++++.+++-.|||
T Consensus 72 ~~al~g--aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~-~~pda~~i~vtNP 148 (169)
T d1s6ya1 72 RRALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEE-LCPDAWLINFTNP 148 (169)
T ss_dssp HHHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSS
T ss_pred hhhcCC--CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhh-cCCCeEEEEeCCh
Confidence 999998 8999866654431 0 2678888854 9999999999999
Q ss_pred CC
Q 009519 447 TM 448 (533)
Q Consensus 447 t~ 448 (533)
..
T Consensus 149 vd 150 (169)
T d1s6ya1 149 AG 150 (169)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.77 E-value=0.41 Score=40.52 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh
Q 009519 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (533)
Q Consensus 303 ~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~ 382 (533)
-||.-+.|++..+.+..| +++|+|+|..|+..+.++.. .| .+++.+|+ ++.+.
T Consensus 11 Pla~a~~a~~~~~~~~g~----~vlV~G~G~vG~~~~~~ak~-----~G-------a~vi~v~~-----------~~~r~ 63 (170)
T d1e3ja2 11 PLSVGVHACRRAGVQLGT----TVLVIGAGPIGLVSVLAAKA-----YG-------AFVVCTAR-----------SPRRL 63 (170)
T ss_dssp HHHHHHHHHHHHTCCTTC----EEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEES-----------CHHHH
T ss_pred HHHHHHHHHHHhCCCCCC----EEEEEcccccchhhHhhHhh-----hc-------ccccccch-----------HHHHH
Confidence 356668888888876666 89999999888887654433 34 26888876 33444
Q ss_pred ccccccCC---cCCccCCCCHHHHhc------ccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCC
Q 009519 383 PFAKDPGD---FMGLREGASLLEVVR------KVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECT 453 (533)
Q Consensus 383 ~~A~~~~~---~~~~~~~~~L~e~V~------~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~t 453 (533)
++|+.-.- ........+..+.++ .-++|+.|=+++.+.++ +..++.+ .+.=.|.-+..|....++.
T Consensus 64 ~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~-~~a~~~~----~~~G~iv~~G~~~~~~~~~ 138 (170)
T d1e3ja2 64 EVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCI-TIGINIT----RTGGTLMLVGMGSQMVTVP 138 (170)
T ss_dssp HHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHH-HHHHHHS----CTTCEEEECSCCSSCCCCC
T ss_pred HHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCChHHH-HHHHHHH----hcCCceEEEecCCCCCCcC
Confidence 44442100 000011223443333 23589999887632222 3344444 2344455566665545677
Q ss_pred HHHHhc
Q 009519 454 AADAFK 459 (533)
Q Consensus 454 pe~A~~ 459 (533)
+.+.+.
T Consensus 139 ~~~~~~ 144 (170)
T d1e3ja2 139 LVNACA 144 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=93.76 E-value=0.012 Score=52.43 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=62.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
-||.|+|||+.|...+ ++..+....++ +-..|.|+|.+-=..+.. .++......+-.+.. .....++.|
T Consensus 3 mKI~iIGaGsvg~t~~--~~~~l~~~~~l----~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~----i~~~td~~e 72 (171)
T d1obba1 3 VKIGIIGAGSAVFSLR--LVSDLCKTPGL----SGSTVTLMDIDEERLDAILTIAKKYVEEVGADLK----FEKTMNLDD 72 (171)
T ss_dssp CEEEEETTTCHHHHHH--HHHHHHTCGGG----TTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCE----EEEESCHHH
T ss_pred cEEEEECCCHHHhHHH--HHHHHHhcccc----CCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeE----EEEeCChhh
Confidence 6999999999987653 12222211222 125899999851000000 011111111211110 013468999
Q ss_pred HhcccCCcEEEEeccC--------------------------------CCC--------CCHHHHHHhhhcCCCCCeEEe
Q 009519 403 VVRKVKPHVLLGLSGV--------------------------------GGV--------FNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~--------------------------------~g~--------Fteevv~~Ma~~~~erPIIFa 442 (533)
+++. +|++|=.-++ +|. .-+|+++.+. +++++-+++=
T Consensus 73 aL~d--ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~-~~~p~a~~i~ 149 (171)
T d1obba1 73 VIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIE-KLSPKAWYLQ 149 (171)
T ss_dssp HHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHH-HHCTTCEEEE
T ss_pred cccC--CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHH-HHCcCeEEEE
Confidence 9988 8988732211 122 1257777775 4899999999
Q ss_pred cCCCCC
Q 009519 443 MSNPTM 448 (533)
Q Consensus 443 LSNPt~ 448 (533)
.|||..
T Consensus 150 ~TNPvd 155 (171)
T d1obba1 150 AANPIF 155 (171)
T ss_dssp CSSCHH
T ss_pred ECChHH
Confidence 999976
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.018 Score=45.71 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=28.6
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++.+||+|+|+|-+|.++|+.|... | .+++++|.+
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~-----g-------~~v~~~D~~ 37 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLAR-----G-------VTPRVMDTR 37 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHT-----T-------CCCEEEESS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHC-----C-------CEEEEeeCC
Confidence 4559999999999999999988764 4 278888873
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.64 E-value=0.026 Score=48.96 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=66.2
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||+|+|| |.-|..+|-+|.. .|+- +.+.|+|.+-.--.. .++.+ -..|...... -...+..|+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~-----~~~~-----~elvLiDi~~~~~~a-~Dl~~-~~~~~~~~~~----~~~~~~~~~ 65 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKN-----SPLV-----SRLTLYDIAHTPGVA-ADLSH-IETRATVKGY----LGPEQLPDC 65 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHT-----CTTC-----SEEEEEESSSHHHHH-HHHTT-SSSSCEEEEE----ESGGGHHHH
T ss_pred eEEEECCCChHHHHHHHHHHh-----CCcc-----ceEEEEeccccchhh-HHHhh-hhhhcCCCeE----EcCCChHHH
Confidence 8999997 9999999987754 4552 479999975210000 12221 1122211100 123568899
Q ss_pred hcccCCcEEE---EeccCCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLL---GLSGVGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLI---G~S~~~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++. .|++| |.+-.+|- .-+++++.+.+ +++..||+-.|||..
T Consensus 66 ~~~--aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~-~~p~~iiivvtNPvD 121 (144)
T d1mlda1 66 LKG--CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQ-HCPDAMICIISNPVN 121 (144)
T ss_dssp HTT--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECSSCHH
T ss_pred hCC--CCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCchh
Confidence 988 89988 43333332 23567777754 899999999999985
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.61 E-value=0.03 Score=49.03 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|+..+++..+.+ ++ .||+|+|||.|+.+|+..|.+ .|. ++|+++++
T Consensus 4 G~~~~l~~~~~~-~~---~~vlIlGaGGaarai~~aL~~-----~g~------~~I~I~nR 49 (167)
T d1npya1 4 AIVKLIEKYHLN-KN---AKVIVHGSGGMAKAVVAAFKN-----SGF------EKLKIYAR 49 (167)
T ss_dssp HHHHHHHHTTCC-TT---SCEEEECSSTTHHHHHHHHHH-----TTC------CCEEEECS
T ss_pred HHHHHHHHcCCC-CC---CeEEEECCCHHHHHHHHHHHH-----CCC------CEEEEecc
Confidence 678889888887 77 899999999999988777654 454 57998876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.54 E-value=0.032 Score=47.86 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|+|..|..+|+.|.+ .| .+++.+|++ . +.+...++.-.-+ ...+..|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~-----~g-------~~V~~~d~~----~--~~~~~a~~~~~~~--------~~~~~~~~~ 55 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR-----RG-------HYLIGVSRQ----Q--STCEKAVERQLVD--------EAGQDLSLL 55 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TT-------CEEEEECSC----H--HHHHHHHHTTSCS--------EEESCGGGG
T ss_pred EEEEEeecHHHHHHHHHHHH-----CC-------CEEEEEECC----c--hHHHHHHHhhccc--------eeeeecccc
Confidence 79999999999999987754 34 368888773 1 1111111111000 112345677
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
+. +|++| ++. |-.-++++++.++....+..||.-.++-.
T Consensus 56 ~~--~DiIi-lav-p~~~~~~vl~~l~~~l~~~~iv~~~~s~~ 94 (165)
T d2f1ka2 56 QT--AKIIF-LCT-PIQLILPTLEKLIPHLSPTAIVTDVASVK 94 (165)
T ss_dssp TT--CSEEE-ECS-CHHHHHHHHHHHGGGSCTTCEEEECCSCC
T ss_pred cc--ccccc-ccC-cHhhhhhhhhhhhhhcccccceeeccccc
Confidence 76 89888 665 43457889999977778899999887644
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.48 E-value=0.011 Score=51.88 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=65.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||.-|..+|.+|. +.+++ .++|+|.+-=..++. .+|++. ..+....... ...+-.+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~-----~~~l~------el~L~Di~~~~~~g~a~Dl~~~-~~~~~~~~~v----~~~~~~~ 67 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIV-----QKNLG------DVVLFDIVKNMPHGKALDTSHT-NVMAYSNCKV----SGSNTYD 67 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHH-----HTTCC------EEEEECSSSSHHHHHHHHHHTH-HHHHTCCCCE----EEECCGG
T ss_pred CeEEEECCCHHHHHHHHHHH-----hCCCC------eEEEEeccCCcceeeecchhhh-ccccCCCcEE----Eeccccc
Confidence 69999999999988886553 24663 499999632111110 122221 1222211110 1122345
Q ss_pred HhcccCCcEEEEeccC---CCCC------------C----HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 403 VVRKVKPHVLLGLSGV---GGVF------------N----EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~F------------t----eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++ .|++|=+.+. +|-- + +++++.++ +++++.||+-.|||.. +...-++++|
T Consensus 68 ~~~~--advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~-~~~p~aivivvtNPvD---~~t~~~~~~s 139 (150)
T d1t2da1 68 DLAG--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIK-KNCPNAFIIVVTNPVD---VMVQLLHQHS 139 (150)
T ss_dssp GGTT--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHH-HHCTTSEEEECSSSHH---HHHHHHHHHH
T ss_pred ccCC--CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCchH---HHHHHHHHHH
Confidence 5666 8888855553 3321 2 34444554 3789999999999974 5555565553
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.45 E-value=0.062 Score=50.39 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC-
Q 009519 298 GTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK- 375 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~- 375 (533)
.||-=+.-++..+++..|.+ |+. .||+|-|.|..|..+|++|.+. .|. +-+-+.|++|-|+....
