Citrus Sinensis ID: 009523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
Protein Sequence
MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEEccccccccHHcHHHHHHHHHHcccEEEEccccccHHccccccccccEEEEcccccccccccccccEEEccHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHcccccEEEEEEcccHHHHHHHHHHccccEEcccccccccccccccccccccccHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccHHHHHccccccEEEcccccccccccccccccccccccccEEEEEcccccccccccccEEccEEEEEEEEEccHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHccccccEEEEEEccHHHHHHHHHHcccccEEcccccccccEEEcccccccccccHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavsscssqkilsfssscssfecrsdpdfsgsarfdkprisaARVIGastasfsgvsslifrfppnfvrqLSTKARRNCSNIGVAQIVAASwsnsvgsgsnsaAATAASAITSGDDIALVDGLKNVQLEALADLKNeasflssdgslaihagerlgrgivtdaittpvvntsayfFKKTAELIDFKEKRRasfeygrygnpTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVpagghivtttdcyrKTRIFIETVlpkmgitatvidpadmEGLEAALnnnnvslfftesptnpflrcvDVKLVSDLchkkgaivcidgtfatplnQKALSLGADLVLHSAtkfigghndvlagsisgsgkLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEahpkvkrvhypglkshpehhiatqqmtgfggvvsfevdgdLTATIKFIdalkipyiapsfggcesivdqpaimsywdlsqseRLKYGIMDnlvrfsfgvedfEDLKADVLQALHAI
Flexible Loop (DISEMBL)
mavsscssqkilsfssscssfecrSDPDfsgsarfdkPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGrgivtdaittpvvntsayffkktaelidfkekrrasfeygrygnpttvVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFietvlpkmgITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Low Complexity Region (SEG)
MAVsscssqkilsfssscssfecrsDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIvaaswsnsvgsgsnsaaataasaitsGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Disordered region (IsUnstruct)
*****************************************AARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN***************AITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQ*****
Disordered Region (DISOPRED)
**************SSSCSSFEC********************************VSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAA*******************************************************SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Disordered Region (DISEMBL)
****************************FSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWS***************SAITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Disordered Region (DISPRO)
******************************************************GVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN**********************************************LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	532	2.2.26 [Sep-21-2011]
P55217	563	Cystathionine gamma-synth	yes	no	0.751	0.710	0.840	0.0
A2RM21	380	Cystathionine beta-lyase	yes	no	0.678	0.95	0.395	2e-71
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.678	0.95	0.395	2e-71
O05394	379	Cystathionine gamma-lyase	yes	no	0.695	0.976	0.372	8e-71
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.691	0.968	0.392	2e-70
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.703	0.966	0.354	1e-69
P13254	398	Methionine gamma-lyase OS	no	no	0.691	0.924	0.388	6e-69
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.697	0.976	0.374	1e-68
Q83A83	387	Cystathionine beta-lyase	yes	no	0.693	0.953	0.367	2e-68
P56069	380	Cystathionine gamma-synth	yes	no	0.697	0.976	0.371	2e-68

>sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/402 (84%), Positives = 369/402 (91%), Gaps = 2/402 (0%)

Query: 131 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR 190
           L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR 
Sbjct: 164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRS 221

Query: 191 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 250
            SFEYGRYGNPTTVV+E+K+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCY
Sbjct: 222 VSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCY 281

Query: 251 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 310
           RKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS
Sbjct: 282 RKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVS 341

Query: 311 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 370
            +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++
Sbjct: 342 KICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSE 401

Query: 371 IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 430
           IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL 
Sbjct: 402 IRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLP 461

Query: 431 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 490
           SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMS
Sbjct: 462 SHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMS 521

Query: 491 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           YWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD+LQAL AI
Sbjct: 522 YWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 230/377 (61%), Gaps = 16/377 (4%)

Query: 158 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 213
           GI TD    A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE ++ L
Sbjct: 12  GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63

Query: 214 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 273
           EG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D 
Sbjct: 64  EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122

Query: 274 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 333
           ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181

Query: 334 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIR 392
            ++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241

Query: 393 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 452
           G+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFE 301

Query: 453 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 512
           +  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S
Sbjct: 302 LT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLS 360

Query: 513 FGVEDFEDLKADVLQAL 529
            GVE  EDL  D+ +AL
Sbjct: 361 VGVEAIEDLLTDIKEAL 377

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 230/377 (61%), Gaps = 16/377 (4%)

Query: 158 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 213
           GI TD    A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE ++ L
Sbjct: 12  GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63

Query: 214 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 273
           EG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D 
Sbjct: 64  EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122

Query: 274 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 333
           ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181

Query: 334 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIR 392
            ++LGAD+VLHSATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241

Query: 393 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 452
           G+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFE 301

Query: 453 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 512
           +  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S
Sbjct: 302 LT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLS 360

Query: 513 FGVEDFEDLKADVLQAL 529
            GVE  EDL  D+ +AL
Sbjct: 361 VGVEAIEDLLTDIKEAL 377

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  268 bits (685), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 229/392 (58%), Gaps = 22/392 (5%)

Query: 146 SLAIHAG----ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 201
           +L IH G    E+ G      A++ P+   S Y   K  +           +EY R  NP
Sbjct: 5   TLMIHGGITGDEKTG------AVSVPIYQVSTYKQPKAGQ--------HTGYEYSRTANP 50

Query: 202 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 261
           T   +E  ++ LE  E+    +SGM+A T +++ L  +G H+V T D Y  T   +  VL
Sbjct: 51  TRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVL 109

Query: 262 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 321
            ++GI +T +D +  E +E A+  N  +++  E+PTNP L+  D+ L++D+  K G ++ 
Sbjct: 110 NRLGIESTFVDTSSREEVEKAIRPNTKAIYI-ETPTNPLLKITDLTLMADIAKKAGVLLI 168

Query: 322 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGG 380
           +D TF TP  Q+ L+LGAD+VLHSATK++GGH+DV+ G  ++ S +L  ++  + +  GG
Sbjct: 169 VDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGG 228

Query: 381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 440
            L P  ++L++RG+KTL LR++  +  A ++A  LE HP V+ ++YPG  +HP H +A  
Sbjct: 229 VLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKT 288

Query: 441 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 500
           Q  GFGG++SF++ G       F+  LK+  IA S G  ES++  PA M++  + +  RL
Sbjct: 289 QGAGFGGMISFDI-GSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTHASIPRERRL 347

Query: 501 KYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           + GI D L+R S G+ED EDL  D+ QAL  I
Sbjct: 348 ELGITDGLIRISVGIEDAEDLLEDIGQALENI 379

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/382 (39%), Positives = 230/382 (60%), Gaps = 14/382 (3%)

Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           IH G    R   T A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE
Sbjct: 9   IHGGISTDR--TTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEE 58

Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
            ++ LEG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI  
Sbjct: 59  LIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIY 117

Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
            ++D +++E L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFAT
Sbjct: 118 DLVDLSNLEDLKAAFKAETKAVYF-ETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFAT 176

Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 387
           P  Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L  +I  L + +G  L P  +
Sbjct: 177 PYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDS 236

Query: 388 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 447
           +L+ RG+KTL  R++  ++ A ++A+ LEA   V +V+YPGL +H  H IA +QMT FGG
Sbjct: 237 WLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGG 296

Query: 448 VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 507
           ++SFE+  D  A   F++ L+   +A S GG ES+++ PA+M++  + +  R + GI D 
Sbjct: 297 MISFELT-DENAVKNFVENLRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDG 355

Query: 508 LVRFSFGVEDFEDLKADVLQAL 529
           L+R S GVE  EDL  D+ +AL
Sbjct: 356 LIRLSVGVEALEDLLTDLKEAL 377

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 225/386 (58%), Gaps = 12/386 (3%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
           G+  IHAG+   +   T A+  P+ + S  F + +  ++       + ++Y R GNPT  
Sbjct: 10  GTNVIHAGQSADKN--TGAVIVPI-SLSTTFLQPSPGVL------HSEYDYSRSGNPTRK 60

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
             EE ++A E A+  +  ASG+ A+   +  L+ +G  +++  D Y  TR +   V    
Sbjct: 61  AFEECIAACENAKYALSFASGL-ATLTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANF 119

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
            +  + +D + ++ L+ A  +    L + E+PTNP L+  D+K V+D  H +GA + +D 
Sbjct: 120 DLKFSFVDLSTLDDLKNAFTDK-TRLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDN 178

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALN 383
           TF +P  Q  L LGAD+V+HS TK+I GH+D + G + + + +L  +++ L + +G   +
Sbjct: 179 TFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPS 238

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
           P   +L +RG+KTLH+R++     A  +   LE HPKV+RV YPGL SHP+H I  +QM 
Sbjct: 239 PFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMK 298

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
           G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K G
Sbjct: 299 GYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLG 358

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQAL 529
           I D L+R S G+ED  DL AD+ QAL
Sbjct: 359 ISDTLIRLSVGIEDINDLLADISQAL 384

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P13254|MEGL_PSEPU Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2

 Score =  262 bits (669), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 3/371 (0%)

Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86

Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146

Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205

Query: 343 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           +HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265

Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A 
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325

Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
            +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385

Query: 521 LKADVLQALHA 531
           L ADV QAL A
Sbjct: 386 LLADVQQALKA 396

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 221/385 (57%), Gaps = 14/385 (3%)

Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           IH G  +     T A++ P+  TS Y                  +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------HHKGYEYSRSGNPTRFALEE 57

Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
            ++ LEG       ASG+ A    + +L+ +G H++   D Y  T      VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSC 116

Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 387
           P  Q  L LGAD+V+HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 388 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 447
           +L+ RG+KTL LR+Q     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMQAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295

Query: 448 VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 507
           ++SF +  D  AT  F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D 
Sbjct: 296 MLSFTLKNDSEAT-PFVESLKLFILGESLGGVESLVGVPAFMTHACIPKTQREAAGIRDG 354

Query: 508 LVRFSFGVEDFEDLKADVLQALHAI 532
           LVR S G+E  +DL  D+ QA   I
Sbjct: 355 LVRLSVGIEHEQDLLEDLEQAFAKI 379

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q83A83|METC_COXBU Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1

 Score =  260 bits (664), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 222/384 (57%), Gaps = 15/384 (3%)

Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           IHAG++     +T A+ TP+   S Y  K               +EY R  NPT    E 
Sbjct: 16  IHAGQK--PDPLTGAVMTPIYTASTYAQKSPG--------VHQGYEYSRSQNPTRFAYER 65

Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-MGIT 267
            ++ LE  +     ASGM+A+  +L  L P G H+V   D Y  +    E V  +  G++
Sbjct: 66  CVADLESGQHGFAFASGMAATATILELLQP-GDHVVVMDDVYGGSYRLFENVRKRSAGLS 124

Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
            + +D  D   +  A+      + + ESP+NP L+ VD+  ++++  +K  I   D TFA
Sbjct: 125 FSFVDFTDENKVREAVTAKT-KMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFA 183

Query: 328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGK-LVTQIRNLHHVLGGALNPN 385
           TP+ Q+ L LG D+V HSATK++ GH+D++ G ++ G  K L  Q++ L + +G    P 
Sbjct: 184 TPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAIGAIAAPF 243

Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
            +++++RG+KTL +R+++    A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  F
Sbjct: 244 DSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYF 303

Query: 446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
           GG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI 
Sbjct: 304 GGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGIT 363

Query: 506 DNLVRFSFGVEDFEDLKADVLQAL 529
           D  +R S G+E   DL+ D+  AL
Sbjct: 364 DGFIRLSVGIEAITDLRHDLEAAL 387

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  260 bits (664), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 221/385 (57%), Gaps = 14/385 (3%)

Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           IH G  +     T A++ P+  TS Y              R   +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------RHKGYEYSRSGNPTRFALEE 57

Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
            ++ LEG       ASG+ A    + +L+ +G H++   D Y  T      VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSC 116

Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDISQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 387
           P  Q  L LGAD+V HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 388 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 447
           +L+ RG+KTL LR++     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295

Query: 448 VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 507
           ++SF +  D  A + F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D 
Sbjct: 296 MLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDG 354

Query: 508 LVRFSFGVEDFEDLKADVLQALHAI 532
           LVR S G+E  +DL  D+ QA   I
Sbjct: 355 LVRLSVGIEHEQDLLEDLEQAFAKI 379

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	532
350536179	540	cystathionine gamma synthase [Solanum ly	0.975	0.961	0.757	0.0
8439541	539	cystathionine gamma-synthase isoform 1 [	0.973	0.961	0.756	0.0
5804835	545	cystathionine gamma synthase [Fragaria v	0.990	0.966	0.747	0.0
8439543	540	cystathionine gamma-synthase isoform 2 [	0.962	0.948	0.749	0.0
296082945	497	unnamed protein product [Vitis vinifera]	0.921	0.985	0.751	0.0
224141019	532	predicted protein [Populus trichocarpa]	0.984	0.984	0.765	0.0
225452877	531	PREDICTED: cystathionine gamma-synthase,	0.981	0.983	0.761	0.0
297828634	564	hypothetical protein ARALYDRAFT_477417 [	0.996	0.939	0.712	0.0
3202028	548	cystathionine gamma-synthase [Mesembryan	0.973	0.945	0.724	0.0
430736214	534	cystathionine gamma-synthase [Cicer arie	0.956	0.953	0.731	0.0

>gi|350536179|ref|NP_001234489.1| cystathionine gamma synthase [Solanum lycopersicum] gi|40806079|gb|AAR92031.1| cystathionine gamma synthase [Solanum lycopersicum]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/537 (75%), Positives = 461/537 (85%), Gaps = 18/537 (3%)

Query: 13  SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
           S++ +  SFECRS+PDFSGS    K   R S     G++ +   G+SSLI+RFPPNFVRQ
Sbjct: 5   SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIYRFPPNFVRQ 64

Query: 71  LSTKARRNCSNIGVAQIVAASWSNSVGS----------GSNSAAATAASAITSGDD-IAL 119
           LS KARRNCSNIGVAQ+VAASWSN+              S+++AA  +  IT+GD+ +A+
Sbjct: 65  LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITTGDEEVAV 124

Query: 120 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 175
           V+      +NVQ++    +K  ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCSDQNVQIKGSTGVK-YASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 183

Query: 176 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 235
           F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 184 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 243

Query: 236 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 295
           LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM  LE ALN   V LFFTES
Sbjct: 244 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELALNQKKVDLFFTES 303

Query: 296 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 355
           PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 304 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 363

Query: 356 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 415
           VLAG ISG  KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+IL
Sbjct: 364 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 423

Query: 416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 475
           EAHPKVK V+YPGL SHPE+H+A +QMTGFGGVVSFEVDGDL  T KF+DAL+IPYIAPS
Sbjct: 424 EAHPKVKHVYYPGLPSHPEYHLAKKQMTGFGGVVSFEVDGDLLTTAKFVDALRIPYIAPS 483

Query: 476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           FGGCESIVDQPAIMSYWDLSQS+R KYGI+DNLVRFSFGVEDFED+KADVLQAL +I
Sbjct: 484 FGGCESIVDQPAIMSYWDLSQSDRAKYGILDNLVRFSFGVEDFEDVKADVLQALDSI 540

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439541|gb|AAF74981.1|AF082891_1 cystathionine gamma-synthase isoform 1 [Solanum tuberosum]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/537 (75%), Positives = 457/537 (85%), Gaps = 19/537 (3%)

Query: 13  SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
           S++ +  SFECRS+PDFSGS    K   R S     G++ +   G+SSLIFRFPPNFVRQ
Sbjct: 5   SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIFRFPPNFVRQ 64

Query: 71  LSTKARRNCSNIGVAQIVAASWSNSVGS----------GSNSAAATAASAITSGDD-IAL 119
           LS KARRNCSNIGVAQ+VAASWSN+              S+++AA  +  IT+GD+ +A+
Sbjct: 65  LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITAGDEEVAV 124

Query: 120 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 175
           V+      +NVQ+         ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCNDQNVQITGTG--VKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 182

Query: 176 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 235
           F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 183 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 242

Query: 236 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 295
           LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM  LE  LN   V LFFTES
Sbjct: 243 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELTLNQKKVDLFFTES 302

Query: 296 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 355
           PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 303 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 362

Query: 356 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 415
           VLAG ISG  KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+IL
Sbjct: 363 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 422

Query: 416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 475
           EAHPKVK V+YPGL SHPE+H+A +QMTGFGGVVSFEVDGDL  T KF+DAL+IPYIAPS
Sbjct: 423 EAHPKVKHVYYPGLPSHPEYHLAKKQMTGFGGVVSFEVDGDLLTTAKFVDALRIPYIAPS 482

Query: 476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           FGGCESIVDQPAIMSYWDLSQS+R KYGI+DNLVRFSFGVEDFED+KADVLQAL +I
Sbjct: 483 FGGCESIVDQPAIMSYWDLSQSDRAKYGILDNLVRFSFGVEDFEDVKADVLQALDSI 539

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5804835|emb|CAA04772.2| cystathionine gamma synthase [Fragaria vesca] gi|6012969|emb|CAB57356.1| cystathionine gamma synthase [Fragaria vesca]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/550 (74%), Positives = 460/550 (83%), Gaps = 23/550 (4%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFD-KPRISAARVIGASTASFSGVSSL 59
           M V +C   ++ + SSS S++ CR  PD +  A  + +P  +A RV   S A F G+SSL
Sbjct: 1   MGVYTCP--RVFTSSSSSSTYCCRHHPDLATRAAVNPRPGFAAGRV--DSPAPFHGLSSL 56

Query: 60  IFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA----------- 108
           I RFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN     S   AA+A            
Sbjct: 57  ILRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNKDSDLSAVPAASAVDAAATAADLVV 116

Query: 109 -SAITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 162
            + I + DD+A VD         VQL  L DLK +ASFLSSDGS+AIHAGERLGRGIVTD
Sbjct: 117 PAQIGTEDDLAAVDAEYAVFGNGVQLGGLPDLK-DASFLSSDGSIAIHAGERLGRGIVTD 175

Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           AITTPVVNTSAYFFKKTA+L+DFKEKR  SFEYGRYGNPTTVV+EEK+SALEGAEST+++
Sbjct: 176 AITTPVVNTSAYFFKKTADLLDFKEKRATSFEYGRYGNPTTVVLEEKISALEGAESTLLL 235

Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           ASGM ASTV+L+ALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITAT+IDPAD+  LE A
Sbjct: 236 ASGMCASTVLLMALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATIIDPADVGALETA 295

Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           LN N VSLFFTESPTNPFLRCVD+ LVSDLCH KGA+VCI+GTFATP+NQKAL+LGADLV
Sbjct: 296 LNENKVSLFFTESPTNPFLRCVDINLVSDLCHSKGAVVCINGTFATPINQKALALGADLV 355

Query: 343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 402
           +HSATK++ GHNDVLAG ISGS KLV++IR LHH+LGGALNPNAAYLIIRGMKTLH+R+Q
Sbjct: 356 VHSATKYLAGHNDVLAGCISGSMKLVSEIRILHHILGGALNPNAAYLIIRGMKTLHIRIQ 415

Query: 403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK 462
           QQNSTALRMAKILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGDL  TIK
Sbjct: 416 QQNSTALRMAKILEAHPKVAHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDLKRTIK 475

Query: 463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLK 522
           FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS+RLKYGI DNLVRFSFG+EDF DLK
Sbjct: 476 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRLKYGIKDNLVRFSFGIEDFNDLK 535

Query: 523 ADVLQALHAI 532
           AD+LQAL  I
Sbjct: 536 ADILQALEKI 545

Source: Fragaria vesca

Species: Fragaria vesca

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439543|gb|AAF74982.1|AF082892_1 cystathionine gamma-synthase isoform 2 [Solanum tuberosum]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/530 (74%), Positives = 451/530 (85%), Gaps = 18/530 (3%)

Query: 20  SFECRSDPDFSGSA-RFDKP----RISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTK 74
           SF+CRSDPDFSG   R D P    R S      +  +S  G+SSLI RFPPNFVRQLS K
Sbjct: 12  SFQCRSDPDFSGGVPRHDLPNAGVRFSVKVKSLSRGSSVHGMSSLILRFPPNFVRQLSVK 71

Query: 75  ARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASA-------ITSGDDIALV-----DG 122
           ARRNCSNIG+AQ+VAASWSN+  S   + AA A  A       IT+GD+   V       
Sbjct: 72  ARRNCSNIGLAQVVAASWSNNHASPDFTPAAKAVDAASIAPFDITTGDEEGAVVEDSPRA 131

Query: 123 LKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAEL 182
            +NVQ+E L D+K  +SFLSSDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFFKKT++L
Sbjct: 132 DRNVQIEDLTDVKY-SSFLSSDGSIAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTSDL 190

Query: 183 IDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH 242
           IDFKEK+RASFEYGRYGNPT++V EEK+SALEGA++T++MASGM ASTV+LLALVPAGGH
Sbjct: 191 IDFKEKKRASFEYGRYGNPTSIVAEEKISALEGADATLLMASGMCASTVLLLALVPAGGH 250

Query: 243 IVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 302
           IVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+  LE+ LN   V+LFFTESPTNPFLR
Sbjct: 251 IVTTTDCYRKTRIFIETILPKMGITATVIDPADIGALESVLNQKKVTLFFTESPTNPFLR 310

Query: 303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS 362
           CVD++LVS LCH+KGA+VCIDGTFATPLNQK L+LGADLV+HSATK++GGHNDVL G IS
Sbjct: 311 CVDIELVSKLCHEKGALVCIDGTFATPLNQKVLALGADLVVHSATKYLGGHNDVLGGCIS 370

Query: 363 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK 422
           G  KLV+ +R LHH+LGGA+NPNAAYLIIRGMKTLHLRVQQQNSTA R+A+ILEAHPKV+
Sbjct: 371 GPDKLVSAVRTLHHILGGAINPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPKVR 430

Query: 423 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI 482
            V+YPGL SHPE+H+A +QMTGFGGVVSFEVDGDL  T KF+DALKIPYIAPSFGGCESI
Sbjct: 431 CVYYPGLPSHPEYHLAKRQMTGFGGVVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESI 490

Query: 483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           VDQPAIMSYWDL +SER KYGIMDNLVRFSFGVEDFEDLKAD+LQAL ++
Sbjct: 491 VDQPAIMSYWDLKESERAKYGIMDNLVRFSFGVEDFEDLKADILQALESM 540

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082945|emb|CBI22246.3| unnamed protein product [Vitis vinifera]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/539 (75%), Positives = 440/539 (81%), Gaps = 49/539 (9%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
           MAVSSC            ++FECRS+PDF G     +   S  R  G +++         
Sbjct: 1   MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52

Query: 54  SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITS 113
           S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAAS                      
Sbjct: 53  SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASC--------------------- 91

Query: 114 GDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSA 173
                      +VQ E LAD K  ASFL  DG+L IHAGERLGRGIVTDAITTPVVNTSA
Sbjct: 92  -----------DVQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTDAITTPVVNTSA 138

Query: 174 YFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVML 233
           YFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIMASGM ASTVML
Sbjct: 139 YFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIMASGMCASTVML 198

Query: 234 LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 293
           LALVP GGH+VTTTDCYR+TRIFIET LPK+G+  TVIDPAD E L++AL+ NNV+LFFT
Sbjct: 199 LALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSALDKNNVTLFFT 258

Query: 294 ESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGH 353
           ESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLVLHSATK+I GH
Sbjct: 259 ESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLVLHSATKYIAGH 318

Query: 354 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK 413
           NDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK
Sbjct: 319 NDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK 378

Query: 414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA 473
           ILEAHPKVK V+YPGL SHPEHHIA +QMTGFGGVVSFEVDGDLT TIKF+DALKIPYIA
Sbjct: 379 ILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEVDGDLTTTIKFVDALKIPYIA 438

Query: 474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           PSFGGCESIVDQPAIMSYWDL+QSER KYGI DNLVRFSFGVEDFEDLKAD+LQAL +I
Sbjct: 439 PSFGGCESIVDQPAIMSYWDLNQSERAKYGIQDNLVRFSFGVEDFEDLKADILQALESI 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141019|ref|XP_002323872.1| predicted protein [Populus trichocarpa] gi|222866874|gb|EEF04005.1| predicted protein [Populus trichocarpa]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/537 (76%), Positives = 456/537 (84%), Gaps = 13/537 (2%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKP---RISAARVIGASTASFSGVS 57
           MAVSSC   K+       SSFECRSD     S+  D+P   R ++AR       S +G+S
Sbjct: 1   MAVSSCPCPKLFV----ASSFECRSD----SSSSADQPSQGRSNSARHGTTPFLSGAGMS 52

Query: 58  SLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITSGDDI 117
           SLI +FPPNFVRQLSTKARRNCSNIGVAQIVAASWSN+  +G+ SAAA AA+A  +    
Sbjct: 53  SLILKFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNNSAAGAPSAAAAAAAAAAASAIP 112

Query: 118 ALV--DGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 175
           A      L   +LE L+      SFLSSDGS+A+HAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 113 AAEPAKTLAGNELEDLSSDLEYKSFLSSDGSIAVHAGERLGRGIVTDAITTPVVNTSAYF 172

Query: 176 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 235
           FKKT ELIDFKEKR AS+EYGRYGNPTT V+E+K+S LEGAEST+I+ASGM ASTV+LLA
Sbjct: 173 FKKTQELIDFKEKRHASYEYGRYGNPTTQVLEDKISELEGAESTLILASGMCASTVLLLA 232

Query: 236 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 295
           LVPAGGH+VTTTDCYRKTRIF+ET LPKMGIT TVIDPAD++ LE+AL  N VSLFFTES
Sbjct: 233 LVPAGGHLVTTTDCYRKTRIFMETFLPKMGITVTVIDPADVKALESALEINKVSLFFTES 292

Query: 296 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 355
           PTNPFLRCVD++LVS+LCH+KGA+VCIDGTFATPLNQKAL+LGADL+LHSATKFIGGHND
Sbjct: 293 PTNPFLRCVDIELVSELCHRKGALVCIDGTFATPLNQKALALGADLILHSATKFIGGHND 352

Query: 356 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 415
           VL G ISGS K+V++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL
Sbjct: 353 VLGGCISGSTKVVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 412

Query: 416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 475
           EAHPKV+ V+YPGL SHPEHHIA +QMTGFGGVVSFEVDGDL  T KF+DALKIPYIAPS
Sbjct: 413 EAHPKVRCVYYPGLPSHPEHHIAKKQMTGFGGVVSFEVDGDLFITSKFVDALKIPYIAPS 472

Query: 476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           FGGCESIVDQPAIMSYWDLS+SER KYGI DNLVRFSFGVEDFEDLKAD+LQAL  I
Sbjct: 473 FGGCESIVDQPAIMSYWDLSRSEREKYGIKDNLVRFSFGVEDFEDLKADILQALETI 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452877|ref|XP_002283866.1| PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Vitis vinifera]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/541 (76%), Positives = 453/541 (83%), Gaps = 19/541 (3%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
           MAVSSC            ++FECRS+PDF G     +   S  R  G +++         
Sbjct: 1   MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52

Query: 54  SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITS 113
           S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAASWS    + + ++A+ AA+A   
Sbjct: 53  SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASWSADSAAAAAASASAAAAASVE 112

Query: 114 GDDIALVDGL--KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNT 171
                 V      +VQ E LAD K  ASFL  DG+L IHAGERLGRGIVTDAITTPVVNT
Sbjct: 113 ASVEVSVVESSGSDVQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTDAITTPVVNT 170

Query: 172 SAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTV 231
           SAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIMASGM ASTV
Sbjct: 171 SAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIMASGMCASTV 230

Query: 232 MLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLF 291
           MLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+  TVIDPAD E L++AL+ NNV+LF
Sbjct: 231 MLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSALDKNNVTLF 290

Query: 292 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG 351
           FTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLVLHSATK+I 
Sbjct: 291 FTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLVLHSATKYIA 350

Query: 352 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 411
           GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTALRM
Sbjct: 351 GHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQQQNSTALRM 410

Query: 412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 471
           AKILEAHPKVK V+YPGL SHPEHHIA +QMTGFGGVVSFEVDGDLT TIKF+DALKIPY
Sbjct: 411 AKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEVDGDLTTTIKFVDALKIPY 470

Query: 472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 531
           IAPSFGGCESIVDQPAIMSYWDL+QSER KYGI DNLVRFSFGVEDFEDLKAD+LQAL +
Sbjct: 471 IAPSFGGCESIVDQPAIMSYWDLNQSERAKYGIQDNLVRFSFGVEDFEDLKADILQALES 530

Query: 532 I 532
           I
Sbjct: 531 I 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828634|ref|XP_002882199.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata] gi|297328039|gb|EFH58458.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/566 (71%), Positives = 453/566 (80%), Gaps = 36/566 (6%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGS--ARFDKPRISAARVIGASTASFSGVSS 58
           MAVSS     I S SS  S F+CRSDPD  GS      + R++A   I +S     G+SS
Sbjct: 1   MAVSSFQCPTIFSSSSI-SGFQCRSDPDLVGSPVGGSSRRRVNATAGISSSFTGDGGLSS 59

Query: 59  LIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSG------------------- 99
            I RFPPNFVRQLS KARRNCSNIGVAQIVAA WSN+  SG                   
Sbjct: 60  RILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSGLPSAAAAAAASSASAVSSA 119

Query: 100 -----------SNSAAATAASAITSGDDIALV--DGLKNVQLEALADLKNEASFLSSDGS 146
                      +  AAA     + S D+  +V  +G++  ++ ++    ++ SFLSSDGS
Sbjct: 120 ASAATASSAAAAPEAAAPPVVVLKSVDEEVVVAKEGIRE-KIGSVQLTDSKHSFLSSDGS 178

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
           L +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+
Sbjct: 179 LTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVL 238

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LPK+GI
Sbjct: 239 EEKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGI 298

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
           T TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS++CHK+G +VCIDGTF
Sbjct: 299 TVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSEICHKRGTLVCIDGTF 358

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA 386
           ATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNA
Sbjct: 359 ATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNA 418

Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           AYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL SHPEH +A +QMTGFG
Sbjct: 419 AYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLASHPEHELAKRQMTGFG 478

Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           GVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI D
Sbjct: 479 GVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKD 538

Query: 507 NLVRFSFGVEDFEDLKADVLQALHAI 532
           NLVRFSFGVEDFED+KAD+LQAL AI
Sbjct: 539 NLVRFSFGVEDFEDVKADILQALEAI 564

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3202028|gb|AAC19395.1| cystathionine gamma-synthase [Mesembryanthemum crystallinum]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/548 (72%), Positives = 447/548 (81%), Gaps = 30/548 (5%)

Query: 13  SFSSSCSS-----FECRSDP-DFSGSARFDKPRISAARVIGASTASFSGVSS-LIFRFPP 65
           + +SSC +     FECR +P DFS +A   +  I  +   GA+   FS  SS LI RFPP
Sbjct: 3   AITSSCCARVLPPFECRPEPADFSTAAAKQEKNIPKSFFGGANGRLFSSSSSSLILRFPP 62

Query: 66  NFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAITSG----------- 114
           NFVRQLSTKARRNCSNIGVAQ+VAASWSN+  +G+ S     A+                
Sbjct: 63  NFVRQLSTKARRNCSNIGVAQVVAASWSNNSDAGATSCGGVPAATAVDAAAIAAVDHVEI 122

Query: 115 DDIALVD-----GLK-----NVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAI 164
           D  A+V+     G+K     N     L D +    FLSSDGS+AIHAGERLGRGIVTDAI
Sbjct: 123 DGGAVVEDSNDGGVKELSSNNSNTLGLGDFR--PPFLSSDGSVAIHAGERLGRGIVTDAI 180

Query: 165 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS 224
           TTPVVNTSAYFFKKTA+LIDFKE R+ SFEYGRYGNPT+VV+E+K+SALEGAEST+++AS
Sbjct: 181 TTPVVNTSAYFFKKTADLIDFKEGRQTSFEYGRYGNPTSVVLEDKISALEGAESTILLAS 240

Query: 225 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 284
           GM AS V++LALVPAGGHIVTTTDCYRKTRIFIET LPKMGITATVIDPAD+EGL++AL+
Sbjct: 241 GMCASIVLMLALVPAGGHIVTTTDCYRKTRIFIETFLPKMGITATVIDPADVEGLKSALD 300

Query: 285 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLH 344
            NNV+LFFTESPTNPFLRCVD+KLVS+LCHKKGA+VCIDGTFATPLNQKAL+LGAD V+H
Sbjct: 301 ENNVTLFFTESPTNPFLRCVDIKLVSELCHKKGALVCIDGTFATPLNQKALALGADFVVH 360

Query: 345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQ 404
           S TKFIGGHNDVL G ISGS  L++ IR  HHVLGG LNPNAAYL+IRGMKTLHLRVQQQ
Sbjct: 361 SMTKFIGGHNDVLGGCISGSKNLISTIRTFHHVLGGTLNPNAAYLMIRGMKTLHLRVQQQ 420

Query: 405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI 464
           N+TALRMA+ILEAHPKVK V+YPGL SHPEH +A +QMTGFGGVVSFEVDGDL  T KF+
Sbjct: 421 NTTALRMAEILEAHPKVKHVYYPGLPSHPEHKLAKRQMTGFGGVVSFEVDGDLLTTAKFV 480

Query: 465 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 524
           D+LKI YIAPSFGGCESIVDQPAIMSYWDLS S+RLKYGI DNLVRFSFGVEDFEDLKAD
Sbjct: 481 DSLKIAYIAPSFGGCESIVDQPAIMSYWDLSPSDRLKYGIKDNLVRFSFGVEDFEDLKAD 540

Query: 525 VLQALHAI 532
           VLQAL AI
Sbjct: 541 VLQALEAI 548

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430736214|gb|AGA60136.1| cystathionine gamma-synthase [Cicer arietinum]

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/528 (73%), Positives = 431/528 (81%), Gaps = 19/528 (3%)

Query: 20  SFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNC 79
           +FECRSDPDF+    FD  R         S A F   SS I RFPPNF RQLSTKARRNC
Sbjct: 11  TFECRSDPDFASLPSFDNRRTRHFPTAAVSVA-FYAASSPILRFPPNFQRQLSTKARRNC 69

Query: 80  SNIGVAQIVAASWSNSVGSGSNSAAATAASAITSGDDIALVDGLKNVQLEALADLK---- 135
           SNIGVAQIVAASWSN  GSG+ +A A    A+ S  D         + L+A+AD      
Sbjct: 70  SNIGVAQIVAASWSNE-GSGNPAAGAPPVPAVASTVDATTAP--PPLDLDAVADENVVAV 126

Query: 136 --------NEAS---FLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID 184
                   N +S   FL SD S  IHA ERLGRGIVTD ITTPVVNTSAYFFKKTA+LID
Sbjct: 127 DENGAVQTNRSSYSKFLKSDASKTIHAAERLGRGIVTDGITTPVVNTSAYFFKKTADLID 186

Query: 185 FKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV 244
           FKEKR+ S+EYGRYGNPT+ V+EEK+S LEGAESTV+MASGM AS V+L+ALVPAGGH+V
Sbjct: 187 FKEKRQTSYEYGRYGNPTSTVLEEKISELEGAESTVLMASGMCASIVLLMALVPAGGHLV 246

Query: 245 TTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV 304
           TTTDCYRKTRIFIETVLPKMGIT TV+DPAD+  LE+AL  NNVSLFFTESPTNPFLRCV
Sbjct: 247 TTTDCYRKTRIFIETVLPKMGITTTVVDPADVGALESALEQNNVSLFFTESPTNPFLRCV 306

Query: 305 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS 364
           D+KLVS+LCHK GA++CIDGTFATPLNQKAL+LGADL++HS TK++GGH+DVL G ISGS
Sbjct: 307 DIKLVSELCHKHGALLCIDGTFATPLNQKALALGADLIMHSCTKYMGGHHDVLGGCISGS 366

Query: 365 GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 424
            KL++QIR LHH+LGGALNPNAAYL IRGMKTLHLRVQQQNST +RMAK+LEAHPKVKRV
Sbjct: 367 DKLISQIRILHHILGGALNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAKLLEAHPKVKRV 426

Query: 425 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVD 484
           +YPGL SHPEH +A +QMTGFGGVVSFE+DGDLT TIKF+D+LKIPYIA SFGGCESIVD
Sbjct: 427 YYPGLPSHPEHELAMRQMTGFGGVVSFEIDGDLTTTIKFVDSLKIPYIAASFGGCESIVD 486

Query: 485 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           QPAI+SYWDL  SER KY I DNLVRFSFGVEDFEDLKAD+LQAL AI
Sbjct: 487 QPAILSYWDLPASERAKYKIYDNLVRFSFGVEDFEDLKADILQALEAI 534

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	532
TAIR|locus:2102072	563	MTO1 "METHIONINE OVERACCUMULAT	0.751	0.710	0.840	7.5e-198
TAIR|locus:2006887	412	AT1G33320 [Arabidopsis thalian	0.714	0.922	0.711	5.7e-146
UNIPROTKB|Q4KA19	424	mdeA "Methionine gamma-lyase"	0.734	0.922	0.383	1e-68
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.691	0.976	0.387	1.3e-68
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.691	0.976	0.387	1.3e-68
UNIPROTKB|Q8EG02	397	mdeA "Methionine gamma-lyase M	0.740	0.992	0.374	1.9e-67
TIGR_CMR|SO_1812	397	SO_1812 "methionine gamma-lyas	0.740	0.992	0.374	1.9e-67
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.703	0.966	0.354	5.8e-66
TIGR_CMR|CBU_2025	387	CBU_2025 "cystathionine beta-l	0.693	0.953	0.367	7.6e-64
WB|WBGene00009048	392	cth-1 [Caenorhabditis elegans	0.703	0.954	0.362	9.7e-64

TAIR|locus:2102072 MTO1 "METHIONINE OVERACCUMULATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1767 (627.1 bits), Expect = 7.5e-198, Sum P(2) = 7.5e-198
 Identities = 338/402 (84%), Positives = 369/402 (91%)

Query:   131 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR 190
             L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR 
Sbjct:   164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRS 221

Query:   191 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 250
              SFEYGRYGNPTTVV+E+K+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCY
Sbjct:   222 VSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCY 281

Query:   251 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 310
             RKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS
Sbjct:   282 RKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVS 341

Query:   311 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 370
              +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++
Sbjct:   342 KICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSE 401

Query:   371 IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 430
             IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL 
Sbjct:   402 IRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLP 461

Query:   431 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 490
             SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMS
Sbjct:   462 SHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMS 521

Query:   491 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             YWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD+LQAL AI
Sbjct:   522 YWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IMP

GO:0001887 "selenium compound metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=RCA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS;IDA

TAIR|locus:2006887 AT1G33320 [Arabidopsis thaliana (taxid:3702)]

 Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
 Identities = 271/381 (71%), Positives = 318/381 (83%)

Query:   152 GERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMS 211
             GERL R + T +ITT VVNT+ YFFK T ELIDFKEKR   +EY RYGNPTT+ +EEK+S
Sbjct:    33 GERLRRDMKTSSITTLVVNTTTYFFKDTTELIDFKEKRIDLYEYARYGNPTTMALEEKIS 92

Query:   212 ALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 271
              LEGAEST++MASGM AS VMLLALVP  GHIV T DCY++TRIF+E  L K+GIT T I
Sbjct:    93 VLEGAESTLVMASGMYASNVMLLALVPTNGHIVATKDCYKETRIFMENFLTKLGITVTFI 152

Query:   272 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN 331
             D  D+ GL+  +NN+ VSLFFTESPTNPFLRCVD+KLVS +CH++G +VCID T ATP+N
Sbjct:   153 DSDDIAGLQTLVNNHEVSLFFTESPTNPFLRCVDIKLVSKICHRRGTLVCIDATIATPIN 212

Query:   332 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII 391
             QK L+LGADLV HSATK+IGGHND LAGSISGS +LV++IRNLH +LGG LNPNAAYL+I
Sbjct:   213 QKTLALGADLVHHSATKYIGGHNDFLAGSISGSMELVSKIRNLHKLLGGTLNPNAAYLLI 272

Query:   392 RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 451
             RGMKT+HLRV+QQNST ++MA++LEAHPKV RV+Y GL SHPEH IA +QMTG GG++SF
Sbjct:   273 RGMKTMHLRVRQQNSTGMKMAQVLEAHPKVSRVYYLGLPSHPEHLIAKRQMTGIGGLISF 332

Query:   452 EVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRF 511
             E+DGDL  TIKFIDALKIPY+A SFGGCES+VDQ A    WD+ + ERLK G  DNLVRF
Sbjct:   333 EIDGDLKTTIKFIDALKIPYLAASFGGCESLVDQLAT-GIWDIPREERLKDGFQDNLVRF 391

Query:   512 SFGVEDFEDLKADVLQALHAI 532
             SFG+EDFED+KADVLQAL  I
Sbjct:   392 SFGIEDFEDIKADVLQALETI 412

GO:0003824 "catalytic activity" evidence=IEA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 152/396 (38%), Positives = 230/396 (58%)

Query:   135 KNEASFLSSDGSLA--IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 192
             K E + L + G+    +  GE++      +A   P+V ++AY +    +  D    +   
Sbjct:     4 KPERTGLENPGTATRVVWGGEQVRHPY--NATQPPIVASAAYGYDDIDQWYDVALGKAPG 61

Query:   193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 252
             F Y R  NPT   +E K+  LE AES V  +SGM+A + +L + +  G  +V+T D Y  
Sbjct:    62 FIYSRMSNPTVQTLEAKLQDLENAESAVAFSSGMAAISGVLYSFLRHGQRVVSTKDSYGG 121

Query:   253 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 312
             T    E  LP+MG+  T+ +  D + +EA +      L + E+PTNP L+ VD++ +   
Sbjct:   122 TNKIFEEFLPRMGVAVTLCETFDQQQIEAEIAKG-CDLLYLETPTNPTLKIVDIQRLVAA 180

Query:   313 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 372
               + GA+V  D TFATPLNQ  L+LG D+V+HSATKF+ GH DVL G   GS  L++Q+R
Sbjct:   181 AKQVGALVVADNTFATPLNQNPLALGVDVVIHSATKFLSGHGDVLGGVACGSEALMSQVR 240

Query:   373 NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 432
             +   + G +L+P +AYLIIRG+KTL LR++QQ  +A ++A+ L   P V+ V+YPGL +H
Sbjct:   241 HYREINGASLDPFSAYLIIRGIKTLALRMRQQQHSAAQLAQFLLNEPLVEAVNYPGLPNH 300

Query:   433 PEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW 492
             P H +A  QM GFG +VSF + G + +  + +  L+  + A + G  E+I       S+ 
Sbjct:   301 PNHAVACAQMRGFGAIVSFVLVGGMDSVKQLLPRLRYAHCAGNLGAVETIYGPARTTSHV 360

Query:   493 DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA 528
             + +  ER   GI + LVR S G+ED +DL AD+ QA
Sbjct:   361 ENTLEERQALGISEGLVRISVGIEDTDDLLADLQQA 396

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 148/382 (38%), Positives = 225/382 (58%)

Query:   149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
             IH G R+G    T ++  P+  TS Y  K+ A        +   +EY R GNPT   +EE
Sbjct:     8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57

Query:   209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
              ++ LE   +     SGM+A T  ++ L   G H++ T D Y  T   I  VL + GI  
Sbjct:    58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116

Query:   269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
             T +D  ++E +E A+  N  +++  E+PTNP L+  D+K +S L  +KG +  ID TF T
Sbjct:   117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175

Query:   329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 387
             P  Q  +SLGAD+VLHSATK++GGH+DV+AG +   S +L   +  + +  GG L P  +
Sbjct:   176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235

Query:   388 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 447
             +L++RG+KTL +R+++  + +  +A+ L  HPKV +V+YPGL SH  H +AT+Q  GFG 
Sbjct:   236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGA 295

Query:   448 VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 507
             ++SF+VD + T   K ++ L+   +A S G  ES++  P+ M++  +    R + GI D 
Sbjct:   296 IISFDVDSEETLN-KVLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDT 354

Query:   508 LVRFSFGVEDFEDLKADVLQAL 529
             L+R S G+ED EDL  D+ QAL
Sbjct:   355 LIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 148/382 (38%), Positives = 225/382 (58%)

Query:   149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
             IH G R+G    T ++  P+  TS Y  K+ A        +   +EY R GNPT   +EE
Sbjct:     8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57

Query:   209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
              ++ LE   +     SGM+A T  ++ L   G H++ T D Y  T   I  VL + GI  
Sbjct:    58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116

Query:   269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
             T +D  ++E +E A+  N  +++  E+PTNP L+  D+K +S L  +KG +  ID TF T
Sbjct:   117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175

Query:   329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 387
             P  Q  +SLGAD+VLHSATK++GGH+DV+AG +   S +L   +  + +  GG L P  +
Sbjct:   176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235

Query:   388 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 447
             +L++RG+KTL +R+++  + +  +A+ L  HPKV +V+YPGL SH  H +AT+Q  GFG 
Sbjct:   236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGA 295

Query:   448 VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 507
             ++SF+VD + T   K ++ L+   +A S G  ES++  P+ M++  +    R + GI D 
Sbjct:   296 IISFDVDSEETLN-KVLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDT 354

Query:   508 LVRFSFGVEDFEDLKADVLQAL 529
             L+R S G+ED EDL  D+ QAL
Sbjct:   355 LIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 150/401 (37%), Positives = 233/401 (58%)

Query:   134 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 192
             +++++S +    + AIHAG ER   G    ++ TP+  T+ + F    +  +        
Sbjct:     1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56

Query:   193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 252
             + Y R GNPT   +E KM+ LE AE+    ASGM A +  LLA +  G H+V +   Y  
Sbjct:    57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116

Query:   253 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 312
             T   +     + GI  T++D +D+E +E A+  N   + F E+P NP L+  D+  ++ +
Sbjct:   117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175

Query:   313 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 372
               +      +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS   + +++
Sbjct:   176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235

Query:   373 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 431
               +   +G  ++P+ A+LI+RG+KTL +R+Q+   +A R+A+ LE HP V RV+YPGLKS
Sbjct:   236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKS 295

Query:   432 HPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 491
             H  H    QQM   GGV++FE+  D T  + F+  LK+  IA S G  ES++  PA M++
Sbjct:   296 HSGHRFIGQQMRRAGGVIAFELAADFTQAMAFVGNLKLFSIAVSLGDAESLIQHPASMTH 355

Query:   492 WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
                S   R   GI DNL+R S G+ED +D+ AD+ QAL A+
Sbjct:   356 SPYSPEARAAAGIGDNLLRISVGLEDCDDIIADLSQALAAL 396

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 150/401 (37%), Positives = 233/401 (58%)

Query:   134 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 192
             +++++S +    + AIHAG ER   G    ++ TP+  T+ + F    +  +        
Sbjct:     1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56

Query:   193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 252
             + Y R GNPT   +E KM+ LE AE+    ASGM A +  LLA +  G H+V +   Y  
Sbjct:    57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116

Query:   253 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 312
             T   +     + GI  T++D +D+E +E A+  N   + F E+P NP L+  D+  ++ +
Sbjct:   117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175

Query:   313 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 372
               +      +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS   + +++
Sbjct:   176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235

Query:   373 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 431
               +   +G  ++P+ A+LI+RG+KTL +R+Q+   +A R+A+ LE HP V RV+YPGLKS
Sbjct:   236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKS 295

Query:   432 HPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 491
             H  H    QQM   GGV++FE+  D T  + F+  LK+  IA S G  ES++  PA M++
Sbjct:   296 HSGHRFIGQQMRRAGGVIAFELAADFTQAMAFVGNLKLFSIAVSLGDAESLIQHPASMTH 355

Query:   492 WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
                S   R   GI DNL+R S G+ED +D+ AD+ QAL A+
Sbjct:   356 SPYSPEARAAAGIGDNLLRISVGLEDCDDIIADLSQALAAL 396

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 137/386 (35%), Positives = 225/386 (58%)

Query:   145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
             G+  IHAG+   +   T A+  P+ + S  F + +  ++       + ++Y R GNPT  
Sbjct:    10 GTNVIHAGQSADKN--TGAVIVPI-SLSTTFLQPSPGVL------HSEYDYSRSGNPTRK 60

Query:   205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
               EE ++A E A+  +  ASG++  T  +  L+ +G  +++  D Y  TR +   V    
Sbjct:    61 AFEECIAACENAKYALSFASGLATLTT-ITHLLKSGDEVISIDDVYGGTRRYFTRVAANF 119

Query:   265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
              +  + +D + ++ L+ A  +    L + E+PTNP L+  D+K V+D  H +GA + +D 
Sbjct:   120 DLKFSFVDLSTLDDLKNAFTDKT-RLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDN 178

Query:   325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALN 383
             TF +P  Q  L LGAD+V+HS TK+I GH+D + G ++  + +L  +++ L + +G   +
Sbjct:   179 TFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPS 238

Query:   384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
             P   +L +RG+KTLH+R++     A  +   LE HPKV+RV YPGL SHP+H I  +QM 
Sbjct:   239 PFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMK 298

Query:   444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
             G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K G
Sbjct:   299 GYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLG 358

Query:   504 IMDNLVRFSFGVEDFEDLKADVLQAL 529
             I D L+R S G+ED  DL AD+ QAL
Sbjct:   359 ISDTLIRLSVGIEDINDLLADISQAL 384

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|CBU_2025 CBU_2025 "cystathionine beta-lyase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 141/384 (36%), Positives = 222/384 (57%)

Query:   149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
             IHAG++     +T A+ TP+   S Y  K               +EY R  NPT    E 
Sbjct:    16 IHAGQKPDP--LTGAVMTPIYTASTYAQKSPGV--------HQGYEYSRSQNPTRFAYER 65

Query:   209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM-GIT 267
              ++ LE  +     ASGM+A T  +L L+  G H+V   D Y  +    E V  +  G++
Sbjct:    66 CVADLESGQHGFAFASGMAA-TATILELLQPGDHVVVMDDVYGGSYRLFENVRKRSAGLS 124

Query:   268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
              + +D  D   +  A+      + + ESP+NP L+ VD+  ++++  +K  I   D TFA
Sbjct:   125 FSFVDFTDENKVREAVTAKT-KMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFA 183

Query:   328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGK-LVTQIRNLHHVLGGALNPN 385
             TP+ Q+ L LG D+V HSATK++ GH+D++ G ++ G  K L  Q++ L + +G    P 
Sbjct:   184 TPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAIGAIAAPF 243

Query:   386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
              +++++RG+KTL +R+++    A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  F
Sbjct:   244 DSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYF 303

Query:   446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
             GG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI 
Sbjct:   304 GGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGIT 363

Query:   506 DNLVRFSFGVEDFEDLKADVLQAL 529
             D  +R S G+E   DL+ D+  AL
Sbjct:   364 DGFIRLSVGIEAITDLRHDLEAAL 387

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

WB|WBGene00009048 cth-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 141/389 (36%), Positives = 229/389 (58%)

Query:   145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
             G+ A+H G+   +  +   +  P+  ++ Y      E      KR   ++Y R GNPT  
Sbjct:     8 GTDAVHVGQEPEQWDINQVVP-PISMSTTYKQDNPGE-----PKR---YDYARGGNPTRD 58

Query:   205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPK 263
             V+++ ++ALEGA+     +SG++AS+ ++  L+  G HIV + D Y  T  +I  + + K
Sbjct:    59 VLQKNLAALEGAKHCQAFSSGLAASSAVI-NLLNHGDHIVCSDDVYGGTIRYIRQIAVKK 117

Query:   264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA--IVC 321
              G+    +D  D++ LE A+  N   ++F ESP+NP L+ VD+  V     +     +V 
Sbjct:   118 YGMEVDSVDLTDVQNLEKAIKPNTKMVWF-ESPSNPLLKVVDIAAVVQTAKRANPEIVVV 176

Query:   322 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGG 380
             +D TF TP  Q+ LSLGAD+ +HS TK+I GH+D++ G+ I+ + +    +  +   +GG
Sbjct:   177 VDNTFMTPYFQRPLSLGADIAVHSITKYINGHSDIIMGAAITNNDEFQQHLHFMQRAIGG 236

Query:   381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 440
               +P   +L+ RG+KTLH+R++     AL +AK LEAH  ++ V YP L SHP+H +  +
Sbjct:   237 VPSPFDCFLVNRGLKTLHVRMKAHFENALAIAKFLEAHDCIESVLYPALPSHPQHTVHVK 296

Query:   441 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 500
             Q  G  G++SF + G+L  +  F+ ALK+  +A S GGCES+ + P+IM++  +  + R 
Sbjct:   297 QTKGMSGMISFYLKGELCQSRAFLSALKVFTLAESLGGCESLAELPSIMTHASVPSATRA 356

Query:   501 KYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
             + GI DNL+R S G+ED +DL AD+ QAL
Sbjct:   357 ELGITDNLIRISVGIEDLDDLIADLDQAL 385

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55217	METB_ARATH	2, ., 5, ., 1, ., 4, 8	0.8407	0.7518	0.7104	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.48	LOW CONFIDENCE prediction!
4th Layer	4.1.99.2	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	532
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	0.0
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-176
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-149
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	1e-120
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	1e-106
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	1e-101
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-100
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-100
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	1e-100
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	1e-98
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	9e-98
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	2e-97
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	2e-96
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	4e-94
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	2e-93
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	2e-92
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	2e-91
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	9e-91
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	4e-89
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	4e-89
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	1e-88
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	3e-85
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	1e-83
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	2e-83
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	3e-81
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	4e-81
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	5e-79
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	1e-78
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	2e-76
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	1e-75
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	8e-75
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	6e-74
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	1e-72
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	3e-70
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	2e-69
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	1e-68
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	3e-68
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	9e-66
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	5e-63
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	4e-61
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	1e-60
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	2e-56
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	4e-56
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	5e-55
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	1e-46
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	1e-45
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	3e-06
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	9e-06
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	6e-05
pfam03841	367	pfam03841, SelA, L-seryl-tRNA selenium transferase	2e-04
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	3e-04
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	0.001
PRK06425	332	PRK06425, PRK06425, histidinol-phosphate aminotran	0.002
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	0.003

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  517 bits (1334), Expect = 0.0
 Identities = 174/386 (45%), Positives = 251/386 (65%), Gaps = 8/386 (2%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +LA+HAG+R  R   T A+  P+  TS Y F                ++Y R GNPT   
Sbjct: 2   TLAVHAGQRPDRQ--TGAVVVPIYLTSTYVFDTVE---ALFAGEHGGYDYSRSGNPTRDA 56

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +EE+++ALEG E+ +  +SGM+A    LLAL+ AG H+V T D Y  T    E VLP+ G
Sbjct: 57  LEERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG 116

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           I  T +DP+D++ LEAA+  N     F E+PTNP L+ VD++ ++ +  K GA+V +D T
Sbjct: 117 IEVTFVDPSDLDALEAAIKPN-TKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNT 175

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--SGSGKLVTQIRNLHHVLGGALN 383
           FA+P  Q+ L LGAD+V+HSATK+IGGH+DV+ G +  +G  +L  ++R L +  G  L+
Sbjct: 176 FASPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLS 235

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
           P  A+L++RG+KTL LR+++    AL++A+ LE HPKV++V+YPGL SHP H +A +QM+
Sbjct: 236 PFDAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMS 295

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
           GFGG++SFE+ G L A  KF+D LK+  +A S GG ES++  PA M++  +   ER   G
Sbjct: 296 GFGGMLSFELKGGLEAASKFLDNLKLFSLAESLGGVESLISHPATMTHASIPPEEREAAG 355

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQAL 529
           I D L+R S G+ED +DL AD+ QAL
Sbjct: 356 ITDGLIRLSVGIEDVDDLIADLKQAL 381

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  501 bits (1293), Expect = e-176
 Identities = 178/369 (48%), Positives = 251/369 (68%), Gaps = 2/369 (0%)

Query: 162 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 221
            A+  P+  TS + F   AE  D    R   + Y R GNPT   +E+K++ALEG E+ + 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 281
            +SGM+A + +LLAL+ AG H+V + D Y  T    E +LPK+GI  T +DP D E LEA
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 282 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 341
           A+      L + ESPTNP L+ VD++ +++L H+ GA++ +D TFATP  Q+ L LGAD+
Sbjct: 121 AIKPE-TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADI 179

Query: 342 VLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           V+HSATK+IGGH+DV+AG + GSG+ L+ ++R L   LG  L+P  A+L++RG+KTL LR
Sbjct: 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR 239

Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           +++ +  AL++A+ LE HPKV+RV+YPGL SHP+H +A +QM+G+GGV SFE+ G L A 
Sbjct: 240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAA 299

Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
            KF++ALK+  +A S GG ES+V+ PA M++  L   ER   GI   LVR S G+ED ED
Sbjct: 300 KKFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVED 359

Query: 521 LKADVLQAL 529
           L AD+ QAL
Sbjct: 360 LIADLEQAL 368

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  432 bits (1114), Expect = e-149
 Identities = 165/387 (42%), Positives = 235/387 (60%), Gaps = 5/387 (1%)

Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
            +HAG R      T A+  P+  TS + F    E +D        ++Y R GNPT   +E
Sbjct: 12  LVHAGRRPDDL--TGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALE 69

Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
           E ++ LEG E     +SGM+A +  LLAL+ AG H++   D Y  T    E +L K G+ 
Sbjct: 70  EALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE 129

Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
            T +DP D E LEAA+   N  L F E+P+NP L   D+  ++ L    GA+V +D TFA
Sbjct: 130 VTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189

Query: 328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPN 385
           TP+ Q+ L LGAD+V+HSATK++GGH+DVL G +    + + ++         G  L+P 
Sbjct: 190 TPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPF 249

Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
            A+L++RG++TL LR+++ N  AL++A+ L  HPKVK+V+YPGL SHP H +A +QMTG+
Sbjct: 250 DAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGY 309

Query: 446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
           GG+ SFE+  +  A  KF+D+LK+  +A S GG ES++  PA M++  +   ER K GI 
Sbjct: 310 GGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGIT 368

Query: 506 DNLVRFSFGVEDFEDLKADVLQALHAI 532
           D LVR S G+ED EDL AD+ QAL   
Sbjct: 369 DGLVRLSVGLEDVEDLIADLEQALAKA 395

Length = 396

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  359 bits (923), Expect = e-120
 Identities = 158/390 (40%), Positives = 231/390 (59%), Gaps = 5/390 (1%)

Query: 144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 203
            G+ A+ AGE+    +   A   PVV + AY +    E  D    ++    Y R  NPT 
Sbjct: 9   VGTKAVWAGEK--EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTV 66

Query: 204 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLP 262
              EEK+  LEGAE+    ++GM+A +  L   +  G  +V+  D Y  T +IF E  LP
Sbjct: 67  QAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTE-FLP 125

Query: 263 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 322
           +MG+  T+ +  D E +EA +      L + E+PTNP L+ VD++ ++    K GA+V +
Sbjct: 126 RMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVV 184

Query: 323 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 382
           D TFATP+NQ  L+LGADLV+HSATKF+ GH D L G + GS +L+ Q+ +   + G  +
Sbjct: 185 DNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM 244

Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 442
           +P +AYLI+RGMKTL LRV+QQ  +A+ +AK L+ HPKV+ V+YPGL++HP H IA  QM
Sbjct: 245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQM 304

Query: 443 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 502
            GFGG++SF + G +    + +  L+  + A + G  E+I       S+ + +  ER   
Sbjct: 305 RGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAAL 364

Query: 503 GIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           GI + LVR S G+ED EDL AD+ QA   +
Sbjct: 365 GIPEGLVRISVGIEDTEDLIADLEQAFAHL 394

Length = 398

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  322 bits (826), Expect = e-106
 Identities = 153/373 (41%), Positives = 226/373 (60%), Gaps = 12/373 (3%)

Query: 160 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 219
            T AITTP+  T+AY + +        EK    + Y R  NPT + + +K+  LE AE  
Sbjct: 15  ATGAITTPIYQTTAYHYPE-------GEK----YRYSREANPTVLELTKKIVELENAEMG 63

Query: 220 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 279
           V  +SGM A +   LAL+  G  ++   D + ++  F    L   G+     +P     +
Sbjct: 64  VAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNII 123

Query: 280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 339
           E A  +    + F E+ TNP LR VD+  +S +C + G+I+ +D TF+TP+NQK L LGA
Sbjct: 124 EKA-KSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGA 182

Query: 340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 399
           D+V+HSA+KF+ GHNDV+AG  +G GKL+  I  +   LG +L+P+AAYL +RG+KTL +
Sbjct: 183 DIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKI 242

Query: 400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 459
           R+   N  A ++A+ LE HPKV +V+YPGLKSH ++ IA + + GFGGV+SFEV+G   +
Sbjct: 243 RMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQES 302

Query: 460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 519
            +K + +LK+   A + GG  S++  PA MS+  LS  ER   GI D+L+R S G+ED  
Sbjct: 303 ALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVN 362

Query: 520 DLKADVLQALHAI 532
           DL  D+ +AL  +
Sbjct: 363 DLIEDLDRALSTL 375

Length = 376

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  309 bits (793), Expect = e-101
 Identities = 146/397 (36%), Positives = 235/397 (59%), Gaps = 17/397 (4%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYG 199
            + AIH G    +     ++ TP+  TS + F  +AE    +  RR + E     Y R G
Sbjct: 10  ATKAIHGGHIGDKQF--GSLATPIYQTSTFIFD-SAE----QGGRRFAGEESGYIYSRLG 62

Query: 200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET 259
           NPT+  VE K++ LEG E+ V+ ASGM A +  L + + AG H+V +   Y  T   +  
Sbjct: 63  NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNH 122

Query: 260 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KG 317
            L + G+  T +D +++E +  AL  N   + + E+P NP L+  D+K +S++ H+  K 
Sbjct: 123 GLTRYGVEVTFVDTSNLEEVRNALKANT-KVVYLETPANPTLKVTDIKAISNIAHENNKE 181

Query: 318 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLH 375
            +V +D TF TP  Q+ L LGAD+V+HSATK++ GH DV+AG + G  + + Q++   + 
Sbjct: 182 CLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK 241

Query: 376 HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 435
            + G  + P  A+LIIRGMKTL +R+++    A+++AK LE+HP V++V+YPGL+S   +
Sbjct: 242 DMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYY 301

Query: 436 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS 495
            +A +QM+  G ++SFE+ G +      ++ +K+  +A S G  E+++  PA M++   +
Sbjct: 302 ELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYT 361

Query: 496 QSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             ER + GI D LVR S G+ED +D+ AD+ QAL  I
Sbjct: 362 AEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLI 398

Length = 400

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  309 bits (793), Expect = e-100
 Identities = 147/420 (35%), Positives = 222/420 (52%), Gaps = 38/420 (9%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
           LA+HAG+       T A   P+  T++Y F  T         +     Y R  NPTT V+
Sbjct: 11  LAVHAGQE---DPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVL 67

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           EE+++ALEG  + + +ASG +A T  +L L  AG +IV+++  Y  T       L ++GI
Sbjct: 68  EERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGI 127

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +DP D E  EAA++ N     F E+  NP L  +D++ ++++ H+ G  + +D TF
Sbjct: 128 EVRFVDPDDPENFEAAIDENT-KAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------- 367
           ATP   + +  GAD+V+HSATK+IGGH   + G I   GK                    
Sbjct: 187 ATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYH 246

Query: 368 --------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK 413
                         +     L   LG  L+P  A+L+++G++TL LR+++    AL++A+
Sbjct: 247 GLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAE 306

Query: 414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEVDGDLTATIKFIDALKIPYI 472
            LE HPKV  V+YPGL SHP H +A + +  G G V++F V G   A  KFIDALK+   
Sbjct: 307 FLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSH 366

Query: 473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             + G   S+V  PA  ++  LS+ E+   G+  +L+R S G+ED +D+ AD+ QAL A 
Sbjct: 367 LANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIEDIDDIIADLEQALEAA 426

Length = 426

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  306 bits (785), Expect = e-100
 Identities = 139/371 (37%), Positives = 221/371 (59%), Gaps = 12/371 (3%)

Query: 161 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 220
           T A++ P+   S Y  +   +           +EY R GNPT   +EE ++ LEG  +  
Sbjct: 18  TGAVSVPIYQVSTYKQEAVGK--------HQGYEYSRTGNPTRAALEELIAVLEGGHAGF 69

Query: 221 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 280
              SGM+A T +++ L  +G H++ T D Y  T   +  VL + GI  T +D +++E +E
Sbjct: 70  AFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVE 128

Query: 281 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 340
            A+  N  +++  E+PTNP L+  D+K +S +  +KG +  +D TF TP  Q  +SLGAD
Sbjct: 129 EAIRPNTKAIYV-ETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGAD 187

Query: 341 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 399
           +VLHSATK++GGH+DV+AG  +  S +L   +  + +  GG L P  ++L++RG+KTL +
Sbjct: 188 IVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI 247

Query: 400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 459
           R+++  + +  +A+ L  HP V +V+YPGL SHP H +A +Q  GFGG++SF+V  + TA
Sbjct: 248 RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETA 307

Query: 460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 519
             K ++ L+   +A S G  ES++  P+ M++  +    R + GI D L+R S G+ED E
Sbjct: 308 N-KVLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGE 366

Query: 520 DLKADVLQALH 530
           DL  D+ QAL 
Sbjct: 367 DLIEDLAQALA 377

Length = 377

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  306 bits (785), Expect = e-100
 Identities = 142/387 (36%), Positives = 227/387 (58%), Gaps = 6/387 (1%)

Query: 146 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
           +LA+ AG  R   G  ++A+      TS++ F+  AE             Y R+ NPT  
Sbjct: 9   TLAVRAGQLRSPFGEHSEALFL----TSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVT 64

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
           + +E+++ALEGAE+ V  ASGM+A   +++AL+ AG H+V++   +  T    E +  + 
Sbjct: 65  MFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF 124

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
           GI  T +D  D++   AA+  N   LFF E+P+NP     D+  ++++ H  GA++ +D 
Sbjct: 125 GIETTFVDLTDLDAWRAAVRPNT-KLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 384
            F TP  Q+ L LGAD+V+HSATK++ G   VL G++ GS +L+ ++       G  L+P
Sbjct: 184 CFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSP 243

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
             A++ ++G++TL LR++  ++ AL +A+ LEAHP V+RV YPGL SHP+H +A +Q  G
Sbjct: 244 FNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKG 303

Query: 445 FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
            G +VSFEV G   A  + IDA ++  I  + G  ++ +  PA  ++  LS   R   GI
Sbjct: 304 GGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGI 363

Query: 505 MDNLVRFSFGVEDFEDLKADVLQALHA 531
            + L+R + G+ED  D+KAD+ + L A
Sbjct: 364 TEGLIRVAVGLEDVADIKADLARGLAA 390

Length = 390

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  303 bits (777), Expect = 1e-98
 Identities = 152/386 (39%), Positives = 227/386 (58%), Gaps = 8/386 (2%)

Query: 146 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
           +LA+  G  R G     +A+      TS Y +   A            F Y RYGNPT  
Sbjct: 2   TLAVRGGMLRSGFEETAEALYL----TSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVS 57

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
           V EE+++ LEGAE+ V  ASGM+A    L+AL+ AG H+V +   +    +    +LP+ 
Sbjct: 58  VFEERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF 117

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
           G+    +D  D+   EAAL  N     F E+P+NP    VD+  V++L H  GA V +D 
Sbjct: 118 GVQTVFVDGTDLSAWEAALKPNT-KAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDN 176

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHVLGGALN 383
            FATPL Q+ L LGAD+V++SATK I G   VL G+I GS + + + ++ L    G A++
Sbjct: 177 VFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMS 236

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
           P  A+++++G++TL +RVQ QN++AL +A+ L  HP V+ V+YPGL SHP+H +A +QM+
Sbjct: 237 PFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQMS 296

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
           G G VV+F++D    A  K +DA+++  I+ + G  +S +  PA  ++  +   ER   G
Sbjct: 297 GGGTVVTFDLDCR-QAAFKVLDAMRLVDISNNLGDAKSTITHPATTTHRRMGPEERAAAG 355

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQAL 529
           I D LVR S G+ED +DL AD+ +AL
Sbjct: 356 IGDGLVRLSVGLEDVDDLIADIDRAL 381

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  301 bits (772), Expect = 9e-98
 Identities = 143/374 (38%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 161 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 220
           T A+  P+ + S      T    DF       ++Y R GNPT   +E+ ++ LEG     
Sbjct: 22  TGAVNVPIYHAS------TFHQFDFDT--FGKYDYSRSGNPTREALEDIIAELEGGTKGF 73

Query: 221 IMASGMSA-STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 279
             ASGM+A ST  LL  +  G H++ + D Y  T   I  VL + GI  T +D  ++E +
Sbjct: 74  AFASGMAAISTAFLL--LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEV 131

Query: 280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 339
              +  N   LF+ E+P+NP L+  D++ V  L    G +  +D TF TPL QK L LGA
Sbjct: 132 AQNIKPNT-KLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGA 190

Query: 340 DLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 398
           D+VLHSATKF+ GH+DVLAG ++    +L  ++  L +  G  L     +L++RG+KTLH
Sbjct: 191 DVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTLH 250

Query: 399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT 458
           +R++  + TA ++A  L+ HPKV+ V+YPGL++H    I   Q T  G V+SF +     
Sbjct: 251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL-QSEE 309

Query: 459 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 518
           A  +F+  +K+P  A S G  ESI+  PA MS+  + + ER + GI D L+R S G+E+ 
Sbjct: 310 AVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENV 369

Query: 519 EDLKADVLQALHAI 532
           +DL AD  QAL  +
Sbjct: 370 DDLIADFEQALSYV 383

Length = 390

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  300 bits (769), Expect = 2e-97
 Identities = 146/385 (37%), Positives = 218/385 (56%), Gaps = 14/385 (3%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           + AIHAG        T A+  P+  +S +       L       R  +EY R GNPT   
Sbjct: 15  TRAIHAGYEPDP--ATGAVNPPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTA 65

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +EE+++ALEG       +SGM+A+  +L A++  G HIV   D Y  T   I+ V  + G
Sbjct: 66  LEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG 125

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           +  T +D +D++ + AA+      L + E+PTNP L   D+  +++L H  GA V +D T
Sbjct: 126 VEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNP 384
           FA+P  Q+ L+LGAD+V+HS TK+IGGH+DV+ G+ ++   +L      L +  G    P
Sbjct: 185 FASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGP 244

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
             AYL +RG+KTL +R+ + +  A  +A+ L  HP+V  V YPGL SHP H +A +QM G
Sbjct: 245 FDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRG 304

Query: 445 FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
           FGG+VS  + G   A   F    K+  +A S GG ES+++ P+ M++   + S+     +
Sbjct: 305 FGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQ---LEV 361

Query: 505 MDNLVRFSFGVEDFEDLKADVLQAL 529
            D+LVR S G+ED  DL AD+ QAL
Sbjct: 362 PDDLVRLSVGIEDVADLLADLEQAL 386

Length = 388

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  297 bits (763), Expect = 2e-96
 Identities = 144/387 (37%), Positives = 233/387 (60%), Gaps = 5/387 (1%)

Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
           AIHAG          A+T P+  TS + F    +  +    + + + Y R GNPT   +E
Sbjct: 8   AIHAGYPPKDQF--GALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLE 65

Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
            +++ LEG E+ V  +SGM A    LL ++ AG H+++    Y  T   +E  L K GI 
Sbjct: 66  GRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQ 125

Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
              I+ A  E ++A + +N   ++F E+P NP ++ +D++ V    H +G  V +D TFA
Sbjct: 126 VDFINMAIPEEVKAHIKDNTKIVYF-ETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184

Query: 328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPN 385
           TP+    ++LG D+V+HSATK+IGGH DV+AG I G  +L+ QIR   +  + G  ++P 
Sbjct: 185 TPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPF 244

Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
            A+LI+RG+KTL++R+++ +  A+++A+ L++HP V++V+YPG + HP H IA +QM   
Sbjct: 245 DAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMG 304

Query: 446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
           GG+++FE+ G      K ++ LK+  +A S G  E+++  PA M++  + + ER   GI 
Sbjct: 305 GGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGIT 364

Query: 506 DNLVRFSFGVEDFEDLKADVLQALHAI 532
           D ++R S G+ED +DL AD+ QAL A+
Sbjct: 365 DGMIRLSVGLEDADDLIADLKQALDAL 391

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  292 bits (749), Expect = 4e-94
 Identities = 141/371 (38%), Positives = 218/371 (58%), Gaps = 3/371 (0%)

Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           A+  PV  T+ + F       +          Y R  NPT  ++E++M++LEG E+ V +
Sbjct: 27  ALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVAL 86

Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           ASGM A T  L  L+  G  ++     Y  T  F+   L + G+T   +D  D   L+AA
Sbjct: 87  ASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAA 146

Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           +++    ++F E+P NP +R VD+  V+++ H  GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 ISDKTRMVYF-ETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLV 205

Query: 343 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           +HSATK++GGH D+ AG + G   L  +IR   L  + G  ++P  A+L++RG+KTL LR
Sbjct: 206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALR 265

Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           + +  ++A  +A+ L  HP V+ VHYPGL S  +H +A +QM   GG+++FE+ G + A 
Sbjct: 266 MDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAG 325

Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
            +F++AL++   A S G  ES+   PA M++   +  ER ++GI + LVR S G+ED  D
Sbjct: 326 RRFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVAD 385

Query: 521 LKADVLQALHA 531
           + AD+ QAL A
Sbjct: 386 ILADLAQALDA 396

Length = 403

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  289 bits (742), Expect = 2e-93
 Identities = 138/392 (35%), Positives = 210/392 (53%), Gaps = 12/392 (3%)

Query: 144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 203
            G+ A+             ++  P+  T+ +  +  A   D    R    +Y R  NPT 
Sbjct: 3   RGTDAVRGYRGSDP---YGSLQPPIYLTALFRQEGEAYPSD----RGFDLKYSREENPTL 55

Query: 204 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 263
             +EE ++ LEG    +   SGM+A + +  +L+ AG  +V   + Y  T + +   L K
Sbjct: 56  RPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTT-LRLLKSLEK 114

Query: 264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 323
            G+   +  P   E +  A+      L F E+ TNP L+ +DV  V+    + GAI+ +D
Sbjct: 115 FGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD 173

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGAL 382
            TFATPL  + L  GAD V+HS TK+I GHNDV+ G  ++ SG+ + ++      LG  +
Sbjct: 174 NTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM 233

Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 442
            P  AYL++RG+KTL +R ++Q   A+ +A+ L  HPKV  V+YPGL S P H +A +  
Sbjct: 234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLF 293

Query: 443 TG--FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 500
               +GGVVSF V G   A +KF+ +LK+   +PS GG ES+   P   +   + + +R 
Sbjct: 294 GKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRK 353

Query: 501 KYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             GI ++LVR S G+ED EDL  D+ QAL +I
Sbjct: 354 ALGITEDLVRLSVGLEDVEDLIEDLDQALGSI 385

Length = 385

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  286 bits (734), Expect = 2e-92
 Identities = 143/385 (37%), Positives = 223/385 (57%), Gaps = 14/385 (3%)

Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           IH G  +     T A++ P+  TS Y  ++ A        R   +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDTTTGAVSVPIYQTSTY--RQDAI------GRPKGYEYSRSGNPTRFALEE 57

Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
            ++ LEG       ASG+ A    + +L  +G H++   D Y  T    + VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSC 116

Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 387
           P  Q  L LGAD+V+HS TK++GGH+DV+AG + + +  L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 388 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 447
           +L+ RG+KTL LR++     AL +A+ LE HPKV++V+YPGL +HP H +A +QM GF G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSG 295

Query: 448 VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 507
           ++SF +  D +  + F+++LK+  +  S GG ES+V  PA M++  + + +R   GI D 
Sbjct: 296 MLSFTLKND-SEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDG 354

Query: 508 LVRFSFGVEDFEDLKADVLQALHAI 532
           LVR S G+E  +DL  D+ QA   I
Sbjct: 355 LVRLSVGIEHEQDLLEDLEQAFAKI 379

Length = 380

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  284 bits (729), Expect = 2e-91
 Identities = 133/380 (35%), Positives = 207/380 (54%), Gaps = 14/380 (3%)

Query: 158 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 213
           G+ +D     +  P+  ++ Y F        F E R  +++Y R GNPT  ++++ ++ L
Sbjct: 12  GLNSDTQYGCVVPPIYLSTTYNFT------GFNEPR--AYDYSRSGNPTRDLLQQALAEL 63

Query: 214 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 273
           EG    V+  +GMSA  ++  AL+     +V   DCY  T   +  +  K       +D 
Sbjct: 64  EGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123

Query: 274 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 333
            D + L AAL      L   E+P+NP LR VD+  +  L    GA+V +D TF +P  Q 
Sbjct: 124 GDEQALRAALAQK-PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN 182

Query: 334 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 392
            L+LGADLVLHS TK++ GH+DV+AG+ I+   ++  ++    + LG       +YL +R
Sbjct: 183 PLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242

Query: 393 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 452
           G++TL  R++ Q   A  + + L+  P VK+++YPGL  HP H IA +Q  GFG ++SFE
Sbjct: 243 GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFE 302

Query: 453 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 512
           + G      +F+  L +  +A S GG ES++  PA M++  +    R + GI D L+R S
Sbjct: 303 LKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLS 362

Query: 513 FGVEDFEDLKADVLQALHAI 532
            G+ED +DL AD+ Q L A 
Sbjct: 363 VGLEDADDLIADLEQGLRAA 382

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  283 bits (727), Expect = 9e-91
 Identities = 148/422 (35%), Positives = 230/422 (54%), Gaps = 44/422 (10%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +L +HAG+       T +   P+  T++Y F  T         + A   Y R  NPTT V
Sbjct: 4   TLQLHAGQEPDP--TTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDV 61

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +E++++ALEG  + + +ASG +A T  +L L  AG +IV+++  Y  T    +  L ++G
Sbjct: 62  LEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLG 121

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           I    +DP D E  E A++ N  ++F  E+  NP +   D++ ++++ H  G  + +D T
Sbjct: 122 IEVRFVDPDDPEEFEKAIDENTKAVFA-ETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 367
           FATP   + +  GAD+V+HSATK+IGGH   + G I   GK                   
Sbjct: 181 FATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYH 240

Query: 368 ------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 409
                             V  +R+    LG AL+P  A+L+++G++TL LR+++    AL
Sbjct: 241 GLVFTETFGNPAFIVKARVQLLRD----LGAALSPFNAFLLLQGLETLSLRMERHVENAL 296

Query: 410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEVDGDLTATIKFIDALK 468
           ++A+ LEAHPKV  V+YPGL SHP H +A + +  GFG V+SFE+ G   A  KFIDALK
Sbjct: 297 KVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALK 356

Query: 469 IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA 528
           +     + G  +S+V  PA  ++  LS+ E+LK G+   L+R S G+E+ +D+ AD+ QA
Sbjct: 357 LASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENIDDIIADLEQA 416

Query: 529 LH 530
           L 
Sbjct: 417 LE 418

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  278 bits (713), Expect = 4e-89
 Identities = 148/389 (38%), Positives = 212/389 (54%), Gaps = 22/389 (5%)

Query: 148 AIHAGE----RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 203
           A+ +GE    R G       +TTP+  TS + +  + +       R   + Y R+GNPT 
Sbjct: 13  AVQSGELRDPRFGN------VTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTV 66

Query: 204 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 263
              EEK + LE AE  +  +SGM A T  +L+L+  G  I++ +D Y +T  F   VL  
Sbjct: 67  QAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT 126

Query: 264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 323
           +GI    ID   +  L+   + +N  L + ES TNP L+  D+K VS  CH+   IV  D
Sbjct: 127 LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHENDVIV--D 182

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGAL 382
            TFA+P NQ  L LGAD+V+HSATK+I GH+DV+ G    + K +   +      LG   
Sbjct: 183 ATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNP 242

Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 442
           +P  AYL +RG+KTL LR+++ N   + +A+ L    K+  V+YP  +      I  + +
Sbjct: 243 DPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVL 296

Query: 443 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 502
            GFGG++SFE+        KFI  L+IP +A S GG ES++  P   S+  LS  ER + 
Sbjct: 297 RGFGGMLSFELRSMEDVH-KFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERL 355

Query: 503 GIMDNLVRFSFGVEDFEDLKADVLQALHA 531
           GI DNLVRFS G+ED +DL  D+  AL  
Sbjct: 356 GISDNLVRFSIGIEDIDDLIKDIENALSK 384

Length = 384

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  278 bits (714), Expect = 4e-89
 Identities = 135/343 (39%), Positives = 202/343 (58%), Gaps = 6/343 (1%)

Query: 193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 252
           F Y RY NPT  + E++M ALEGAE     ASGM+A T  +L  V AG H+V     +  
Sbjct: 57  FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARALFGS 116

Query: 253 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 312
            R  +ET+LP+ GI +T++D  D++  E A+  N   +FF ESPTNP L  +D+  V+ +
Sbjct: 117 CRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNT-KVFFLESPTNPTLEVIDIAAVAKI 175

Query: 313 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 372
            ++ GA + +D  FATPL QK L LGA +V++SATK I G    L G +      + +  
Sbjct: 176 ANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEE-- 233

Query: 373 NLHHVL---GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 429
           +L       G +L+P  A+ +++G++TL +RV+QQ  +A  +A  L  HPKV RV YPG 
Sbjct: 234 HLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGR 293

Query: 430 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 489
             HP+  I  +QMTG   +V+FE+ G   A  +F++ALKI  I+ + G  +S++  PA  
Sbjct: 294 ADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATT 353

Query: 490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           ++ +LS   R + GI +  +R S G+ED +DL  D+  AL  +
Sbjct: 354 THKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKV 396

Length = 398

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  277 bits (710), Expect = 1e-88
 Identities = 135/386 (34%), Positives = 206/386 (53%), Gaps = 10/386 (2%)

Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
            IH G          ++T P+  TS + F+   +          S+ Y R GNPT  + E
Sbjct: 10  LIHHGYT--SEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFE 67

Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
           E+M+ LEG E  +   SGM+A +  L+  + AG HI+ +   Y  T  F+E +  K  IT
Sbjct: 68  ERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMIT 127

Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
            +  D      +E  +  N   L F E+P NP ++ +D+K V  +  + G +V +D TF 
Sbjct: 128 HSFCDMETEADIENKIRPNTK-LIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186

Query: 328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNA 386
           +P  Q+ L LG D V+HSATK+IGGH DV+AG      + L  +IR +   +GG + P  
Sbjct: 187 SPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFD 246

Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           A+L++RG+KTL +R+ +    A ++   L+ H  V+ V Y      PE  +A++QM   G
Sbjct: 247 AWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWY------PEGELASRQMKRGG 300

Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           GV+SF + G    T  FI+ L    IA S G  E+++  PA M++  +    R + GI D
Sbjct: 301 GVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYD 360

Query: 507 NLVRFSFGVEDFEDLKADVLQALHAI 532
           NL+R S G+E +ED+ +D+ QAL  I
Sbjct: 361 NLIRLSVGLESWEDIVSDLEQALKKI 386

Length = 386

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  268 bits (688), Expect = 3e-85
 Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 17/375 (4%)

Query: 162 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 221
           DA+  P+  TS + F    E+ D     +    Y R  NPT    EE ++ LEGAE    
Sbjct: 24  DAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARG 83

Query: 222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 281
            ASGM+A +  +L+ V  G  IV     Y       ET+L +MG+    +D  D E +  
Sbjct: 84  FASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAK 143

Query: 282 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 341
           AL      L + ESPT+      DV  ++ L  + G +  ID ++A+P+ Q+ ++LG DL
Sbjct: 144 AL--PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDL 201

Query: 342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNPNAAYLIIRGMKTLHLR 400
           V+HSA+K++GGH+D +AG ++GS + + +I    +  LG  L+P  A+L++RG++TL LR
Sbjct: 202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLPLR 261

Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           ++   ++AL +A+ L+AHP V+RV +P L +HP    A   ++G  G+ SF     +   
Sbjct: 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPP---AG--LSGTSGLFSFIFREGIDVR 316

Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL----KYGIMDNLVRFSFGVE 516
             F DALK+  +  S+GG ES+V  PA +    L Q  +     ++G+    VR   G+E
Sbjct: 317 -AFADALKLFRLGVSWGGHESLV-VPAEVV---LQQKAQPNSAARFGVSPRSVRLHVGLE 371

Query: 517 DFEDLKADVLQALHA 531
             E L AD+ QAL A
Sbjct: 372 GTEALWADLEQALAA 386

Length = 389

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  265 bits (678), Expect = 1e-83
 Identities = 134/346 (38%), Positives = 203/346 (58%), Gaps = 14/346 (4%)

Query: 193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 252
           F Y RYGNPT  + EE++  +EGAE+    ASGMSA    L AL+ AG  +V     +  
Sbjct: 62  FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGS 121

Query: 253 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 312
             +    +LP+ G+    +D  D+   E AL+    ++FF E+P+NP    VD+  VS+L
Sbjct: 122 CFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF-ETPSNPMQSLVDIAAVSEL 180

Query: 313 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-----GKL 367
            H  GA V +D  FATPL Q+ L LGAD+V++S TK I G   VL G+I G      G +
Sbjct: 181 AHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPV 240

Query: 368 VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 427
              +R+     G AL+   A+++++G++TL LRV+  N++ALR+A+ LE HP V+ V YP
Sbjct: 241 QKLMRHT----GPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYP 296

Query: 428 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA----TIKFIDALKIPYIAPSFGGCESIV 483
            L SHP++ +A +QM+G G VV+FE+D    A      + +D L++  I+ + G  +S++
Sbjct: 297 FLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLI 356

Query: 484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
             PA  ++  +    R   G+ D +VR S G+ED +DL AD+ +AL
Sbjct: 357 THPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL 402

Length = 403

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  263 bits (673), Expect = 2e-83
 Identities = 127/341 (37%), Positives = 184/341 (53%), Gaps = 22/341 (6%)

Query: 195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 254
           YGR  NPT   +E  +  LEGAE  ++  SGM+A T +L AL+  G  +V   D Y + R
Sbjct: 45  YGRASNPTWRALEAALGELEGAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVR 103

Query: 255 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 314
                 L  +G+T      A M   EAAL      L   E+P+NP L   D+  ++   H
Sbjct: 104 ALAREYLAPLGVTVREAPTAGM--AEAALAG--ADLVLAETPSNPGLDVCDLAALAAAAH 159

Query: 315 KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRN 373
             GA++ +D T ATPL Q+ L LGADLV+ S TK + GH+D+L G ++G   +L+  +  
Sbjct: 160 AAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER 219

Query: 374 LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 433
              + G    P  A+L  R + TL LR  +Q + AL +A++L  HP V+ V YPGL   P
Sbjct: 220 WRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDP 279

Query: 434 EHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD 493
            H +A +QM  FGG+VSFE+  D  A  +F+ A ++   A SFGG  +  D+        
Sbjct: 280 AHEVAARQMRRFGGLVSFEL-ADAAAAERFVAASRLVVAATSFGGVHTSADR-------- 330

Query: 494 LSQSERLKYG--IMDNLVRFSFGVEDFEDLKADVLQALHAI 532
                R ++G  + +  VR S G+ED +DL AD+ +AL A+
Sbjct: 331 -----RARWGDAVPEGFVRLSCGIEDTDDLVADLERALDAL 366

Length = 366

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  257 bits (658), Expect = 3e-81
 Identities = 124/371 (33%), Positives = 200/371 (53%), Gaps = 28/371 (7%)

Query: 160 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 219
            T  +  PV  ++AY  +   E           F+Y R GNPT  V+E+ ++ LEG +  
Sbjct: 19  RTGTVNPPVYFSTAYRHEGIGE--------STGFDYSRTGNPTRGVLEQAIADLEGGDQG 70

Query: 220 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 279
              +SGM+A  + +++L  +G  ++ ++D Y  T    E    K  +    ++ A ++ +
Sbjct: 71  FACSSGMAAIQL-VMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAI 129

Query: 280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 339
           E A+  N  ++F  E+PTNP ++  D+  ++ +  K G ++ +D TF TP+ Q+ L  GA
Sbjct: 130 EQAITPNTKAIFI-ETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGA 188

Query: 340 DLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 398
           D+V+HSATK++GGHNDVLAG +   G+ L  ++    +  G  L+P  ++L+IRGMKTL 
Sbjct: 189 DIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA 248

Query: 399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT 458
           LR++Q    A  +A  L   P V  V YPG                 GG++SF +  D  
Sbjct: 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPGR----------------GGMLSFRLQ-DEE 291

Query: 459 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 518
               F+ +LK+   A S GG ES +  PA  ++ D+ +  R+  G+ + L+RFS G+E+ 
Sbjct: 292 WVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENV 351

Query: 519 EDLKADVLQAL 529
           EDL AD+ QA 
Sbjct: 352 EDLIADLKQAF 362

Length = 366

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  258 bits (660), Expect = 4e-81
 Identities = 134/394 (34%), Positives = 209/394 (53%), Gaps = 29/394 (7%)

Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           A+  P+  +  Y ++   +LID  + ++  F Y R G PTT  +E K++ +EG   TV  
Sbjct: 9   AVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCF 68

Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           A+GM+A   + L L+ AG H+V++   +  T     T L  +G+  T++D  D++ + AA
Sbjct: 69  ATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAA 127

Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           +  N   + F E+  NP  +  D+  +  LC ++G +  +D T  +P   +   +GA LV
Sbjct: 128 IRPNT-RMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLV 186

Query: 343 LHSATKFIGGHNDVLAGSISGSGKL---------------------VTQIRN--LHHVLG 379
           ++S +K+I GH + L G+++ +G                       +TQIR   L   +G
Sbjct: 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRD-MG 245

Query: 380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 439
             L+  AA+ I  G +TL LRV +  S AL +A+ LEAHPKV RV+YPGL SHP+H  AT
Sbjct: 246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARAT 305

Query: 440 QQMTGFGGVVSFE-VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 498
           +    +GG++SFE  DG       F++ LK+   A   G   ++V   A   Y+++    
Sbjct: 306 ELFRHYGGLLSFELADGI--DCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAER 363

Query: 499 RLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           R   GI D+L+R S G+ED  DL AD  QAL A 
Sbjct: 364 RASMGIADSLIRVSVGIEDEADLIADFEQALDAT 397

Length = 397

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  252 bits (645), Expect = 5e-79
 Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 16/372 (4%)

Query: 164 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 223
           +  P+  +S Y F        F E R  + +Y R GNPT  VV+  ++ LEG    V+  
Sbjct: 23  VVPPIHLSSTYNF------TGFNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74

Query: 224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 283
           +GMSA  ++    +  G  +V   DCY  +    +++  +       +D  D + L AAL
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134

Query: 284 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 343
                 L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVL 193

Query: 344 HSATKFIGGHNDVLAGS-ISGSGKLVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHL 399
           HS TK++ GH+DV+AG  I+    +VT++    N   V GGA +   +YL++RG++TL  
Sbjct: 194 HSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250

Query: 400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 459
           R++     A  + K L+  P VK++++P L  +  H IA +Q  GFG ++SFE+DGD   
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQT 310

Query: 460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 519
             +F+  L +  +A S GG ES++   A M++  ++   R   GI + L+R S G+ED E
Sbjct: 311 LRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGE 370

Query: 520 DLKADVLQALHA 531
           DL AD+     A
Sbjct: 371 DLIADLENGFRA 382

Length = 386

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  253 bits (647), Expect = 1e-78
 Identities = 129/393 (32%), Positives = 205/393 (52%), Gaps = 23/393 (5%)

Query: 163 AITTPVVNTSAYFFKKTAELIDFKEK---RR-------ASFEYGRYGNPTTVVVEEKMSA 212
           A+  PV  TS + F+   +  DF +    R+       A   Y R+ +P + +VE++++ 
Sbjct: 35  AVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAV 94

Query: 213 LEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV-- 270
            EGAES  + +SGMSA    LLA V  G  I+ +   Y  T   +       G+ A    
Sbjct: 95  YEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA 154

Query: 271 --IDPADME-GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA------IVC 321
             +  A +    EAA     VSL   E+P NP    VDV  V  +     A      I+ 
Sbjct: 155 DGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIA 214

Query: 322 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA 381
            D T   P+ QK L  GADL ++S TK++GGH+D++AG++ G   L+ Q+R L   +G  
Sbjct: 215 CDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQ 274

Query: 382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL--KSHPEHHIAT 439
           L+P++ +++ R ++TL LR+++ N  A  +A+ L  HPKV+++HY            +  
Sbjct: 275 LDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK 334

Query: 440 QQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER 499
           +Q TG G   SF++ G   A  +F++AL+I  +A S GG ES+   PA M++  +    R
Sbjct: 335 RQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVR 394

Query: 500 LKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
            + G++++ +R S G+E  +DL AD+ QAL A 
Sbjct: 395 ERIGVLESTIRLSIGIEHPDDLIADLAQALDAA 427

Length = 427

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  245 bits (628), Expect = 2e-76
 Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 4/340 (1%)

Query: 191 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 250
             ++Y R GNPT   +E  ++ L+ A+     +SGM+A  V +  L+  G  I+   D Y
Sbjct: 37  GPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDV-ITRLLNNGDEIIAGDDLY 95

Query: 251 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 310
             T   +  V+P+ G+    +D  D++ ++AAL      L   ESPTNP  + VD++ +S
Sbjct: 96  GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPK-TKLVLLESPTNPLQKIVDIRKIS 154

Query: 311 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVT 369
           ++ H + A+V +D T  +PL    L LGAD+V HSATKF+ GH+DV+AG +     ++  
Sbjct: 155 EMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAK 214

Query: 370 QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 429
           ++  L +  G  L P   +L++RG+KTL +R+++Q   A  +A  L  HP+VK+V Y GL
Sbjct: 215 KVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGL 274

Query: 430 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 489
            SHP  H+   Q  G G V+SFE  G +  + + ++A K+  I  SFG   S++  P  M
Sbjct: 275 PSHPGFHLHFSQAKGAGSVLSFET-GSVALSKRLVEATKLFSITVSFGSVNSLISMPCFM 333

Query: 490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
           S+  +    R + G+ ++LVR S G+ED +DL +D+  A 
Sbjct: 334 SHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAF 373

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  245 bits (626), Expect = 1e-75
 Identities = 140/420 (33%), Positives = 227/420 (54%), Gaps = 37/420 (8%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +LAIHAG+ +     + A+  P+  T++Y F+ +    +    +     Y R  NPTT V
Sbjct: 11  TLAIHAGQEIDPTTGSRAV--PIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDV 68

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
            E++++ALEG    + ++SG +A T  +L +  AG  IV+++  Y  T       LPK+G
Sbjct: 69  FEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG 128

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           IT   +DP+D E  EAA+ +   +L F E+  NP    +D++ V+ + H+ G  + +D T
Sbjct: 129 ITVKFVDPSDPENFEAAITDKTKAL-FAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 367
           FA+P   + +  GAD+V+HSATKFIGGH   + G I  SGK                   
Sbjct: 188 FASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSY 247

Query: 368 --------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 412
                         +T+ R  L   LG AL+P  ++L+++G++TLHLR+++ +  AL +A
Sbjct: 248 HGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVA 307

Query: 413 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPY 471
           K LE H  V+ V YPGL SHP + +A + +  G G +++F + G + A  K ID++K+  
Sbjct: 308 KFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFS 367

Query: 472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 531
              + G  +S++  PA  ++  LS+ E+L  G+   LVR S G E  +D+  D+ QA+  
Sbjct: 368 HLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEAIDDILDDLRQAIRQ 427

Length = 431

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  242 bits (618), Expect = 8e-75
 Identities = 151/390 (38%), Positives = 220/390 (56%), Gaps = 26/390 (6%)

Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
           A+ AG  + R     A+T P+V +S + F        F  KR+  ++Y R GNPT  ++ 
Sbjct: 17  AVRAG--IDRDTAYGAVTPPIVLSSNFSFDG------FGNKRQ--YDYTRSGNPTRDLLG 66

Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMG- 265
           E ++ LEG    VI A+GM A  ++L AL+  G  +V   D Y  + R+F    L K G 
Sbjct: 67  EALAELEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLF--NALAKKGH 124

Query: 266 ---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 322
              ITA + DP     L  AL  +   L   E+P+NP LR  D++ V +  HK GA+  +
Sbjct: 125 FALITADLTDP---RSLADALAQSP-KLVLIETPSNPLLRITDLRFVIEAAHKVGALTVV 180

Query: 323 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGA 381
           D TF +P  QK L  GADLVLHS TK+I GH+DV+ G+ ++   +L  Q+    + LG  
Sbjct: 181 DNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT 240

Query: 382 LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 439
            +P  A+L +RG++TL   LRV Q+N+ A+  A +L+ H  V +V+YPGL SHP H +A 
Sbjct: 241 GSPFDAFLTLRGLRTLDARLRVHQENADAI--AALLDGHAAVNQVYYPGLASHPGHALAA 298

Query: 440 QQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER 499
           +Q  GFG ++SFE++G   A   F+D L+   +A S GG ES++  PA M++  ++   R
Sbjct: 299 RQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTHAAMTAEAR 358

Query: 500 LKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
              GI D L+R S G+E  EDL  D+   L
Sbjct: 359 AAAGISDGLLRLSVGIESAEDLLIDLRAGL 388

Length = 405

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  240 bits (615), Expect = 6e-74
 Identities = 132/420 (31%), Positives = 209/420 (49%), Gaps = 37/420 (8%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +LA+HAG        T A   P+  T+++ F+ +          RA   Y R  NPT  V
Sbjct: 11  TLALHAGAA--PDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAV 68

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +EE+++ALEG    +  ASG +A  + +  L+ AG HIV ++  Y  +   +   L + G
Sbjct: 69  LEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG 128

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           I  T + P D++G  AA+  N   L F E+  NP L  +D+  V+ + H+ G  + +D T
Sbjct: 129 IETTFVKPGDIDGWRAAIRPNT-RLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK---LVTQIRNL 374
           F TP   +    GADLV HSATKF+GGH   + G +          SGK   L       
Sbjct: 188 FTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF 247

Query: 375 HHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 412
           H +                       G  L+P  A+ +++G++TL LR+++  +   ++ 
Sbjct: 248 HGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVV 307

Query: 413 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPY 471
             L +HP V RV +P L+SHP+H +A + +  G G V SF++ G   A  KFI++LK+  
Sbjct: 308 AFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFS 367

Query: 472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 531
              + G   S+V  PA  +++ +  +     GI +  +R S G+ED +DL  D+ +AL A
Sbjct: 368 HLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLEDADDLIDDLKRALKA 427

Length = 433

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  237 bits (606), Expect = 1e-72
 Identities = 140/416 (33%), Positives = 214/416 (51%), Gaps = 36/416 (8%)

Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           IHAG+       T+A   P+  T++Y F  T               Y R  NPT  VVE+
Sbjct: 19  IHAGQ--TPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQ 76

Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
           +++ALEG  + +++ASG +A T  +L L  AG HIV++   Y  T       LPK+GI  
Sbjct: 77  RIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV 136

Query: 269 T-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
           + V DP D++   AA+  N    FF E+ +NP +  +D+  V+++ H+ G  + +D T A
Sbjct: 137 SFVEDPDDLDAWRAAVRPNT-KAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIA 195

Query: 328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIR---------NLHHV 377
           TP   + L  GAD+V+HSATK++GGH   +AG I   G    TQ R         + H V
Sbjct: 196 TPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGV 255

Query: 378 ---------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE 416
                                LG A++P  A+LI +G++TL LR+++  + A R+A+ LE
Sbjct: 256 VFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLE 315

Query: 417 AHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 475
           A  +V  V+Y GL S P +  A +    G G V+SFE+ G + A   F++AL +     +
Sbjct: 316 ARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVAN 375

Query: 476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 531
            G   S+V  PA  ++  L+  E+L  G+   LVR + G+E  +D+ AD+     A
Sbjct: 376 IGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIEGIDDILADLEAGFAA 431

Length = 436

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  230 bits (589), Expect = 3e-70
 Identities = 139/421 (33%), Positives = 217/421 (51%), Gaps = 38/421 (9%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +LAIHAG        T A+  P+  T++Y F  T    D  + +     Y R  NPT  V
Sbjct: 5   TLAIHAG--YSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDV 62

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +E++++ALEG    + +ASGM+A T  +  +  AG +IV+    Y  T   +   LP++G
Sbjct: 63  LEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG 122

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           I        D+  LEA ++    ++ F ES  NP    +D++ ++D  H+ G  + +D T
Sbjct: 123 IETRFAAHDDIAALEALIDERTKAV-FCESIGNPAGNIIDIQALADAAHRHGVPLIVDNT 181

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK------------LVTQIRN 373
            ATP+  +    GAD+V+HS TK+IGGH   + G +  SGK            L T   +
Sbjct: 182 VATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPS 241

Query: 374 LHHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 411
            H V                      +G AL+P  A+LI++G++TL LR+++    AL++
Sbjct: 242 YHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKV 301

Query: 412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEVDGDLTATIKFIDALKIP 470
           A+ L+ HP+V  V Y GL  HPEH +A + M G    ++SF + G   A  +FIDALK+ 
Sbjct: 302 ARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLV 361

Query: 471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 530
               + G  +S+   PA  ++  L+  E  K G+  ++VR S G+E  +D+ AD+ QAL 
Sbjct: 362 VRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGIEHIDDIIADLAQALD 421

Query: 531 A 531
           A
Sbjct: 422 A 422

Length = 425

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  227 bits (581), Expect = 2e-69
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 14/377 (3%)

Query: 158 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 213
           GI +D    A+  P+  ++ Y F    E+          ++Y R GNP   ++E+ +S L
Sbjct: 14  GIESDSQYHAVVPPIYLSTNYGFPAFGEV--------PKYDYTRSGNPNRGLLEQTLSEL 65

Query: 214 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 273
           E  +  V+   G SA  + + AL+     IV   DCY  T     T   K       +D 
Sbjct: 66  ESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125

Query: 274 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 333
           +D   L+AAL      L   E+P+NP +R VD+  +       GA+V +D TF TP+ QK
Sbjct: 126 SDAAALDAALAKKP-KLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK 184

Query: 334 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 392
            L LGAD V+HS TK+I GH+DV+ G  I+ + +   ++    + +G    P  +Y+ +R
Sbjct: 185 PLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLR 244

Query: 393 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 452
           G++TL  R++    +A ++   L+    V  +++P L  HP H IA +Q +GFG ++SFE
Sbjct: 245 GIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFE 304

Query: 453 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 512
             G       F+ AL +  +A S GG ES++  PA M++  + +    + G+   L+R S
Sbjct: 305 FAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLS 364

Query: 513 FGVEDFEDLKADVLQAL 529
            G+ED +DL AD+ QA 
Sbjct: 365 VGLEDAQDLIADLDQAF 381

Length = 388

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  225 bits (575), Expect = 1e-68
 Identities = 119/373 (31%), Positives = 188/373 (50%), Gaps = 15/373 (4%)

Query: 164 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 223
           +  PVV+ S   F     +      R   + YG  G PTT  + + + ALEG+  T+++ 
Sbjct: 31  VNPPVVHASTVLFPDAETM----ATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVP 86

Query: 224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 283
           SG++A TV  L  +  G H +     Y  TR F +T+L ++G+     DP    G+   L
Sbjct: 87  SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAK-L 145

Query: 284 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 343
              N  +  TE+P +      D+  +++  H+ GAIV +D T+ATPL  + L  G D+ +
Sbjct: 146 MRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISI 205

Query: 344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 403
           H+ATK+  GH+D+L G++S + K   Q+   H  LG    P+  Y I+RG++T+ +R++ 
Sbjct: 206 HAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGIRLEH 265

Query: 404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK- 462
              +AL +A+ LE  P V RV +P L S P H I  +  +G  G+ SF +          
Sbjct: 266 HRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAK 325

Query: 463 ---FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 519
              F+DAL+I  +  S+GG ES+    A+     L      K      ++R   G+ED  
Sbjct: 326 AHAFLDALEIFGLGYSWGGYESL----ALHVK--LGDRTVAKAPYAGPVIRLQIGLEDVP 379

Query: 520 DLKADVLQALHAI 532
           DLKAD+ +   A 
Sbjct: 380 DLKADLERGFAAA 392

Length = 395

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  223 bits (571), Expect = 3e-68
 Identities = 111/388 (28%), Positives = 190/388 (48%), Gaps = 18/388 (4%)

Query: 149 IHAGE---RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           IH+G             ++  P+   S   F   A       + +    YGR G  T   
Sbjct: 4   IHSGRQPRFSQG-----SVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFA 54

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +++ M  LEG     +  SG++A T  +LA V AG H++     Y  TR F + VL +MG
Sbjct: 55  LQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMG 114

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           +  T  DP   E + A L   N  + F E+P++      D+  ++      G ++ ID T
Sbjct: 115 VDITYYDPLIGEDI-ATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 385
           +A  L  K L  G D+ + + TK++ GH+D++ G++  + +   Q+R   +++G  ++ +
Sbjct: 174 WAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD 233

Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
            AY  +RG++TL +R++Q   ++L +AK L   P+V RV +P L S P H    +  +G 
Sbjct: 234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGS 293

Query: 446 GGVVSFEVDG-DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
            G+ SF +          F+D L++  +  S+GG ES+    A+ +  +L     +K  +
Sbjct: 294 SGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESL----ALCNQPELGHRPNIKRNL 349

Query: 505 MDNLVRFSFGVEDFEDLKADVLQALHAI 532
              L+R   G+E+ +DLKAD+     AI
Sbjct: 350 EGPLIRVHIGLENVDDLKADLKAGFEAI 377

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  220 bits (561), Expect = 9e-66
 Identities = 124/369 (33%), Positives = 209/369 (56%), Gaps = 12/369 (3%)

Query: 162 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 221
           DA++TP+  T+   FK+ + +          ++Y R GNPT   +E  ++ L+ A+    
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153

Query: 222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 281
             SGM+A +  +  L+  G  IV   D Y  +   +  V+P+ G+    ++  +++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAA 212

Query: 282 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 341
           A+      L + ESPTNP  +  D++ ++++ H +GA+V +D +  +P+  + L LGAD+
Sbjct: 213 AIGPQT-KLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271

Query: 342 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331

Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           +++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   Q  G G V SF + G +  +
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALS 390

Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
              ++  K   IA SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +D
Sbjct: 391 KHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDD 450

Query: 521 LKADVLQAL 529
           L +D+  A 
Sbjct: 451 LISDLDIAF 459

Length = 464

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  210 bits (535), Expect = 5e-63
 Identities = 127/373 (34%), Positives = 198/373 (53%), Gaps = 32/373 (8%)

Query: 161 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 220
           T A+ TP+       F  T +  +F   +   F+Y R  NPT   +EE ++A+E A+  +
Sbjct: 22  TGALVTPL------HFSTTYQHPEFG--QSTGFDYTRTKNPTRAKLEETLAAIESADYAL 73

Query: 221 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVIDPADMEGL 279
             +SGMSA  V+  ++ P G  +V   D Y  + R F +    K G         + E +
Sbjct: 74  ATSSGMSA-IVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQ--EKEGRFHFTYANTEEELI 130

Query: 280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 339
            A     +  + + E+PTNP +   D++ V+ L H KGA V +D TF +P+ Q+ + LGA
Sbjct: 131 AAI--EEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGA 188

Query: 340 DLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 398
           D+VLHSATK++ GHNDVLAG  ++   +L  ++    +  G  L+P  +YL++RG+KTL 
Sbjct: 189 DIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS 248

Query: 399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT 458
           LR+++  + A  +   L+  P VK V Y G                 GG++SF+V  D T
Sbjct: 249 LRMERSTANAQEVVAFLKKSPAVKEVLYTGK----------------GGMISFKV-ADET 291

Query: 459 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 518
                +++LK+   A S GG ES++  P   ++ D+    R  YG+ D+L+R S G+ED 
Sbjct: 292 RIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDA 351

Query: 519 EDLKADVLQALHA 531
            DL AD+ QAL  
Sbjct: 352 RDLIADLKQALEG 364

Length = 364

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  207 bits (528), Expect = 4e-61
 Identities = 133/430 (30%), Positives = 204/430 (47%), Gaps = 55/430 (12%)

Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYGNPT 202
           +IHAG+ +     T A   P+  T++Y F  +AE      K+R + E     Y R  NPT
Sbjct: 18  SIHAGQSVDSD--TSARNLPIYQTTSYVFD-SAE----HAKQRFALEDLGPIYSRLTNPT 70

Query: 203 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 262
              +E ++++LEG    V  ASG +A T  +L L  AG HIVT+   Y  T       L 
Sbjct: 71  VEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN 130

Query: 263 KMGITAT-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 321
           ++GI  T V +P D E  +AA+  N  + FF E+  NP    +D+  V+++ H+    + 
Sbjct: 131 RLGIEVTFVENPDDPESWQAAVQPNTKA-FFGETFANPQADVLDIPAVAEVAHRNQVPLI 189

Query: 322 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGG 380
           +D T AT    + L LGAD+V+ S TKF  G+   L G +   GK   T  R+   V   
Sbjct: 190 VDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPY 249

Query: 381 ALNPNAAY-----------------------------------LIIRGMKTLHLRVQQQN 405
            + P+ AY                                   +  +G+ TL LR+++ N
Sbjct: 250 FVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHN 309

Query: 406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF---GGVVSFEVDGDLTATIK 462
             A+++A+ L  H KV +V++ GLK  P +  AT++  G    G V+SF++ G       
Sbjct: 310 ENAIKVAEFLNNHEKVAKVNFAGLKDSPWY--ATKEKLGLKYTGSVLSFDIKGGKDEAWA 367

Query: 463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLK 522
           FIDALK+     + G   S+V  PA  ++    ++   + GI    VR S G+ED +D+ 
Sbjct: 368 FIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGIEDIDDII 427