T Consensus 9 ATg~Gv~~~~~~~~~~~g~~~l~g---~~v~IqGfGnVG~~~a~~L~~~----~G~------kvv~vsD~~g~i~~~~G~ 75 (239)
T d1gtma1 9 ATARGASYTIREAAKVLGWDTLKG---KTIAIQGYGNAGYYLAKIMSED----FGM------KVVAVSDSKGGIYNPDGL 75 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCSTT---CEEEEECCSHHHHHHHHHHHHT----TCC------EEEEEECSSCEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHhCCCCcCC---CEEEEECCCHHHHHHHHHHHHh----cCc------ceeeccccccceecCCcC
Confidence 46666666777888888854 777 9999999999999999988652 233 45667899998876431
Q ss_pred CCChhhhcccccc--CCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 376 NLDPAAAPFAKDP--GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 376 ~l~~~k~~~A~~~--~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
++++..+.+.... ....+ ....+-.+ +-.++.||||=++. +|.+|++.++.+ .-.+|.--+| |++
T Consensus 76 d~~~l~~~~~~~~~~~~~~~-~~~~~~~~-i~~~~~DIl~PcA~-~~~I~~~~a~~i-----~ak~I~e~AN~p~t 143 (239)
T d1gtma1 76 NADEVLKWKNEHGSVKDFPG-ATNITNEE-LLELEVDVLAPAAI-EEVITKKNADNI-----KAKIVAEVANGPVT 143 (239)
T ss_dssp CHHHHHHHHHHHSSSTTCTT-SEEECHHH-HHHSCCSEEEECSC-SCCBCTTGGGGC-----CCSEEECCSSSCBC
T ss_pred CHHHHHHHHHhccccccCCC-Ceeecccc-cccccccEEeeccc-cccccHHHHHhc-----cccEEEecCCCCCC
Confidence 2222111111110 00000 01123444 34578999997775 799999999887 3468888888 664
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=93.44 E-value=0.039 Score=48.55 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++.+++-.+..+++ .+++|+|||.|+-+|+..|.+ . + ++|++++|.
T Consensus 3 ~Gf~~~l~~~~~~~~~---k~vlIlGaGGaarai~~aL~~-~----~-------~~i~I~nR~ 50 (171)
T d1p77a1 3 IGLVTDLQRLNWLRPN---QHVLILGAGGATKGVLLPLLQ-A----Q-------QNIVLANRT 50 (171)
T ss_dssp HHHHHHHHHTTCCCTT---CEEEEECCSHHHHTTHHHHHH-T----T-------CEEEEEESS
T ss_pred HHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHcc-c----C-------ceeeeccch
Confidence 4789999988888888 999999999999888766653 1 1 589999874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.028 Score=47.32 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=57.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|||+.|..+|..|.++ |. ++.++|+.---.............+.. ....+..+.+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~-----G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 61 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ-----GH-------EVQGWLRVPQPYCSVNLVETDGSIFNE--------SLTANDPDFL 61 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSCCSEEEEEEECTTSCEEEE--------EEEESCHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHC-----CC-------ceEEEEcCHHHhhhhccccCCcccccc--------ccccchhhhh
Confidence 899999999999999998775 42 577777642111000000000000000 0112345666
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.. +|++| ++. +.--++++++.++...++.-+|+.+.|=-
T Consensus 62 ~~--~D~ii-i~v-ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 62 AT--SDLLL-VTL-KAWQVSDAVKSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp HT--CSEEE-ECS-CGGGHHHHHHHHHTTSCTTSCEEEECSSS
T ss_pred cc--cceEE-Eee-cccchHHHHHhhccccCcccEEeeccCcc
Confidence 66 89887 443 33467888988865456666677788843
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.37 E-value=0.12 Score=44.33 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=66.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||.-|..+|-.|+. .|+- ..+.|+|.+.=..++. -+|.+. ..|..... ....-.+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~L~D~~~~~~~g~a~Dl~~~-~~~~~~~~------~~~~~~~ 64 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMAL-----RQTA-----NELVLIDVFKEKAIGEAMDINHG-LPFMGQMS------LYAGDYS 64 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTCS-----SEEEEECCC---CCHHHHHHTTS-CCCTTCEE------EC--CGG
T ss_pred CeEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeccCCccceeeeeeccC-cccCCCee------EeeCcHH
Confidence 589999999999999987765 3542 4699999542111111 122211 12222110 0111234
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++ +|++|=+.+.+ |- .-+++++.|++ ++++.|++--|||.. +...-++++|
T Consensus 65 ~~~~--adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~-~~p~ai~ivvtNPvd---v~t~~~~k~s 131 (142)
T d1y6ja1 65 DVKD--CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMK-YYNHGVILVVSNPVD---IITYMIQKWS 131 (142)
T ss_dssp GGTT--CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHH-HCCSCEEEECSSSHH---HHHHHHHHHH
T ss_pred HhCC--CceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhc-cCCCceEEEecChHH---HHHHHHHHHH
Confidence 5666 88777443322 21 22367777754 889999999999985 5666677765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.14 E-value=0.078 Score=46.81 Aligned_cols=110 Identities=22% Similarity=0.320 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
|+-.+..+++.+..+..|.+|++ ++++|.|| |..|..+|+.+.+. |. +++++|++ .+ .
T Consensus 1 g~~~~~~~~v~~~~~~~~~~l~g---K~vlItGasgGIG~~ia~~la~~-----G~-------~V~~~~r~----~~--~ 59 (191)
T d1luaa1 1 GSNTTAAAGVALVVKAAGGSVKG---KKAVVLAGTGPVGMRSAALLAGE-----GA-------EVVLCGRK----LD--K 59 (191)
T ss_dssp GHHHHHHHHHHHHHHHTTSCCTT---CEEEEETTTSHHHHHHHHHHHHT-----TC-------EEEEEESS----HH--H
T ss_pred CCCccHHHHHHHHHHHcCCCCCC---CEEEEECCCHHHHHHHHHHHHhh-----cc-------chhhcccc----hH--H
Confidence 44456678889999999999999 99999995 78888888888764 43 78888884 11 1
Q ss_pred CChhhhccccccC-Cc--CCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHh
Q 009519 377 LDPAAAPFAKDPG-DF--MGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAM 430 (533)
Q Consensus 377 l~~~k~~~A~~~~-~~--~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~M 430 (533)
+......+..... .. -...+..++.+++.. .|+||-..+.+ ...++|.++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--iDilin~Ag~g~~~~~~e~~~~~ 115 (191)
T d1luaa1 60 AQAAADSVNKRFKVNVTAAETADDASRAEAVKG--AHFVFTAGAIGLELLPQAAWQNE 115 (191)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT--CSEEEECCCTTCCCBCHHHHHTC
T ss_pred HHHHHHHHHhccchhhhhhhcccHHHHHHHhcC--cCeeeecCccccccCCHHHHHhh
Confidence 2221111111100 00 000122457888877 79999776542 45788888866
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.78 E-value=0.035 Score=48.42 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=29.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
++||+|+|||.||+..|-.|.+. |. ++.++|++.+
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~-----G~-------~V~vier~~~ 40 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARK-----GY-------SVHILARDLP 40 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESSCT
T ss_pred CCcEEEECccHHHHHHHHHHHHC-----CC-------CEEEEeCCCC
Confidence 47999999999999999998653 53 6999998643
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.76 E-value=0.015 Score=51.92 Aligned_cols=112 Identities=23% Similarity=0.266 Sum_probs=63.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccc-cCCcCCccCCCCH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKD-PGDFMGLREGASL 400 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~-~~~~~~~~~~~~L 400 (533)
+.||+|+|||+.|.. .++...+.+...++ -..|+|+|.+ ++|.. ....-..++.. ..++. .....+.
T Consensus 3 ~~KI~iIGaGsv~~~--~~~~~ll~~~~~l~----~~eivL~Did----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 71 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTP--GIVLMLLDHLEEFP----IRKLKLYDND----KERQDRIAGACDVFIREKAPDIE-FAATTDP 71 (167)
T ss_dssp CEEEEEECTTSSSHH--HHHHHHHHTTTTSC----EEEEEEECSC----HHHHHHHHHHHHHHHHHHCTTSE-EEEESCH
T ss_pred CceEEEECCChhhhH--HHHHHHHhhhhhcC----CCEEEEEcCC----hhHHHHHHHHHHHHHHHhCCCcc-eEecCCh
Confidence 479999999997543 33333333112221 2479999974 22200 00000011111 11100 0134689
Q ss_pred HHHhcccCCcEEEEeccCCC---------------C-------------------CCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGG---------------V-------------------FNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g---------------~-------------------Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.|+++. +|++|=+.+.++ . +=+|+++.|.+ +++..+++-.|||
T Consensus 72 ~eal~~--AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~-~~P~A~li~~TNP 148 (167)
T d1u8xx1 72 EEAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEK-YSPDAWMLNYSNP 148 (167)
T ss_dssp HHHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECCSC
T ss_pred hhccCC--CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHh-hCCCeEEEEeCCH
Confidence 999999 999985544322 1 12477888854 8999999999999
Q ss_pred CC
Q 009519 447 TM 448 (533)
Q Consensus 447 t~ 448 (533)
..
T Consensus 149 vd 150 (167)
T d1u8xx1 149 AA 150 (167)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.63 E-value=0.14 Score=44.37 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=64.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC--CcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG--DFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~--~~~~~~~~~~L~ 401 (533)
++|+|+|+|..|+..+.++... |. ++++.+|+ ++.|..+|++-. +.- .....++.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~-----g~------~~v~~~~~-----------~~~k~~~a~~~Ga~~~i-~~~~~~~~ 86 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVC-----GA------SIIIAVDI-----------VESRLELAKQLGATHVI-NSKTQDPV 86 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH-----TC------SEEEEEES-----------CHHHHHHHHHHTCSEEE-ETTTSCHH
T ss_pred CEEEEeCCCHHHhhhhhccccc-----cc------ceeeeecc-----------HHHHHHHHHHcCCeEEE-eCCCcCHH
Confidence 6999999999888888666554 33 57888875 234444444210 000 01124566
Q ss_pred HHhccc---CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEec
Q 009519 402 EVVRKV---KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFAS 469 (533)
Q Consensus 402 e~V~~v---kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~At 469 (533)
|.|+.. ++|+.|=+++.+..| ++.++.++ ..-+=+++.+.......+..+.+.+. ++.-|..|
T Consensus 87 ~~i~~~t~gg~D~vid~~G~~~~~-~~~~~~~~--~~G~i~~~G~~~~~~~~~~~~~~~~~--k~~~i~Gs 152 (174)
T d1f8fa2 87 AAIKEITDGGVNFALESTGSPEIL-KQGVDALG--ILGKIAVVGAPQLGTTAQFDVNDLLL--GGKTILGV 152 (174)
T ss_dssp HHHHHHTTSCEEEEEECSCCHHHH-HHHHHTEE--EEEEEEECCCCSTTCCCCCCHHHHHH--TTCEEEEC
T ss_pred HHHHHHcCCCCcEEEEcCCcHHHH-HHHHhccc--CceEEEEEeecCCCcccccCHHHHHH--CCCEEEEE
Confidence 666543 468888777633223 45556553 22233344444434444677777654 44556543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.35 E-value=0.034 Score=46.30 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.8
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
||+|+|||.||+..|..|.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~ 22 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEA 22 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHT
T ss_pred CEEEECCcHHHHHHHHHHHhC
Confidence 699999999999999888653
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.34 E-value=0.5 Score=42.34 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=66.0
Q ss_pred CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCc
Q 009519 315 GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (533)
Q Consensus 315 g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~ 394 (533)
+..|.+ ++|.|+|.|..|..+|+++... |+ +++.+|+... ..... .