Query: 523 ADVLQALHAI 532
           AD+     AI
Sbjct: 428 ADLEGGFAAI 437

Length = 437

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  204 bits (521), Expect = 1e-60
 Identities = 115/371 (30%), Positives = 188/371 (50%), Gaps = 21/371 (5%)

Query: 164 ITTPVVNTSAYFFKKTAELIDFKEKRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVI 221
           I  PV   S   F   AE+     K RA+ E  YGR G PT    +  +  LEG   T +
Sbjct: 23  INPPVFRASTVVFDTVAEM-RHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81

Query: 222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 281
             SG +A +  LL+ + AG H++    CY  TR   + +L   GI  T  DP   EG+  
Sbjct: 82  YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRE 141

Query: 282 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 341
            L   N  + F ESP +  +   DV  +S + H+   +V +D T+A+P+N +   +G D+
Sbjct: 142 -LIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDI 200

Query: 342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRV 401
            + +ATK+I GH+DV+ G+ + + K   Q+R   +++G   +P+  YL +RG++TL +R+
Sbjct: 201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRL 260

Query: 402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV-DGDLTAT 460
            Q    AL++A  L   P+V  V +P  ++ P H    +  +G  G+ SF +  GD  A 
Sbjct: 261 AQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAV 320

Query: 461 IKFIDALKIPYIAPSFGGCESI------VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 514
              ++ ++   +  S+GG ES+      +++    + WD S+           L+R   G
Sbjct: 321 TALVEGMQHFKMGFSWGGFESLILGVFGINKLRTATNWDFSKP----------LIRLHIG 370

Query: 515 VEDFEDLKADV 525
           +ED +DL AD+
Sbjct: 371 LEDVDDLIADL 381

Length = 394

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  194 bits (494), Expect = 2e-56
 Identities = 126/426 (29%), Positives = 206/426 (48%), Gaps = 47/426 (11%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFE--YGRYGN 200
           +LA+HAG +      T A  TP+  T+++ F      A L   +      F   Y R  N
Sbjct: 10  TLAVHAGAQ--PDPTTGARATPIYQTTSFVFNDADHAASLFGLQA-----FGNIYTRITN 62

Query: 201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 260
           PT  V+EE+++ALEG  + + +ASG +A  ++   L+  G   +     Y  +       
Sbjct: 63  PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHA 122

Query: 261 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 320
               G      D  D    E A+     ++F  ES  NP     D+  ++++ H+ G  +
Sbjct: 123 FKSFGWQVRWADADDPASFERAITPRTKAIFI-ESIANPGGTVTDIAAIAEVAHRAGLPL 181

Query: 321 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK--LVTQ 370
            +D T A+P   + +  GAD+V+HS TKF+GGH + + G I        S SGK  ++++
Sbjct: 182 IVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSE 241

Query: 371 IRNLHHV-----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNST 407
            R  +H                        LG A++P  A+LI+ G++TL LR+Q+ +  
Sbjct: 242 PRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDN 301

Query: 408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDA 466
           AL +A+ L+ HPKV  V+Y GL   P H +A +    G G V +F + G   A +K + +
Sbjct: 302 ALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSS 361

Query: 467 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL 526
           LK+     + G   S+V  PA  ++  L+  +++  G   ++VR S G+ED +D+ AD+ 
Sbjct: 362 LKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIEDVDDIIADLE 421

Query: 527 QALHAI 532
           QAL   
Sbjct: 422 QALAKA 427

Length = 427

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  192 bits (490), Expect = 4e-56
 Identities = 103/374 (27%), Positives = 181/374 (48%), Gaps = 10/374 (2%)

Query: 162 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 221
            +  TPV   S   F   A +     ++   + YG +  PT++ + ++++ +EG    ++
Sbjct: 26  RSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALL 85

Query: 222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 281
             SG++A +++   LV AG  ++   + Y   R   E +    GIT    DP    G+ A
Sbjct: 86  QPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGI-A 144

Query: 282 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 341
            L   N  L + E+P +  +   DV  ++     +G +  ID T++  L  K    G D+
Sbjct: 145 DLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDI 204

Query: 342 VLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 400
            + + TK+  G +DVL G+ I+   +L  +++     LG  ++ +   L++RG+ +L +R
Sbjct: 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVR 264

Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA- 459
           +   + +AL +A+ L+A P++  V +P L   P H    +  TG GG+ S   D   +  
Sbjct: 265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPA 324

Query: 460 -TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 518
               F++AL++  I  S+GG  S+      M Y D++     K+     LVR   G+ED 
Sbjct: 325 QVDAFVEALELFAIGWSWGGACSLA-----MPY-DVASMRTAKWPHRGTLVRLYIGLEDE 378

Query: 519 EDLKADVLQALHAI 532
            DL AD+ QAL A 
Sbjct: 379 ADLIADLEQALEAA 392

Length = 394

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  190 bits (484), Expect = 5e-55
 Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 16/337 (4%)

Query: 190 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 249
           R  + Y R+ NPT + +  +M+ALEG E+    ASGMSA + +LL L  +GGH+V +   
Sbjct: 65  RDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTL 124

Query: 250 YRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKL 308
           Y  T   +   LP K  IT T +D  D+E ++ A+      + + ES +NP L   D+  
Sbjct: 125 YGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPE 184

Query: 309 VSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 368
           ++ + H+KG  V +D TFA P+      LGAD+V+HS +KFI G  D++AG++ G  +LV
Sbjct: 185 LARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELV 243

Query: 369 TQIRNLHH----VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 424
             + +LHH    +LG  +NP  A+ +   +  L LR+++    A+  AK ++      +V
Sbjct: 244 NSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKV 301

Query: 425 HYPGLKSHPEHHIATQQMT---GFGGVVSFEVDGDLTATIKFIDAL----KIPYIAPSFG 477
            YPGL+ HP+H +         GFGG++  ++D +  A  + +  L    +  ++A S G
Sbjct: 302 IYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERAN-RLMRYLQNSTQFGFMAVSLG 360

Query: 478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 514
             E+++      +  +L   E+   GI   LVR S G
Sbjct: 361 YYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG 397

Length = 418

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  168 bits (427), Expect = 1e-46
 Identities = 113/396 (28%), Positives = 187/396 (47%), Gaps = 33/396 (8%)

Query: 167 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 226
           P+  ++ Y +  + +L          + Y R GNPT    E+K++ LEG    V  ASG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 227 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 286
           +A  + +L +  +G H++ ++  Y  T       L K+GI  T  +P        AL N+
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 287 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 346
              L + ES  NP +  ++ K  SD   +      +D T ATP   +A   GA++++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 347 TKFIGGHNDVLAGSISGSG----------KLVTQIRNLHHV------------------- 377
           TK+I GH   L G +   G          +LV    + H V                   
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 378 ---LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 434
               G  ++P  AY+   G++TLHLR+++ +  AL +AK L  H +++ V+YPGL S+  
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326

Query: 435 HHIATQQMT-GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD 493
           + +A + +  G  GV++F + G L A  +FI  +K+  +        + V  PA  ++  
Sbjct: 327 YSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQ 386

Query: 494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
           LS  ++   G+  +L+R S G+ED  D+ AD+  AL
Sbjct: 387 LSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAAL 422

Length = 432

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  164 bits (417), Expect = 1e-45
 Identities = 106/350 (30%), Positives = 175/350 (50%), Gaps = 23/350 (6%)

Query: 188 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 245
           + RA+ E  YGR G  T   ++E M  LEG     +   G +A    +LA V  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLM 106

Query: 246 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 305
           T   Y  T+ F   +L K+G+T T  DP     + A L   N  + F ESP +  +   D
Sbjct: 107 TGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI-AKLIQPNTKVVFLESPGSITMEVHD 165

Query: 306 VKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 363
           V  +          A++ ID T+A  +  KAL  G D+ + + TK++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVA 225

Query: 364 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 423
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q   ++L++A+ L  HP+V R
Sbjct: 226 NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVAR 285

Query: 424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCES 481
           V++P L     H    +  TG  G+ SF +   LT      ++D   +  +A S+GG ES
Sbjct: 286 VNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFES 345

Query: 482 IVDQPAIMSYWDLSQSERLK----YGIMD---NLVRFSFGVEDFEDLKAD 524
           +     I++     Q E +      G +D    L+R   G+ED +DL AD
Sbjct: 346 L-----ILAN----QPEEIAAIRPAGEVDFTGTLIRLHIGLEDVDDLIAD 386

Length = 395

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 24/162 (14%)

Query: 278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----Q 332
             E A+N N   L    S    F   +  + + ++ H+KG  V +D      ++     +
Sbjct: 148 DYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLR 207

Query: 333 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----------------LHH 376
           +AL+LGADLV  S  K +GG     AG I G  +L+ ++++                L  
Sbjct: 208 EALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEA 264

Query: 377 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 418
            L   L P      +R ++ L    +   + A R+A +    
Sbjct: 265 ALELYLQPEILGERLRTLRLLTQPAEALLAQAGRLAVVELDP 306

Length = 395

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 207 EEKMSALEGAESTVIMASGMSAST-VMLLALVPAGGHIVTTTDCYRK----------TRI 255
           +E  +   GA+ T  + +G S+S   ++LA+   G  I+   +C++             +
Sbjct: 65  QELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPV 124

Query: 256 FIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 314
           +++    P  GI A  I P   +  +A + + +       +PT  +  C +++ + +  H
Sbjct: 125 YLKPERNPYYGI-AGGIPPETFK--KALIEHPDAKAAVITNPT-YYGICYNLRKIVEEAH 180

Query: 315 KKGAIVCID---GT---FATPLNQKALSLGADLVLHSATKFIGG 352
            +G  V +D   G    F   L   A   GAD+V+ S  K +  
Sbjct: 181 HRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA 224

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 207 EEKMSAL--EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
           EEK++ L   G +  V + SG  A+   LLAL+  G  ++   + +  +R ++   L   
Sbjct: 6   EEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGH-GSRYWVAAELAGA 64

Query: 265 GITATVIDPADMEG-----LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI 319
                 +D A   G     LE      NV+L      T      V +K +  +  + G +
Sbjct: 65  KPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGIL 124

Query: 320 VCIDGTFATPLNQKALSL----GADLVLHSATKFIGG 352
           + +D   A   +     L    GAD+V  S  K +GG
Sbjct: 125 LLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG 161

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 36/172 (20%)

Query: 280 EAALNNNNVSLFFTESPTNP----FLRCVDVKLVSDLCHKKGAIV--------CID---- 323
           E A+N N   L    + +N     F + V +  +  L  + G  V         +D    
Sbjct: 130 EQAINENTALLMKVHT-SNYRIQGFTKEVSLAELVALGKEHGLPVYYDLGSGSLVDLSQY 188

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---------- 373
           G    P  Q+ L+LG DLV  S  K +GG     AG I G  +L+ +++           
Sbjct: 189 GLPKEPTVQELLALGVDLVSFSGDKLLGG---PQAGIIVGKKELIERLKKNPLKRALRVD 245

Query: 374 ------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 419
                 L   L   LNP   Y  I  ++ L   +++  + A R+ K+L+A  
Sbjct: 246 KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKARL 297

Length = 367

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 39/253 (15%)

Query: 195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 254
           YG  G+PT   +E++++ L G E+ + + SG  A+ + L+A    G  ++    C     
Sbjct: 28  YG--GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVI----CGEPAH 81

Query: 255 IFI-ETVLPKM--GITATVIDPA-----DMEGLEAAL------NNNNVSLFFTESPTNPF 300
           I+  ET       G     +  A     D+E LEAA+      +     L   E+  N  
Sbjct: 82  IYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSA 141

Query: 301 L-RCV---DVKLVSDLCHKKGAIVCIDGT-F---ATPLNQ--KALSLGADLVLHSATKFI 350
             + V   +++ +  +  + G  + +DG      A  L    K ++  AD V  S +K +
Sbjct: 142 GGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGL 201

Query: 351 GGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL---RVQQQNS 406
           G       GS+ +GS   +   R     LGG +   A  L   G++ L     R+ + ++
Sbjct: 202 G----APVGSVLAGSDDFIAYARRQRKYLGGGMR-QAGVLAAAGLRALEEGVARLGRDHA 256

Query: 407 TALRMAKILEAHP 419
           TA R+A+ LE   
Sbjct: 257 TARRLAEGLELLR 269

Length = 288

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 66/362 (18%), Positives = 120/362 (33%), Gaps = 68/362 (18%)

Query: 208 EKMSALEGAEST--VIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVL 261
           E ++    A+S+  ++   G + +  ++       +  G  IV +   +    +  + + 
Sbjct: 73  EAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELA 132

Query: 262 PKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK 316
            + G    VI        D++ LE  +      +  +   +N       VK +++L H+ 
Sbjct: 133 KRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALS-HVSNVTGTVNPVKEIAELAHEH 191

Query: 317 GAIVCIDGTFATPLNQKALS-LGADLVLHSATKFIGG---------HNDVLAGS--ISGS 364
           GA+V +D   A       +  LG D +  S  K++ G           ++L       G 
Sbjct: 192 GALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGG 251

Query: 365 GKLVTQIRNLHHV---------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 415
           G ++  +     V           G  N   A  +   +  L           + M  I 
Sbjct: 252 GGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL---------EIGMEAI- 301

Query: 416 EAHPKVKRVH-YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI-KFIDALKIPYIA 473
           EAH +    +   GL   P   I        GG+VSF V G     +   +D   I    
Sbjct: 302 EAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGI--AV 359

Query: 474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQAL 529
            +   C     QP              +   +D  +R S  +    ED + L  + L+  
Sbjct: 360 RAGHHC----AQPL------------HRLLGVDATIRASLHLYNTEEDVDRL-LEALKKA 402

Query: 530 HA 531
            A
Sbjct: 403 LA 404

Length = 405

>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTF-------ATPLNQ 332
           LNN N  L F  SP NP    +       +S++C KKGA++ ID  F       A     
Sbjct: 118 LNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVL 177

Query: 333 KALSLGADLVLHSATKFIG 351
              S G  ++  S TK +G
Sbjct: 178 LNRSYGNVIIGRSLTKILG 196

Length = 332

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 206 VEEKMSALEGAEST--VIMASGMSAS--TVM--LLALVPAGGHIVTTTDCYRKTRIFIET 259
             EK++    A S   +I  SG + +   V   L   +  G  I+ T   +    +  + 
Sbjct: 48  AREKVAEFINAPSDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQE 107

Query: 260 VLPKMGITATVI--DPA---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 314
           +  + G T  VI  DP    D++ LE  L      +  T   +N       V+ +  L H
Sbjct: 108 LAKRTGATVRVIPVDPNGLLDLDALEKLLTPRTKLVAITHV-SNVTGTVNPVEEIGKLAH 166

Query: 315 KKGAIVCIDGTFA---TPLNQKALSLGADLVLHSATKFIG 351
           + GA+V +D   A    P++ +A  LG D +  S  K  G
Sbjct: 167 EYGALVVVDAAQAVGHRPIDVQA--LGVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	532
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.96
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
PRK05957	389	aspartate aminotransferase; Provisional	99.94
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.94
PRK06207	405	aspartate aminotransferase; Provisional	99.94
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.94
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.94
PRK07324	373	transaminase; Validated	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.94
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.94
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.93
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.93
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.93
PLN02721	353	threonine aldolase	99.93
PRK07179	407	hypothetical protein; Provisional	99.93
PRK07681	399	aspartate aminotransferase; Provisional	99.93
PLN02651	364	cysteine desulfurase	99.93
PRK06225	380	aspartate aminotransferase; Provisional	99.93
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.93
PRK02948	381	cysteine desulfurase; Provisional	99.93
PRK06290	410	aspartate aminotransferase; Provisional	99.93
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.93
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.93
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.93
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.93
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.93
PRK08960	387	hypothetical protein; Provisional	99.93
PRK06348	384	aspartate aminotransferase; Provisional	99.93
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.93
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.93
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.93
PRK06108	382	aspartate aminotransferase; Provisional	99.93
PRK05764	393	aspartate aminotransferase; Provisional	99.93
PRK07682	378	hypothetical protein; Validated	99.93
PRK08361	391	aspartate aminotransferase; Provisional	99.93
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.93
PLN02187	462	rooty/superroot1	99.93
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.92
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.92
PRK05942	394	aspartate aminotransferase; Provisional	99.92
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.92
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.92
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.92
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.92
PRK12414	384	putative aminotransferase; Provisional	99.92
PRK07337	388	aminotransferase; Validated	99.92
PTZ00433	412	tyrosine aminotransferase; Provisional	99.92
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.92
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.92
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.92
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.92
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.92
PRK08068	389	transaminase; Reviewed	99.92
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.92
PLN02483	489	serine palmitoyltransferase	99.92
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.92
PRK07550	386	hypothetical protein; Provisional	99.92
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.92
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.92
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.92
PLN00175	413	aminotransferase family protein; Provisional	99.92
PLN02656	409	tyrosine transaminase	99.92
PRK04311	464	selenocysteine synthase; Provisional	99.92
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.92
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.92
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.91
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.91
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.91
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.91
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.91
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.91
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.91
PRK08912	387	hypothetical protein; Provisional	99.91
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.91
PRK13392	410	5-aminolevulinate synthase; Provisional	99.91
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.91
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.91
PRK07777	387	aminotransferase; Validated	99.91
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.91
PRK07683	387	aminotransferase A; Validated	99.91
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.91
PRK09148	405	aminotransferase; Validated	99.91
PRK09265	404	aminotransferase AlaT; Validated	99.91
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.91
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.91
PRK09082	386	methionine aminotransferase; Validated	99.91
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.91
PRK07568	397	aspartate aminotransferase; Provisional	99.91
PRK03321	352	putative aminotransferase; Provisional	99.9
PRK09105	370	putative aminotransferase; Provisional	99.9
PRK08363	398	alanine aminotransferase; Validated	99.9
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.9
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.9
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.9
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.9
PRK08175	395	aminotransferase; Validated	99.9
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.9
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.9
PRK13393	406	5-aminolevulinate synthase; Provisional	99.9
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.9
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.9
PRK06107	402	aspartate aminotransferase; Provisional	99.9
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.9
PRK14012	404	cysteine desulfurase; Provisional	99.9
PRK08636	403	aspartate aminotransferase; Provisional	99.9
PTZ00377	481	alanine aminotransferase; Provisional	99.9
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.9
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.9
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.9
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.89
PRK09064	407	5-aminolevulinate synthase; Validated	99.89
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.89
PLN02822	481	serine palmitoyltransferase	99.89
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.89
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.89
PRK06836	394	aspartate aminotransferase; Provisional	99.89
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.89
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.89
PRK10534	333	L-threonine aldolase; Provisional	99.89
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.89
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.89
PRK07908	349	hypothetical protein; Provisional	99.89
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.88
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.88
PRK05839	374	hypothetical protein; Provisional	99.88
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.88
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.88
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.88
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.88
PRK06855	433	aminotransferase; Validated	99.88
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.88
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.87
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.87
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.87
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.87
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.87
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.87
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.87
PLN02409	401	serine--glyoxylate aminotransaminase	99.87
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.87
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.87
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.87
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.87
PRK08354	311	putative aminotransferase; Provisional	99.87
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.86
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.86
PLN02955	476	8-amino-7-oxononanoate synthase	99.86
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.86
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.86
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.86
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.86
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.86
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.85
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.85
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.85
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.85
PLN02231	534	alanine transaminase	99.85
PLN02724	805	Molybdenum cofactor sulfurase	99.84
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.84
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.84
PLN02368	407	alanine transaminase	99.84
PTZ00376	404	aspartate aminotransferase; Provisional	99.84
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.84
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.83
PLN02672	1082	methionine S-methyltransferase	99.83
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.83
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.82
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.82
PRK09275	527	aspartate aminotransferase; Provisional	99.82
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.82
PRK08637	388	hypothetical protein; Provisional	99.81
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.81
PRK02627	396	acetylornithine aminotransferase; Provisional	99.81
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.81
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.81
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.8
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.8
PRK07505	402	hypothetical protein; Provisional	99.8
PLN02397	423	aspartate transaminase	99.79
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.78
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.78
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.77
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.77
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.77
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.77
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.77
PLN03032	374	serine decarboxylase; Provisional	99.76
PRK02769	380	histidine decarboxylase; Provisional	99.76
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.76
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.76
PLN02624	474	ornithine-delta-aminotransferase	99.76
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.74
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.74
PLN00144	382	acetylornithine transaminase	99.73
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.73
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.73
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.73
PRK03080	378	phosphoserine aminotransferase; Provisional	99.72
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.72
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.71
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.71
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.71
PRK04260	375	acetylornithine aminotransferase; Provisional	99.7
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.69
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.69
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.69
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.69
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.68
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.68
PLN02271	586	serine hydroxymethyltransferase	99.68
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.67
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.67
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.67
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.66
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.66
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.66
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.65
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.64
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.64
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.64
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.63
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.62
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.62
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.61
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.61
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.6
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.6
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.6
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.6
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.6
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.6
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.59
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.58
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.58
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.58
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.58
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.57
PRK05965	459	hypothetical protein; Provisional	99.57
PRK12403	460	putative aminotransferase; Provisional	99.57
PRK06105	460	aminotransferase; Provisional	99.57
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.56
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.56
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.56
PRK13237	460	tyrosine phenol-lyase; Provisional	99.56
PRK07046	453	aminotransferase; Validated	99.56
PRK15029	755	arginine decarboxylase; Provisional	99.56
PRK05367	954	glycine dehydrogenase; Provisional	99.56
PLN02880	490	tyrosine decarboxylase	99.55
PRK07678	451	aminotransferase; Validated	99.55
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.55
PRK07482	461	hypothetical protein; Provisional	99.55
PRK05367	954	glycine dehydrogenase; Provisional	99.54
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.54
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.54
PLN02590	539	probable tyrosine decarboxylase	99.53
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.53
PRK06541	460	hypothetical protein; Provisional	99.53
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.52
PRK06062	451	hypothetical protein; Provisional	99.52
PRK07481	449	hypothetical protein; Provisional	99.52
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.51
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.51
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.51
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.51
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.51
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.5
PRK13578	720	ornithine decarboxylase; Provisional	99.5
PLN02263	470	serine decarboxylase	99.49
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.49
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.49
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.49
COG4100	416	Cystathionine beta-lyase family protein involved i	99.49
PRK07480	456	putative aminotransferase; Validated	99.49
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.49
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.49
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.48
PRK07036	466	hypothetical protein; Provisional	99.47
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.47
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.47
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.47
PRK06149	972	hypothetical protein; Provisional	99.46
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.46
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.46
PRK12566	954	glycine dehydrogenase; Provisional	99.45
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.45
PRK07483	443	hypothetical protein; Provisional	99.43
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.43
PRK06148	1013	hypothetical protein; Provisional	99.42
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.42
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.42
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.4
PRK15400	714	lysine decarboxylase CadA; Provisional	99.4
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.39
PRK06917	447	hypothetical protein; Provisional	99.39
PRK08297	443	L-lysine aminotransferase; Provisional	99.38
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.37
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.35
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.35
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.34
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.32
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.32
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.32
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.31
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.31
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.28
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.26
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.26
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.24
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.22
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.22
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.2
PLN02452	365	phosphoserine transaminase	99.2
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.2
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.18
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.01
PRK12462	364	phosphoserine aminotransferase; Provisional	98.98
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.98
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.89
PRK12566	954	glycine dehydrogenase; Provisional	98.87
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.81
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	98.73
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.66
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.55
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.55
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.51
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.12
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.0
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.74
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.7
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.6
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.42
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.33
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.28
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.07
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	96.24
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	96.09
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	93.89
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	87.1
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	82.27

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-80  Score=640.01  Aligned_cols=387  Identities=43%  Similarity=0.708  Sum_probs=364.2

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      ++.|+++|.|...+  ..+++++||||+||||.|++.++..+.+.+...+|.|+|++||+++.||+++++++|++.++.|
T Consensus         7 ~~~T~~v~~g~~~~--~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af   84 (396)
T COG0626           7 SLTTRLVHAGRRPD--DLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF   84 (396)
T ss_pred             ccceeeEEcccccc--cCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence            57899999997663  4589999999999999999998776666666778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+||.+++.+++++||+|++++..|++++.++...++++|+++.++|..+.+++++++.+.+|++||+|+|+||+..
T Consensus        85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~  164 (396)
T COG0626          85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE  164 (396)
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999988888887777436999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhh-hcCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHH-VLGG  380 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~-~~G~  380 (532)
                      +.|+++|+++|+++|+++||||||++|+.++|+++|+|||++|+|||++||+|+++|+++++. ++.+.+....+ .+|.
T Consensus       165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~  244 (396)
T COG0626         165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA  244 (396)
T ss_pred             cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999888665 55566555444 5999


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      .++|+++|+++|+++|+..||+++++|++.+++||++||.|++|+||++++||+|++++||++|+|+|++|+|+++ +++
T Consensus       245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~-~~~  323 (396)
T COG0626         245 VLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE-EAA  323 (396)
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh-HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 889


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      .+|+++|+++.+++||||++|++++|+.|+|..++.+.|.+.|+++++||||||+||++|||+||++||+++
T Consensus       324 ~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         324 KKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA  395 (396)
T ss_pred             HHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999864

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=2.5e-77  Score=626.00  Aligned_cols=383  Identities=45%  Similarity=0.772  Sum_probs=343.0

Q ss_pred             cccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 009523          145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  224 (532)
Q Consensus       145 ~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sS  224 (532)
                      +|++||+|...++ ..+++++||||+|+||.|++.+++ +.+.+...+|.|+|++||+...||++||+++|++.+++++|
T Consensus         1 ~T~~vh~g~~~~~-~~~~~v~~pi~~sstf~~~~~~~~-~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~S   78 (386)
T PF01053_consen    1 ETLLVHAGRDPDE-DQTGAVNPPIYQSSTFVFDSAEEL-DAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSS   78 (386)
T ss_dssp             HHHHHHTTTTGGT-STTTBSS--B---SBBBBSSHHHH-HHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESS
T ss_pred             CcceEeCCCCCCC-CCCCCeeCCccccccCcccchHHH-HhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccc
Confidence            4889999987642 358999999999999999999998 77777788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc
Q 009523          225 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  304 (532)
Q Consensus       225 G~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~  304 (532)
                      ||+|+.+++.+++++||+|++++..|++++.+++..+.++|+++.++|..|+++|++++++ +|++||+|+|+||++.+.
T Consensus        79 GmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~  157 (386)
T PF01053_consen   79 GMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVP  157 (386)
T ss_dssp             HHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB--
T ss_pred             hHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccc
Confidence            9999999999999999999999999999999999889999999999999999999999998 799999999999999999


Q ss_pred             CHHHHHHHHHhCC-CEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh--HHHHHHHHHhhhcCCC
Q 009523          305 DVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHVLGGA  381 (532)
Q Consensus       305 dl~~I~~la~~~g-i~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~--~li~~l~~~~~~~G~~  381 (532)
                      |+++|+++||++| ++++||+|+++++.++|+.+|+|++++|+|||++||+|+++|+++.++  ++.++++.....+|..
T Consensus       158 Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~  237 (386)
T PF01053_consen  158 DLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGAT  237 (386)
T ss_dssp             -HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B
T ss_pred             cHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCcc
Confidence            9999999999998 999999999999999999999999999999999999999999999765  7888899888999999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++|+++|+++++++|+..||+++.+|+++++++|++||.|.+|+||++++||+|+++++|++|+|+|++|+++++.+.+.
T Consensus       238 ~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~  317 (386)
T PF01053_consen  238 LSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAAR  317 (386)
T ss_dssp             --HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHH
T ss_pred             chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997656899


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +|+++|+++.+++|||+++|++++|+.++|..+++++++..|+++++||||+|+||++|||+||++||+
T Consensus       318 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  318 RFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE  386 (386)
T ss_dssp             HHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred             hHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999996

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-77  Score=596.32  Aligned_cols=386  Identities=38%  Similarity=0.623  Sum_probs=365.8

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +|+|++||+|+. +  +.+++...|||+|++|.|++.++..+.|..+..+|.|+|..||+.+.||++||.++|+-.++.+
T Consensus         7 ~f~T~~vHag~~-d--~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~   83 (426)
T COG2873           7 GFETLAVHAGQE-D--PTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV   83 (426)
T ss_pred             CcchhhhcCCCC-C--CCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence            589999999987 3  4689999999999999999999999999988889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+..++..++++||+||.+...|++++.++...++++|++++++|.+|++++++++++ +||+||+|+..||-+.
T Consensus        84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~-nTkavf~EtigNP~~~  162 (426)
T COG2873          84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDE-NTKAVFAETIGNPGLD  162 (426)
T ss_pred             ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCc-ccceEEEEeccCCCcc
Confidence            999999999999999999999999999999999999899999999999999999999999998 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh--H--------------
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--K--------------  366 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~--~--------------  366 (532)
                      +.|+++|+++||++|+++|||+|+++++.++|+++|+|||++|+|||+||||..+||+++-..  +              
T Consensus       163 v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~  242 (426)
T COG2873         163 VLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD  242 (426)
T ss_pred             ccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999997311  0              


Q ss_pred             ----------------HHHHHH-HHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          367 ----------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       367 ----------------li~~l~-~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                                      ++-+.| ...+.+|.+++|+++|+.+.|++||.+||+|+++|+.++++||++||+|.+|+||+|
T Consensus       243 p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL  322 (426)
T COG2873         243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGL  322 (426)
T ss_pred             ccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCC
Confidence                            111222 345678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009523          430 KSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL  508 (532)
Q Consensus       430 ~s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~  508 (532)
                      ++||.|.++++++ +|.|++++|+++++.+...+|+++|+++....+.|++.|++.||++++|+.++++++.++|+++++
T Consensus       323 ~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~  402 (426)
T COG2873         323 ASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDL  402 (426)
T ss_pred             CCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCc
Confidence            9999999999999 789999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCHHHHHHHHHHHHhhC
Q 009523          509 VRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       509 IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      ||+|||+||++|+|+||+|||+++
T Consensus       403 IRlSVGIEd~~DiiaDl~qAl~~~  426 (426)
T COG2873         403 IRLSVGIEDIDDIIADLEQALEAA  426 (426)
T ss_pred             EEEEeccCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999863

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=3.6e-73  Score=595.78  Aligned_cols=383  Identities=27%  Similarity=0.457  Sum_probs=351.6

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhccc-CCCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      +++|+++|.|...  ...+++++||||+|+||.|++.+++.+.+.++. .+|.|+|.+||+++.||++||+++|++.+++
T Consensus         5 ~~~t~~~~~~~~~--~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~   82 (395)
T PRK08114          5 KLDTQLVNAGRSK--KYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCAL   82 (395)
T ss_pred             CcchheEeCCCCC--CCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence            3679999999532  223489999999999999999998887775443 4699999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      |+|||+|+++++.+++++||+||+++..|++++.+++..++++|+++.+++..|.+++++++++ +||+|++|+|+||+|
T Consensus        83 ~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~-~TrlV~~EtpsNp~~  161 (395)
T PRK08114         83 YPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQP-NTKVVFLESPGSITM  161 (395)
T ss_pred             EhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCC
Confidence            9999999999999999999999999999999999988888999999999999999999999987 799999999999999


Q ss_pred             cccCHHHHHHHHHhCC--CEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC
Q 009523          302 RCVDVKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  379 (532)
Q Consensus       302 ~v~dl~~I~~la~~~g--i~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G  379 (532)
                      .+.|+++|+++||++|  ++++||+||+.++.++|+++|+|++++|+|||++||+|+++|+++.++++++.++......|
T Consensus       162 ~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G  241 (395)
T PRK08114        162 EVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMG  241 (395)
T ss_pred             EeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhcc
Confidence            9999999999999984  99999999999988999999999999999999999999999999888888888887778889


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DL  457 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--~~  457 (532)
                      ..++|+++|+++|+++|+..||+++++|+..+++||++||.|.+|+||++++||+|+++++|++|+|+|++|++++  +.
T Consensus       242 ~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~  321 (395)
T PRK08114        242 QMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTD  321 (395)
T ss_pred             CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986  36


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccc--cCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVD--QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~--~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +++.+|+++|+++.+++|||+++|+++  +|..++|.. +++   ..|+.+++||||||+||++|||+||++||+++
T Consensus       322 ~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvGlEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        322 EQLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIGLEDVDDLIADLAAGFARI  394 (395)
T ss_pred             HHHHHHHHhCCcceeecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            789999999999999999999999999  555555544 333   45677799999999999999999999999864

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.5e-72  Score=590.97  Aligned_cols=379  Identities=32%  Similarity=0.531  Sum_probs=353.5

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|..++  ..+++++||||+|+||.|++..        +..+|.|+|++||+.+.|+++||+++|++.++++
T Consensus         5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~--------~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt   74 (388)
T PRK08861          5 KPATIAVRTGIESD--SQYHAVVPPIYLSTNYGFPAFG--------EVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVT   74 (388)
T ss_pred             CcccceeECCCCCC--CCCCCccCCcccCcceEeCCcC--------ccCCccccCCCCchHHHHHHHHHHHhCCCeEEEE
Confidence            47899999996543  2368999999999999998742        2347999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+.+++.+++++||+|+++.+.|++++..+...+...|+++.+++..|++++++++++ +|++|++|+|+||||.
T Consensus        75 ~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~-~tklV~lesP~NPtG~  153 (388)
T PRK08861         75 NCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVR  153 (388)
T ss_pred             CCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999998887776666677899999998899999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|.++|+++|+++|+|++|+.++.+.|+++|+|++++|+|||++||+|+++|+++++ +++.++++.++...|..
T Consensus       154 v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~  233 (388)
T PRK08861        154 VVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGAT  233 (388)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999888889999999999999999999999999999875 56778888888888999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++|+++|+++++++|+..||+++++|+.++++||++||.|.+|+||++++||+|+++++|++|+|+|++|+++++.+.+.
T Consensus       234 ~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~  313 (388)
T PRK08861        234 GTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLK  313 (388)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987678889


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +|+++|+++.+++|||+++|++++|+.++|+.+++++++..|+++++||||||+||++|||+||++||+++
T Consensus       314 ~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~~~dli~Dl~~al~~~  384 (388)
T PRK08861        314 VFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAFAKA  384 (388)
T ss_pred             HHHhcCCcceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999853

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-72  Score=575.71  Aligned_cols=389  Identities=43%  Similarity=0.658  Sum_probs=363.4

Q ss_pred             ccCCCccccccccCCcCCCCCCCCcccCCcccccccccCCh-HHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCC
Q 009523          139 SFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAE  217 (532)
Q Consensus       139 ~~~~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~-~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~  217 (532)
                      ++..+++|.++|+|+.+++. ..++++||||.++++.|... .+.+...+.  .+|.|+|.+||+...|++.+++++|++
T Consensus        17 ~~~~~~~t~~~~~g~~~~~~-~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~--~~~~Ysr~~nPt~~~le~~iaal~ga~   93 (409)
T KOG0053|consen   17 SRLSHLDTNLLHAGQDPEKA-IHNAVAPPIYATLSTTFKQDLNEGEHGGNL--DGYDYSRSGNPTRDVLESGIAALEGAA   93 (409)
T ss_pred             hhccccchhhhhcccccchh-ccccccCceecccceeecccCccccccccc--cccccccCCCCchHHHHHHHHHHhCCc
Confidence            34467999999999887543 57899999998888888765 332222211  269999999999999999999999999


Q ss_pred             cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCC
Q 009523          218 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT  297 (532)
Q Consensus       218 ~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~  297 (532)
                      .+++++|||.|+..++..++++|++|++.+..|++|..+++..++++|++..++|.+|++.+++++++ +|++||+|+|+
T Consensus        94 ~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPs  172 (409)
T KOG0053|consen   94 HALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPS  172 (409)
T ss_pred             eEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhcc-CceEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 79999999999


Q ss_pred             CCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhh
Q 009523          298 NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH  376 (532)
Q Consensus       298 NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~  376 (532)
                      ||++.+.||++|+++||++|+++|||+||++++.++|+.+|||||++|+|||++||+|+++|+++.+ +++..+++..+.
T Consensus       173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~  252 (409)
T KOG0053|consen  173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE  252 (409)
T ss_pred             CCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999996 789999999999


Q ss_pred             hcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC
Q 009523          377 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD  456 (532)
Q Consensus       377 ~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~  456 (532)
                      ..|++++|+.+|+..|+++|+..|++++.+|+..++++|+++|.+++|+||+|++||+|++++++++|.+|.++|.+.++
T Consensus       253 ~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~  332 (409)
T KOG0053|consen  253 DLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGN  332 (409)
T ss_pred             HhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777788888888


Q ss_pred             HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          457 LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       457 ~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      .+.+.+|+++|+++..++|+|+++||+++|+.|+|+. +.+++.+.|+++++||+|||+||.+|+|+||.+||+++
T Consensus       333 ~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVGiEd~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  333 EEHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVGIEDIEDLIKDFQQALEKA  407 (409)
T ss_pred             HHHHHHHHHhhhhhhcccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEeccCCHHHHHHHHHHHHHhh
Confidence            8899999999999999999999999999999999999 99999999999999999999999999999999999863

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.4e-71  Score=590.11  Aligned_cols=383  Identities=30%  Similarity=0.514  Sum_probs=354.3

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...  .. +++++||||+|+||.|++.+++...++....+|.|+|.+||+++.||+.+|+++|++.+++++
T Consensus         7 ~~t~~~~~g~~~--~~-~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~   83 (432)
T PRK06702          7 KGTICVQGGYTP--KN-GEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATA   83 (432)
T ss_pred             cchHheeCCCCC--CC-CCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEEC
Confidence            689999999633  22 689999999999999999988877766555689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-CHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      |||+|+.+++.+++++||+||++.+.|+++..++...+..+|+++++++.. |+++++++|++ +||+|++|+|+||++.
T Consensus        84 SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~  162 (432)
T PRK06702         84 SGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND-KTKLVYAESLGNPAMN  162 (432)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCc-CCeEEEEEcCCCcccc
Confidence            999999999999999999999999999999988877778899999999984 89999999998 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChH----------H-----
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------L-----  367 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~----------l-----  367 (532)
                      +.|+++|+++|+++|+++|+|+||++|+.++|+++|+||+++|+|||++||+++++|+++....          +     
T Consensus       163 v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~  242 (432)
T PRK06702        163 VLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP  242 (432)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999884221          1     


Q ss_pred             ----------------HHHHH-HHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCC
Q 009523          368 ----------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK  430 (532)
Q Consensus       368 ----------------i~~l~-~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~  430 (532)
                                      +.+.+ .....+|.+++|+++|+++++++++..|++++.+|+.+++++|+++|.|.+|+||+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~  322 (432)
T PRK06702        243 SYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLD  322 (432)
T ss_pred             cccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence                            11122 3455678999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009523          431 SHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV  509 (532)
Q Consensus       431 s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~I  509 (532)
                      +||+|+++++|| +|+|+|++|+++++.+.+.+|+++|+++.+++|||+++|++.+|+.++|..+++++++..|+++++|
T Consensus       323 ~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~li  402 (432)
T PRK06702        323 SNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLI  402 (432)
T ss_pred             CCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeE
Confidence            999999999999 7899999999987778889999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCHHHHHHHHHHHHh
Q 009523          510 RFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       510 RlSvG~ed~~dli~dL~~AL~  530 (532)
                      |||||+||++|||+||+|||+
T Consensus       403 RlSvGlEd~eDLi~Dl~~Al~  423 (432)
T PRK06702        403 RLSVGIEDVSDIIADLEAALV  423 (432)
T ss_pred             EEEeccCCHHHHHHHHHHHHh
Confidence            999999999999999999996

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.9e-71  Score=582.74  Aligned_cols=382  Identities=29%  Similarity=0.521  Sum_probs=350.3

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhccc-CCCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      +++|+++|.|...  ...+++++||||+|+||.|++.+++.+.+.+.. .+|.|+|++||+...||++||++++++++++
T Consensus         4 ~~~t~~~~~~~~~--~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~   81 (394)
T PRK09028          4 KKATKIVSAGRDK--KWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL   81 (394)
T ss_pred             CccceeEEcCCCC--CCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            3679999999433  223489999999999999999988776554332 4589999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      ++|||+|+..++.+++++||+||++++.|+++..++...++++|+++.+++..+.+++++++++ +||+|++|+|+||+|
T Consensus        82 ~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~-~TklV~lespsNPtg  160 (394)
T PRK09028         82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRP-NTKVLFLESPGSITM  160 (394)
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCC
Confidence            9999999999999999999999999999999988777777889999999988888999999987 799999999999999


Q ss_pred             cccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC
Q 009523          302 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       302 ~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~  381 (532)
                      .+.|+++|+++||++|+++++|++|++++.++|+++|+|++++|+|||++||+|+++|+++.+++++++++......|.+
T Consensus       161 ~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~  240 (394)
T PRK09028        161 EVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQC  240 (394)
T ss_pred             cHHHHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999998899999999999999999999999999999988888888888777788999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc-CCHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD-GDLTAT  460 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~-g~~~~~  460 (532)
                      ++|+++|+++|+++|+..||+++++|++.+++||++||.|.+|+||++++||+|+++++|++|+|+|++|+++ ++.+.+
T Consensus       241 ~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~  320 (394)
T PRK09028        241 TSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAV  320 (394)
T ss_pred             CCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 456788


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .+|+++|+++.+++|||+++|++.+|++++|...    .+..|+.+++||||||+||++|||+||++||++
T Consensus       321 ~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svGlEd~~dLi~Dl~~Al~~  387 (394)
T PRK09028        321 TALVEGMQHFKMGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIGLEDVDDLIADLEAGFER  387 (394)
T ss_pred             HHHHHhCCcceEecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998876543    234788889999999999999999999999974

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.6e-70  Score=580.49  Aligned_cols=386  Identities=40%  Similarity=0.658  Sum_probs=362.0

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      ++.|+++|+|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+++.||++||+++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~   85 (398)
T PRK08249          8 GVGTKAVWAGEKEY--LPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAF   85 (398)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            36799999996542  2368999999999999999998777666555567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+|+++.+.|+++...+...++..|+++.+++..|++++++++++ +|++|++|+|+||+|.
T Consensus        86 ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~-~tklV~ie~p~NPtg~  164 (398)
T PRK08249         86 STGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAK-GCDLLYLETPTNPTLK  164 (398)
T ss_pred             CChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999999887777677888999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~  382 (532)
                      +.|+++|.++|+++|+++|+|++|+.++...++..++|++++|+||+++||++.++|+++++++++++++..+...|..+
T Consensus       165 v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~  244 (398)
T PRK08249        165 IVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM  244 (398)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999998877777888999999999999999999999999999999999988888889999


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +++.+|+++++++++..|++++.+|++.++++|+++|.|.+|+||++++||+|+++++|++|+|+|++|+++++.+.+.+
T Consensus       245 s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~  324 (398)
T PRK08249        245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKR  324 (398)
T ss_pred             CHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877778899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      |+++|+++.+++|||+++|++++|+.++|..++++.++..|+++++||||||+||++|||+||++||+.
T Consensus       325 f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  393 (398)
T PRK08249        325 LLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAFAH  393 (398)
T ss_pred             HHHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999975

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.6e-70  Score=576.24  Aligned_cols=376  Identities=32%  Similarity=0.545  Sum_probs=345.6

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++..    ...+|.|+|.+||+.+.|++.|+.+++++.+++++
T Consensus        13 ~~t~~~~~~~~~~--~~~~~~~~Pi~~sst~~~~~~~~~~~----~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~s   86 (395)
T PRK05967         13 INTRLAHDGNDPG--DYHGFVNPPVVHASTVLFPDAETMAT----RGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVP   86 (395)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCCcceecCChHHhhc----ccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEEC
Confidence            6799999996542  33689999999999999999887642    23579999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      |||+|+..++.+++++||+||++++.|+++..++...++++|+++++++..+.+++++++++ +||+|++|+|+||++.+
T Consensus        87 SG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~-~TklV~lesPsNP~l~v  165 (395)
T PRK05967         87 SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRP-NTKVVHTEAPGSNTFEM  165 (395)
T ss_pred             cHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCcH
Confidence            99999999999999999999999999999988877788999999999998888899999988 69999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCcc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN  383 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~  383 (532)
                      .|+++|+++|+++|+++|+|++|++++.++|+++|+|++++|++||++||+|+++|+++++++.+++++......|..++
T Consensus       166 ~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~  245 (395)
T PRK05967        166 QDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAG  245 (395)
T ss_pred             HHHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999998888888888777778899999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHH
Q 009523          384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTA  459 (532)
Q Consensus       384 ~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~  459 (532)
                      |+++|+++++++|+..||+++.+|+..+++||++||.|.+|+||+|++||+|+++++|++|+|+|++|+++++    .+.
T Consensus       246 p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~  325 (395)
T PRK05967        246 PDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAK  325 (395)
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999843    678


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +.+|+++|+++.+++|||+++|+++|+ .+     +.+.+...|+.+++||||||+||++|||+||++||+++
T Consensus       326 ~~~f~~~l~l~~~~~slG~~~sLi~~~-~~-----~~~~~~~~~~~~~liRlSvGlEd~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        326 AHAFLDALEIFGLGYSWGGYESLALHV-KL-----GDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFAAA  392 (395)
T ss_pred             HHHHHHhCCcceEccCCCCcceeeeeC-CC-----ChhHhhhccCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            899999999999999999999999874 33     33344446888899999999999999999999999853

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.3e-69  Score=578.12  Aligned_cols=386  Identities=35%  Similarity=0.586  Sum_probs=356.0

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.....+|.|+|.++|+...|+++||+++|++.+++++
T Consensus         9 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~al~~~   86 (431)
T PRK08248          9 LETLAIHAGQEID--PTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIGALAVS   86 (431)
T ss_pred             cchhheeCCcCCC--CCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence            6799999996542  33689999999999999999998888776555679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+..++.+++++||+|+++++.|++++..+...++..|+++++++..|++++++++++ ++++|++++|+||||.+
T Consensus        87 sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~-~tklV~l~sp~NPtG~v  165 (431)
T PRK08248         87 SGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITD-KTKALFAETIGNPKGDV  165 (431)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcc
Confidence            99999999999999999999999999999988887778889999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHH----------------
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL----------------  367 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l----------------  367 (532)
                      .|+++|+++|+++|+++|+|++++.+..+.++++|+|++++|+||+++|||+++||+++.+.+.                
T Consensus       166 ~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~  245 (431)
T PRK08248        166 LDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDP  245 (431)
T ss_pred             cCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCcc
Confidence            9999999999999999999999998887888899999999999999999999999988864321                


Q ss_pred             -----------------HHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCC
Q 009523          368 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK  430 (532)
Q Consensus       368 -----------------i~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~  430 (532)
                                       ....+.....+|..++|+++|+++++++|+..|++++.+|+.+++++|++||+|.+|+||+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~  325 (431)
T PRK08248        246 SYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLP  325 (431)
T ss_pred             ccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence                             112223456779999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009523          431 SHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV  509 (532)
Q Consensus       431 s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~I  509 (532)
                      +||+|+++++|+ .|+|+|++|+++++.+.+.+|+++|+++.+++|||+++|++++|++++|+.+++++++.+|+++++|
T Consensus       326 s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~li  405 (431)
T PRK08248        326 SHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLV  405 (431)
T ss_pred             CCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeE
Confidence            999999999999 6889999999987778899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCHHHHHHHHHHHHhhC
Q 009523          510 RFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       510 RlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      |||||+||++|||+||+|||+++
T Consensus       406 RlsvGlEd~~dL~~Dl~~Al~~~  428 (431)
T PRK08248        406 RLSVGTEAIDDILDDLRQAIRQS  428 (431)
T ss_pred             EEEeccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999853

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.6e-69  Score=569.04  Aligned_cols=380  Identities=33%  Similarity=0.553  Sum_probs=352.7

Q ss_pred             CCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          142 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       142 ~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      ++++|+++|.|...+  ..+++++||||+|+||.|++.++        ..+|.|+||+||+.+.|+++||+++|++++++
T Consensus         3 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~--------~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~   72 (386)
T PRK08045          3 RKQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFNE--------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   72 (386)
T ss_pred             CCcccceeEcCCCCC--CCCCCccCCccCCcceecCCccc--------cCCceeeCCCCccHHHHHHHHHHHhCCCeEEE
Confidence            457899999996542  23689999999999999988542        24699999999999999999999999989999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      ++||++|+..++.+++++||+|+++++.|++++..+.......|+++.+++..|++++++++++ ++++|++|+|+||||
T Consensus        73 ~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~-~tklV~l~sP~NPtG  151 (386)
T PRK08045         73 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLL  151 (386)
T ss_pred             ECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhccc-CCeEEEEECCCCCCC
Confidence            9999999999999999999999999999998887776666667788888888899999999987 799999999999999


Q ss_pred             cccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCC
Q 009523          302 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG  380 (532)
Q Consensus       302 ~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~  380 (532)
                      .+.|+++|.++|+++|+++|+|++|+.+....++.+|+|++++|+|||++|++++++|+++. +++++++++..+...|.
T Consensus       152 ~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~  231 (386)
T PRK08045        152 RVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV  231 (386)
T ss_pred             EecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999887788899999999999999999999999999877 56788888888888899


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      +++++++|+++++++++..|++++.+|++.++++|++||.|.+|+||++++||+|+++++|++|+|+|++|+++++.+.+
T Consensus       232 ~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~  311 (386)
T PRK08045        232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTL  311 (386)
T ss_pred             CCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998777778


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      .+|+++|+++.+++|||+++|++++|++++|+.++++.+.+.|+++++||||||+||++|||+||++||+++
T Consensus       312 ~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  383 (386)
T PRK08045        312 RRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_pred             HHHHHhccceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999863

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=4.9e-69  Score=568.31  Aligned_cols=386  Identities=37%  Similarity=0.624  Sum_probs=359.7

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.+...+|.|+||++|+++.||++||+++|++.+++++
T Consensus         4 ~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~   81 (391)
T TIGR01328         4 FATRAIHAGYPPK--DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATS   81 (391)
T ss_pred             cccceeeCCccCC--CCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence            6799999996542  23689999999999999999988887776656689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+.+++.+++++||+|+++.+.|++++..+...+..+|+++.++|.+|++++++++++ +|++|++|+|+||+|.+
T Consensus        82 sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~-~tklV~le~p~Np~G~v  160 (391)
T TIGR01328        82 SGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKD-NTKIVYFETPANPTMKL  160 (391)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhcc-CCeEEEEECCCCCCCcc
Confidence            99999999999999999999999999999888787778889999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCC
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA  381 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~  381 (532)
                      .|+++|.++|+++|+++|+|++++.++...++..|+|++++|+||++++++++++|+++++++++++++...  ...|..
T Consensus       161 ~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~  240 (391)
T TIGR01328       161 IDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSV  240 (391)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999887778888999999999999999999988999999999998887532  245778


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      +++..+|+++++++++..|++++.+|+++++++|+++|.|..|+||++++||+|+++++|++|+|+|++|+++++.+.+.
T Consensus       241 l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~  320 (391)
T TIGR01328       241 ISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAK  320 (391)
T ss_pred             CCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987677889


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +|+++|+++.+++|||+++|++++|.+++|..+++++++..|+++++||||||+||++|||+||++||+++
T Consensus       321 ~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       321 KLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQALDAL  391 (391)
T ss_pred             HHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4.8e-69  Score=573.27  Aligned_cols=385  Identities=35%  Similarity=0.560  Sum_probs=353.8

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.++....+|.|+|+++|+.+.||++||+++|++.+++++
T Consensus        14 ~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~s   91 (436)
T PRK07812         14 FETKQIHAGQTPD--PATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLA   91 (436)
T ss_pred             cchhheeCCCCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEc
Confidence            6799999995442  23689999999999999999988877776555679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC-CCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd-~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      |||+|+.+++.+++++||+||++...|++++..+...+++.|+++.+++ ..|++++++++++ +|++|++|+|+||+|.
T Consensus        92 SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~-~tklV~ie~~sNp~G~  170 (436)
T PRK07812         92 SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRP-NTKAFFAETISNPQID  170 (436)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCC-CCeEEEEECCCCCCCe
Confidence            9999999999999999999999999999998877767788899999995 6689999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChH----------------
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  366 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~----------------  366 (532)
                      +.|+++|.++||++|+++|||++++.++.++++.+|+|++++|+||++||||++++|+++.+..                
T Consensus       171 v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~  250 (436)
T PRK07812        171 VLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDP  250 (436)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCc
Confidence            9999999999999999999999999988889999999999999999999999999999886331                


Q ss_pred             --------------HHHHHH-HHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCC
Q 009523          367 --------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS  431 (532)
Q Consensus       367 --------------li~~l~-~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s  431 (532)
                                    ++.+++ ......|..++|+++|+++++++|+..|++++++|+.+|+++|++||+|.+|+||++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s  330 (436)
T PRK07812        251 SYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPS  330 (436)
T ss_pred             ccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence                          111222 34557899999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEE
Q 009523          432 HPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR  510 (532)
Q Consensus       432 ~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IR  510 (532)
                      ||+|+++++|+ +|+|+|++|+++++.+.+.+|+++|+++.+++|||+++||+++|+.++|+.+++++++.+|+++++||
T Consensus       331 ~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liR  410 (436)
T PRK07812        331 SPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVR  410 (436)
T ss_pred             CccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEE
Confidence            99999999999 78999999999877778999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCHHHHHHHHHHHHhh
Q 009523          511 FSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       511 lSvG~ed~~dli~dL~~AL~~  531 (532)
                      ||||+||++|||+||++||++
T Consensus       411 lSvGlEd~~dli~dl~~Al~~  431 (436)
T PRK07812        411 LAVGIEGIDDILADLEAGFAA  431 (436)
T ss_pred             EEeccCCHHHHHHHHHHHHHh
Confidence            999999999999999999985

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=3.8e-69  Score=574.21  Aligned_cols=386  Identities=32%  Similarity=0.480  Sum_probs=353.2

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|+|...+  ..+++++||||+|+||.|++.+++.+.+.....+|.|+|.++|+++.+|+++|+++|++.+++++
T Consensus        14 ~~t~~~~~~~~~~--~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v~fs   91 (437)
T PRK05613         14 FETRSIHAGQSVD--SDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAVAFA   91 (437)
T ss_pred             cchHheeCCCCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEEEeC
Confidence            6799999996542  23689999999999999999988777665455679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC-CCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd-~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      |||+|+.+++.+++++||+||+++..|+++...+...+++.|+++++++ ..|++++++++++ +|++|++++++||+|.
T Consensus        92 SG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~-~tk~V~~e~~~Np~~~  170 (437)
T PRK05613         92 SGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQP-NTKAFFGETFANPQAD  170 (437)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCc-cCeEEEEECCCCCCCc
Confidence            9999999999999999999999999999997777677788999999997 5689999999988 6999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHH---------------
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------  367 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l---------------  367 (532)
                      +.|+++|+++|+++|+++|+|++++.+..++++++|+|++++|+||+++|||+.+||+++.+.++               
T Consensus       171 v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~  250 (437)
T PRK05613        171 VLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYF  250 (437)
T ss_pred             ccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCC
Confidence            99999999999999999999999988877899999999999999999999999999998864220               


Q ss_pred             --------------------H-HHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeC
Q 009523          368 --------------------V-TQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY  426 (532)
Q Consensus       368 --------------------i-~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~  426 (532)
                                          + +.........|.+++|+++|+++++++|+..||+++++|+.+++++|++||+|.+|+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y  330 (437)
T PRK05613        251 VTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF  330 (437)
T ss_pred             CCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence                                1 1122355678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCC
Q 009523          427 PGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM  505 (532)
Q Consensus       427 Pgl~s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~  505 (532)
                      |++++||+|+++++|+ .|+|+|++|+++++.+.+.+|+++|+++.+++|||+++|++++|++++|+.++++.++.+|++
T Consensus       331 Pgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~  410 (437)
T PRK05613        331 AGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGIT  410 (437)
T ss_pred             CCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCC
Confidence            9999999999999997 789999999998777889999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          506 DNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       506 ~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +++||||||+||++|||+||++||+++
T Consensus       411 ~~liRlsvGlE~~~dLi~Dl~~Al~~~  437 (437)
T PRK05613        411 QATVRLSVGIEDIDDIIADLEGGFAAI  437 (437)
T ss_pred             CCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999864

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2e-68  Score=568.83  Aligned_cols=386  Identities=33%  Similarity=0.568  Sum_probs=353.6

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|++++||+++|+++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~~av~~   85 (433)
T PRK08134          8 GFDTLALHAGAAPD--PATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGVGAIAT   85 (433)
T ss_pred             CcchhheeCCCCCC--CCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCCcEEEe
Confidence            36799999996542  3368999999999999999998888777655668999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+++++.+++++||+||++...|+++..++...+++.|++++++|.+|++++++++++ +||+|++++|+||+|.
T Consensus        86 sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~-~TklV~~e~~~np~g~  164 (433)
T PRK08134         86 ASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRP-NTRLLFGETLGNPGLE  164 (433)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCcccCc
Confidence            999999999999999999999999999999988876667789999999999899999999988 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChH----------------
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  366 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~----------------  366 (532)
                      +.|+++|+++||++|+++|+|+++++++.+.++++|+|++++|+||+++|||+++||+++....                
T Consensus       165 v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~  244 (433)
T PRK08134        165 VLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPY  244 (433)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCc
Confidence            9999999999999999999999999998888999999999999999999999999998874211                


Q ss_pred             ----------------HHHHH-HHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          367 ----------------LVTQI-RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       367 ----------------li~~l-~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                                      +..+. ......+|..++++++|+++++++++..|++++.+|+.+++++|+++|.|.+|+||++
T Consensus       245 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l  324 (433)
T PRK08134        245 AGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPEL  324 (433)
T ss_pred             ccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence                            00111 1233567889999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009523          430 KSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL  508 (532)
Q Consensus       430 ~s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~  508 (532)
                      ++||+|+++++++ .|+|+|++|+++++.+.+.+|+++|+++.+++|||+++|++++|+.++|..+++++++..|+++++
T Consensus       325 ~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~l  404 (433)
T PRK08134        325 ESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGT  404 (433)
T ss_pred             CCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCe
Confidence            9999999999999 789999999998777788999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCHHHHHHHHHHHHhh
Q 009523          509 VRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       509 IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ||||||+||++|||+||+|||++
T Consensus       405 iRlsvGlE~~~dli~dl~~Al~~  427 (433)
T PRK08134        405 IRLSIGLEDADDLIDDLKRALKA  427 (433)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999985

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.7e-68  Score=568.78  Aligned_cols=385  Identities=35%  Similarity=0.563  Sum_probs=352.4

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.+.||++||+++|++.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~s   80 (425)
T PRK06084          3 LETLAIHAGYSPD--PTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVA   80 (425)
T ss_pred             cchhheeCCcCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEeh
Confidence            5689999985442  23689999999999999999988887776555679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      |||+|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|++++++++++ ++++|++|+|+||+|.+
T Consensus        81 sG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~-~tklV~lesp~NPtG~v  159 (425)
T PRK06084         81 SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDE-RTKAVFCESIGNPAGNI  159 (425)
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhcc-CCcEEEEeCCCCCCCee
Confidence            99999999999999999999999999999888776667778999999999999999999987 69999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHH--H-------------
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--V-------------  368 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l--i-------------  368 (532)
                      .|+++|.++|+++|+++|+|++++.+...+++.+|+|++++|+||+++||++++||+++.+..+  .             
T Consensus       160 ~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~  239 (425)
T PRK06084        160 IDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPD  239 (425)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCC
Confidence            9999999999999999999999999888889999999999999999999999999999864321  0             


Q ss_pred             ------------------HH-HHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          369 ------------------TQ-IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       369 ------------------~~-l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                                        .. .......+|..++|+++|+++++++++..|++++.+|+++++++|++||+|.+|+||++
T Consensus       240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l  319 (425)
T PRK06084        240 PSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGL  319 (425)
T ss_pred             cccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence                              00 11223467899999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHhhhcCC-cccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009523          430 KSHPEHHIATQQMTG-FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL  508 (532)
Q Consensus       430 ~s~p~~~l~~~~~~g-~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~  508 (532)
                      ++||+|.++++|+.| +|+|++|+++++.+.+.+|+++|+++.+++|||+++|++++|..++|..++++++++.|+++++
T Consensus       320 ~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~l  399 (425)
T PRK06084        320 PDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDM  399 (425)
T ss_pred             CCcccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCe
Confidence            999999999999987 8999999998776778999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCHHHHHHHHHHHHhh
Q 009523          509 VRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       509 IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ||||||+||++|||+||++||++
T Consensus       400 iR~svGlEd~~dLi~dl~~Al~~  422 (425)
T PRK06084        400 VRLSIGIEHIDDIIADLAQALDA  422 (425)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999985

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=3.5e-68  Score=563.41  Aligned_cols=383  Identities=36%  Similarity=0.575  Sum_probs=357.4

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|...+   .+++++||||+++||.|++.+++.+.+.+...+|.|+||+||+.+.||++||+++|+++++++
T Consensus        15 ~~~t~~~~~~~~~~---~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~   91 (403)
T PRK07810         15 SQATIGVRGGLLRS---GFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFAT   91 (403)
T ss_pred             CcchhheeCCCCCC---CCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            36799999995432   368899999999999999998877766555567899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||.|+..++.+++++||+|++++..|++++..+...++..|+++++++..|++++++++++ +|++|++|+|+||+|.
T Consensus        92 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~~esp~Nptg~  170 (403)
T PRK07810         92 ASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSV-PTQAVFFETPSNPMQS  170 (403)
T ss_pred             CChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCe
Confidence            999999999999999999999999999999988887778889999999999999999999987 6999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-HHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~l~~~~~~~G~~  381 (532)
                      +.|+++|+++|+++|+++|+|++|+.++..+++..|+|++++|++|+++|||+++||+++++++.+. +++.+....|..
T Consensus       171 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~  250 (403)
T PRK07810        171 LVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  250 (403)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988888889999999999999999999999999999887664 566666778889


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----CH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG----DL  457 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g----~~  457 (532)
                      ++++.+|+++++++++..|++++.+|+.+++++|+++|+|.+|+||++++||+|+++++|++|+|+|++|++++    +.
T Consensus       251 ~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~  330 (403)
T PRK07810        251 LSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAK  330 (403)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986    46


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      +.+.+|+++|+++.+++|||+.+|++++|+.++|..++.+.+...|+++++||||+|+|+++|||+||++||
T Consensus       331 ~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE~~~dli~dl~~Al  402 (403)
T PRK07810        331 KRAFEVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL  402 (403)
T ss_pred             HHHHHHHHhCCceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence            778999999999999999999999999999999999999999999999999999999999999999999998

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=1.5e-67  Score=555.20  Aligned_cols=378  Identities=34%  Similarity=0.593  Sum_probs=350.0

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      .++|+++|.|...+  ..+++++||||++++|.|++..        +..+|.|+||+||+.+.|+++||+++|++.++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~   72 (382)
T TIGR02080         3 KQATIAVRSGLNSD--TQYGCVVPPIYLSTTYNFTGFN--------EPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVT   72 (382)
T ss_pred             CcccceeecCCCCC--CCCCCccCCeeCCceeEeCCcC--------ccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            47899999996542  2368999999999999987532        1236899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+.+++.+++++||+|+++.+.|++++..+...+...++++.+++..|++++++++++ +||+|++|+|+||||.
T Consensus        73 ~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~  151 (382)
T TIGR02080        73 NTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLR  151 (382)
T ss_pred             cCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCE
Confidence            999999999999999999999999999999888776666677889998888899999999987 6999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|.++|+++|+++|+|++|+.+....++..|+|++++|+||+++|++++++|+++. +++++++++.++...|..
T Consensus       152 ~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~  231 (382)
T TIGR02080       152 VVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVT  231 (382)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999887777888899999999999999999999999876 567888888888888999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++|+.+|+++++++++..|++++.+|+..+++||++||.|.+|+||++++||+|+++++|+.|+|+|++|+++++.+.+.
T Consensus       232 ~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~  311 (382)
T TIGR02080       232 GGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVR  311 (382)
T ss_pred             CCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987667788


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +|+++|+++.+++|||+++|++++|++++|..+++++++..|+++++||||||+||++|||+||++||++
T Consensus       312 ~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~dl~~dl~~al~~  381 (382)
T TIGR02080       312 RFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLRA  381 (382)
T ss_pred             HHHHcCCcceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1.8e-67  Score=556.45  Aligned_cols=384  Identities=36%  Similarity=0.620  Sum_probs=359.0

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...   ..++++.+|||++++|.|++.++....+.+...+|.|+|+++|+.++||+++|+++|++++++++
T Consensus         7 ~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~s   83 (390)
T PRK08133          7 FDTLAVRAGQLR---SPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATA   83 (390)
T ss_pred             cchhheeCCCCC---CCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            679999999643   23688999999999999999887766655445578999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+..++.+++++||+||++++.|++++..+...++..|+++++++..|++++++++++ +|++|++|+|+||+|.+
T Consensus        84 sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~ie~p~NptG~v  162 (390)
T PRK08133         84 SGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRP-NTKLFFLETPSNPLTEL  162 (390)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCCc
Confidence            99999999999999999999999999999988877777889999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCcc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN  383 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~  383 (532)
                      .|+++|.++|+++|+++|+|++++.+....++..|+|++++|+||+++|+++++||++++++++++++.......|..++
T Consensus       163 ~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~  242 (390)
T PRK08133        163 ADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLS  242 (390)
T ss_pred             CCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999888777888889999999999999999999999999999888888877778898999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHH
Q 009523          384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKF  463 (532)
Q Consensus       384 ~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~  463 (532)
                      +..+|+++++++++..|++++.+|+..++++|+++|.|.+|+||+++++|+|+++++|+.|+|+|++|+++++.+.+.+|
T Consensus       243 ~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f  322 (390)
T PRK08133        243 PFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRV  322 (390)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998777788999


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +++|+++.+++|||+++|++++|++++|..++++.++.+|+++++||||||+||.+|||+||++||+.
T Consensus       323 ~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  390 (390)
T PRK08133        323 IDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLAA  390 (390)
T ss_pred             HHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999973

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=2.2e-67  Score=560.89  Aligned_cols=386  Identities=33%  Similarity=0.550  Sum_probs=352.5

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhc----------ccCCCCCCCCCchhHHHHHHHHHhh
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK----------RRASFEYGRYGNPTTVVVEEKMSAL  213 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~----------~~~~~~Y~R~~~p~~~~Le~~lA~l  213 (532)
                      +.|.++|.|..++  ..+++++||||+|+||.|++.+++.+.+..          ...+|.|+||+||+...|+++||++
T Consensus        18 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~l   95 (427)
T PRK07049         18 PETQMLNYGYDPE--LSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY   95 (427)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHHH
Confidence            5789999985432  236899999999999999999887765422          1346999999999999999999999


Q ss_pred             hCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE-EEEeCCCCHHHHHHhhc----CCCe
Q 009523          214 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPADMEGLEAALN----NNNV  288 (532)
Q Consensus       214 ~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~-v~~vd~~dle~Le~al~----~~~t  288 (532)
                      +|.+++++++||++|+.+++.+++++||+|+++.+.|+++...+...++.+|++ +.+.+..|+++++++++    ..++
T Consensus        96 eg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~t  175 (427)
T PRK07049         96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRV  175 (427)
T ss_pred             hCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999999999887766667788998 45555667888887764    2369


Q ss_pred             eEEEEeCCCCCCCcccCHHHHHHHHHh------CCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEE
Q 009523          289 SLFFTESPTNPFLRCVDVKLVSDLCHK------KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS  362 (532)
Q Consensus       289 klV~lesP~NptG~v~dl~~I~~la~~------~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv  362 (532)
                      ++||+|+|+||||.+.|+++|.+++++      +++++|+||+|.+++...++..|+|++++|+||+++|++++++|+++
T Consensus       176 klv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv  255 (427)
T PRK07049        176 SLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVL  255 (427)
T ss_pred             eEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEE
Confidence            999999999999999999999999987      79999999999888777888889999999999999999999999999


Q ss_pred             eChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC--CCCchhhhHhh
Q 009523          363 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL--KSHPEHHIATQ  440 (532)
Q Consensus       363 ~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl--~s~p~~~l~~~  440 (532)
                      +++++++.++..+..+|..++++.+|+++++++++..|++++.+|++.++++|+++|+|.+|+||++  ++||+|+++++
T Consensus       256 ~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~  335 (427)
T PRK07049        256 GRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKR  335 (427)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHh
Confidence            9999999999888888999999999999999999999999999999999999999999999999985  99999999999


Q ss_pred             hcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009523          441 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED  520 (532)
Q Consensus       441 ~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~d  520 (532)
                      ||.|+|+|++|+++++.+.+.+|+++|+++.+++|||+++||+++|..++|..++++++...|+++++||||||+||++|
T Consensus       336 ~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~d  415 (427)
T PRK07049        336 QCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHPDD  415 (427)
T ss_pred             hCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHH
Confidence            99999999999998777788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 009523          521 LKADVLQALHA  531 (532)
Q Consensus       521 li~dL~~AL~~  531 (532)
                      ||+||++||++
T Consensus       416 l~~dl~~al~~  426 (427)
T PRK07049        416 LIADLAQALDA  426 (427)
T ss_pred             HHHHHHHHHhc
Confidence            99999999975

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=3.1e-67  Score=555.82  Aligned_cols=385  Identities=36%  Similarity=0.591  Sum_probs=356.6

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...   ..++++.+|||++++|.|++.+++.+.+.+...+|.|+||++|+...||++||+++|++.+++++
T Consensus        11 ~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~~   87 (398)
T PRK07504         11 PATRLVHSGTLR---SQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARATA   87 (398)
T ss_pred             cccceeeCCCCC---CCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEec
Confidence            679999999632   23678999999999999999887766665555689999999999999999999999999899999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||+.|+..++.+++++||+|+++++.|+++...+...++..|+++++++..|++++++++++ +||+|++|+|+||+|.+
T Consensus        88 sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~-~tklV~lesp~NptG~v  166 (398)
T PRK07504         88 SGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRP-NTKVFFLESPTNPTLEV  166 (398)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCcEe
Confidence            99999998888889999999999999999887776667788999999998899999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-HHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~l~~~~~~~G~~~  382 (532)
                      .|+++|.++|+++|+++|+|++|+.++...+..+|+|++++|+||+++|+|+.+||+++++++++. .++......|..+
T Consensus       167 ~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~  246 (398)
T PRK07504        167 IDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSL  246 (398)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999887778888899999999999999999999999999887765 4666667788899


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +++.+++++++++++..|++++.+|+++++++|+++|+|.+|+||++++||+|+++++||+|+|+|++|+++++.+.+.+
T Consensus       247 s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~  326 (398)
T PRK07504        247 SPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFR  326 (398)
T ss_pred             CHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877788899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      |+++|+++.+++|||+++|++++|+.++|..++++.++..|+++++||||+|+||++|||+||++||+++
T Consensus       327 ~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  396 (398)
T PRK07504        327 FLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKV  396 (398)
T ss_pred             HHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999863

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.5e-67  Score=553.97  Aligned_cols=380  Identities=36%  Similarity=0.581  Sum_probs=347.0

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      .+|+++|.|...   ..+++++||||+|+||.|++.+.    +.++..+|.|+|++||++++||+++|+++|++++++++
T Consensus         3 ~~t~~~~~~~~~---~~~~~~~~pi~~~st~~~~~~~~----~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~   75 (385)
T PRK08574          3 RGTDAVRGYRGS---DPYGSLQPPIYLTALFRQEGEAY----PSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFN   75 (385)
T ss_pred             ccceeeecCCCC---CCCCCccCCccCCcceecCcchh----hcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeC
Confidence            468899987443   23689999999999999876532    22334579999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+..++.+++++||+|+++.+.|+++...+.. +...|+++++++. |+++++++++++++++|++|+|+||+|.+
T Consensus        76 sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-~~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v  153 (385)
T PRK08574         76 SGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-LEKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKV  153 (385)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-hhccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEe
Confidence            999999999999999999999999999998877754 3778999988765 68999999976469999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEE-eChHHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv-~~~~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|+++|+++|+++|+|++++.++..+++..|+|++++|+||+++||+|++||+++ ++++++++++..+..+|..+
T Consensus       154 ~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~  233 (385)
T PRK08574        154 IDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM  233 (385)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999988878888899999999999999999999999555 46788888888777789999


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcC--CcccEEEEEEcCCHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT--GFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~--g~G~~vsf~l~g~~~~~  460 (532)
                      +|+.+|+++++++++..|++++.+|+++++++|+++|.|.+|+||++++||+|+++++||+  |+|+|++|+++++.+.+
T Consensus       234 ~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~  313 (385)
T PRK08574        234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAV  313 (385)
T ss_pred             CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999996  69999999998777889


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      .+|+++|+++.+++|||+.+|++++|+.++|..+++++++..|+++++||||||+||++|||+||++||++|
T Consensus       314 ~~~~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  385 (385)
T PRK08574        314 LKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALGSI  385 (385)
T ss_pred             HHHHHcCCcceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-67  Score=555.46  Aligned_cols=370  Identities=35%  Similarity=0.607  Sum_probs=340.6