T Consensus 40 ~~~l~~---ktvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~~----~~~~~-----------~---- 85 (199)
T d1dxya1 40 GKELGQ---QTVGVMGTGHIGQVAIKLFKGF-----GA-------KVIAYDPYPM----KGDHP-----------D---- 85 (199)
T ss_dssp CCCGGG---SEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSCC----SSCCT-----------T----
T ss_pred cccccc---eeeeeeeccccccccccccccc-----ce-------eeeccCCccc----hhhhc-----------c----
Confidence 344555 9999999999999999999765 33 7888887411 10000 0
Q ss_pred cCCCCHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 395 REGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
....+|.|.++. .|+++=. ...-+.|+++.++.|. +..++.=.|...-
T Consensus 86 ~~~~~l~~l~~~--~D~v~~~~plt~~T~~li~~~~l~~mk----~~a~lIN~aRG~v 137 (199)
T d1dxya1 86 FDYVSLEDLFKQ--SDVIDLHVPGIEQNTHIINEAAFNLMK----PGAIVINTARPNL 137 (199)
T ss_dssp CEECCHHHHHHH--CSEEEECCCCCGGGTTSBCHHHHHHSC----TTEEEEECSCTTS
T ss_pred hhHHHHHHHHHh--cccceeeecccccccccccHHHhhccC----CceEEEecccHhh
Confidence 123579999988 8888744 2224899999999993 6888888776554
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=92.20 E-value=0.046 Score=47.40 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=66.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||.-|..+|..|+.. |+- ..+.++|.+==..++. -+|.+.. .+..+.. ....+.+
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~-----~~~-----~elvL~D~~~~~~~g~a~Dl~~a~-~~~~~~~-----~~~~d~~- 68 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ-----GIA-----EEFVIVDVVKDRTKGDALDLEDAQ-AFTAPKK-----IYSGEYS- 68 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHHHHHHHHHHGGG-GGSCCCE-----EEECCGG-
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCC-----cEEEEeecccchhHHHHHHHhccc-cccCCce-----EeeccHH-
Confidence 6999999999999999988764 442 4799999531101100 0121111 1111110 0123444
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++ +|++|=+.+.+ |- .-+++++.+++ ++++.||.-.|||.. .....+++.+
T Consensus 69 ~~~~--adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~-~~p~aivivvtNPvd---v~t~~~~k~s 135 (146)
T d1ez4a1 69 DCKD--ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD-SGFDGIFLVAANPVD---ILTYATWKFS 135 (146)
T ss_dssp GGTT--CSEEEECCCC----------CHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHH---HHHHHHHHHH
T ss_pred Hhcc--ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEeCCccH---HHHHHHHHHH
Confidence 4566 89887544332 21 22466777754 899999999999985 4444555543
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.11 E-value=0.037 Score=47.94 Aligned_cols=124 Identities=18% Similarity=0.306 Sum_probs=71.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|..|+.. |+. ..+.|+|.+-=...+. -+|.+.. .|....... ...+ .+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~-----~l~-----~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~~~----~~~d-~~ 70 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQ-----GIA-----DEIVLIDANESKAIGDAMDFNHGK-VFAPKPVDI----WHGD-YD 70 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHHHHHHHHHHHHT-TSSSSCCEE----EECC-GG
T ss_pred CeEEEECcCHHHHHHHHHHHhc-----CCC-----ceEEEEeeccccccchhccHhhCc-cccCCCeEE----EECC-HH
Confidence 6999999999999999888653 553 4799999631100100 1232211 121111000 0122 35
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC---cE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE---NI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G---ra 465 (533)
++++ +|++|=+.+.+ |- .-+++++.+++ ++++-+|.-.|||.. +...-+++.| | .-
T Consensus 71 ~l~d--aDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~-~~p~a~~ivvtNPvd---~~t~~~~k~s-g~p~~r 143 (148)
T d1ldna1 71 DCRD--ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMA-SGFQGLFLVATNPVD---ILTYATWKFS-GLPHER 143 (148)
T ss_dssp GTTT--CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHH-HTCCSEEEECSSSHH---HHHHHHHHHH-TCCGGG
T ss_pred Hhcc--ceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHh-hCCCceEEEecCccH---HHHHHHHHHH-CcChhh
Confidence 5666 88887443332 21 22566777754 889999999999996 4555566654 3 24
Q ss_pred EEecC
Q 009519 466 VFASG 470 (533)
Q Consensus 466 i~AtG 470 (533)
||.||
T Consensus 144 ViG~G 148 (148)
T d1ldna1 144 VIGSG 148 (148)
T ss_dssp EEECT
T ss_pred eecCC
Confidence 55654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.01 E-value=0.15 Score=49.40 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=76.5
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh--hccccccCC--c
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA--APFAKDPGD--F 391 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k--~~~A~~~~~--~ 391 (533)
.+|++ .||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .++..+ ....+...- .
T Consensus 32 ~~L~g---ktvaIqGfGnVG~~~A~~L~e~-----Ga------kvv~vsD~~G~i~~~~-Gld~~~L~~~~~~~~~~~~~ 96 (293)
T d1hwxa1 32 PGFGD---KTFAVQGFGNVGLHSMRYLHRF-----GA------KCVAVGESDGSIWNPD-GIDPKELEDFKLQHGTILGF 96 (293)
T ss_dssp SSSTT---CEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEEETTEEECCTT-CCCHHHHHHHHHTTSSSTTC
T ss_pred CCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEccchhhcccc-ccchHHHHHHHHHcCCeecc
Confidence 45666 9999999999999999999864 43 4567889999998764 233222 111111000 0
Q ss_pred CC-ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhcccCC
Q 009519 392 MG-LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFKHAGE 463 (533)
Q Consensus 392 ~~-~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~wt~G 463 (533)
.+ .....+ +-..+.||||=+.. .+.+|++.++.+ .-.+|.--+| |+. .| +++.+. ..|
T Consensus 97 ~~~~~~~~~----~~~~~~DIliPaA~-~~~I~~~~a~~l-----~ak~I~EgAN~P~t-~e--A~~~L~-~~g 156 (293)
T d1hwxa1 97 PKAKIYEGS----ILEVDCDILIPAAS-EKQLTKSNAPRV-----KAKIIAEGANGPTT-PQ--ADKIFL-ERN 156 (293)
T ss_dssp TTSCBCCSC----GGGCCCSEEEECSS-SSCBCTTTGGGC-----CCSEEECCSSSCBC-HH--HHHHHH-HTT
T ss_pred cccccCCcc----cccCCccEEeeccc-cccccHHHHHHH-----hhCEEeccCCCCCC-cc--hHHHHH-HCC
Confidence 00 001122 33468999997764 799999999987 3459999998 765 23 345444 344
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.93 E-value=0.067 Score=46.80 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|++.+++-.+.++++ .+++|+|||.++-+|+..| . +. ++|+++++
T Consensus 3 ~G~~~~l~~~~~~~~~---k~vlIlGaGG~arai~~aL----~---~~------~~i~I~nR 48 (177)
T d1nvta1 3 IGARMALEEEIGRVKD---KNIVIYGAGGAARAVAFEL----A---KD------NNIIIANR 48 (177)
T ss_dssp HHHHHHHHHHHCCCCS---CEEEEECCSHHHHHHHHHH----T---SS------SEEEEECS
T ss_pred HHHHHHHHHhCCCcCC---CEEEEECCcHHHHHHHHHH----c---cc------cceeeehh
Confidence 5889999988889999 9999999998877765443 2 11 47998877
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=91.93 E-value=0.037 Score=47.97 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=70.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||.-|..+|..++. .|+- ..+.|+|.+-=..++. -+|.+. ..|..... . ....+. |
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~-----~~l~-----~ElvL~D~~~~~~~g~a~Dl~~a-~~~~~~~~-i---~~~~~~-~ 65 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQ-----RGIA-----REIVLEDIAKERVEAEVLDMQHG-SSFYPTVS-I---DGSDDP-E 65 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTCC-----SEEEEECSSHHHHHHHHHHHHHT-GGGSTTCE-E---EEESCG-G
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----cEEEEEEeccccchhHHHHHHhc-cccCCCce-e---ecCCCH-H
Confidence 589999999999999988864 3553 5799999642111111 123221 22322111 0 012333 4
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
+++. .|++|=+.+.+ |- .-+++++.+++ ++++.|+.--|||.. +...-+++++
T Consensus 66 ~~~d--aDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~-~~p~ai~ivvtNPvD---vmt~~~~~~s 132 (143)
T d1llda1 66 ICRD--ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVK-VAPNAIYMLITNPVD---IATHVAQKLT 132 (143)
T ss_dssp GGTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSHH---HHHHHHHHHH
T ss_pred HhhC--CcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHh-hCCCeEEEEeCCchH---HHHHHHHHHH
Confidence 5766 89988555543 21 22445566654 888999999999985 6667777764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=91.45 E-value=0.074 Score=45.32 Aligned_cols=106 Identities=22% Similarity=0.294 Sum_probs=60.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||.-|..+|.+|.. .|+- ..+.|+|.+-=..... -++.+.. .+......+ ...+..|+
T Consensus 2 KI~IIGaG~VG~~la~~l~~-----~~l~-----~el~L~Di~~~~~~~~~~d~~~~~-~~~~~~~~i----~~~~~~~~ 66 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAE-----KQLA-----RELVLLDVVEGIPQGKALDMYESG-PVGLFDTKV----TGSNDYAD 66 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTCC-----SEEEEECSSSSHHHHHHHHHHTTH-HHHTCCCEE----EEESCGGG
T ss_pred EEEEECcCHHHHHHHHHHHh-----CCCC-----ceEEEeccccccchhhhhhhhccc-chhcccceE----EecCCHHH
Confidence 89999999999998877764 3552 4799999632111100 0111111 111111111 11233556
Q ss_pred hcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.++ .|++|=+.+.+ |- .-+++++.+++ ++++.|++=.|||..
T Consensus 67 ~~d--advvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~-~~p~aivivvtNPvd 122 (142)
T d1guza1 67 TAN--SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HSKNPIIIVVSNPLD 122 (142)
T ss_dssp GTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCSSCEEEECCSSHH
T ss_pred hcC--CeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhc-cCCCeEEEEecCChH
Confidence 666 78877444332 31 23567777754 889999999999985
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.41 E-value=0.055 Score=47.97 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=27.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|.+|.+ .|+ ++.++|+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRD-----AGV-------DVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCC
Confidence 799999999999999998765 465 68899863
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.32 E-value=0.044 Score=47.13 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~-----~G~-------~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKI-----HGL-------NVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----TSC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 689999999999999998865 454 57777764
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=91.19 E-value=0.3 Score=44.09 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=65.2
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|.+++|.|+|.|..|..+|+++... |+ +|+.+|... .+... ... ....+
T Consensus 40 el~gk~vgIiG~G~IG~~va~~l~~f-----g~-------~V~~~d~~~---------~~~~~---~~~------~~~~~ 89 (197)
T d1j4aa1 40 EVRDQVVGVVGTGHIGQVFMQIMEGF-----GA-------KVITYDIFR---------NPELE---KKG------YYVDS 89 (197)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC---------CHHHH---HTT------CBCSC
T ss_pred cccCCeEEEecccccchhHHHhHhhh-----cc-------cccccCccc---------ccccc---cce------eeecc
Confidence 34449999999999999999999654 33 688787531 11110 000 11357
Q ss_pred HHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 400 LLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 400 L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
|.|+++. .|+++=. ...-+.|+++.++.|. +..++.-.|.-.-
T Consensus 90 l~~~l~~--sDii~~~~plt~~T~~li~~~~l~~mk----~~a~lIN~sRG~i 136 (197)
T d1j4aa1 90 LDDLYKQ--ADVISLHVPDVPANVHMINDESIAKMK----QDVVIVNVSRGPL 136 (197)
T ss_dssp HHHHHHH--CSEEEECSCCCGGGTTCBSHHHHHHSC----TTEEEEECSCGGG
T ss_pred ccccccc--cccccccCCccccccccccHHHHhhhC----CccEEEecCchhh
Confidence 9999988 8998843 2235899999999994 6788887776554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=91.08 E-value=0.054 Score=47.00 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=65.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-----CCCChhhhccccccCCcCCccCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-----KNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-----~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.||.|+|||..|..+|..|+.. |+- ..+.|+|.+ +++ -+|.+....+-.+.. ....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~-----~~~-----~elvL~Di~----~~~~~g~~~Dl~~a~~~~~~~~~-----~~~~ 62 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ-----GVA-----DDYVFIDAN----EAKVKADQIDFQDAMANLEAHGN-----IVIN 62 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSS----HHHHHHHHHHHHHHGGGSSSCCE-----EEES
T ss_pred CeEEEECcCHHHHHHHHHHHhc-----CCC-----ceEEEEecc----cchhhhHHHhhhccccccCCccc-----eecc
Confidence 6999999999999998888753 442 479999953 121 122221111111100 0112
Q ss_pred CHHHHhcccCCcEEEEeccC-------CC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcc
Q 009519 399 SLLEVVRKVKPHVLLGLSGV-------GG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 460 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~-------~g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~w 460 (533)
+ .+.+++ .|++|=+.+. +| .+-+++.+.+++ +++++||+--|||.. +...-+++.
T Consensus 63 d-~~~l~~--adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~-~~p~aivivvtNPvD---~~t~~~~k~ 135 (146)
T d1hyha1 63 D-WAALAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE-SGFHGVLVVISNPVD---VITALFQHV 135 (146)
T ss_dssp C-GGGGTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHH---HHHHHHHHH
T ss_pred C-HHHhcc--ccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEecCcHH---HHHHHHHHH
Confidence 2 344666 8998733331 12 123567777754 899999999999984 445555554
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.79 E-value=0.34 Score=42.98 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
|.+++|.|+|.|..|..+|+++....+ +++.+|+.- ++ .. + ....+|
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~------------~v~~~d~~~-----~~------------~~-~---~~~~~l 86 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGA------------QVRGFSRTP-----KE------------GP-W---RFTNSL 86 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTC------------EEEEECSSC-----CC------------SS-S---CCBSCS
T ss_pred ccCceEEEeccccccccceeeeecccc------------ccccccccc-----cc------------cc-e---eeeech
Confidence 555999999999999999998876533 788888641 00 00 0 123569
Q ss_pred HHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 401 LEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.|+++. .|+++-.- ..-+.|+++.++.|. +..|+.=.|...
T Consensus 87 ~ell~~--sDiv~~~~pl~~~t~~li~~~~l~~mk----~~ailIN~~RG~ 131 (181)
T d1qp8a1 87 EEALRE--ARAAVCALPLNKHTRGLVKYQHLALMA----EDAVFVNVGRAE 131 (181)
T ss_dssp HHHHTT--CSEEEECCCCSTTTTTCBCHHHHTTSC----TTCEEEECSCGG
T ss_pred hhhhhc--cchhhcccccccccccccccceeeecc----ccceEEeccccc
Confidence 999988 89988532 123899999999993 688888777543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=90.72 E-value=0.68 Score=41.42 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..+++.|+|.|..|-.+|+.+... |+ +++..|+.. .. ......-. ....+
T Consensus 46 eL~gktvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~----~~---~~~~~~~~---------~~~~~ 97 (193)
T d1mx3a1 46 RIRGETLGIIGLGRVGQAVALRAKAF-----GF-------NVLFYDPYL----SD---GVERALGL---------QRVST 97 (193)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECTTS----CT---THHHHHTC---------EECSS
T ss_pred eeeCceEEEeccccccccceeeeecc-----cc-------ceeeccCcc----cc---cchhhhcc---------ccccc
Confidence 34449999999999999999998765 33 677777631 11 11110000 12357
Q ss_pred HHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 400 LLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 400 L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
|.|+++. .|+++=. ....+.++++.++.|. +..|+.=.|.-.-
T Consensus 98 l~~ll~~--sD~i~~~~plt~~T~~li~~~~l~~mk----~~a~lIN~sRG~i 144 (193)
T d1mx3a1 98 LQDLLFH--SDCVTLHCGLNEHNHHLINDFTVKQMR----QGAFLVNTARGGL 144 (193)
T ss_dssp HHHHHHH--CSEEEECCCCCTTCTTSBSHHHHTTSC----TTEEEEECSCTTS
T ss_pred hhhcccc--CCEEEEeecccccchhhhhHHHHhccC----CCCeEEecCCceE
Confidence 9999988 8888632 2234899999999993 6888888777554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.28 E-value=0.097 Score=46.36 Aligned_cols=32 Identities=34% Similarity=0.596 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~-----G~-------~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA-----GH-------QVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH-----TC-------EEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEeCC
Confidence 6999999999999999988764 53 56666654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=90.28 E-value=0.21 Score=46.48 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 299 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 299 TaaV~LAgli~Alr~~--g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
||-=+..++..+++.. +.+|+. .||+|-|.|..|..+|++|.+. |. +++.+|-+. ..
T Consensus 16 Tg~GV~~~~~~~~~~~~g~~~l~g---~~v~IqG~GnVG~~~a~~L~~~-----Ga-------kvv~~d~~~------~~ 74 (230)
T d1leha1 16 TAYGVYRGMKAAAKEAFGSDSLEG---LAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVNK------AA 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTT---CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCH------HH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEeecccH------HH
Confidence 3433444555666544 456777 9999999999999999999764 42 566665421 11
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CCCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NPTM 448 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NPt~ 448 (533)
+...+..+-.. ..+.. .+-.++.|||+=++. +|++|++.+..+. -.||.--+ ||..
T Consensus 75 ~~~~~~~~g~~---------~~~~~-~~~~~~cDIl~PcA~-~~~I~~~~~~~l~-----ak~Ive~ANn~~t 131 (230)
T d1leha1 75 VSAAVAEEGAD---------AVAPN-AIYGVTCDIFAPCAL-GAVLNDFTIPQLK-----AKVIAGSADNQLK 131 (230)
T ss_dssp HHHHHHHHCCE---------ECCGG-GTTTCCCSEEEECSC-SCCBSTTHHHHCC-----CSEECCSCSCCBS
T ss_pred HHHHHHhcCCc---------ccCCc-ccccccccEeccccc-ccccChHHhhccC-----ccEEEecccCCCC
Confidence 22222211111 11112 234568999997775 8999999999993 45999999 6654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.057 Score=49.40 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=32.5
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|++ .||+|+|+|.-|.-+|..|+.+++ ++|.++|.+
T Consensus 27 kL~~---~~VliiG~GglGs~va~~La~~Gv-----------g~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKD---SRVLIVGLGGLGCAASQYLASAGV-----------GNLTLLDFD 63 (247)
T ss_dssp HHHH---CEEEEECCSHHHHHHHHHHHHHTC-----------SEEEEECCC
T ss_pred HHhC---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCc
Confidence 3566 999999999999999999988755 799999975
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.22 E-value=0.46 Score=41.98 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|.+.++.|+|.|..|..+|+++....+ +++.+|+... .-...+..-. ....+
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~------------~v~~~d~~~~------~~~~~~~~~~---------~~~~~ 93 (188)
T d2naca1 41 DLEAMHVGTVAAGRIGLAVLRRLAPFDV------------HLHYTDRHRL------PESVEKELNL---------TWHAT 93 (188)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTC------------EEEEECSSCC------CHHHHHHHTC---------EECSS
T ss_pred eccccceeeccccccchhhhhhhhccCc------------eEEEEeeccc------cccccccccc---------cccCC
Confidence 3444999999999999999999876532 6888887421 0111111111 12367
Q ss_pred HHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcc-cCCcEE
Q 009519 400 LLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH-AGENIV 466 (533)
Q Consensus 400 L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~w-t~Grai 466 (533)
|.|.++. .|+++=. ...-+.|+++.++.|. +..++.=.|.-.- +..++.+++ .+|+.-
T Consensus 94 l~~~l~~--sD~v~~~~plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~i---vd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 94 REDMYPV--CDVVTLNCPLHPETEHMINDETLKLFK----RGAYIVNTARGKL---CDRDAVARALESGRLA 156 (188)
T ss_dssp HHHHGGG--CSEEEECSCCCTTTTTCBSHHHHTTSC----TTEEEEECSCGGG---BCHHHHHHHHHTTSEE
T ss_pred HHHHHHh--ccchhhcccccccchhhhHHHHHHhCC----CCCEEEecCchhh---hhHHHHHHHHhCCCce
Confidence 9999988 8998642 1224899999999993 7889998887665 444444443 255543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.06 E-value=0.09 Score=44.77 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=28.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
.||+|+|||.||+..|..|.+ .|+ +.+.++|+...