Q ss_pred             CCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc
Q 009523          159 IVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP  238 (532)
Q Consensus       159 ~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~  238 (532)
                      +.+++++||||+|+||.|++.+++.+.+.+...+|.|+|++||+++.||++||+++|++.+++++|||+|+..++.++++
T Consensus         5 ~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~   84 (397)
T PRK05939          5 IEHGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR   84 (397)
T ss_pred             CCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC
Confidence            34689999999999999999988887776655679999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCC
Q 009523          239 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA  318 (532)
Q Consensus       239 ~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi  318 (532)
                      +||+||++++.|+++..++. .++..|+++++++..|+++|++++++ +|++|++++|+||+|.+.|+++|+++|+++|+
T Consensus        85 ~Gd~Vv~~~~~y~~t~~~~~-~l~~~G~~v~~v~~~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi  162 (397)
T PRK05939         85 AGDHLVSSQFLFGNTNSLFG-TLRGLGVEVTMVDATDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGL  162 (397)
T ss_pred             CCCEEEECCCccccHHHHHH-HHHhcCCEEEEECCCCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCC
Confidence            99999999999999877664 46778999999999999999999987 79999999999999999999999999999999


Q ss_pred             EEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChH--------H-------------HHHHH-HHhh
Q 009523          319 IVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------L-------------VTQIR-NLHH  376 (532)
Q Consensus       319 ~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~--------l-------------i~~l~-~~~~  376 (532)
                      ++|+|++++.+..+++..+|+|++++|+||+++|||++++|+++.+..        +             +..++ ....
T Consensus       163 ~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
T PRK05939        163 LYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLR  242 (397)
T ss_pred             EEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHH
Confidence            999999999888788989999999999999999999999998875321        1             11222 2345


Q ss_pred             hcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC
Q 009523          377 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD  456 (532)
Q Consensus       377 ~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~  456 (532)
                      .+|..++|+++|+++++++|+..|++++.+|+..+++||++||.|.+|+||++++||+|+++++++.|+|+|++|++++.
T Consensus       243 ~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~  322 (397)
T PRK05939        243 DMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG  322 (397)
T ss_pred             hcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          457 LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       457 ~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                       ..+.+|+++++++.+++|||+++|++++|+.++|..++++.++..|+++++||||||+||++|||+||++||++
T Consensus       323 -~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlEd~~dLi~dl~~Al~~  396 (397)
T PRK05939        323 -IDCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA  396 (397)
T ss_pred             -HHHHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHhc
Confidence             57889999999999999999999999999999999999999999999999999999999999999999999975

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=4.2e-67  Score=555.64  Aligned_cols=385  Identities=37%  Similarity=0.596  Sum_probs=359.5

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++++.+.+...+|.|+|+++|+++.||++||+++|++.+++++
T Consensus        10 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~   87 (403)
T PRK07503         10 FSTRAIHHGYDPL--DHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALA   87 (403)
T ss_pred             ccchheeCCCCCC--CCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEc
Confidence            6799999996542  23689999999999999999999888886666689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+.+++.+++++||+||++.+.|+++..++...+...|+++++++.+|++++++++++ +|++|++|+|+||+|.+
T Consensus        88 sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~le~p~NPtG~~  166 (403)
T PRK07503         88 SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISD-KTRMVYFETPANPNMRL  166 (403)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCc-cCcEEEEeCCCCCCCee
Confidence            99999999999999999999999999998887776677889999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH--HhhhcCCC
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGA  381 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~--~~~~~G~~  381 (532)
                      .|+++|.++|+++|+++|+|++|+.++...++..|+|++++|+||+++|++++++|+++++++++++++.  .....|..
T Consensus       167 ~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~  246 (403)
T PRK07503        167 VDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAV  246 (403)
T ss_pred             eCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCC
Confidence            9999999999999999999999998877778888999999999999999999999999998898888874  35566888


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++++.+++++++++++..|++++.+|++.++++|++||.|.+|+||++++||+|+++++|+.|+|+|++|+++++.+.+.
T Consensus       247 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~  326 (403)
T PRK07503        247 MSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGR  326 (403)
T ss_pred             CCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987777889


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +|++.++++.+++|||+++|++++|.+++|..+++++++..|+++++||||||+||++|||+||++||++
T Consensus       327 ~~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~Al~~  396 (403)
T PRK07503        327 RFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQALDA  396 (403)
T ss_pred             HHHHhCCcceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=4.9e-67  Score=550.87  Aligned_cols=376  Identities=37%  Similarity=0.650  Sum_probs=348.3

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|..+|+|...+  ..+++++||||+|+||.|++.+        +..+|.|+|+++|+...||+++|+++|++.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~   72 (380)
T PRK06176          3 MQTKLIHGGISED--TTTGAVSVPIYQTSTYRQDAIG--------RPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFA   72 (380)
T ss_pred             ccceeeECCCCCC--CCCCCccCCcccCCceecCCCC--------CcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEEC
Confidence            5688999996542  2368999999999999998732        23579999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      |||.|+.+++ .+++|||+|+++++.|+++...+...+...|++++++|..|++++++++++ +|++|++|+|+||+|.+
T Consensus        73 SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~  150 (380)
T PRK06176         73 SGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKP-NTKALYLETPSNPLLKI  150 (380)
T ss_pred             CHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCc-CceEEEEECCCCCCcee
Confidence            9999998666 578999999999999999988887778889999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|.++|+++|+++|+|++++.++...+..+|+|++++|++|+++||+++++|+++.+ +++.++++..+...|..+
T Consensus       151 ~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~  230 (380)
T PRK06176        151 TDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVL  230 (380)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998877788899999999999999999999999988875 567788888777788889


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      ++..+|+++++++++..|++++++|+.+++++|+++|.|.+|+||+++++|+|+++++|++|+|+|++|++++ .+.+.+
T Consensus       231 ~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~  309 (380)
T PRK06176        231 GPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN-DSEAVA  309 (380)
T ss_pred             CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985 578899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      |+++|+++.+++|||+++|++++|+.++|..++++.++..|+++++||||||+||++|||+||++||+++
T Consensus       310 f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~Al~~~  379 (380)
T PRK06176        310 FVESLKLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI  379 (380)
T ss_pred             HHHcCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=7e-67  Score=548.65  Aligned_cols=375  Identities=29%  Similarity=0.510  Sum_probs=340.2

Q ss_pred             ccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 009523          146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG  225 (532)
Q Consensus       146 t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG  225 (532)
                      |+++|.|...+  ..+++++||||+|+||.|++.++..    ....+|.|+|.+||++..||++||+++|++++++++||
T Consensus         1 t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~----~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG   74 (377)
T TIGR01324         1 TRLIHSGRQPR--FSQGSVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSG   74 (377)
T ss_pred             CeeEECCCCCC--CCCCCccCCeeCCCceeeCChhhhc----CCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcH
Confidence            56789885442  2368999999999999999865431    23457999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC
Q 009523          226 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD  305 (532)
Q Consensus       226 ~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d  305 (532)
                      ++|+..++.+++++||+||++++.|+++..++...++.+|+++.+++..+.+++++++++ +||+|++|+|+||+|.+.|
T Consensus        75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~-~tklV~lesp~Np~g~~~d  153 (377)
T TIGR01324        75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQP-NTKVLFLEAPSSITFEIQD  153 (377)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCcHHH
Confidence            999999999999999999999999999887766567788999999987766899999987 7999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHH
Q 009523          306 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  385 (532)
Q Consensus       306 l~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~  385 (532)
                      +++|+++|+++|+++|+|++|+.+..++++++|+|++++|++|+++||+|+++|+++++++.+++++.....+|..++|.
T Consensus       154 l~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~  233 (377)
T TIGR01324       154 IPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD  233 (377)
T ss_pred             HHHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999999988899999999999999999999999999999999988888887777889999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHH
Q 009523          386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFI  464 (532)
Q Consensus       386 ~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l  464 (532)
                      .+|+++++++++..||+++++|+.+++++|++||.|.+|+||++++||+|+++++|++|+|+|++|++++ +.+.+.+|+
T Consensus       234 ~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~  313 (377)
T TIGR01324       234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFL  313 (377)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986 567889999


Q ss_pred             HHcCCCceeecCCCcccccccCc-cccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          465 DALKIPYIAPSFGGCESIVDQPA-IMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       465 ~~L~~~~i~vs~G~~~sl~~~pa-~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      ++|+++++++|||+++|++++|. .++|..     +...|+.+++||||||+||++|||+||++||++|
T Consensus       314 ~~l~~~~~~~slG~~~sl~~~~~~~~~~~~-----~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~~  377 (377)
T TIGR01324       314 DHLQLFGLGYSWGGYESLALCNQPELGHRP-----NIKRNLEGPLIRVHIGLENVDDLKADLKAGFEAI  377 (377)
T ss_pred             HhCCcceEeccCCCccceeecCCCCCCHHH-----HHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999997322 555543     4467888899999999999999999999999875

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=9.3e-67  Score=552.60  Aligned_cols=378  Identities=36%  Similarity=0.591  Sum_probs=350.1

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|...+  ..+++++||||++++|.|++..        ...+|.|+|+++|+.+.|+++||+++|+++++++
T Consensus        12 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~   81 (405)
T PRK08776         12 SAATAAVRAGIDRD--TAYGAVTPPIVLSSNFSFDGFG--------NKRQYDYTRSGNPTRDLLGEALAELEGGAGGVIT   81 (405)
T ss_pred             CccchheeCCCCCC--CCCCCccCCEeccceEEeCCCC--------cccCCcccCCCChHHHHHHHHHHHHhCCCceEEE
Confidence            36789999996542  3468999999999999988742        1236899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+.+++.+++++||+|+++.+.|+++..++...++..|+++..++..|+++|++++++ +|++|++|+|+||+|.
T Consensus        82 ~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~  160 (405)
T PRK08776         82 ATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLR  160 (405)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999999888777777788999999998899999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|+++|+++|+++|+|++|+.+..+.++.+|+|++++|+||+++|++++++|+++. ++++.++++......|..
T Consensus       161 v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~  240 (405)
T PRK08776        161 ITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT  240 (405)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999887778888999999999999999999999998877 467878887777777888


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++++.+|+++++++++..|++++.+|+..++++|+++|.|.+|+||++++||+|++++++++|+|+|++|+++++.+.+.
T Consensus       241 ~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~  320 (405)
T PRK08776        241 GSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVR  320 (405)
T ss_pred             CCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987777889


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +|+++|+++.+++|||+.+|++++|+.++|..++++.+...|+++++||||||+||++|||+||++||++
T Consensus       321 ~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~  390 (405)
T PRK08776        321 AFVDGLRYFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGLAR  390 (405)
T ss_pred             HHHHhCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=1.4e-66  Score=548.16  Aligned_cols=380  Identities=38%  Similarity=0.634  Sum_probs=355.1

Q ss_pred             cccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 009523          145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  224 (532)
Q Consensus       145 ~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sS  224 (532)
                      .|.++|.|...   ..++++++|||++++|.|++.+++.+.+.+...+|.|+||++|+..+||++|++++|++.+++++|
T Consensus         1 ~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~s   77 (380)
T TIGR01325         1 ATLAIRGGKER---TEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATAT   77 (380)
T ss_pred             CceeEECCCCC---CCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            36789998633   236889999999999999998777666655556799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc
Q 009523          225 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  304 (532)
Q Consensus       225 G~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~  304 (532)
                      |++|+.+++.+++++||+|+++.+.|++++..+...++.+|+++.+++..|++++++++++ ++++|++|+|+||+|.+.
T Consensus        78 G~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~le~p~np~g~~~  156 (380)
T TIGR01325        78 GMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKP-NTKLVFVETPSNPLGELV  156 (380)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCeee
Confidence            9999999999999999999999999999888777778889999999999999999999987 699999999999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccH
Q 009523          305 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP  384 (532)
Q Consensus       305 dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~  384 (532)
                      |+++|.++|+++|+++|+|++|+.++...+++.|+|++++|+||+++|+++++||++++++++++.++......|..+++
T Consensus       157 dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p  236 (380)
T TIGR01325       157 DIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSP  236 (380)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCH
Confidence            99999999999999999999998887778888999999999999999999999999999999999888877778999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHH
Q 009523          385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI  464 (532)
Q Consensus       385 ~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l  464 (532)
                      +.+++++++++++..|++++.+++++++++|+++|.|.+|+||+++++|+|+++++|+.|+|+|++|+++ +.+.+.+|+
T Consensus       237 ~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~~~~~~~f~  315 (380)
T TIGR01325       237 FNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-DRAAAWKVL  315 (380)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 668889999


Q ss_pred             HHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          465 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       465 ~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      ++|+++.+++|||+++|++.+|++++|..+++++++..|+.+++||||||+||++|||+||++||
T Consensus       316 ~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al  380 (380)
T TIGR01325       316 DAVELVSITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGLEDVDDLIADLKRAL  380 (380)
T ss_pred             HcCCcceEcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999986

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.6e-66  Score=552.95  Aligned_cols=386  Identities=31%  Similarity=0.493  Sum_probs=352.2

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|...+  ..+++++||||+++||.|++.+++.+.++.+..++.|+|.++|+...||++||+++|++.++++
T Consensus         7 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~   84 (427)
T PRK05994          7 GFATLAVHAGAQPD--PTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAV   84 (427)
T ss_pred             CcchhheECCcCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEE
Confidence            36799999995442  2358999999999999999988777766544456899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+.+++.+++++||+||++.+.|+++...+...+...|++++++|..|++++++++++ +|++|++|+|+||+|.
T Consensus        85 ~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~vesp~NptG~  163 (427)
T PRK05994         85 ASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITP-RTKAIFIESIANPGGT  163 (427)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCe
Confidence            999999999999999999999999999999888777777888999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh--H--------------
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--K--------------  366 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~--~--------------  366 (532)
                      +.|+++|.++|+++|+++|+|+++++++.++++++|+|++++|+||+++||++++||+++...  .              
T Consensus       164 v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~  243 (427)
T PRK05994        164 VTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPR  243 (427)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCc
Confidence            999999999999999999999999998888999999999999999999999999999888522  1              


Q ss_pred             -------HHHH----------HHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          367 -------LVTQ----------IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       367 -------li~~----------l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                             +.+.          ........|..++|+.+|+++++++++..|++++.+|+++++++|++||+|.+|+||++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l  323 (427)
T PRK05994        244 PEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGL  323 (427)
T ss_pred             chhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence                   1111          11134567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009523          430 KSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL  508 (532)
Q Consensus       430 ~s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~  508 (532)
                      ++||+|+++++|+ +|+|+|++|+++++.+.+.+|+++|+++.+++|||+++|++++|+.++|..+++++++..|+++++
T Consensus       324 ~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~l  403 (427)
T PRK05994        324 PDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDV  403 (427)
T ss_pred             CCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCc
Confidence            9999999999997 789999999998777889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCHHHHHHHHHHHHhh
Q 009523          509 VRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       509 IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ||||||+||++|||+||++||++
T Consensus       404 iRlsvGlE~~~dli~dl~~Al~~  426 (427)
T PRK05994        404 VRLSIGIEDVDDIIADLEQALAK  426 (427)
T ss_pred             EEEEeccCCHHHHHHHHHHHHhh
Confidence            99999999999999999999985

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=4.3e-66  Score=547.63  Aligned_cols=386  Identities=36%  Similarity=0.616  Sum_probs=357.9

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      +.|.++|.|...+  ..++++++|||++++|.|++.+++.+.+..+..+|.|+||++|+..+||++||+++|.+++++++
T Consensus         9 ~~t~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~   86 (400)
T PRK06234          9 FATKAIHGGHIGD--KQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVVAA   86 (400)
T ss_pred             ccchheECCCCCC--CCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEEc
Confidence            5799999996542  23689999999999999999887776665545678999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+..++.+++++||+|+++.+.|+.+...+...++..|+++++++..|++++++++++ +|++|++|+|+||+|.+
T Consensus        87 sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~-~tklI~iesP~NPtG~v  165 (400)
T PRK06234         87 SGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKA-NTKVVYLETPANPTLKV  165 (400)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhcc-CCeEEEEECCCCCCCCc
Confidence            99999999999999999999999999999888777777889999999999999999999987 69999999999999999


Q ss_pred             cCHHHHHHHHHhC--CCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH--hhhcC
Q 009523          304 VDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLG  379 (532)
Q Consensus       304 ~dl~~I~~la~~~--gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~--~~~~G  379 (532)
                      .|+++|.++|+++  |+++|+|++|+.++...++..|+|++++|+||+++|++++++|+++++++++++++..  ....|
T Consensus       166 ~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g  245 (400)
T PRK06234        166 TDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTG  245 (400)
T ss_pred             CCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcC
Confidence            9999999999997  9999999999988777788889999999999999999999999999999988888753  34578


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA  459 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~  459 (532)
                      ..++++.+|+++++++++..|++++.+|+++++++|+++|.|.+|+||++++||+|++++++++++|+|++|+++++.+.
T Consensus       246 ~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~  325 (400)
T PRK06234        246 SVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEE  325 (400)
T ss_pred             CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999876677


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +.+|+++|+++++++|||+++|++++|++++|..+++++++..|+++++||||||+||++|||+||++||+++
T Consensus       326 ~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        326 GKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLI  398 (400)
T ss_pred             HHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999863

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=5.4e-66  Score=542.67  Aligned_cols=374  Identities=38%  Similarity=0.659  Sum_probs=346.0

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|+|...+  ..+++++||||+|+||.|++..        ...+|.|+|+++|+...||++||+++|++.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~   72 (377)
T PRK07671          3 AKTKLIHGGIIGD--PSTGAVSVPIYQVSTYKQEAVG--------KHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFG   72 (377)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCCcceecCCCC--------CcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeC
Confidence            5799999996542  2368999999999999988742        23479999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      |||+|+..++ .++++||+|+++++.|++++..+...+..+|+++++++..|++++++++++ +|++|++|+|+||+|.+
T Consensus        73 sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~-~tklV~le~P~NPtg~~  150 (377)
T PRK07671         73 SGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRP-NTKAIYVETPTNPLLKI  150 (377)
T ss_pred             CHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcc
Confidence            9999887765 578999999999999998887776677888999999998899999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|.++|+++|+++|+|++|+.++...+..+|+|++++|+||+++||+++++|+++. +++++++++..+...|+.+
T Consensus       151 ~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~  230 (377)
T PRK07671        151 TDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGIL  230 (377)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999998877778888999999999999999999989998776 4578888888888889999


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +++.+|+++++++++..|++++++|++.++++|+++|+|.+|+||++++||+|+++++|+.|+|+|++|++ ++.+.+.+
T Consensus       231 ~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~-~~~~~~~~  309 (377)
T PRK07671        231 GPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV-GSEETANK  309 (377)
T ss_pred             CHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe-CCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 56788999


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      |+++|+++.+++|||+++|++++|+.++|..++++.++.+|+++++||||||+||++|||+||++||+
T Consensus       310 f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~  377 (377)
T PRK07671        310 VLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQALA  377 (377)
T ss_pred             HHHhCCcceEccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999985

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=6.1e-66  Score=544.38  Aligned_cols=381  Identities=35%  Similarity=0.567  Sum_probs=352.6

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.+...+|.|+||++|+.++||+++|+++|+++++++
T Consensus         5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~   82 (386)
T PRK06767          5 HMETALIHHGYTSE--EHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAF   82 (386)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEE
Confidence            36799999996542  2368999999999999999998888877666678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+|+++++.|+++...+....+..|+++.+++..|++++++++++ +|++|++|+|+||+|.
T Consensus        83 ~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~-~tklV~lesp~NptG~  161 (386)
T PRK06767         83 GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRP-NTKLIFVETPINPTMK  161 (386)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCc-CceEEEEeCCCCCCce
Confidence            999999999999999999999999999999988877667778999999988899999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHH-HHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~-~~~~~~G~~  381 (532)
                      +.|+++|.++|+++|+++|+|++|+.+....++..|+|++++|+||+++|++++++|++++++++++++. ..+...|+.
T Consensus       162 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~  241 (386)
T PRK06767        162 LIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGI  241 (386)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998887778888899999999999999999999999999998887754 455667888


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++++.+|+++++++++..|++++.+++++++++|+++|+|..|.||      +|+++++|++++|+|++|+++++.+.+.
T Consensus       242 ~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~~~~~~~  315 (386)
T PRK06767        242 MAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKGGKEETQ  315 (386)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcCCHHHHH
Confidence            8999999999999999999999999999999999999999999998      6889999999999999999987667889


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +|+++|+++++++|||+++|++++|+.++|..+++++++..|+++++||||||+||++|||+||++||++|
T Consensus       316 ~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  386 (386)
T PRK06767        316 AFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKKI  386 (386)
T ss_pred             HHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=7.4e-66  Score=550.80  Aligned_cols=374  Identities=33%  Similarity=0.592  Sum_probs=343.5

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+   .+++++||||+|+||.|++..        ....|.|+|++||++++|++++|+++|.+.+++++
T Consensus        87 ~~t~~~~~~~~~~---~~~~~~~Pi~~sst~~~~~~~--------~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~  155 (464)
T PLN02509         87 VSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFT  155 (464)
T ss_pred             cchHheeCCCCCC---CCCCccCCccccceecCcccc--------ccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence            7899999995542   267999999999999887632        22469999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+.+++ .++++||+||++++.|+++..++...+...|+++.+++..|++++++++++ +|++|++|+|+||+|.+
T Consensus       156 SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~-~TklV~lesPsNPtG~i  233 (464)
T PLN02509        156 SGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGP-QTKLVWLESPTNPRQQI  233 (464)
T ss_pred             cHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCc-CCeEEEEECCCCCCCCH
Confidence            9999986655 578999999999999999887776677788999999998899999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|+++|+++|+++|+|++++.++...++.+|+|++++|++|+++||+++++|+++.++ .+.+.++..+...|..+
T Consensus       234 ~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l  313 (464)
T PLN02509        234 SDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL  313 (464)
T ss_pred             HHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999988878888899999999999999999999999998754 45566666666667889


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +|+.+|+++++++++..|++++.+++++++++|++||.|++|+||+|++||+|+++++|++|+|+|++|++ ++.+.+.+
T Consensus       314 ~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~-~~~~~~~~  392 (464)
T PLN02509        314 APFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKH  392 (464)
T ss_pred             CHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 56788899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      |+++|+++.+++|||+++|++++|+.++|..++++++++.||++++||||||+||++|||+||++||+.
T Consensus       393 f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE~~~DLi~Dl~~Al~~  461 (464)
T PLN02509        393 LVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRT  461 (464)
T ss_pred             HHHcCCcceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999974

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-65  Score=538.56  Aligned_cols=374  Identities=41%  Similarity=0.684  Sum_probs=346.8

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|.++|.|.+    ..+++++||||+|+||.|++.           .+|.|+|.++|+.++||+++|+++|++.++++
T Consensus         2 ~~~t~~~~~~~~----~~~~~~~~pi~~~~~~~~~~~-----------~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~   66 (376)
T PRK06460          2 KDATRTVREDID----EATGAITTPIYQTTAYHYPEG-----------EKYRYSREANPTVLELTKKIVELENAEMGVAF   66 (376)
T ss_pred             CcceeeeecCCC----CCCCCccCCccCCcceeeCCC-----------CCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence            378999999852    236899999999999998863           26999999999999999999999999889999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+|+++.+.|++++..+...++..|+++..++.++.+.+++.+++ ++++|++|+|+||+|.
T Consensus        67 ~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~-~tklV~l~sp~NPtG~  145 (376)
T PRK06460         67 SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLLR  145 (376)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCc
Confidence            999999999999999999999999999998888887778888999999987776667766665 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~  382 (532)
                      +.|+++|.++|+++|+++|+|++|+.++...++..++|++++|+||+++|++|.++|+++++++++++++..+..+|..+
T Consensus       146 v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~  225 (376)
T PRK06460        146 VVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSL  225 (376)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999988766667777899999999999999998999999999999999988888888889


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      ++..+|+++++++++..|++++.+|+++++++|+++|.|.+|+||+|++||+|+++++|++|+|+|++|+++++.+.+.+
T Consensus       226 ~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~  305 (376)
T PRK06460        226 DPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALK  305 (376)
T ss_pred             CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877788999


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      |+++|+++.+++||||++|++.+|++++|+.++++.+.+.|+++++||||||+||++|||+||++||+++
T Consensus       306 ~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        306 VMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             HHHhCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=1.3e-65  Score=547.04  Aligned_cols=384  Identities=39%  Similarity=0.632  Sum_probs=348.7

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|+|...+  ..+++++||||+++||.|++.+++.+.++....+|.|+|+++|+.++||++||+++|.+.+++++
T Consensus         2 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~   79 (418)
T TIGR01326         2 FETLQLHAGQEPD--PTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVA   79 (418)
T ss_pred             ccceeEECCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEc
Confidence            5688999986542  23689999999999999999987766655444568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      |||+|+..++.+++++||+||++.+.|++++..+...++..|+++++++..|++++++++++ ++++|++|+|+||+|.+
T Consensus        80 sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~-~t~~V~le~p~NPtg~v  158 (418)
T TIGR01326        80 SGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDE-NTKAVFAETIGNPAINV  158 (418)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCee
Confidence            99999999999999999999999999999888777778889999999998899999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHH---------------
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV---------------  368 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li---------------  368 (532)
                      .|+++|.++|+++|+++|+|++++.++...++..|+|++++|+||+++|+|+++||+++.++++.               
T Consensus       159 ~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~  238 (418)
T TIGR01326       159 PDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS  238 (418)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCc
Confidence            99999999999999999999999888777888889999999999999999999998888543211               


Q ss_pred             ----------------HHHH-HHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCC
Q 009523          369 ----------------TQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS  431 (532)
Q Consensus       369 ----------------~~l~-~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s  431 (532)
                                      .+.+ ......|..++|..+|+++++++++..|++++.+|+..++++|.++|+|..|+||++++
T Consensus       239 q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~  318 (418)
T TIGR01326       239 YHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS  318 (418)
T ss_pred             cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence                            1111 23445688889999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEE
Q 009523          432 HPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR  510 (532)
Q Consensus       432 ~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IR  510 (532)
                      ||+|+++++|+ .|+|+|++|+++++.+.+.+|+++|+++.+++|||+++|++++|..++|..+++++++..|+++++||
T Consensus       319 ~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR  398 (418)
T TIGR01326       319 HPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIR  398 (418)
T ss_pred             CccHHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEE
Confidence            99999999999 78999999999877777899999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCHHHHHHHHHHHHh
Q 009523          511 FSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       511 lSvG~ed~~dli~dL~~AL~  530 (532)
                      ||||+||++|||+||++||+
T Consensus       399 ~svGlE~~~dl~~dl~~Al~  418 (418)
T TIGR01326       399 LSVGIENIDDIIADLEQALE  418 (418)
T ss_pred             EEecCCCHHHHHHHHHHhhC
Confidence            99999999999999999985

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.7e-65  Score=537.66  Aligned_cols=377  Identities=38%  Similarity=0.646  Sum_probs=342.4

Q ss_pred             CCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          142 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       142 ~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      ++++|.++|.|...+  ..+++++||||++++|.|++.+++.........+|.|+|++||++++||+++++++|++.+++
T Consensus         7 ~~~~t~~~~~~~~~~--~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~   84 (384)
T PRK06434          7 NGFNTRAVQSGELRD--PRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALS   84 (384)
T ss_pred             CCcccceeECCCCCC--CCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEE
Confidence            347899999986542  347899999999999999998766533222235799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      ++|||+|+.+++.+++++||+||++...|++++.++...+..+|++++++|.++.+.++  +++.++++|++|+|+||++
T Consensus        85 ~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~  162 (384)
T PRK06434         85 FSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTL  162 (384)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCc
Confidence            99999999999999999999999999999999988877788899999999987666665  4444699999999999999


Q ss_pred             cccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCC
Q 009523          302 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG  380 (532)
Q Consensus       302 ~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~  380 (532)
                      .+.|+++|+++|++++  ++||+++++++..+|+..|+|++++|.+|+++||++++||+++.+ +++.++++..+..+|.
T Consensus       163 ~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~  240 (384)
T PRK06434        163 KVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGS  240 (384)
T ss_pred             eeecHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCC
Confidence            9999999999999998  567999999988999999999999999999999999999998774 5677778777667899


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      .++++.+|+++++++++..|++++.+|++.++++|++||.|.+|+||+++      ++++|++|+|+|++|++++ .+.+
T Consensus       241 ~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~-~~~~  313 (384)
T PRK06434        241 NPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRS-MEDV  313 (384)
T ss_pred             CCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECC-HHHH
Confidence            99999999999999999999999999999999999999999999999984      7899999999999999985 6788


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .+|+++|+++.+++|||+++|++++|+.++|..+++++++..|+++++||||||+||++|||+||+|||++
T Consensus       314 ~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGlEd~~dLi~dl~~Al~~  384 (384)
T PRK06434        314 HKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDLIKDIENALSK  384 (384)
T ss_pred             HHHHHhCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999974

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=4.8e-65  Score=534.76  Aligned_cols=368  Identities=48%  Similarity=0.808  Sum_probs=349.0

Q ss_pred             CcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCC
Q 009523          162 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG  241 (532)
Q Consensus       162 ~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd  241 (532)
                      ++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.++||+++|+++|++++++++||++|+..++.+++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            36899999999999999998888776666789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEE
Q 009523          242 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC  321 (532)
Q Consensus       242 ~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lI  321 (532)
                      +|+++.+.|+++...+...++..|+++.+++.+|++++++++++ ++++|++|+|+||+|.+.|+++|+++|+++|+++|
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~li  159 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLV  159 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence            99999999999988777677788999999999999999999987 79999999999999999999999999999999999


Q ss_pred             EECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHH
Q 009523          322 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR  400 (532)
Q Consensus       322 vDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r  400 (532)
                      +|++++.++...++.+|+|++++|+||+++||+++++|++++++ +++++++.....+|..+++..+++++++++++..|
T Consensus       160 vD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r  239 (369)
T cd00614         160 VDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR  239 (369)
T ss_pred             EECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHH
Confidence            99999988777888999999999999999999999999999987 88899988877789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      ++++.+|+++++++|+++|.|.+|+||+++++|+|+++++++.|.|+|++|+++++.+.+.+|+++|+++.+++|||+++
T Consensus       240 ~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~  319 (369)
T cd00614         240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVE  319 (369)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999866788999999999999999999999


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      |++++|+.++|..++++.++..|+++++||||||+||++|||+||++||+
T Consensus       320 sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGlE~~~dl~~dl~~al~  369 (369)
T cd00614         320 SLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK  369 (369)
T ss_pred             eeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999984

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=6e-65  Score=535.09  Aligned_cols=374  Identities=34%  Similarity=0.598  Sum_probs=344.7

Q ss_pred             cccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 009523          145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  224 (532)
Q Consensus       145 ~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sS  224 (532)
                      +|.++|.|..+  . .+++++||||+|+||.|++.+        ...+|.|+|+++|+.++||+++++++|++++++++|
T Consensus         2 ~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~s   70 (378)
T TIGR01329         2 STLLVNTDNKN--D-PYDASSMPIYQTATFKQPLAI--------ENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSS   70 (378)
T ss_pred             CceeEeCCCCC--C-CCCCcCCCeecCcceecCCcc--------ccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECC
Confidence            57889998543  2 268999999999999987643        124699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc
Q 009523          225 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  304 (532)
Q Consensus       225 G~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~  304 (532)
                      |++|+.+++. ++++||+|+++++.|+++..++...++.+|+++++++..|++++++++++ +||+|++|+|+||+|.+.
T Consensus        71 G~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~-~tklv~le~psnptg~v~  148 (378)
T TIGR01329        71 GMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGP-KTKLVLLESPTNPLQKIV  148 (378)
T ss_pred             HHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCeee
Confidence            9999988775 78999999999999999887777677888999999999999999999987 799999999999999999


Q ss_pred             CHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCcc
Q 009523          305 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALN  383 (532)
Q Consensus       305 dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~~  383 (532)
                      |+++|+++|+++|+++|+|++++.++...++.+|+|++++|++|+++||+++++|+++.+ +++.++++..+...|..++
T Consensus       149 dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~  228 (378)
T TIGR01329       149 DIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLA  228 (378)
T ss_pred             cHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCC
Confidence            999999999999999999999988888888899999999999999999999899999875 4566778877776788899


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHH
Q 009523          384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKF  463 (532)
Q Consensus       384 ~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~  463 (532)
                      ++.+|+++++++++..|++++.+|+..++++|++||.+.+|.||+++++|+|+++++++.|+|+|++|++ ++.+.+.+|
T Consensus       229 ~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~-~~~~~~~~~  307 (378)
T TIGR01329       229 PFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET-GSVALSKRL  307 (378)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE-CCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 566668999


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      ++.|+++++++|+|+++|++++|+.++|..++++++++.|+++++||||||+||++|||+||++||+++
T Consensus       308 ~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  376 (378)
T TIGR01329       308 VEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTA  376 (378)
T ss_pred             HHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999863

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=7.7e-65  Score=536.01  Aligned_cols=375  Identities=39%  Similarity=0.636  Sum_probs=344.4

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.++       ...+|.|+|+++|+...||++||+++|.+.+++++
T Consensus        13 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~-------~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~   83 (388)
T PRK07811         13 FATRAIHAGYEPD--PATGAVNPPIYASSTFAQDGVGG-------LRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFS   83 (388)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCCcceecCCccc-------ccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeC
Confidence            6799999986542  33689999999999999887532       12468999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+.+++.+++++||+|+++.+.|++++..+...++.+|+++.+++..|+++|++++++ +||+|++|+|+||+|.+
T Consensus        84 sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~  162 (388)
T PRK07811         84 SGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITP-RTKLIWVETPTNPLLSI  162 (388)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCc-CCeEEEEECCCCCccee
Confidence            99999999999999999999999999999887776677788999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|+++|+++|+++|+|++|+.+....++..|+|++++|++|+++|++++++|+++.+ +++.++++..+...|...
T Consensus       163 ~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~  242 (388)
T PRK07811        163 TDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVP  242 (388)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998877778888999999999999999999899988875 567777777766678888


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      ++..+|+++++++++..|++++.+|++.++++|+++|+|.+|+||++++||+|+++++|++|+|+|++|+++++.+.+.+
T Consensus       243 s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~  322 (388)
T PRK07811        243 GPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARD  322 (388)
T ss_pred             CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877778899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      |+++|+++.+++|||+++|++++|..++|..++++   ..|+++++||||||+||++|||+||++||++
T Consensus       323 f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svGlE~~~dl~~dl~~al~~  388 (388)
T PRK07811        323 FCARTKVFTLAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLADLEQALGQ  388 (388)
T ss_pred             HHHhCCcceeeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999998864   4699999999999999999999999999974

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2e-64  Score=533.43  Aligned_cols=380  Identities=26%  Similarity=0.431  Sum_probs=347.2

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++...+.++..+|.|+||+||++++||+++|+++|++.++++
T Consensus         9 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~   86 (394)
T PRK07050          9 ALQTRIVQPDDQIP--PGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ   86 (394)
T ss_pred             CccchheECCCCCC--CCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence            57899999996542  2368999999999999999998877666555568999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+.+++.+++++||+||++++.|+++..++...+...|+++++++..+.+++++++++ +||+|++|+|+||+|.
T Consensus        87 ~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~-~tklV~le~p~Np~~~  165 (394)
T PRK07050         87 PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQP-NTRLIWLEAPGSVTME  165 (394)
T ss_pred             ccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCcc
Confidence            999999999999999999999999999999887776667888999999988788899999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|+++|+++|+++|+|++|+.+..++++.+|+|++++|++|+++||+++++|+++. +++++++++..+...|..
T Consensus       166 ~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~  245 (394)
T PRK07050        166 VPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG  245 (394)
T ss_pred             HhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999998889999999999999999999999998997776 568888898888888999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTA  459 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--~~~~  459 (532)
                      ++++++|+++++++++..|++++.+|+.+++++|+++|.|.+|+||+++++|+|.++++++.++|++++|++++  +.+.
T Consensus       246 ~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~  325 (394)
T PRK07050        246 VSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQ  325 (394)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986  3578


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..+|++.|+++++++|||+++|+++ |..++|....     ..++.+++||||||+||++|||+||++||++
T Consensus       326 ~~~~~~~l~~~~~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svGlE~~~dl~~dl~~al~~  391 (394)
T PRK07050        326 VDAFVEALELFAIGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIGLEDEADLIADLEQALEA  391 (394)
T ss_pred             HHHHHHcCCCCeeccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999997 8776665542     2336679999999999999999999999985

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=3e-63  Score=524.26  Aligned_cols=376  Identities=37%  Similarity=0.610  Sum_probs=348.1

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|.|...+  ..+++++||||++++|.|++.++        ..+|.|+|.++|+.+.||+++|+++|++.+++++
T Consensus         7 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~   76 (390)
T PRK08064          7 IDTLLLHNQYKHD--KQTGAVNVPIYHASTFHQFDFDT--------FGKYDYSRSGNPTREALEDIIAELEGGTKGFAFA   76 (390)
T ss_pred             cccceeeCCCCCC--CCCCCccCCcccCcceecCcccc--------cCCCcccCCCChhHHHHHHHHHHHhCCCCeEEEC
Confidence            6799999996542  23689999999999999887543        2468999999999999999999999998999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      |||.|+.+++. ++++||+||++++.|++++..+...++..|+++.+++..|++++++++++ +|++|++|+|+||||.+
T Consensus        77 sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~-~tklV~l~~p~NptG~~  154 (390)
T PRK08064         77 SGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKP-NTKLFYVETPSNPLLKV  154 (390)
T ss_pred             CHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCcEe
Confidence            99999988886 78999999999999999888777777889999999999899999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|.++|+++|+++|+|++|+.+....+.++|+|++++|+||+++|++++++|+++.+ ++++++++..+..+|...
T Consensus       155 ~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~  234 (390)
T PRK08064        155 TDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVL  234 (390)
T ss_pred             ccHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998877777888999999999999999999899988775 578899988888889999


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      ++..+|+++++++++..|++++.+|+.+++++|+++|.|.+|+||+++++|+|++++++++|+|+|++|++++ .+++.+
T Consensus       235 ~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~  313 (390)
T PRK08064        235 GVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS-EEAVRQ  313 (390)
T ss_pred             CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999974 678899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      |+++++++.+++|+|+.+|++++|+.++|..++.+.+...|+++++||||+|+||++|+|+||++||+++
T Consensus       314 f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        314 FVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             HHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999853

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=5.7e-63  Score=525.42  Aligned_cols=382  Identities=30%  Similarity=0.506  Sum_probs=345.6

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhccc----CCCCCCCCCchhHHHHHHHHHhhhCCCc
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR----ASFEYGRYGNPTTVVVEEKMSALEGAES  218 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~----~~~~Y~R~~~p~~~~Le~~lA~l~ga~~  218 (532)
                      ...++++|+|...++   +++++||||+|+||.|++.+++++.+.+..    .+|.|+|++||++++||+++|+++|++.
T Consensus        17 ~~~~~~~~~~~~~~~---~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~   93 (418)
T PLN02242         17 DPAAALASARHEFGE---HGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEA   93 (418)
T ss_pred             ChHHHHhcCCCCCCC---CCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCe
Confidence            366889999977532   467899999999999999998887775542    3589999999999999999999999999


Q ss_pred             EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhc-ccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCC
Q 009523          219 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL-PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT  297 (532)
Q Consensus       219 ~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l-~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~  297 (532)
                      +++++||++|+..++.+++++||+|+++.+.|+++...+...+ +..|+++++++..|+++++++++++++++|++++|+
T Consensus        94 ~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~  173 (418)
T PLN02242         94 AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESIS  173 (418)
T ss_pred             EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCC
Confidence            9999999999999999999999999999999998876665444 347999999998899999999986349999999999


Q ss_pred             CCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--
Q 009523          298 NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--  375 (532)
Q Consensus       298 NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--  375 (532)
                      ||||.+.|+++|+++|+++|+++|+|++|. ++.+++..+|+|++++|+||+++|++++++|++++++++++.++..+  
T Consensus       174 NPtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~  252 (418)
T PLN02242        174 NPTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHG  252 (418)
T ss_pred             CCCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhh
Confidence            999999999999999999999999999996 45567778899999999999999999999999999999988887653  


Q ss_pred             --hhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhc---CCcccEEE
Q 009523          376 --HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM---TGFGGVVS  450 (532)
Q Consensus       376 --~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~---~g~G~~vs  450 (532)
                        ...|..+++..+++++++++++..|++++.+|+.+++++|++++ + +|.||++++||+|+++++++   .|+|+|++
T Consensus       253 ~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~-~-~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~s  330 (418)
T PLN02242        253 ALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG-L-KVIYPGLEDHPQHALLKSMANKGYGFGGLLC  330 (418)
T ss_pred             hhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC-C-EEECCCCCCCccHHHHHHhcccCCCceeEEE
Confidence              34677889999999999999999999999999999999999996 3 89999999999999999999   58999999


Q ss_pred             EEEcCCHHHHHHHHHHcCCC----ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHH
Q 009523          451 FEVDGDLTATIKFIDALKIP----YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED-FEDLKADV  525 (532)
Q Consensus       451 f~l~g~~~~~~~~l~~L~~~----~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed-~~dli~dL  525 (532)
                      |+++ +.+.+.+|+++++++    .+++|||+++|++++|+.++|..++.++++..|+++++||||+|+|+ ++|||+||
T Consensus       331 f~l~-~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~~dli~dl  409 (418)
T PLN02242        331 LDMD-TEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQF  409 (418)
T ss_pred             EEEC-CHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCCCHHHHHHHH
Confidence            9997 467899999999977    88999999999999999999999999999999999999999999995 99999999


Q ss_pred             HHHHhh
Q 009523          526 LQALHA  531 (532)
Q Consensus       526 ~~AL~~  531 (532)
                      ++||++
T Consensus       410 ~~al~~  415 (418)
T PLN02242        410 EKALSA  415 (418)
T ss_pred             HHHHHH
Confidence            999985

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=7.9e-62  Score=508.41  Aligned_cols=356  Identities=35%  Similarity=0.569  Sum_probs=323.5

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|.++|.|...+  ..+++++||||+|+||.|++..        ...+|.|+|++||+..+||++||+++|++.+++++
T Consensus         7 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~--------~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~   76 (364)
T PRK07269          7 INTILAQAGIKSD--EATGALVTPLHFSTTYQHPEFG--------QSTGFDYTRTKNPTRAKLEETLAAIESADYALATS   76 (364)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCCcceecCCCC--------CcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeC
Confidence            6799999996542  2368999999999999988731        23579999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+.+++ .++++||+||++.+.|+++..++....+..++++.+.  .|++++++++++ +||+|++|+|+||+|.+
T Consensus        77 sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~-~TklV~lesP~NPtg~~  152 (364)
T PRK07269         77 SGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEE-DTDIVYIETPTNPLMVE  152 (364)
T ss_pred             CHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCc-CceEEEEECCCCCCCee
Confidence            9999999988 4679999999999999998877665555556665543  489999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|+++|+++|+++|+|++|+.++.++++..|+|++++|+||+++||+|+++|+++++ ++++++++..+...|..+
T Consensus       153 ~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~  232 (364)
T PRK07269        153 FDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVL  232 (364)
T ss_pred             eCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999998888889999999999999999999999999998874 678888887777778899


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +++.+|+++++++++..|++++.+|+++++++|++||.|.+|.||+                .|++++|++. +.+.+.+
T Consensus       233 s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~-~~~~~~~  295 (364)
T PRK07269        233 SPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVA-DETRIPH  295 (364)
T ss_pred             CHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEEC-CHHHHHH
Confidence            9999999999999999999999999999999999999999999997                4889999997 4677899


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      |++.++++.+++|||+.+|++++|+.++|..++++.|..+|+++++||||||+||++|||+||+|||+
T Consensus       296 f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dli~dl~~al~  363 (364)
T PRK07269        296 ILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQALE  363 (364)
T ss_pred             HHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999996

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-60  Score=503.40  Aligned_cols=374  Identities=35%  Similarity=0.553  Sum_probs=342.1

Q ss_pred             ccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 009523          146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG  225 (532)
Q Consensus       146 t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG  225 (532)
                      ..+||++...   ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|++++||+++|+++|++.+++++||
T Consensus        11 ~~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG   87 (389)
T PRK05968         11 AALITAHDEG---NAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASG   87 (389)
T ss_pred             hheeecCCCc---cCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCH
Confidence            3467887654   3479999999999999999999888877666667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC
Q 009523          226 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD  305 (532)
Q Consensus       226 ~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d  305 (532)
                      |+|+.+++.+++++||+|+++.+.|++++..+...++..|+++++++..|++++++++ + +|++|++|+|+|+++.+.|
T Consensus        88 ~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~d  165 (389)
T PRK05968         88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-P-GAKLLYLESPTSWVFELQD  165 (389)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-c-cCCEEEEECCCCCCCcHHH
Confidence            9999999999999999999999999999888877788889999999999999999998 4 5899999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcCCCccH
Q 009523          306 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNP  384 (532)
Q Consensus       306 l~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G~~~~~  384 (532)
                      +++|+++|+++|+++|+|++++.+...+++.+|+|++++|+||+++||+++++|+++++++++++++.... ..|+.+++
T Consensus       166 l~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~  245 (389)
T PRK05968        166 VAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSP  245 (389)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCCh
Confidence            99999999999999999999988877778889999999999999999999889999999998888876443 46778999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHH
Q 009523          385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI  464 (532)
Q Consensus       385 ~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l  464 (532)
                      +.+++++++++++..|++++.+++++++++|+++|.|..|.||++++||.     +++.|+|+|++|+++++ ....+|+
T Consensus       246 ~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~-----~~~~g~g~~~sf~~~~~-~~~~~f~  319 (389)
T PRK05968        246 FEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPP-----AGLSGTSGLFSFIFREG-IDVRAFA  319 (389)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChH-----HhCCCCceEEEEEECCH-HHHHHHH
Confidence            99999999999999999999999999999999999999999999999983     45678999999999853 5778999


Q ss_pred             HHcCCCceeecCCCcccccccCccccccC-CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          465 DALKIPYIAPSFGGCESIVDQPAIMSYWD-LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       465 ~~L~~~~i~vs~G~~~sl~~~pa~~s~~~-~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++|+.+++++|+|+.+|+++ |+.++|.. .+.+.++..|+++++||||||+||++|||+||++||++
T Consensus       320 ~~L~~~~~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~  386 (389)
T PRK05968        320 DALKLFRLGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAA  386 (389)
T ss_pred             HhCCccEEecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence            99999999999999999998 99999888 55888889999999999999999999999999999985

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=3.5e-60  Score=497.05  Aligned_cols=363  Identities=35%  Similarity=0.564  Sum_probs=322.8

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      ++.|+++|.|...+  ..+++++||||+|+||.|++.+        +..+|.|+||++|+..+|+++||+++ .++++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~   71 (366)
T PRK07582          3 GDGTRSVHAGGPEA--VPGEPVLPGPVFAAPYHLSPGE--------PTGPDTYGRASNPTWRALEAALGELE-GAEALVF   71 (366)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccccceEEccCcc--------ccCCceeECCCCccHHHHHHHHHHHc-CCCEEEE
Confidence            47799999985432  2368999999999999998531        23468899999999999999999999 7889999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+||++.+.|+++..++...++.+|+++++++..+...   .+.+ ++++|++|+|+||+|.
T Consensus        72 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~-~t~lV~le~p~NPtg~  147 (366)
T PRK07582         72 PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALA-GADLVLAETPSNPGLD  147 (366)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---Hhcc-CceEEEEECCCCCCCC
Confidence            99999999999999999999999999999987776666778899999998765432   2334 6999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|+++|+++|+++|+|++|+.+....++++|+|++++|+||+++|++++++|++++ +++++++++.++...|..
T Consensus       148 v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~  227 (366)
T PRK07582        148 VCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAI  227 (366)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998777777888999999999999999999999999987 468888888888888999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++++.+|+++++++++..|++++.+|++.++++|+++|.|.+|+||++++||+|+++++||+|+|+|++|+++ +.+++.
T Consensus       228 ~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~~~~~~  306 (366)
T PRK07582        228 PGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-DAAAAE  306 (366)
T ss_pred             CCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-CHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997 578899


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +|+++++++.+++|||+++|++.++..+           ..++++++||||+|+||++|+|+||++||+++
T Consensus       307 ~~~~~l~~~~~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svGlE~~~dli~dl~~al~~~  366 (366)
T PRK07582        307 RFVAASRLVVAATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCGIEDTDDLVADLERALDAL  366 (366)
T ss_pred             HHHHhCCcceecccCCCccchhhhHHHc-----------CCCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999987543211           22377899999999999999999999999875

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=5e-59  Score=488.52  Aligned_cols=362  Identities=34%  Similarity=0.592  Sum_probs=330.9

Q ss_pred             CCCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEE
Q 009523          141 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  220 (532)
Q Consensus       141 ~~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i  220 (532)
                      |++++|..+|.|...+  ..+++++||||+|+||.|++.+        +..+|.|+||+||+.+.||++||+++|++.++
T Consensus         2 ~~~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~   71 (366)
T PRK08247          2 MSTIETKLAQIGNRSD--ERTGTVNPPVYFSTAYRHEGIG--------ESTGFDYSRTGNPTRGVLEQAIADLEGGDQGF   71 (366)
T ss_pred             CCCcchhheeCCCCCC--CCCCCccCCcccCcccccCCCC--------CcCCccccCCCCchHHHHHHHHHHHhCCCcEE
Confidence            4568899999996542  2368999999999999887632        23479999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCC
Q 009523          221 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  300 (532)
Q Consensus       221 ~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~Npt  300 (532)
                      +++||++|+.+++ .++++||+||++++.|+++...+...++.+|+++.+++..|++++++++++ +|++|++|+|+||+
T Consensus        72 ~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~  149 (366)
T PRK08247         72 ACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPL  149 (366)
T ss_pred             EEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhccc-CceEEEEECCCCCC
Confidence            9999999998765 678999999999999999988887778889999999999999999999987 79999999999999


Q ss_pred             CcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcC
Q 009523          301 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG  379 (532)
Q Consensus       301 G~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G  379 (532)
                      |.+.|+++|+++|+++|+++|+|++|+.++...+...|+|++++|+||+++|++++++|+++++ +++.++++..+...|
T Consensus       150 ~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g  229 (366)
T PRK08247        150 MQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAG  229 (366)
T ss_pred             CcHHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999988887788888999999999999999999999999986 678888887777778


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA  459 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~  459 (532)
                      ..++++.+|+++++++++..|++++.+|++.++++|+++|++..|.||+                .|++++|++++ .+.
T Consensus       230 ~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~~-~~~  292 (366)
T PRK08247        230 AVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQD-EEW  292 (366)
T ss_pred             CCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEECC-HHH
Confidence            8899999999999999999999999999999999999999999999986                47899999974 567


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..+|++.++++.+++|||+.++++.+|+.++|..++++.|...|+++++||||+|+|+.+|||+||++||++
T Consensus       293 ~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE~~~dl~~dl~~al~~  364 (366)
T PRK08247        293 VNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAFKQ  364 (366)
T ss_pred             HHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            789999999999999999999999999999999999999999999999999999999999999999999975

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=5e-31  Score=270.32  Aligned_cols=319  Identities=19%  Similarity=0.207  Sum_probs=241.8

Q ss_pred             HHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh--c----cCCCEEEEcCCCCcchHH
Q 009523          184 DFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL--V----PAGGHIVTTTDCYRKTRI  255 (532)
Q Consensus       184 ~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al--l----~~Gd~VIv~~~~y~~t~~  255 (532)
                      ..|+|+++.|.|||......++.|+++|+++|++  +.+++++|+|+++++++..  .    +.|.|||++..+|++..+
T Consensus        27 ~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~  106 (386)
T COG1104          27 EVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLN  106 (386)
T ss_pred             hhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHH
Confidence            4567888899999999999999999999999983  4666666779999999873  2    247899999999999998


Q ss_pred             HHHHhcccCCcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-
Q 009523          256 FIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-  329 (532)
Q Consensus       256 ~~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-  329 (532)
                      .++.+ +..|++|++++++     |+++|+++|++ +|.+|.+...||.+|.++|+++|.++|+++|+++++|.+++.+ 
T Consensus       107 ~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~-~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gk  184 (386)
T COG1104         107 TCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRP-DTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGK  184 (386)
T ss_pred             HHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCC-CceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCc
Confidence            88655 7889999999876     89999999998 7999999999999999999999999999999999999998764 


Q ss_pred             CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHH-HHHH-HHH---hhhcCCCccHHHHHH----HHHhHHHHHHH
Q 009523          330 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQI-RNL---HHVLGGALNPNAAYL----IIRGMKTLHLR  400 (532)
Q Consensus       330 ~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l-i~~l-~~~---~~~~G~~~~~~~a~l----~l~~l~tl~~r  400 (532)
                      ++.+...+++|++..|.||+.|+.|   .|+++.++.. +..+ ..-   +....++.+......    +....+.+...
T Consensus       185 ipi~~~~~~vD~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~  261 (386)
T COG1104         185 IPIDLEELGVDLLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEE  261 (386)
T ss_pred             eeccccccCcceEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777899999999999999998   5666655422 1211 111   111223333332222    22233445555


Q ss_pred             HHHHHHHHHHHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCc
Q 009523          401 VQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      ..+......++.+.|.+. |.+...   +-   +.        .+.++++.|.+++  ...+.++-.|+..+|++|.|++
T Consensus       262 ~~~~~~lr~~l~~~l~~~~p~~~~~---g~---~~--------~rlP~~~~~~f~g--v~gE~ll~~L~~~gI~vStGSA  325 (386)
T COG1104         262 NARLRKLRDRLEDGLLEIIPDVYLN---GD---DE--------PRLPNILNFSFPG--VEGESLLLALDLAGIAVSTGSA  325 (386)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEc---CC---cc--------cCCCCeEEEEeCC--CcHHHHHHhccccCeEEecccc
Confidence            556666667777777765 544211   11   11        2357799999987  5678888899999999999977


Q ss_pred             ccccccCccccccCCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          480 ESIVDQPAIMSYWDLSQSERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       480 ~sl~~~pa~~s~~~~~~~~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++        +....+...+.++|++    .+.||||+|..++++.++.+.++|.+
T Consensus       326 Cs--------S~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~  373 (386)
T COG1104         326 CS--------SGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKE  373 (386)
T ss_pred             cc--------CCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHH
Confidence            54        3334567888999986    46899999998888877777776653

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.5e-26  Score=242.75  Aligned_cols=306  Identities=20%  Similarity=0.230  Sum_probs=224.6

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~-~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .|..+.+.....++.|+++|+++|++  +.|+|+.|+ ++++.+..++   +++||+||+++.+|+++...+..+.++.|
T Consensus        57 ~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~G  136 (405)
T COG0520          57 AHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTG  136 (405)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcC
Confidence            34455555567888999999999985  556666665 9999999988   69999999999999999888877788889


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCC
Q 009523          266 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGA  339 (532)
Q Consensus       266 v~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~ga  339 (532)
                      +++++++.+     +++++++.+++ +||+|.+...+|.||.+.|+++|+++||++|++++||.+++.+ .+.+..++|+
T Consensus       137 a~v~~i~~~~~g~~~~~~~~~~i~~-~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~  215 (405)
T COG0520         137 AKVRVIPLDDDGLLDLDALEKLITP-KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGC  215 (405)
T ss_pred             cEEEEEecCCCCCcCHHHHHHhcCC-CceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCC
Confidence            999988753     58999998887 7999999999999999999999999999999999999998765 4567778899


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh----------------------hcCCCccHHHHHHHHHhHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMKTL  397 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~----------------------~~G~~~~~~~a~l~l~~l~tl  397 (532)
                      |++++|.|||+.|+.  ..|++++++++++.+.....                      .-.++++....+.+..+++.+
T Consensus       216 Df~afsgHKwl~gP~--GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~  293 (405)
T COG0520         216 DFLAFSGHKWLLGPT--GIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYL  293 (405)
T ss_pred             CEEEEcccccccCCC--ceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHH
Confidence            999999999666663  27999999998887632110                      111223333333333333332


Q ss_pred             H-----HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          398 H-----LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       398 ~-----~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                      .     ...++..+..+++.+.|++.|+++-. .|...             ..+++++|.+++.  ....+...|...+|
T Consensus       294 ~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~-g~~~~-------------~r~~~vsF~v~~~--~~~dv~~~L~~~gI  357 (405)
T COG0520         294 LEIGMEAIEAHERELTEYLLEGLSELPGVEIY-GPPDA-------------DRGGIVSFNVKGI--HPHDVATLLDEKGI  357 (405)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCCcc-------------cCceEEEEEeCCC--CHHHHHHHHHhCCe
Confidence            2     22233446677788888888887543 33211             1478999999873  22333444444568


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++..|..+..   |.           .+..++ .+.+|+|+++.++++.++.|.++|++
T Consensus       358 ~vr~g~~ca~---p~-----------~~~~~~-~~~iR~S~~~YNt~edid~l~~aL~~  401 (405)
T COG0520         358 AVRAGHHCAQ---PL-----------HRLLGV-DATIRASLHLYNTEEDVDRLLEALKK  401 (405)
T ss_pred             EEEecccccc---HH-----------HHhcCC-CCceEEEEeecCCHHHHHHHHHHHHH
Confidence            8888855321   11           122344 34499999999999999999999875

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=4.7e-26  Score=241.65  Aligned_cols=294  Identities=16%  Similarity=0.173  Sum_probs=207.2

Q ss_pred             CchhHHHHHHHHHhhhCC-C-c-EEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          199 GNPTTVVVEEKMSALEGA-E-S-TVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga-~-~-~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .....+.+++++|+++|+ + + +++++|+++++++++.++    +++||+|++++++|++.+..+....+..|++++.+
T Consensus        61 ~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v  140 (401)
T PRK10874         61 LTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKL  140 (401)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEE
Confidence            345577889999999997 3 3 455566679999999887    47999999999999987666656667789998887


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEEC
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHS  345 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S  345 (532)
                      +.     .|++++++++++ +|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+....++|+++.|
T Consensus       141 ~~~~~~~~d~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s  219 (401)
T PRK10874        141 PLGADRLPDVDLLPELITP-RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFS  219 (401)
T ss_pred             ecCCCCcCCHHHHHHhcCc-CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEe
Confidence            64     378999999987 7999999999999999999999999999999999999998643 3344445689999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHHHH-----H
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTLH-----L  399 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~tl~-----~  399 (532)
                      +||++|++|   .|+++.++++++.+..+..                     ...++.+......+..+++.+.     .
T Consensus       220 ~~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~  296 (401)
T PRK10874        220 GHKLYGPTG---IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQ  296 (401)
T ss_pred             cccccCCCc---cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHH
Confidence            999888776   5899999888876543210                     0012233333333334444332     1


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCc
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      ..++..+.++++.+.|+++|++..+..|                 .+++++|.+++.  ....+.+.|...++.++.|..
T Consensus       297 ~~~~~~~l~~~l~~~l~~~~g~~~~~~~-----------------~~~i~~~~~~~~--~~~~~~~~L~~~gI~v~~g~~  357 (401)
T PRK10874        297 AESWSRSLATLAEDALAKLPGFRSFRCQ-----------------DSSLLAFDFAGV--HHSDLVTLLAEYGIALRAGQH  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEeCCC-----------------CCcEEEEEECCc--CHHHHHHHHHHCCcEEecccc
Confidence            2234445667777788777766422111                 245888888652  224455556556788877754


Q ss_pred             ccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          480 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       480 ~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ++              ......+|. .+.||+|++..++++.++.+.++|+
T Consensus       358 ~~--------------~~~~~~~g~-~~~iRiS~~~~nt~edid~ll~al~  393 (401)
T PRK10874        358 CA--------------QPLLAALGV-TGTLRASFAPYNTQSDVDALVNAVD  393 (401)
T ss_pred             ch--------------HHHHHHhCC-CCEEEEEecccCCHHHHHHHHHHHH
Confidence            22              111223453 4799999998777777777776665

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.95  E-value=1.9e-25  Score=237.56  Aligned_cols=297  Identities=16%  Similarity=0.162  Sum_probs=210.1

Q ss_pred             CCchhHHHHHHHHHhhhCC-C--cEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          198 YGNPTTVVVEEKMSALEGA-E--STVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga-~--~~i~~sSG~~Ai~~al~a----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      ......+++++++|+++|+ +  +++++++++++++.++.+    ++++||+|++++++|++....+...++..|++++.
T Consensus        64 ~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  143 (406)
T PRK09295         64 QATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRV  143 (406)
T ss_pred             HHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEE
Confidence            3445678899999999996 2  345555556999988876    46899999999999998776665666778999888


Q ss_pred             eCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEE
Q 009523          271 IDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLH  344 (532)
Q Consensus       271 vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~  344 (532)
                      ++.     .|+++|++++++ +|++|++++|+||||.++|+++|.++|+++|+++++|++++.+. ..+...+++|+++.
T Consensus       144 v~~~~~~~~d~~~l~~~i~~-~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~  222 (406)
T PRK09295        144 IPLNPDGTLQLETLPALFDE-RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVF  222 (406)
T ss_pred             EecCCCCCCCHHHHHHhcCC-CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEe
Confidence            864     378999999987 79999999999999999999999999999999999999987653 23444578999999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHh----------------------hhcCCCccHHHHHHHHHhHHHHH----
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLIIRGMKTLH----  398 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----------------------~~~G~~~~~~~a~l~l~~l~tl~----  398 (532)
                      |+||.+|++|   .|+++.++++++.+....                      +...++.+....+.+..+++.+.    
T Consensus       223 s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~  299 (406)
T PRK09295        223 SGHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGL  299 (406)
T ss_pred             ehhhccCCCC---cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCH
Confidence            9999888776   588888888766543210                      01122334433333344444332    


Q ss_pred             -HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009523          399 -LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       399 -~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G  477 (532)
                       ...++..+.++++.+.|.+.++++ +..|.               ..+++++|.+++.  ....+...|...++.++.|
T Consensus       300 ~~i~~~~~~l~~~l~~~l~~~~~~~-~~~~~---------------~~~~iv~~~~~~~--~~~~~~~~L~~~gI~v~~g  361 (406)
T PRK09295        300 NNIAEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKH--HAYDVGSFLDNYGIAVRTG  361 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEE-EeCCC---------------CCceEEEEEECCc--CHHHHHHHHHhCCeEEecc
Confidence             222344455667777777776653 32221               0246899998752  2233444555668888877


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..++.   +           ....+|. ++.||+|++..++++.++.|.++|+.
T Consensus       362 ~~c~~---~-----------~~~~~~~-~~~iRiS~~~ynt~~did~l~~~l~~  400 (406)
T PRK09295        362 HHCAM---P-----------LMAYYNV-PAMCRASLAMYNTHEEVDRLVAGLQR  400 (406)
T ss_pred             ccchH---H-----------HHHHHCC-CCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            54321   1           1223443 36899999999998888999888864

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=1.9e-25  Score=236.81  Aligned_cols=292  Identities=16%  Similarity=0.164  Sum_probs=205.6

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+.+++.+|+++|++   ++++++++++++++++.++    +++||+|++++++|++....+...++..|++++.++.
T Consensus        60 ~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  139 (398)
T TIGR03392        60 ARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI  139 (398)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence            45677899999999973   3455666679999999887    5799999999999998765555566778999888864


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCc
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  347 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~s  347 (532)
                      +     |++++++++++ +|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+....++|+++.|+|
T Consensus       140 ~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~  218 (398)
T TIGR03392       140 GADLLPDIRQLPELLTP-RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGH  218 (398)
T ss_pred             CCCCCcCHHHHHHHhcc-CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecc
Confidence            2     78999999987 6999999999999999999999999999999999999998643 333444568999999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHHH-----HHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----HLRV  401 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~tl-----~~r~  401 (532)
                      |.+|+.|   .|+++.++++++.+..+..                     ...++.+......+..+++.+     ....
T Consensus       219 K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~  295 (398)
T TIGR03392       219 KLYGPTG---IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAE  295 (398)
T ss_pred             cccCCCc---eEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9888765   6899999888776643210                     011233332333333333332     1223


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccc
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCES  481 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~s  481 (532)
                      ++..+.++++.+.|++.+++.....|                 .+++++|.+++.  ....+.+.|...++.++.|..++
T Consensus       296 ~~~~~l~~~l~~~l~~l~g~~~~~~~-----------------~~~i~~~~~~~~--~~~~l~~~L~~~gI~v~~g~~~~  356 (398)
T TIGR03392       296 AWSVSLADLAEERLAQLPGFRSFRCP-----------------GSSLLAFDFAGV--HHSDLAALLAESGIALRAGQHCA  356 (398)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEeCCC-----------------CCcEEEEEeCCc--CHHHHHHHHHhCCEEEecCccch
Confidence            34445667777777777765422111                 145888888752  23455666666788888775432


Q ss_pred             ccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          482 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       482 l~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      .              .....+|. ++.||+|++..++++.++.+.++|+
T Consensus       357 ~--------------~~~~~~g~-~~~iRvS~~~~~t~~ei~~l~~~l~  390 (398)
T TIGR03392       357 Q--------------PLMAALGV-SGTLRASFAPYNTQQDVDALVDAVG  390 (398)
T ss_pred             H--------------HHHHHhCC-CCEEEEEeeccCCHHHHHHHHHHHH
Confidence            1              11123343 4799999998777777777766665

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=230.40  Aligned_cols=287  Identities=16%  Similarity=0.187  Sum_probs=198.5

Q ss_pred             chhHHHHHHHHHhhhCC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          200 NPTTVVVEEKMSALEGA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga----~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      .+..+.+++.+++..|.    ++.+++++| ++++..++.+++++||+|++++|.|.....    .++..|+++..++.+
T Consensus        68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~  143 (389)
T PRK05957         68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEM----AITMAGCQPILVPTD  143 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH----HHHhcCCEEEEeecC
Confidence            35567778888887774    344555555 589999999999999999999999987543    335568888877542


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----ccc----cc
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL----SL  337 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~~l----~~  337 (532)
                           |++++++++++ ++++|++.+|+||||.+++   +++|+++|+++|+++|+|++|......     ...    ..
T Consensus       144 ~~~~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  222 (389)
T PRK05957        144 DNYQLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSG  222 (389)
T ss_pred             CCCCcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCcc
Confidence                 78999999987 6999999999999999998   788999999999999999997643211     111    11


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAK  413 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la~  413 (532)
                      ...+++.|+||.+|.+| .+.|++++++++++++.......+...+......+...++.    +....++..++++.+.+
T Consensus       223 ~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~  301 (389)
T PRK05957        223 NHTISLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLK  301 (389)
T ss_pred             CcEEEEecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            24588999999998776 46899999999999998776655544454555544444432    34444555677777888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCcccccc
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYW  492 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~  492 (532)
                      .|++.+++..+..|                ..|.++|++++.+ .....|.+.+ +..++.+..|..+..          
T Consensus       302 ~L~~~~~~~~~~~~----------------~gg~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~----------  354 (389)
T PRK05957        302 SLGQLQDRCTLHPA----------------NGAFYCFLKVNTD-LNDFELVKQLIREYRVAVIPGTTFGM----------  354 (389)
T ss_pred             HHHhcCCCccccCC----------------CeeEEEEEeCCCC-CChHHHHHHHHHHCCEEEccchhhCC----------
Confidence            88876543222211                1356788888643 2344555665 345788887754320          


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecCCCHHHH---HHHHHHHHh
Q 009523          493 DLSQSERLKYGIMDNLVRFSFGVEDFEDL---KADVLQALH  530 (532)
Q Consensus       493 ~~~~~~~~~~gi~~~~IRlSvG~ed~~dl---i~dL~~AL~  530 (532)
                                 ..++++|||+|..+.+++   ++.|.+.++
T Consensus       355 -----------~~~~~iRis~~~~~~~~l~~~~~~l~~~~~  384 (389)
T PRK05957        355 -----------KNGCYLRIAYGALQKATAKEGIERLVQGLK  384 (389)
T ss_pred             -----------CCCCEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence                       014699999997555444   444444443

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=2.7e-24  Score=227.27  Aligned_cols=276  Identities=18%  Similarity=0.201  Sum_probs=196.6

Q ss_pred             CchhHHHHHHHHHhhh----CC----Cc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEE
Q 009523          199 GNPTTVVVEEKMSALE----GA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  269 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~----ga----~~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~  269 (532)
                      +.....+||+++|+.+    |.    ++ +++++++++|+..++++++.|||+||+++|.|.....    .....|.++.
T Consensus        63 ~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~----~~~~~gg~~v  138 (393)
T COG0436          63 PSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEA----AVKLAGGKPV  138 (393)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH----HHHhcCCEEE
Confidence            4555667777777665    31    34 6666666799999999999999999999999988553    3445577777


Q ss_pred             EeCC-----C---CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----c
Q 009523          270 VIDP-----A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K  333 (532)
Q Consensus       270 ~vd~-----~---dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~  333 (532)
                      .++.     +   |+++|++++++ +||+|++++||||||.+++   +++|+++|++||+++|.||+|.....-     .
T Consensus       139 ~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s  217 (393)
T COG0436         139 PVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPS  217 (393)
T ss_pred             EEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCC
Confidence            7662     1   68999999998 8999999999999999997   678899999999999999997653221     1


Q ss_pred             cccc----CCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHH
Q 009523          334 ALSL----GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQ  402 (532)
Q Consensus       334 ~l~~----gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~  402 (532)
                      .+..    ..-|+++|+||.++..|. +.||++++ +++++.+.+.+.....+.+...++++..+++.      .....+
T Consensus       218 ~~~~~~~~~~~i~i~s~SK~~~mtGw-RvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~  296 (393)
T COG0436         218 ILELAGARDRTITINSFSKTYGMTGW-RIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMRE  296 (393)
T ss_pred             HhhcCCCcceEEEEeccccccccccc-ceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHH
Confidence            1211    235899999999997775 57899988 78888888776666655666655555555542      222224


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH-cCCCceeecCCCccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA-LKIPYIAPSFGGCES  481 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~-L~~~~i~vs~G~~~s  481 (532)
                      ...++++.+.+.|.+.+++..+..|.                ++..++..++.. .+...|... |+..++++..|..+.
T Consensus       297 ~~~~rrd~l~~~l~~~~g~~~~~~p~----------------Ga~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v~PG~~Fg  359 (393)
T COG0436         297 EYRERRDLLVEALNEIGGLSVVKPPE----------------GAFYLFPKIPEL-LDSEEFAKKLLEEAGVAVVPGSGFG  359 (393)
T ss_pred             HHHHHHHHHHHHHHhcCCeeeccCCC----------------eeEEEEeecCCC-CCHHHHHHHHHHhCCEEEecccccC
Confidence            56678888899999887765554453                345677777642 222333333 234478888886643


Q ss_pred             ccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC
Q 009523          482 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED  517 (532)
Q Consensus       482 l~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed  517 (532)
                      .-                    ..+++||||++..+
T Consensus       360 ~~--------------------~g~~~vRis~~~~~  375 (393)
T COG0436         360 EP--------------------PGEGYVRLSLATSE  375 (393)
T ss_pred             CC--------------------CCCCeEEEEEecCH
Confidence            10                    13689999999765

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=230.55  Aligned_cols=284  Identities=15%  Similarity=0.201  Sum_probs=191.7

Q ss_pred             hHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          202 TTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ..+.+.+.+++.+|.     +++++++++++++..++.+++++||+|+++.|+|+....    .++..|.++..++.   
T Consensus        83 LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~----~~~~~g~~v~~v~~~~~  158 (405)
T PRK06207         83 IRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRK----LVEFFEGEMVPVQLDYL  158 (405)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHH----HHHHcCCEEEEEecccc
Confidence            334444455555563     345555555699999999999999999999999987553    44556777665543   


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc-c--
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL-S--  336 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l-~--  336 (532)
                             .|+++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|.....    ..+. .  
T Consensus       159 ~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~  237 (405)
T PRK06207        159 SADKRAGLDLDQLEEAFKA-GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALP  237 (405)
T ss_pred             CcccCCCcCHHHHHHhhhh-cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCC
Confidence                   278999999877 6999999999999999998   66788889999999999999875321    1111 1  


Q ss_pred             --cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHH
Q 009523          337 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALR  410 (532)
Q Consensus       337 --~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~~  410 (532)
                        ....+++.|+||.++.+| .+.||+++++++++++...........+.+....+...++    .+..++++..+++..
T Consensus       238 ~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~  316 (405)
T PRK06207        238 IDPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDD  316 (405)
T ss_pred             CCcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence              123489999999998555 5689999999999988876655544444444444443442    245556666677777


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|++++++. +..|.                .|.++|++++........|.+.+. ..++.+..|..+.        
T Consensus       317 l~~~L~~~~~~~-~~~p~----------------gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~--------  371 (405)
T PRK06207        317 LLRVLRGVEGVF-VRAPQ----------------AGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFS--------  371 (405)
T ss_pred             HHHHHhcCCCce-ecCCC----------------eeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhC--------
Confidence            888887765442 22221                467889998742123455666663 4577777775432        