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~-----~G~------~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLAR-----LGY------SDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC------CCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHH-----CCC------CeEEEEEecCc
Confidence 699999999999999988876 465 35778887543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.80 E-value=0.14 Score=43.70 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=66.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||.-|..+|..|+. .|+- +.+.|+|.+ +.+....-++.+ -.+|..... ...+..++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~~~Dl~~-~~~~~~~~~------~~~~~~~~ 64 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLM-----KGFA-----REMVLIDVDKKRAEGDALDLIH-GTPFTRRAN------IYAGDYAD 64 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----HTCC-----SEEEEECSSHHHHHHHHHHHHH-HGGGSCCCE------EEECCGGG
T ss_pred EEEEECcCHHHHHHHHHHHh-----CCCC-----CEEEEEecccccccchhccccc-ccccccccc------ccCCcHHH
Confidence 89999999999998877654 2442 479999963 111100001211 112222111 11223456
Q ss_pred hcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
+++ +|++|=+.+.+ |- .-+++++.+++ ++++.+|+-.|||.. ....-+++.+
T Consensus 65 ~~~--adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~-~~p~aivivvtNPvd---~~t~~~~k~s 130 (140)
T d1a5za1 65 LKG--SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSK-YAPDSIVIVVTNPVD---VLTYFFLKES 130 (140)
T ss_dssp GTT--CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSSHH---HHHHHHHHHH
T ss_pred hcC--CCEEEEecccccCCCcchhhhhccccchHHHHHHHHHh-cCCCcEEEEeCCcHH---HHHHHHHHHH
Confidence 777 89887554433 21 23456677754 899999999999974 4555565543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=89.60 E-value=0.21 Score=42.34 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=63.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|+|..|.++++-|+.. |- .+|+++|+. . +.+...++++.-. -..+..+ +
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~-----~~------~~i~v~~r~----~--~~~~~l~~~~~~~--------~~~~~~~-v 55 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQ-----GG------YRIYIANRG----A--EKRERLEKELGVE--------TSATLPE-L 55 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----CS------CEEEEECSS----H--HHHHHHHHHTCCE--------EESSCCC-C
T ss_pred EEEEEcCcHHHHHHHHHHHHC-----CC------CcEEEEeCC----h--hHHHHhhhhcccc--------ccccccc-c
Confidence 799999999999999987764 21 478888773 1 1122222222110 0112222 4
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLG 479 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~ 479 (533)
+. .|++| ++..|.. -+++++.+ ....++|..+....+ .++.-++..+..-++-.-|..|+.+.
T Consensus 56 ~~--~Div~-lavkP~~-~~~v~~~l---~~~~~~viS~~ag~~-----~~~l~~~l~~~~~iir~mpn~p~~~~ 118 (152)
T d1yqga2 56 HS--DDVLI-LAVKPQD-MEAACKNI---RTNGALVLSVAAGLS-----VGTLSRYLGGTRRIVRVMPNTPGKIG 118 (152)
T ss_dssp CT--TSEEE-ECSCHHH-HHHHHTTC---CCTTCEEEECCTTCC-----HHHHHHHTTSCCCEEEEECCGGGGGT
T ss_pred cc--cceEE-EecCHHH-HHHhHHHH---hhcccEEeecccCCC-----HHHHHHHhCcCcceEeecccchhHhc
Confidence 44 67776 4433211 12233333 234678887776665 34444555444434445677777774
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=89.39 E-value=0.12 Score=44.95 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=60.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||+.|...+-..+.... .- ..-..+.|+|.+ .++.. ..+.....+....+. .-..+..|+
T Consensus 2 KIaiIGaGs~g~~~~~~~l~~~~--~~----~~~~el~L~Did----~~k~~~~~d~~~~~~~~~~~~---~~t~~~~~~ 68 (162)
T d1up7a1 2 RIAVIGGGSSYTPELVKGLLDIS--ED----VRIDEVIFYDID----EEKQKIVVDFVKRLVKDRFKV---LISDTFEGA 68 (162)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHT--TT----SCCCEEEEECSC----HHHHHHHHHHHHHHHTTSSEE---EECSSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhcc--cc----cCccEEEEEecC----cHHHHHHHHHHHhhhccCceE---EEecCcccc
Confidence 89999999988777654443322 11 112479999964 11210 001111111111110 123568999
Q ss_pred hcccCCcEEEEeccCC---------------CCCCHH-------------------HHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVG---------------GVFNEE-------------------VLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---------------g~Ftee-------------------vv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++ +|++|=..+.+ |.+..+ +.+ |.+ .+++.+++=.|||..
T Consensus 69 l~~--aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~-~~p~a~~i~vtNPvd 143 (162)
T d1up7a1 69 VVD--AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVR-KTSNATIVNFTNPSG 143 (162)
T ss_dssp HTT--CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHH-HTTCCEEEECSSSHH
T ss_pred cCC--CCEEEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhc-cCCCeEEEEeCCHHH
Confidence 998 89988555544 333322 334 433 689999999999975
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.95 E-value=0.12 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||+|+|||-||+..|..|.++
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~ 27 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF 27 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT
T ss_pred CcEEEECCCHHHHHHHHHHHhC
Confidence 6899999999999999998753
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.2 Score=43.26 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=61.8
Q ss_pred eEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+| ||.-|..+|-+|... .++- ..+.|+|.+... .+. -+|++.. .+.... .. ...+..+
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~----~~~~-----~el~L~D~~~~~-~g~a~Dl~h~~-~~~~~~-~~----~~~~~~~ 65 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQ----LPSG-----SELSLYDIAPVT-PGVAVDLSHIP-TAVKIK-GF----SGEDATP 65 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH----SCTT-----CEEEEECSSTTH-HHHHHHHHTSC-SSCEEE-EE----CSSCCHH
T ss_pred EEEEEcCCChHHHHHHHHHHhC----CCCC-----cEEEEecccccc-hhHHHHHHCCc-cccCCc-EE----EcCCCcc
Confidence 899999 599999998777542 3332 469999964321 111 0121110 011100 00 1123355
Q ss_pred HhcccCCcEEEEeccCC---C-----C------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVG---G-----V------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g-----~------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++++ .|++|=+++.+ | + .-+++.+.+++ +++..||+--|||..
T Consensus 66 ~~~~--aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~-~~p~aivivvtNPvD 122 (145)
T d2cmda1 66 ALEG--ADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAK-TCPKACIGIITNPVN 122 (145)
T ss_dssp HHTT--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECSSSHH
T ss_pred ccCC--CCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCCch
Confidence 6877 89988666543 2 1 23556666654 889999999999985
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=88.90 E-value=0.49 Score=42.25 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHh---------CC-------C--CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 009519 299 TAGVALAGLLGTVRAQ---------GL-------S--LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (533)
Q Consensus 299 TaaV~LAgli~Alr~~---------g~-------~--l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~ 360 (533)
||=-+++-+++.+|-. |. + -.+|...++.|+|.|..|..+|+++... |+ +
T Consensus 5 vAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~f-----g~-------~ 72 (191)
T d1gdha1 5 TAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGF-----DM-------D 72 (191)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------E
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhh-----cc-------c
Confidence 4556677777776632 10 1 1244459999999999999999988765 32 6
Q ss_pred EEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCC
Q 009519 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSV 436 (533)
Q Consensus 361 i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~e 436 (533)
+..+|..-- .-........ ....+|.|+++. .|+++=. ...-+.|+++.++.|. +
T Consensus 73 v~~~d~~~~------~~~~~~~~~~---------~~~~~l~~ll~~--sD~v~l~~plt~~T~~li~~~~l~~mk----~ 131 (191)
T d1gdha1 73 IDYFDTHRA------SSSDEASYQA---------TFHDSLDSLLSV--SQFFSLNAPSTPETRYFFNKATIKSLP----Q 131 (191)
T ss_dssp EEEECSSCC------CHHHHHHHTC---------EECSSHHHHHHH--CSEEEECCCCCTTTTTCBSHHHHTTSC----T
T ss_pred ccccccccc------ccchhhcccc---------cccCCHHHHHhh--CCeEEecCCCCchHhheecHHHhhCcC----C
Confidence 777775311 1111111111 123579999998 8988632 2234899999999993 6
Q ss_pred CCeEEecCCCCCcccCCHHHHhcccCCcEE
Q 009519 437 KPAIFAMSNPTMNAECTAADAFKHAGENIV 466 (533)
Q Consensus 437 rPIIFaLSNPt~~aE~tpe~A~~wt~Grai 466 (533)
..++.=.|.-.---|-.--+|++ +|+.-
T Consensus 132 ~a~lIN~sRG~ivde~aL~~aL~--~g~i~ 159 (191)
T d1gdha1 132 GAIVVNTARGDLVDNELVVAALE--AGRLA 159 (191)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHH--HTSEE
T ss_pred ccEEEecCCccchhhHHHHHHHH--cCCce
Confidence 78888777654422222233333 56644
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.49 E-value=0.14 Score=42.06 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=27.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.||||+|||.||+-+|..|.+. |- ..+|.++|++-
T Consensus 3 krivIvGgG~~G~e~A~~l~~~-----~~-----~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLA-----DP-----SIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHc-----CC-----CCcEEEEECCC
Confidence 6999999999999999888654 31 14788888754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.40 E-value=0.56 Score=38.16 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=51.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh-ccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-PFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~-~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||+|+|+|..|..+|+.|.+. |. .++++|.+=-... .+.+.-. .+.-+. .+...|.++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~-----g~-------~vvvid~d~~~~~---~~~~~~~~~~~gd~------~~~~~l~~a 60 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRM-----GH-------EVLAVDINEEKVN---AYASYATHAVIANA------TEENELLSL 60 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-----TC-------CCEEEESCHHHHH---HTTTTCSEEEECCT------TCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC-----CC-------eEEEecCcHHHHH---HHHHhCCcceeeec------ccchhhhcc
Confidence 799999999999999999764 43 6888887411111 1111100 111111 122446665
Q ss_pred -hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 404 -VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 404 -V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
+++ ++++|-+.+ .--...++-.|.++....|-|++.+|
T Consensus 61 ~i~~--a~~vi~~~~--~~~~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 61 GIRN--FEYVIVAIG--ANIQASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp TGGG--CSEEEECCC--SCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCcc--ccEEEEEcC--chHHhHHHHHHHHHHcCCCcEEeecc
Confidence 555 787776543 22222333333333455666777665
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.46 E-value=0.17 Score=43.37 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=65.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||.-|..+|.+|... |+- ..+.|+|.+-=..++. -+|++....+-... .. ....+ .|+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~-----~~~-----~elvL~Di~~~~~~g~alDl~~~~~~~~~~~-~i---~~~~d-~~~ 66 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLN-----LDV-----DEIALVDIAEDLAVGEAMDLAHAAAGIDKYP-KI---VGGAD-YSL 66 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SCC-----SEEEEECSSHHHHHHHHHHHHHHHHTTTCCC-EE---EEESC-GGG
T ss_pred EEEEECcCHHHHHHHHHHHhc-----CcC-----ceEEEEecccchhhHHHHHHhhhccccCCCC-cc---ccCCC-HHH
Confidence 899999999999999876652 442 4699999531001110 12322211111111 00 01233 356
Q ss_pred hcccCCcEEEEecc---CCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcc
Q 009519 404 VRKVKPHVLLGLSG---VGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 460 (533)
Q Consensus 404 V~~vkptvLIG~S~---~~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~w 460 (533)
++. .|++|=+.+ .+|- .=+++.+.+.+ ++++.|++--|||.. +...-++++
T Consensus 67 ~~~--adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~-~~p~aivivvtNPvD---~~t~~~~k~ 131 (142)
T d1ojua1 67 LKG--SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVE-NAPESKILVVTNPMD---VMTYIMWKE 131 (142)
T ss_dssp GTT--CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHT-TSTTCEEEECSSSHH---HHHHHHHHH
T ss_pred hcc--ccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHh-hCCCcEEEEecCChH---HHHHHHHHH
Confidence 777 888874433 2332 22456666753 899999999999974 444455554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.98 E-value=0.3 Score=42.67 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=54.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec--c-Ccc---ccCCCCCChhhhccccccCCcCCccCCC
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK--D-GLI---TKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~--~-GLi---~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
||.|+|||+-|+++|..|.+. | .++++..+ + -.+ -..|.+ +..+..+- .. . .....
T Consensus 2 kI~ViGaG~~GtalA~~la~~-----g-------~~V~l~~r~~~~~~~~~i~~~~~~-~~~~~~~~-~~-~---i~~~~ 63 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTEILKSISAGREH-PRLGVKLN-GV-E---IFWPE 63 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHHHHHHHHTTCCB-TTTTBCCC-SE-E---EECGG
T ss_pred EEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEEecccHHHHHHHhhhhhh-hhhcchhc-cc-c---ccccc
Confidence 799999999999999999764 3 25655532 1 011 011110 00010000 00 0 01235
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa 442 (533)
++.++++. .|++|=+ +|-...+++++.+..-..+.+||+.
T Consensus 64 ~~~~~~~~--ad~Ii~a--vps~~~~~~~~~l~~~l~~~~ii~~ 103 (180)
T d1txga2 64 QLEKCLEN--AEVVLLG--VSTDGVLPVMSRILPYLKDQYIVLI 103 (180)
T ss_dssp GHHHHHTT--CSEEEEC--SCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred cHHHHHhc--cchhhcc--cchhhhHHHHHhhccccccceeccc
Confidence 79999988 7887532 2455778999988654555666654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=86.92 E-value=0.16 Score=48.25 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=27.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||+|+|||-+|+.+|..|.+ .| .++.++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k-----~G-------~~V~viEk~ 34 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAE-----KG-------HQVHIIDQR 34 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-----TT-------CEEEEEESS
T ss_pred CCEEEEECCcHHHHHHHHHHHh-----CC-------CCEEEEECC
Confidence 3899999999999999998875 34 367788765
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=86.80 E-value=0.38 Score=41.36 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=64.8
Q ss_pred eEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC---ccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G---Li~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
||.|+| ||.-|..+|-+|.. .|+. ..+.|+|.+. ...-..-+|.+. ..|...... ...+.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~-----~~l~-----~el~L~Di~~~~~~~~g~a~Dl~~~-~~~~~~~~i-----~~~~~ 65 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIAL-----RDIA-----DEVVFVDIPDKEDDTVGQAADTNHG-IAYDSNTRV-----RQGGY 65 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TTCC-----SEEEEECCGGGHHHHHHHHHHHHHH-HTTTCCCEE-----EECCG
T ss_pred eEEEECCCCcHHHHHHHHHHh-----CCCC-----CEEEEEecCCcccccceeecchhhc-ccccCCceE-----eeCCH
Confidence 899999 69999999988864 3554 4799999521 110000122221 122211100 11233
Q ss_pred HHHhcccCCcEEE---EeccCCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhc
Q 009519 401 LEVVRKVKPHVLL---GLSGVGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 401 ~e~V~~vkptvLI---G~S~~~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~ 459 (533)
+ .+++ .|++| |.+..+|- .=+++++.++ +++++.|+.-.|||.. +....+++
T Consensus 66 ~-~~~~--aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~-~~~p~~i~ivvtNPvD---vmt~~~~k 131 (142)
T d1o6za1 66 E-DTAG--SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLD-EHNDDYISLTTSNPVD---LLNRHLYE 131 (142)
T ss_dssp G-GGTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHH-TTCSCCEEEECCSSHH---HHHHHHHH
T ss_pred H-Hhhh--cCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHH-hcCCCceEEEecChHH---HHHHHHHH
Confidence 3 3455 89988 55555553 1145566665 4889999999999984 44444444
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.46 E-value=0.46 Score=40.13 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 307 li~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.++|++..+-+..| +|+|+|+|..|...+.++.. .| .+++.+|+
T Consensus 16 a~~al~~~~~~~g~----~VlV~GaG~vG~~~~~~ak~-----~G-------~~Vi~~~~ 59 (166)
T d1llua2 16 VYKGLKQTNARPGQ----WVAISGIGGLGHVAVQYARA-----MG-------LHVAAIDI 59 (166)
T ss_dssp HHHHHHHHTCCTTC----EEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEES
T ss_pred HHHHHHHhCCCCCC----EEEEeeccccHHHHHHHHHH-----cC-------Cccceecc
Confidence 46888887766554 99999999998887655543 24 26888876
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=86.21 E-value=0.49 Score=42.09 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++--++..+.+++. ++++|+|.+. .|.-+|.||.. .|. .++.|+++.
T Consensus 18 PcTp~aI~~lL~~y~i~l~G---K~v~VIGrS~~VG~Pla~lL~~-----~ga-------tVt~~h~~t----------- 71 (166)
T d1b0aa1 18 PCTPRGIVTLLERYNIDTFG---LNAVVIGASNIVGRPMSMELLL-----AGC-------TTTVTHRFT----------- 71 (166)
T ss_dssp CHHHHHHHHHHHHTTCCCTT---CEEEEECCCTTTHHHHHHHHHT-----TTC-------EEEEECSSC-----------
T ss_pred CchHHHHHHHHHHcCccccc---ceEEEEeccccccHHHHHHHHH-----hhc-------ccccccccc-----------
Confidence 35778888888889999998 9999999986 78888777754 332 577776421
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.+|.+-+++ +|++|-..+.++.++.+++|
T Consensus 72 ------------------~~l~~~~~~--ADivI~a~G~p~~i~~~~vk 100 (166)
T d1b0aa1 72 ------------------KNLRHHVEN--ADLLIVAVGKPGFIPGDWIK 100 (166)
T ss_dssp ------------------SCHHHHHHH--CSEEEECSCCTTCBCTTTSC
T ss_pred ------------------chhHHHHhh--hhHhhhhccCcccccccccC
Confidence 236777777 99999999999999998876
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.20 E-value=1.6 Score=38.25 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh-hccccccCCcCCccCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGDFMGLREGA 398 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k-~~~A~~~~~~~~~~~~~ 398 (533)
+|...++.|+|.|..|..+|+++... |+ +|+.+|+.. .+.+ ..+. ....
T Consensus 41 ~l~~k~vgiiG~G~IG~~va~~~~~f-----g~-------~v~~~d~~~---------~~~~~~~~~---------~~~~ 90 (184)
T d1ygya1 41 EIFGKTVGVVGLGRIGQLVAQRIAAF-----GA-------YVVAYDPYV---------SPARAAQLG---------IELL 90 (184)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECTTS---------CHHHHHHHT---------CEEC
T ss_pred cccceeeeeccccchhHHHHHHhhhc-----cc-------eEEeecCCC---------ChhHHhhcC---------ceec
Confidence 34449999999999999999988654 32 788887631 1111 1110 0235
Q ss_pred CHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcc-cCCcEEEecCCCC
Q 009519 399 SLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH-AGENIVFASGSPF 473 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~w-t~Grai~AtGSPf 473 (533)
+|.|+++. .|+++=. ....+.|+++.++.|. +..++.=.|.-.- +.-++.+++ .+|+.-.|.=-=|
T Consensus 91 ~l~ell~~--sDiv~~~~Plt~~T~~lin~~~l~~mk----~~a~lIN~sRG~i---Vde~aL~~aL~~~~i~~a~lDV~ 161 (184)
T d1ygya1 91 SLDDLLAR--ADFISVHLPKTPETAGLIDKEALAKTK----PGVIIVNAARGGL---VDEAALADAITGGHVRAAGLDVF 161 (184)
T ss_dssp CHHHHHHH--CSEEEECCCCSTTTTTCBCHHHHTTSC----TTEEEEECSCTTS---BCHHHHHHHHHTSSEEEEEESSC
T ss_pred cHHHHHhh--CCEEEEcCCCCchhhhhhhHHHHhhhC----CCceEEEecchhh---hhhHHHHHHHhcCcEeEEEEeCC
Confidence 79999988 8998732 2234899999999993 6778887776554 333333332 3555433321222
Q ss_pred cceecCCCeeeecccccceeechhhh
Q 009519 474 ENVDLGNGKIGHVNQANNMYLFPGIG 499 (533)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (533)
++-..++ ..--+..|+.+-|=||
T Consensus 162 ~~EP~~~---~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 162 ATEPCTD---SPLFELAQVVVTPHLG 184 (184)
T ss_dssp SSSSCSC---CGGGGCTTEEECSSCS
T ss_pred CCCCCCC---chHhcCCCEEECCCCC
Confidence 2221211 1123455777766544
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.04 E-value=0.33 Score=42.65 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=26.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+|+|||.||+..|..|..+. .| -.|.++|+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~---~~-------~~V~v~e~~ 35 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHH---SR-------AHVDIYEKQ 35 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC---SS-------CEEEEECSS
T ss_pred eEEEECccHHHHHHHHHHHhcC---CC-------CeEEEEeCC
Confidence 8999999999999999998752 12 268888875
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=85.97 E-value=0.16 Score=43.77 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=24.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|+|||.||+..|..|.+ .|. ++.++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~-----~G~-------~V~vlE~~ 32 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRS-----RGT-------DAVLLESS 32 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHT-----TTC-------CEEEECSS
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 69999999999999998865 354 46677664
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.82 E-value=0.42 Score=41.54 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k 381 (533)
.+++.-+.|++..+.+..| +|+|+|||..|+..+.++.. .|. ++|+.+|+ ++.|
T Consensus 11 ~~~~ta~~a~~~a~~~~g~----~VlI~GaG~vGl~~~q~ak~-----~Ga------~~Vi~~d~-----------~~~r 64 (174)
T d1jqba2 11 DMMTTGFHGAELADIEMGS----SVVVIGIGAVGLMGIAGAKL-----RGA------GRIIGVGS-----------RPIC 64 (174)
T ss_dssp THHHHHHHHHHHTTCCTTC----CEEEECCSHHHHHHHHHHHT-----TTC------SCEEEECC-----------CHHH
T ss_pred hHHHHHHHHHHHhCCCCCC----EEEEEcCCcchhhhhhhhhc-----ccc------cccccccc-----------hhhh
Confidence 4567677888888776655 99999999888776555543 343 47998876 3445
Q ss_pred hccccccC--CcCCccCCCCHHHHhc----ccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 382 APFAKDPG--DFMGLREGASLLEVVR----KVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 382 ~~~A~~~~--~~~~~~~~~~L~e~V~----~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
..+|+.-. +.- .....++.+.+. +..+|+.|=+++.+..+ ++.++..+ ..-+-+++.+.+|
T Consensus 65 ~~~a~~lGa~~~i-~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~-~~a~~~~~--~~G~iv~~G~~~~ 131 (174)
T d1jqba2 65 VEAAKFYGATDIL-NYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETL-SQAVKMVK--PGGIISNINYHGS 131 (174)
T ss_dssp HHHHHHHTCSEEE-CGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHH-HHHHHHEE--EEEEEEECCCCCS
T ss_pred HHHHHhhCccccc-cccchhHHHHHHHHhhccCcceEEEccCCHHHH-HHHHHHHh--cCCEEEEEeecCC
Confidence 55554311 000 001123444333 33478888777644444 33444442 2334444444433
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=85.81 E-value=0.22 Score=47.15 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=30.1
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|.++ ..|+|+|||.+|+..|..|.+ .|+ ++.++|+.
T Consensus 3 ~p~~~---~dV~IIGAG~sGl~~a~~L~~-----~G~-------~v~i~Ek~ 39 (298)
T d1w4xa1 3 QPPEE---VDVLVVGAGFSGLYALYRLRE-----LGR-------SVHVIETA 39 (298)
T ss_dssp CCCSE---EEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CCCCC---CCEEEECccHHHHHHHHHHHh-----CCC-------CEEEEEcC
Confidence 45666 899999999999999998864 565 47888875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=85.68 E-value=0.43 Score=41.10 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=23.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.+|+|+|||+.|+..+.+... .|. ++|+.+|+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~-----~Ga------~~Vi~~~~ 61 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARS-----LGA------ENVIVIAG 61 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTB------SEEEEEES
T ss_pred CEEEEECCCccchhheecccc-----ccc------cccccccc
Confidence 699999999877766555543 343 58998887
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.39 E-value=0.22 Score=45.43 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=26.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|+|||.+|+.+|..|.+ .|. ++|.++|+.
T Consensus 3 dViIIGaGi~G~s~A~~La~-----~G~------~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVT-----RGW------NNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHH-----TTC------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCC------CcEEEEeCC
Confidence 79999999999999988764 354 369999986
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=85.35 E-value=0.39 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=29.2
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
|+|+|||.||+..|..|.+...++.|+ ++.++|++
T Consensus 10 V~IvGaG~aGl~lA~~La~~~~~~~G~-------~v~vlEr~ 44 (360)
T d1pn0a1 10 VLIVGAGPAGLMAARVLSEYVRQKPDL-------KVRIIDKR 44 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHSTTC-------CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHhcccccCCC-------cEEEEcCC
Confidence 899999999999999998865546787 57788864
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.11 E-value=0.23 Score=41.20 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=26.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
=+||+|||.+|+..|..|.+. | .++.++|++
T Consensus 7 DviViGaG~~Gl~~A~~La~~-----G-------~~V~vlE~~ 37 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVD-----G-------KKVLHIDKQ 37 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-----T-------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-----C-------CCEEEEcCC
Confidence 379999999999999988753 5 368899996
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.96 E-value=0.26 Score=43.97 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=26.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|..+.+ .|+ ++.++|+.
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~-----~G~-------~v~l~E~~ 81 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLME-----SGY-------TVHLTDTA 81 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred ceEEEEcccHHHHHHHHHHHH-----hcc-------ceeeEeec
Confidence 899999999999999998865 454 68888764
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.83 E-value=0.81 Score=40.64 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++--++..|-+++. ++++|+|.+. .|.-+|.||.. .| ..+..|+++
T Consensus 20 PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGrPLa~lL~~-----~g-------atVt~~~~~------------ 72 (170)
T d1a4ia1 20 PCTPKGCLELIKETGVPIAG---RHAVVVGRSKIVGAPMHDLLLW-----NN-------ATVTTCHSK------------ 72 (170)
T ss_dssp CHHHHHHHHHHHTTTCCCTT---CEEEEECCCTTTHHHHHHHHHH-----TT-------CEEEEECTT------------
T ss_pred CChHHHHHHHHHHhCccccc---ceEEEEecCCccchHHHHHHHh-----cc-------CceEEEecc------------
Confidence 45777888888999999988 9999999976 78888888765 33 257777652
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..++++.+++++++
T Consensus 73 -----------------t~~l~~~~~~--aDivi~a~G~~~~i~~~~vk 102 (170)
T d1a4ia1 73 -----------------TAHLDEEVNK--GDILVVATGQPEMVKGEWIK 102 (170)
T ss_dssp -----------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC
T ss_pred -----------------cccHHHHHhh--ccchhhcccccccccccccc
Confidence 1235566665 89999999999999998877
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.83 E-value=0.21 Score=41.53 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=55.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
+.+|+|+|||-.|..+|+.|.+ .|. +|+++|+. ..+ .......|......+........+.+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~-----~g~-------~V~v~dr~----~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~ 63 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD-----SGI-------KVTVACRT----LES--AKKLSAGVQHSTPISLDVNDDAALDA 63 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT-----TTC-------EEEEEESC----HHH--HHHHHTTCTTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEECC----hHH--HHHHHhcccccccccccccchhhhHh
Confidence 3799999999999999987764 353 69999873 221 11111122111000000011234666
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
.+.. .|+.|-+. +...+..+.....+ ..-.++-++.+.+.
T Consensus 64 ~i~~--~~~~i~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 103 (182)
T d1e5qa1 64 EVAK--HDLVISLI--PYTFHATVIKSAIR---QKKHVVTTSYVSPA 103 (182)
T ss_dssp HHTT--SSEEEECS--CGGGHHHHHHHHHH---HTCEEECSSCCCHH
T ss_pred hhhc--cceeEeec--cchhhhHHHHHHHh---hccceeecccCcHH
Confidence 6765 78887443 45555555555433 22334556665543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.73 E-value=0.26 Score=44.41 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=27.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.+|+|+|||.+|+..|..|.+. |+ ++.++|++-
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~-----G~-------~v~vlE~~~ 35 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKA-----GI-------DNVILERQT 35 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-----TC-------CEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------CEEEEeCCC
Confidence 4899999999999999998764 54 588888763
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.66 E-value=0.28 Score=42.95 Aligned_cols=33 Identities=36% Similarity=0.480 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.||+..|.+|.+ .|+ .+|.++++.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~-----~Gi------~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQ-----AGI------GKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC------CeEEEEeCC
Confidence 489999999999999998875 365 357677764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.50 E-value=0.71 Score=40.86 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
++.-+.|++..+.+..| +|+|+|||..|...+.+.... |. ++|+.+|+
T Consensus 11 ~~ta~~a~~~a~v~~G~----tVlV~GaG~vGl~a~~~ak~~-----ga------~~Vi~~d~ 58 (195)
T d1kola2 11 LPTGYHGAVTAGVGPGS----TVYVAGAGPVGLAAAASARLL-----GA------AVVIVGDL 58 (195)
T ss_dssp HHHHHHHHHHTTCCTTC----EEEEECCSHHHHHHHHHHHHT-----TC------SEEEEEES
T ss_pred HHHHHHHHHHhCCCCCC----EEEEECcCHHHHHHHHHHHhh-----cc------cceeeecc
Confidence 55566778888877766 999999998886666655432 32 58998886
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=1.1 Score=38.82 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=56.4
Q ss_pred CCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
+-+||+|+|| |-.|..+++.|++. |. ++..++++ ....+...+...++..-+ ..+..+|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~-----g~-------~V~~~~R~---~~~~~~~~~~~~~~~~gD-----~~d~~~l 61 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA-----GY-------EVTVLVRD---SSRLPSEGPRPAHVVVGD-----VLQAADV 61 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-----TC-------EEEEEESC---GGGSCSSSCCCSEEEESC-----TTSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-----cC-------EEEEEEcC---hhhccccccccccccccc-----ccchhhH
Confidence 4589999996 89999999988753 43 57777653 011111111111222211 1133568
Q ss_pred HHHhcccCCcEEEEeccCCCCC---------CHHHHHHhhhcCCCCCeEEe
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVF---------NEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~F---------teevv~~Ma~~~~erPIIFa 442 (533)
.+++++ .|++|=+.+..+.+ +..++++|.+ ++-+.+|+-
T Consensus 62 ~~al~~--~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~-~~v~r~i~~ 109 (205)
T d1hdoa_ 62 DKTVAG--QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKA-HGVDKVVAC 109 (205)
T ss_dssp HHHHTT--CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHH-HTCCEEEEE
T ss_pred HHHhcC--CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHh-cCCCeEEEE
Confidence 899988 78888655433222 3468888865 444556663
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=84.13 E-value=0.25 Score=43.66 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||.|+|||..|.|||-+++.+ |. +++++|.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~-----G~-------~V~l~D~~ 36 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK-----GT-------PILMKDIN 36 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT-----TC-------CEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999877754 54 68888874
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.80 E-value=0.13 Score=45.16 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=66.3
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
++..||.|+|||.-|..+|..|+. .|+- ..+.|+|.+-=...+. -+|.+.. .+...... ....+
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~-----~~l~-----~elvL~D~~~~~a~g~alDl~~~~-~~~~~~~~----~~~~d 81 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILL-----KGLA-----DELALVDADTDKLRGEALDLQHGS-LFLSTPKI----VFGKD 81 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHT-----TTSC-----SEEEEECSCHHHHHHHHHHHHHTT-TTCSCCEE----EEESS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCchhhhccHHHHhCcc-hhcCCCeE----Eeccc
Confidence 444899999999999999987764 4553 4799999652111111 1232211 11111100 01123
Q ss_pred HHHHhcccCCcEEEEeccCC---C-----CC--CH----HHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 400 LLEVVRKVKPHVLLGLSGVG---G-----VF--NE----EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g-----~F--te----evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
. +..++ .|++|=+.+.+ | .| +- ++++.+++ ++.+.||+-.|||.. +....+++++
T Consensus 82 ~-~~~~~--adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~-~~p~~ivivvtNPvD---v~t~~~~k~s 150 (159)
T d2ldxa1 82 Y-NVSAN--SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQ-NSPDCKIIVVTNPVD---ILTYVVWKIS 150 (159)
T ss_dssp G-GGGTT--EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHH-HSTTCEEEECSSSHH---HHHHHHHHHH
T ss_pred h-hhhcc--ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhc-cCCCeEEEEeCCcHH---HHHHHHHHHH
Confidence 3 33455 78887444332 2 12 23 34444433 789999999999984 4555565543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=83.46 E-value=0.33 Score=43.14 Aligned_cols=36 Identities=36% Similarity=0.536 Sum_probs=29.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
.+||+|+|||.||+..|..+.+ .|. ++.++|+...+
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~-----~G~-------~Vtl~E~~~~~ 78 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAA-----RGH-------QVTLFDAHSEI 78 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEEESSSSS
T ss_pred CcEEEEECccHHHHHHHHHHHh-----hcc-------ceEEEeccCcc
Confidence 4899999999999999988865 353 78899986543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.44 E-value=0.82 Score=38.90 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 307 li~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.++|++..+.+..| +++|+|+|..|...+.+... .|. +++.+|+
T Consensus 16 a~~al~~~~~~~g~----~vlI~GaG~vG~~a~q~ak~-----~G~-------~vi~~~~ 59 (168)
T d1piwa2 16 VYSPLVRNGCGPGK----KVGIVGLGGIGSMGTLISKA-----MGA-------ETYVISR 59 (168)
T ss_dssp HHHHHHHTTCSTTC----EEEEECCSHHHHHHHHHHHH-----HTC-------EEEEEES
T ss_pred HHHHHHHhCcCCCC----EEEEECCCCcchhHHHHhhh-----ccc-------ccccccc
Confidence 46888887766554 99999999888776544332 243 5787876
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.62 E-value=1.1 Score=37.72 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=55.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
+|.|+|+|-.|..+|+-|.+ .|.+ .+||.+|++ +.....|+...... ....+..+ .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~-----~g~~-----~~I~~~D~~-----------~~~~~~a~~~~~~~--~~~~~~~~-~ 58 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRR-----SGFK-----GKIYGYDIN-----------PESISKAVDLGIID--EGTTSIAK-V 58 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHH-----TTCC-----SEEEEECSC-----------HHHHHHHHHTTSCS--EEESCGGG-G
T ss_pred EEEEEccCHHHHHHHHHHHh-----cCCC-----eEEEEEECC-----------hHHHHHHHHhhcch--hhhhhhhh-h
Confidence 79999999999999998865 4554 479988873 22222232211100 00112222 2
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
...++|++| +++ |-.-+.++++......++..||.-.+.-.
T Consensus 59 ~~~~~dlIi-la~-p~~~~~~vl~~l~~~~~~~~ii~d~~s~k 99 (171)
T d2g5ca2 59 EDFSPDFVM-LSS-PVRTFREIAKKLSYILSEDATVTDQGSVK 99 (171)
T ss_dssp GGTCCSEEE-ECS-CHHHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred hcccccccc-ccC-Cchhhhhhhhhhhcccccccccccccccc
Confidence 223477776 554 33335667777655566777887777643
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.27 E-value=0.54 Score=39.91 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=55.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|+|..|.++++-|... | .++++.|+. . +.....++.+. . ....+..|++
T Consensus 2 kIg~IG~G~mG~al~~~l~~~-----~-------~~i~v~~r~----~--~~~~~l~~~~g---~-----~~~~~~~~~~ 55 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQT-----P-------HELIISGSS----L--ERSKEIAEQLA---L-----PYAMSHQDLI 55 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTS-----S-------CEEEEECSS----H--HHHHHHHHHHT---C-----CBCSSHHHHH
T ss_pred EEEEEeccHHHHHHHHHHHhC-----C-------CeEEEEcCh----H--HhHHhhccccc---e-----eeechhhhhh
Confidence 799999999999998877532 2 478877652 1 11222222221 1 1235789999
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++ .|++| ++..|. .-+++++.+ .+..+|..++...+
T Consensus 56 ~~--~dvIi-lavkp~-~~~~vl~~l----~~~~~iis~~agi~ 91 (152)
T d2ahra2 56 DQ--VDLVI-LGIKPQ-LFETVLKPL----HFKQPIISMAAGIS 91 (152)
T ss_dssp HT--CSEEE-ECSCGG-GHHHHHTTS----CCCSCEEECCTTCC
T ss_pred hc--cceee-eecchH-hHHHHhhhc----ccceeEeccccccc
Confidence 87 88877 554443 335666554 46777778877654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.74 E-value=0.28 Score=45.78 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.2
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~ 344 (533)
.|||+|||.||+.+|..|.+
T Consensus 3 dv~IIGaG~sGl~~A~~L~~ 22 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKK 22 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGG
T ss_pred cEEEECCcHHHHHHHHHHHh
Confidence 58999999999999999865
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.73 E-value=0.48 Score=41.08 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=29.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|..|.++.... .+.--++.++|+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~-----~~~~~~V~v~E~~ 41 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTT-----EDLDMAVDMLEML 41 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHS-----TTCCEEEEEEESS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCcc-----ccCCCceEEEecC
Confidence 69999999999999999999876410 0111257888886
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=80.96 E-value=0.41 Score=42.57 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=26.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.|+|+|||.+|+.+|..|.+. |. ++.++|+..
T Consensus 6 DvvIIGaGi~Gls~A~~La~~-----G~-------~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKE-----NK-------NTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-----CC-------cEEEEeCCC
Confidence 599999999999999988763 53 799999863
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=80.92 E-value=1 Score=38.38 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
...-+.|++..+..++. ..+|+|+|+|..|...+.++... |. ++++.+|+
T Consensus 16 ~~Ta~~al~~~~~~~~~--g~~vli~GaG~vG~~~~~~a~~~-----g~------~~vv~~~~ 65 (172)
T d1h2ba2 16 GITAYRAVKKAARTLYP--GAYVAIVGVGGLGHIAVQLLKVM-----TP------ATVIALDV 65 (172)
T ss_dssp HHHHHHHHHHHHTTCCT--TCEEEEECCSHHHHHHHHHHHHH-----CC------CEEEEEES
T ss_pred HHHHHHHHHHhhhccCC--CCEEEEeCCChHHHHHHHHHHhh-----cC------cccccccc
Confidence 33456777776654421 26899999999998887777543 32 57888877
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=80.84 E-value=0.38 Score=40.96 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=59.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||.-|..+|-+|.. .++. .+.++|.+-=...+ ..++.+.. .+....... ....+.++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~-----~~l~------dl~l~D~~~~~~~~~~~Dl~~~~-~~~~~~~~i---~~~~d~~~ 66 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAA-----KELG------DIVLLDIVEGVPQGKALDLYEAS-PIEGFDVRV---TGTNNYAD 66 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----HTCS------EEEEECSSSSHHHHHHHHHHTTH-HHHTCCCCE---EEESCGGG
T ss_pred CeEEEECCCHHHHHHHHHHHh-----CCcc------eEEEEeeccccchhHHHHhhccc-cccCCCCEE---EecCcHHH
Confidence 599999999999999988754 3553 58899863111111 01121111 111111001 01233343
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++ .|++|=+.+.+ |- .-+++++.+++ +++.-|+.--|||..
T Consensus 67 -~~~--advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k-~~p~aivivvtNPvD 122 (142)
T d1uxja1 67 -TAN--SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAP-LSPNAVIIMVNNPLD 122 (142)
T ss_dssp -GTT--CSEEEECCSCC---------CHHHHHHHHHHHHHHHGG-GCTTCEEEECSSSHH
T ss_pred -hcC--CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhc-cCCCceEEEeCCchH
Confidence 555 78877554433 21 11466777754 899999999999985
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=80.60 E-value=1.5 Score=36.39 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=54.1
Q ss_pred ceEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCC----C
Q 009519 324 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREG----A 398 (533)
Q Consensus 324 ~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~----~ 398 (533)
.||.|+| .|..|..+|+.|.+ .|. .++++|++ . .......+............ .
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~-----~G~-------~V~~~d~~-------~--~~~~~~~~~~~~~v~~~~~~~~~~~ 68 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRA-----SGY-------PISILDRE-------D--WAVAESILANADVVIVSVPINLTLE 68 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHT-----TTC-------CEEEECTT-------C--GGGHHHHHTTCSEEEECSCGGGHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHH-----cCC-------CcEecccc-------c--ccccchhhhhccccccccchhhhee
Confidence 6999999 89999999999865 454 57777763 1 01111111110000000011 1
Q ss_pred CHHHHhcccCC-cEEEEeccCCCCCCHHHHHHhhhcCCCCCeE-EecCCCCC
Q 009519 399 SLLEVVRKVKP-HVLLGLSGVGGVFNEEVLKAMRESDSVKPAI-FAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkp-tvLIG~S~~~g~Fteevv~~Ma~~~~erPII-FaLSNPt~ 448 (533)
-+.+.....++ .++|=+|+ .++++++.|.+....+=|- =||+-|..
T Consensus 69 v~~~~~~~~~~~~iiiD~~S----vk~~~~~~~~~~~~~~~v~~hP~~Gp~~ 116 (152)
T d2pv7a2 69 TIERLKPYLTENMLLADLTS----VKREPLAKMLEVHTGAVLGLHPMFGADI 116 (152)
T ss_dssp HHHHHGGGCCTTSEEEECCS----CCHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred eeecccccccCCceEEEecc----cCHHHHHHHHHHccCCEEEecccCCCcc
Confidence 23444444444 35666665 5788888886644444222 36777764
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.55 E-value=0.44 Score=42.42 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=24.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
|+|+|||-||+..|..|.+ .|. ++.+++++
T Consensus 2 ViVIGaG~aGL~aA~~L~~-----~G~-------~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHD-----SGL-------NVVVLEAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHH-----TTC-------CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 7999999999999998865 353 57777764
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.50 E-value=0.92 Score=40.06 Aligned_cols=37 Identities=11% Similarity=0.328 Sum_probs=28.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
++|||+|||.||+-.|..|.+. |.+ .+|.++++..-+
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~-----~~~-----~~I~li~~e~~~ 41 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRAR-----DPG-----ARVLIVSEDPEL 41 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHH-----STT-----CEEEEEESSSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhc-----CCC-----CcEEEEeCCCCC
Confidence 7899999999999999888653 432 479899875444
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=1.3 Score=38.45 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=18.9
Q ss_pred ceEEEeCc-hhHHHHHHHHHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQ 344 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~ 344 (533)
.||+++|| |-.|-.|++++.+
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~ 26 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALA 26 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 89999997 9999999888876
|