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHH---HHHHHHHHh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL---KADVLQALH  530 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl---i~dL~~AL~  530 (532)
                                   +..++++|||++.+ .+++   ++.|.++++
T Consensus       372 -------------~~~~~~~Ris~~~~-~~~l~~al~rl~~~l~  401 (405)
T PRK06207        372 -------------PHTADSIRLNFSQD-HAAAVAAAERIAQLIE  401 (405)
T ss_pred             -------------CCCCCeEEEEecCC-HHHHHHHHHHHHHHHH
Confidence                         01257999999973 3333   444444443

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.94  E-value=1.6e-24  Score=231.81  Aligned_cols=299  Identities=18%  Similarity=0.200  Sum_probs=208.9

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~a----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+++++.+++++|++   +++++++++++++.++.+    .+++||+|+++.++|++....+....+..|++++.++.
T Consensus        76 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~  155 (424)
T PLN02855         76 DAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGL  155 (424)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEec
Confidence            44678999999999972   455666667999988876    36899999999999998776666666778999888764


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCc
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  347 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~s  347 (532)
                      +     |++++++++++ +|++|++++|+||||.++|+++|.++|+++|+++++|++++.+ ...+..++++|+++.|+|
T Consensus       156 ~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~  234 (424)
T PLN02855        156 TPDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSH  234 (424)
T ss_pred             CCCCCcCHHHHHHHhcc-CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecc
Confidence            2     78999999987 7999999999999999999999999999999999999998654 334445678999999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHHH-----HHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----HLRV  401 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~tl-----~~r~  401 (532)
                      |++|++|   .|+++.++++++++..+..                     ...++.+....+.+..+++.+     ....
T Consensus       235 K~~gp~G---~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~  311 (424)
T PLN02855        235 KMCGPTG---IGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIH  311 (424)
T ss_pred             cccCCCc---cEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9887665   6888888887766542210                     001122222222233333322     2222


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCcc
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCE  480 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~  480 (532)
                      ++..+.++++.+.|++.++++ +..|.- +.+.         ..+++++|.+++  .....+.+.|... ++.++.|..+
T Consensus       312 ~~~~~l~~~l~~~L~~~~g~~-i~~~~~-~~~~---------~r~~~v~~~~~~--~~~~~v~~~L~~~~gI~v~~g~~c  378 (424)
T PLN02855        312 EYEVELGTYLYEKLSSVPGVR-IYGPKP-SEGV---------GRAALCAFNVEG--IHPTDLSTFLDQQHGVAIRSGHHC  378 (424)
T ss_pred             HHHHHHHHHHHHHHhcCCCEE-EeCCCc-cccc---------CcccEEEEEECC--cCHHHHHHHhcccCCEEEechhhh
Confidence            344456667777777777764 333321 1010         136799999875  2344567777655 8888877553


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +.    .          ....+|+ ++.||+|++..++++.++.|.++|++
T Consensus       379 ~~----~----------~~~~~g~-~~~iRiS~~~ynt~~di~~l~~~l~~  414 (424)
T PLN02855        379 AQ----P----------LHRYLGV-NASARASLYFYNTKEEVDAFIHALKD  414 (424)
T ss_pred             hH----H----------HHHHhCC-CCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            31    0          1123454 46899999998877777777777653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.94  E-value=1.4e-24  Score=229.91  Aligned_cols=299  Identities=14%  Similarity=0.120  Sum_probs=203.5

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      |+|..  ++.+||+++|+++|.+++++++||+.|+..++.+++++||+|+++++.|+++...+  .+  .+.++.+++..
T Consensus        39 yg~~~--~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~--~l--~~~~~~~~~~~  112 (392)
T PLN03227         39 YGTID--AHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGV--SL--SRANVRWFRHN  112 (392)
T ss_pred             cCChH--HHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH--HH--cCCeEEEeCCC
Confidence            66655  78999999999999999999999999999999999999999999999999876543  12  24566667776


Q ss_pred             CHHHHHH---hhcC----------CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---------
Q 009523          275 DMEGLEA---ALNN----------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------  332 (532)
Q Consensus       275 dle~Le~---al~~----------~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---------  332 (532)
                      |++++++   .+++          .++++|++|+|+|++|.+.|+++|.++|++||+++|+||+++.+...         
T Consensus       113 d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~  192 (392)
T PLN03227        113 DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEH  192 (392)
T ss_pred             CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHH
Confidence            6665555   3321          25899999999999999999999999999999999999998643221         


Q ss_pred             ---cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH--hhhcCCCccHHHHHHHHHhHHHH---HHHHHHH
Q 009523          333 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGALNPNAAYLIIRGMKTL---HLRVQQQ  404 (532)
Q Consensus       333 ---~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~--~~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~  404 (532)
                         .| ..++|+++.|++|++|+    ++|++++++++++.++..  ...+++.++|..++.++..++..   ..++++.
T Consensus       193 ~g~~p-~~~~Div~~slsk~~g~----~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l  267 (392)
T PLN03227        193 AGLKP-MVHAEIVTFSLENAFGS----VGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRL  267 (392)
T ss_pred             cCCCC-CCCceEEEeechhhhhc----cCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence               12 24779999999999874    468888998888776542  23466666777666665555432   3456667


Q ss_pred             HHHHHHHHHHHHh--CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH--------HHHHHHHHcCCCceee
Q 009523          405 NSTALRMAKILEA--HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--------ATIKFIDALKIPYIAP  474 (532)
Q Consensus       405 ~~~a~~la~~L~~--~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~--------~~~~~l~~L~~~~i~v  474 (532)
                      .++.+++.+.|++  +|.+..+.- ++.-.         ....|.|+.+++.+...        ....+.+.+...++.+
T Consensus       268 ~~~~~~l~~~L~~~~~~~~~~~rg-~~~~~---------~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~  337 (392)
T PLN03227        268 HDSIANLYSTLTNSSHPYALKLRN-RLVIT---------SDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAV  337 (392)
T ss_pred             HHHHHHHHHHHHhcCCcccccccc-ccccC---------CCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEE
Confidence            7888888888874  232322221 11000         01247789999964211        1235665655445444


Q ss_pred             cCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          475 SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       475 s~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ..-+.......|                -+++..||+++...++++.++.+.++|+
T Consensus       338 ~~~~~~~~~~~~----------------~~P~~~iR~~~~~~~t~eei~~~~~~l~  377 (392)
T PLN03227        338 VSTGGHVKKFLQ----------------LVPPPCLRVVANASHTREDIDKLLTVLG  377 (392)
T ss_pred             EecccccCCcCC----------------CCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            211111111011                1235679999988666555555554443

>PRK07324 transaminase; Validated

Probab=99.94  E-value=1.7e-24  Score=227.78  Aligned_cols=282  Identities=16%  Similarity=0.196  Sum_probs=193.2

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEE
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  269 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~  269 (532)
                      +.|+..  .....|++++|++++.   +++++++++++|+..++.+++.+||+|+++.|.|....    ..++..|++++
T Consensus        56 ~~Y~~~--~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v~  129 (373)
T PRK07324         56 LTYGWI--EGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY----DIPESLGAEVD  129 (373)
T ss_pred             ccCCCC--CCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEE
Confidence            455542  2356899999998753   45666666679999999999999999999999997744    34556788887


Q ss_pred             EeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----ccc
Q 009523          270 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL  335 (532)
Q Consensus       270 ~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~l  335 (532)
                      .++.       .|++++++++++ ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    ...
T Consensus       130 ~v~~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~  208 (373)
T PRK07324        130 YWQLKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA  208 (373)
T ss_pred             EEecccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence            7763       278899998877 7999999999999999999   888999999999999999997653221    111


Q ss_pred             c-cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHH-HHHHHHHHH
Q 009523          336 S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRV-QQQNSTALR  410 (532)
Q Consensus       336 ~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~-~~~~~~a~~  410 (532)
                      . ....+++.|+||.+|.+| .+.||+++++++++.++..+.....+.+....+++...++.   +..++ +...++.+.
T Consensus       209 ~~~~~~I~~~s~SK~~~~~G-~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~  287 (373)
T PRK07324        209 DLYEKGISTNSMSKTYSLPG-IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAI  287 (373)
T ss_pred             hccCCEEEEecchhhcCCcc-ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            1 123588999999998665 46799999999999988876544334445555554444432   22222 333456677


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.++|++++.+. +..|.                .|..+++.++.+ .....|.+.+ +..++.+..|..+.        
T Consensus       288 l~~~l~~~~~~~-~~~p~----------------gg~~~~i~~~~~-~~~~~~~~~ll~~~gv~v~pg~~F~--------  341 (373)
T PRK07324        288 LDEWVAKEPRVS-YVKPK----------------AVSTSFVKLDVD-MPSEDFCLKLLKETGVLLVPGNRFD--------  341 (373)
T ss_pred             HHHHHhcCCCce-EECCC----------------ceEEEEEEeCCC-CCHHHHHHHHHHhcCEEEECccccC--------
Confidence            778888776553 23332                244556666532 2344555554 44577777765431        


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHH
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD  524 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~d  524 (532)
                                     .++++|||++.. .+.+.+.
T Consensus       342 ---------------~~~~iRis~~~~-~~~l~~~  360 (373)
T PRK07324        342 ---------------LEGHVRIGYCCD-TETLKKG  360 (373)
T ss_pred             ---------------CCCeEEEEecCC-HHHHHHH
Confidence                           146899999963 3443333

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=2.3e-24  Score=228.65  Aligned_cols=297  Identities=21%  Similarity=0.234  Sum_probs=206.8

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          200 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ....+++++.+++++|++   ++++++++++++.+++.++    +++||+|+++++.|++....+....+..|++++.++
T Consensus        61 ~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~  140 (403)
T TIGR01979        61 TEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIP  140 (403)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEe
Confidence            345778999999999975   4556666669998888764    578999999999999877666566667899988886


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECC
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA  346 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~  346 (532)
                      .     .|++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. ..+....++|+++.|+
T Consensus       141 ~~~~~~~~~~~l~~~i~~-~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~  219 (403)
T TIGR01979       141 LDDDGTLDLDDLEKLLTE-KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSG  219 (403)
T ss_pred             cCCCCCCCHHHHHHHhcc-CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEec
Confidence            4     278999999987 79999999999999999999999999999999999999987653 2444567899999999


Q ss_pred             ccccCCCCCcEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHHH-----HHH
Q 009523          347 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----HLR  400 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~tl-----~~r  400 (532)
                      ||++|+.|   .|+++.++++++.+.....                     ...++.+....+.+..+++.+     ...
T Consensus       220 ~K~~gp~G---~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~  296 (403)
T TIGR01979       220 HKMYGPTG---IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENI  296 (403)
T ss_pred             ccccCCCC---ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHH
Confidence            99998665   6888888887766532110                     001223333333333333322     223


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      .++..+.++++.+.|++.++++ +..|.-+            ...++++.|.+++.  ....+.+.|+..++.++.|..+
T Consensus       297 ~~~~~~l~~~l~~~l~~~~g~~-~~~~~~~------------~~~~~~v~~~~~~~--~~~~~~~~L~~~gI~v~~g~~~  361 (403)
T TIGR01979       297 EAHEHELTAYALERLGEIPGLR-IYGPRDA------------EDRGGIISFNVEGV--HPHDVGTILDEEGIAVRSGHHC  361 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEE-EeCCCCc------------cccCceEEEEeCCc--CHHHHHHHHhhCCEEEcchhhh
Confidence            3455566777777787777654 3333211            01367899998752  2345666777778888877542


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +.   |           ....+|. ++.||||++..++++.++.+.++|+
T Consensus       362 ~~---~-----------~~~~~~~-~~~iRiS~~~~~t~~di~~l~~~l~  396 (403)
T TIGR01979       362 AQ---P-----------LMRRFGV-PATCRASFYIYNTEEDIDALVEALK  396 (403)
T ss_pred             hH---H-----------HHHHhCC-CCEEEEEeccCCCHHHHHHHHHHHH
Confidence            21   1           1122333 4789999998766666666666654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=1.4e-24  Score=227.76  Aligned_cols=293  Identities=20%  Similarity=0.243  Sum_probs=206.7

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhcc---CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~---~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      ....++++.+++++|.+   +.++++||++++..++.++..   +||+|++++++|++....+....+..|.++++++.+
T Consensus        43 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  122 (373)
T cd06453          43 DAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD  122 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence            44667889999999976   566677778999999999887   899999999999987655555556778888888643


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCcc
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  348 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~sK  348 (532)
                           |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+....|+|+++.|++|
T Consensus       123 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  201 (373)
T cd06453         123 DDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHK  201 (373)
T ss_pred             CCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccc
Confidence                 78999999987 799999999999999999999999999999999999999765432 33345689999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHhhh--------------------c-CCCccHHHHHHHHHhHHH-----HHHHHH
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------L-GGALNPNAAYLIIRGMKT-----LHLRVQ  402 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~~~--------------------~-G~~~~~~~a~l~l~~l~t-----l~~r~~  402 (532)
                      ++++.+   +|+++.++++++.++.....                    + .++.+......+..+++.     +..+.+
T Consensus       202 ~~~~~g---~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~  278 (373)
T cd06453         202 MLGPTG---IGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAA  278 (373)
T ss_pred             ccCCCC---cEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            999854   68898988888766543210                    0 112222222222223332     233344


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      +..+.++++.+.|++++.+..+ .+.              ...+++++|.+++  ....++.+.|+..++.++.|..+..
T Consensus       279 ~~~~~~~~l~~~l~~~~~~~~~-~~~--------------~~~~~~~~~~~~~--~~~~~i~~~l~~~gi~i~~g~~~~~  341 (373)
T cd06453         279 HEHELTAYALERLSEIPGVRVY-GDA--------------EDRAGVVSFNLEG--IHPHDVATILDQYGIAVRAGHHCAQ  341 (373)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEe-CCc--------------cccCCeEEEEECC--cCHHHHHHHHHHCCEEeccCccchh
Confidence            5556777788888877765433 111              0135688998864  2344566666656777766543210


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                         |           ....+|. ++.||+|++..++++.++.+.++|
T Consensus       342 ---~-----------~~~~~~~-~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         342 ---P-----------LMRRLGV-PGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             ---H-----------HHHHhCC-CCeEEEEecCCCCHHHHHHHHhhC
Confidence               0           1112332 478999999988888777777664

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=5.2e-24  Score=222.99  Aligned_cols=223  Identities=13%  Similarity=0.228  Sum_probs=171.0

Q ss_pred             CCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          194 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       194 ~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+...+|...++++++|+++|.++++++++|++++..++.+++++||+|+++.+.|.+.+.    .+...|++++.++.
T Consensus        37 ~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~  112 (361)
T cd06452          37 RLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYV----AAERAGLNVREVPN  112 (361)
T ss_pred             ccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHH----HHHhcCCEEEEEec
Confidence            34445678999999999999999888888888899999999999999999999999887653    35667888887753


Q ss_pred             -------CCHHHHHHhhcC------CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCC
Q 009523          274 -------ADMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGA  339 (532)
Q Consensus       274 -------~dle~Le~al~~------~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~ga  339 (532)
                             .|++++++++++      .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+. .....+.|+
T Consensus       113 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~  192 (361)
T cd06452         113 TGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGA  192 (361)
T ss_pred             CCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCC
Confidence                   378899988862      268999999999999999999999999999999999999987543 345566789


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--------cCCCccHHHHHHHHHhHHHHH---HHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTA  408 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--------~G~~~~~~~a~l~l~~l~tl~---~r~~~~~~~a  408 (532)
                      |+++.|+||++++++  .+|+++++++++++++.....        .+++......+.+..+++.+.   .+..+..+++
T Consensus       193 d~~~~s~~K~l~~~~--~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  270 (361)
T cd06452         193 DFIVGSGHKSMAASA--PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKA  270 (361)
T ss_pred             CEEEecCCccccCCC--CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998654  578999999998887654422        222222222333334443332   3334445667


Q ss_pred             HHHHHHHHhCCCce
Q 009523          409 LRMAKILEAHPKVK  422 (532)
Q Consensus       409 ~~la~~L~~~p~v~  422 (532)
                      +++.+.|+++++++
T Consensus       271 ~~l~~~L~~l~g~~  284 (361)
T cd06452         271 RWFVAELEKIEGIK  284 (361)
T ss_pred             HHHHHHHhcCCCeE
Confidence            88899999887764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.94  E-value=4.1e-24  Score=226.00  Aligned_cols=225  Identities=13%  Similarity=0.184  Sum_probs=177.4

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .|.+++...|..+++|+.+|+++|.++++++++|++++..++.+++++||+|+++.+.|.+.+..    ++..|+++.++
T Consensus        54 ~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~----~~~~G~~~~~v  129 (387)
T PRK09331         54 PGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVA----AERAGLNVREV  129 (387)
T ss_pred             ccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH----HHHcCCEEEEE
Confidence            45666777889999999999999999999999999999999999999999999999999886532    45568888888


Q ss_pred             CC-------CCHHHHHHhhcCC------CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-ccccccc
Q 009523          272 DP-------ADMEGLEAALNNN------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSL  337 (532)
Q Consensus       272 d~-------~dle~Le~al~~~------~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~  337 (532)
                      +.       .|++++++++++.      ++++|++++|+|++|.+.|+++|.++|+++|+++++|++++.+. +.+...+
T Consensus       130 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~  209 (387)
T PRK09331        130 PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKL  209 (387)
T ss_pred             eCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHc
Confidence            75       3789999988642      58999999999999999999999999999999999999988653 4555677


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--------hcCCCccHHHHHHHHHhHHH---HHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGALNPNAAYLIIRGMKT---LHLRVQQQNS  406 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--------~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~  406 (532)
                      |+|+++.|+||++++++  .+|++++++++++.++....        .+|..+.+...+.++.+++.   ...+++++.+
T Consensus       210 g~D~~~~s~~K~l~~~~--~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~  287 (387)
T PRK09331        210 GADFIVGSGHKSMAASA--PSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVK  287 (387)
T ss_pred             CCCEEEeeCcccccCCC--CEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998664  47899999988887655322        12333332223333333332   2345566678


Q ss_pred             HHHHHHHHHHhCCCce
Q 009523          407 TALRMAKILEAHPKVK  422 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~  422 (532)
                      +++++.+.|.+.+++.
T Consensus       288 ~~~~l~~~L~~l~g~~  303 (387)
T PRK09331        288 KARWFVDELEKIEGFK  303 (387)
T ss_pred             HHHHHHHHHhcCCCEE
Confidence            8889999999887764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=4e-24  Score=224.77  Aligned_cols=282  Identities=15%  Similarity=0.168  Sum_probs=198.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----  274 (532)
                      +|....+++.+|+++|.+.++++++|++++..++.+++++||+|+++.+.|.+.+.    .++..|+++..++.+     
T Consensus        50 ~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~----~~~~~g~~~~~~~~~~~~~~  125 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYV----AAERAGLNVKEVPHTGHPEY  125 (370)
T ss_pred             chHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHH----HHHHcCCEEEEEecCCcccC
Confidence            45788899999999999999999999999999999999999999999999877552    346678888888754     


Q ss_pred             --CHHHHHHhhcC------CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEEC
Q 009523          275 --DMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  345 (532)
Q Consensus       275 --dle~Le~al~~------~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S  345 (532)
                        |+++|++++++      .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+. .......++|+++.|
T Consensus       126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s  205 (370)
T TIGR02539       126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGS  205 (370)
T ss_pred             CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEee
Confidence              89999998853      258999999999999999999999999999999999999988753 334445678999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhhc--------CCCccHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHH
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL--------GGALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAKI  414 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~--------G~~~~~~~a~l~l~~l~tl~~---r~~~~~~~a~~la~~  414 (532)
                      +||++++++  ..|++++++++++.++.....+        +.......+..+...++....   ++.+..++++++.+.
T Consensus       206 ~sK~~~~~g--~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~  283 (370)
T TIGR02539       206 GHKSMAASG--PCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAE  283 (370)
T ss_pred             CcccccCCC--CEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998654  3689999999998887654321        111111122222333433222   233445666788888


Q ss_pred             HHhCCCceEE-eCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HHHHHHHHHHcCCCcee-ecCCCccccccc
Q 009523          415 LEAHPKVKRV-HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKFIDALKIPYIA-PSFGGCESIVDQ  485 (532)
Q Consensus       415 L~~~p~v~~V-~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~~~~~~~l~~L~~~~i~-vs~G~~~sl~~~  485 (532)
                      |++.+ +..+ .+|.                ..+++.+.+++.       ......+.+.|...++. +..         
T Consensus       284 L~~~g-~~~~~~~~s----------------~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---------  337 (370)
T TIGR02539       284 LEDIG-FIQLGQKPK----------------EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---------  337 (370)
T ss_pred             HHhCC-cEEEccCCC----------------cCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC---------
Confidence            88763 3221 1121                256777776531       11234566666655542 111         


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEe--c-CCCHHHHHHHHHHHHhh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSF--G-VEDFEDLKADVLQALHA  531 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSv--G-~ed~~dli~dL~~AL~~  531 (532)
                                       | .+++||+|+  + .|+.+.+++.|++.+++
T Consensus       338 -----------------~-~~~~iRis~~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       338 -----------------G-QTKYFKLSVYGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             -----------------C-cceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence                             1 146899997  3 24556666666666543

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=6.9e-24  Score=221.35  Aligned_cols=283  Identities=14%  Similarity=0.196  Sum_probs=196.1

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+++....||+++|++++.+ +.|++++|+ +++..++.+++++||+|++++|+|....    ..++..|.++..++
T Consensus        53 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~  128 (351)
T PRK14807         53 VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPVK  128 (351)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEee
Confidence            46677777889999999999863 455565665 8899999999999999999999997533    34455677777765


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc---c-ccCCcEEE
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L-SLGADLVL  343 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~---l-~~gaDivv  343 (532)
                      .     .|++++++++++.++++|++++|+||||.+.+.+++.+++++++.++|+|++|........   . .....+++
T Consensus       129 ~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~  208 (351)
T PRK14807        129 LKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVL  208 (351)
T ss_pred             cCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEE
Confidence            3     3689999998754799999999999999999999999999998889999999864321111   1 12346899


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--TLHLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~--tl~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      .|+||.+|.+| ++.||+++++++++.++.....  ...+.....++...++  .+..+++...++++.+.+.|++.+++
T Consensus       209 ~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~  285 (351)
T PRK14807        209 RTLSKAFGLAG-LRVGYAVANENILKYLNLVKSP--YNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGI  285 (351)
T ss_pred             ecchHhcccch-hceeeeecCHHHHHHHHHccCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999998555 5689999999999988765432  2234454444444443  23444455556677778888766654


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHh
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK  501 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~  501 (532)
                      . + +|.                .|+++++.++.    ...+.+.|...++.+..++..                     
T Consensus       286 ~-~-~~~----------------~~~~~~i~~~~----~~~~~~~l~~~gV~v~~~~~~---------------------  322 (351)
T PRK14807        286 K-V-YPS----------------KTNFILVKFKD----ADYVYQGLLERGILVRDFSKV---------------------  322 (351)
T ss_pred             E-E-CcC----------------CccEEEEEcCC----HHHHHHHHHHCCEEEEECCCC---------------------
Confidence            2 2 221                35678888863    234444444446655432110                     


Q ss_pred             cCCCCCeEEEEecCC-CHHHHHHHHHHH
Q 009523          502 YGIMDNLVRFSFGVE-DFEDLKADVLQA  528 (532)
Q Consensus       502 ~gi~~~~IRlSvG~e-d~~dli~dL~~A  528 (532)
                      .+ .++++||+++.. +.+.+++.|++.
T Consensus       323 ~~-~~~~iRis~~~~~~~~~l~~~l~~~  349 (351)
T PRK14807        323 EG-LEGALRITVSSCEANDYLINGLKEL  349 (351)
T ss_pred             CC-CCCeEEEEcCCHHHHHHHHHHHHHh
Confidence            01 246899999963 345556665553

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.93  E-value=8e-24  Score=222.14  Aligned_cols=301  Identities=19%  Similarity=0.233  Sum_probs=209.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +..+++++.+++++|.+   +++++++|++++..++.+++++||+|+++.+.|+++...+....+..|++++.++.+   
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            66788999999999974   356667778999999999999999999999999887766655666678888887642   


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCccccC
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~lg  351 (532)
                        |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. ..+....|+|+++.|++|+++
T Consensus       124 ~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~  202 (376)
T TIGR01977       124 LISPERIKRAIKT-NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL  202 (376)
T ss_pred             CcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEeccccccc
Confidence              79999999977 79999999999999999999999999999999999999987553 344445789999999999988


Q ss_pred             CCCCcEEEEEEeChHHHHHHHHH----------------hhhcCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIRNL----------------HHVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALR  410 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~~----------------~~~~G~~~~~~~a~l~l~~l~tl-----~~r~~~~~~~a~~  410 (532)
                      ++.+ .|++++.++..+..+...                .+...++.+....+.+..+++.+     ....++..+.+++
T Consensus       203 ~p~g-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       203 GPQG-TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             CCCC-ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            7643 244555544322211110                00011223333333333344433     2234555677788


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|++.+++. +..|.-+.            ..+++++|.+++  .....+.+.|... ++.++.|..++...+    
T Consensus       282 ~~~~l~~~~~~~-~~~~~~~~------------~~~~~v~~~~~~--~~~~~~~~~L~~~~gi~v~~g~~~~~~~~----  342 (376)
T TIGR01977       282 LLNGLREINKVK-IYGPADPA------------NRVGVVSFTVEG--IDSEEVADILDEKFDIATRTGLHCAPLAH----  342 (376)
T ss_pred             HHHHHhcCCCeE-EeCCCCcc------------ccCCeEEEEECC--CCHHHHHHHHhccCCEEEEcccccchHHH----
Confidence            888888777653 33221110            125689999875  2345566666554 778877755432211    


Q ss_pred             cccCCCHHHHHhcC-CCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          490 SYWDLSQSERLKYG-IMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       490 s~~~~~~~~~~~~g-i~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                                ..+| ..++.||+|++..++++.++.+.++|+.+
T Consensus       343 ----------~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~~  376 (376)
T TIGR01977       343 ----------KTIGTFATGTIRLSLGYFNTEEEIEKLLEALSEI  376 (376)
T ss_pred             ----------HHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhhC
Confidence                      1122 24579999999999999999999888753

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.93  E-value=4.3e-24  Score=225.22  Aligned_cols=305  Identities=17%  Similarity=0.181  Sum_probs=201.1

Q ss_pred             CCchhHHHHHHH---HHhhhCC---CcEEEeCCHHHHHHHHHHHhc-----cC-CCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          198 YGNPTTVVVEEK---MSALEGA---ESTVIMASGMSASTVMLLALV-----PA-GGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       198 ~~~p~~~~Le~~---lA~l~ga---~~~i~~sSG~~Ai~~al~all-----~~-Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      |+.+....+++.   +++..++   ++.++++++++++..++.++.     ++ ||+|+++...|++....+ ..++..|
T Consensus        36 ~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~-~~~~~~G  114 (382)
T TIGR03403        36 FGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATC-AFLESLG  114 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHH-HHHHHCC
Confidence            333444445544   4444553   345566666799999888762     45 478999999998876654 3456789


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCC
Q 009523          266 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGA  339 (532)
Q Consensus       266 v~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~ga  339 (532)
                      +++..++.+     |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ .+.+..++|+
T Consensus       115 ~~v~~v~~~~~g~~d~~~l~~~i~~-~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~  193 (382)
T TIGR03403       115 VEVTYLPINEQGTITAEQVREAITE-KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGV  193 (382)
T ss_pred             CEEEEEecCCCCCCCHHHHHHhccc-CCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCC
Confidence            999888653     78999999987 6999999999999999999999999999999999999997754 4456667899


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHH-HH-HHH---HhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLV-TQ-IRN---LHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR  410 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li-~~-l~~---~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~  410 (532)
                      |+++.|+||++|++|   .|+++.+++.. .. +..   ......++++....+.+..+++.    +....++..+.+++
T Consensus       194 D~~~~s~~K~~gp~G---~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~  270 (382)
T TIGR03403       194 DFLSFSAHKFHGPKG---VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDR  270 (382)
T ss_pred             CEEEEcchhhCCCCc---eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999988776   46665544321 01 100   00011233444433333334432    23333445566677


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|.+.+++. +..|.  .           ...++++.|.+++  .....++..|...+|.++.|..++..       
T Consensus       271 l~~~L~~~~~~~-~~~~~--~-----------~~~~~~~~~~~~~--~~~~~~~~~L~~~gI~v~~g~~c~~~-------  327 (382)
T TIGR03403       271 LEDALLELPDVF-VVGDR--E-----------HRVPNTILISIKG--VEGEAMLWDLNKAGIAASTGSACASE-------  327 (382)
T ss_pred             HHHHHhcCCCEE-EECCC--C-----------CCcCCEEEEEeCC--CCHHHHHHhhccCCEEEEchhccCCC-------
Confidence            777777777664 32221  0           0134577888875  22345566677779999988654311       


Q ss_pred             ccCCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          491 YWDLSQSERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                       ..-+...+..+|..    .+.||+|++..++++.++.+.++|++
T Consensus       328 -~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~  371 (382)
T TIGR03403       328 -DLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKK  371 (382)
T ss_pred             -CCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHH
Confidence             11123445566653    47899999998877777777777753

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.8e-24  Score=223.75  Aligned_cols=287  Identities=18%  Similarity=0.253  Sum_probs=214.6

Q ss_pred             CCCCCCchhHHHHHHHHHhhhC-CC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          194 EYGRYGNPTTVVVEEKMSALEG-AE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       194 ~Y~R~~~p~~~~Le~~lA~l~g-a~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .+.||+++...+|++++++++| .+ +.|+.+.|+ +.|..++++++.+||.|++..|+|...    ...++..|.++..
T Consensus        50 ~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y----~~~a~~~g~~~~~  125 (356)
T COG0079          50 KLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMY----EIAAQLAGAEVVK  125 (356)
T ss_pred             hhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHH----HHHHHhcCCeEEE
Confidence            5789999999999999999999 43 577777887 999999999999999999999999753    3456677988888


Q ss_pred             eCC----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCCcccccc----cCCc
Q 009523          271 IDP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALS----LGAD  340 (532)
Q Consensus       271 vd~----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~~~~~l~----~gaD  340 (532)
                      ++.    .|++.+.+++++ ++++||+++||||||...+.++|.+++...  +.+||+||+|..+.......    ...-
T Consensus       126 v~~~~~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nl  204 (356)
T COG0079         126 VPLKEFRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNL  204 (356)
T ss_pred             ecccccccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCE
Confidence            876    578899998887 799999999999999999988888887754  88999999987765422222    2234


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII---RGMKTLHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l---~~l~tl~~r~~~~~~~a~~la~~L~~  417 (532)
                      +++.||||.||-.| ++.|+.++++++++.+++.+..+..  +.....++.   +.-+.+....++..+.++++.+.|++
T Consensus       205 ivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~vr~p~~v--~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~  281 (356)
T COG0079         205 IVLRTFSKAFGLAG-LRVGYAIANPELIAALNKVRPPFNV--SSPALAAAIAALRDADYLEESVERIREERERLYAALKA  281 (356)
T ss_pred             EEEEecHHhhhcch-hceeeccCCHHHHHHHHHhcCCCCC--CHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999776 5688999999999999998876653  333333332   33345666677777888999999998


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      ++ +..| +|.                .++++.+.++. .. ...+.+.|...|+-+..-+.                  
T Consensus       282 ~~-~~~v-~pS----------------~aNFvlv~~~~-~~-~~~l~~~L~~~giivR~~~~------------------  323 (356)
T COG0079         282 LG-LFGV-FPS----------------QANFVLVRVPD-AE-AAALAEALLKKGILVRDCSS------------------  323 (356)
T ss_pred             CC-CCee-cCC----------------CCcEEEEECCC-cc-HHHHHHHHHHCCEEEEeCCC------------------
Confidence            76 4333 333                36788888864 23 44566666555655442110                  


Q ss_pred             HHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009523          498 ERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALH  530 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~AL~  530 (532)
                          .+..++++|+|+|.+ +-+.+++.|.+.+.
T Consensus       324 ----~~~~~~~lRitvgt~een~~ll~AL~~~~~  353 (356)
T COG0079         324 ----VGLLPGYLRITVGTPEENDRLLAALREVLK  353 (356)
T ss_pred             ----CCCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Confidence                123468999999974 34666777666654

>PLN02721 threonine aldolase

Probab=99.93  E-value=6.5e-24  Score=220.65  Aligned_cols=285  Identities=19%  Similarity=0.211  Sum_probs=199.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~-~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      +.+|...+||++||+++|.+..+++++|++++..++.++++ +||+|++++++|...+... ..+...|+++..++.   
T Consensus        37 ~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~  115 (353)
T PLN02721         37 GYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNED  115 (353)
T ss_pred             CCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcC
Confidence            44677899999999999998889999999888888888777 9999999999986544210 134556888887763   


Q ss_pred             --CCHHHHHHhhcC------CCeeEEEEeCC-CCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCC------Cccccc
Q 009523          274 --ADMEGLEAALNN------NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------LNQKAL  335 (532)
Q Consensus       274 --~dle~Le~al~~------~~tklV~lesP-~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~------~~~~~l  335 (532)
                        .|++++++++++      .++++|+++++ +||+|.+.|   +++|.++|+++|+++|+|+++...      ......
T Consensus       116 ~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~  195 (353)
T PLN02721        116 GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL  195 (353)
T ss_pred             CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHH
Confidence              379999999972      16899999885 678999987   679999999999999999985422      111222


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~--~~a~l~l~~l~tl~~r~~~~~~~a~~la~  413 (532)
                      ..++|.++.|+||+++++   .||++++++++++.+.......++.+..  ..++....+++....++++..++++.+.+
T Consensus       196 ~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  272 (353)
T PLN02721        196 VKAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAE  272 (353)
T ss_pred             hhhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999865   3556778889888877665544443322  22333444566655566666677888899


Q ss_pred             HHHhCCCceE-EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          414 ILEAHPKVKR-VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       414 ~L~~~p~v~~-V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .|++.+++.. +..|                 .++++++.++.. ......+.+.|...++.+..+              
T Consensus       273 ~L~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~--------------  321 (353)
T PLN02721        273 GLNQIKGLRVNVAAV-----------------ETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPG--------------  321 (353)
T ss_pred             HHHhCCCcEEecCCc-----------------cceEEEEEccCCccccHHHHHHHHHhCCcEEecC--------------
Confidence            9988766532 2111                 256888888632 123456666776556555433              


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecCCCH----HHHHHHHHHHHh
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGVEDF----EDLKADVLQALH  530 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~ed~----~dli~dL~~AL~  530 (532)
                                   ..+.||++++....    +++++.|++++.
T Consensus       322 -------------~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        322 -------------NSSRIRVVTHHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             -------------CCceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence                         14589999985444    444455554443

>PRK07179 hypothetical protein; Provisional

Probab=99.93  E-value=9.2e-24  Score=224.71  Aligned_cols=283  Identities=16%  Similarity=0.170  Sum_probs=201.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      +.+...+||++||+++|.+.+++++||++|+..+++++..+||+|+++...|.+....    +...|+++..++..|+++
T Consensus        97 ~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~  172 (407)
T PRK07179         97 DDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEG----VRAAGAQAHPFRHNDVDH  172 (407)
T ss_pred             CchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHH----HHHCCCeEEEecCCCHHH
Confidence            3468899999999999999999999999999999999999999999999888775432    344577887777789999


Q ss_pred             HHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-------ccccc--cCCcEEEECCccc
Q 009523          279 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------QKALS--LGADLVLHSATKF  349 (532)
Q Consensus       279 Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-------~~~l~--~gaDivv~S~sK~  349 (532)
                      |+++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+..       .....  .++|+++.|++|.
T Consensus       173 l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~  252 (407)
T PRK07179        173 LRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKA  252 (407)
T ss_pred             HHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHh
Confidence            99999763589999999999999999999999999999999999999864321       11111  2469999999999


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCCCceEE
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKVKRV  424 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p~v~~V  424 (532)
                      +++.    +|++++++++++.++....  .++++..+..+..+...++   ....+.++..++.+++.+.|++. ++. +
T Consensus       253 ~g~~----~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v  326 (407)
T PRK07179        253 FAGR----AGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYN-I  326 (407)
T ss_pred             hhcc----CeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCC-C
Confidence            9864    6889999888777764332  2455555554443333333   33345566777888888888764 221 1


Q ss_pred             eCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCC
Q 009523          425 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI  504 (532)
Q Consensus       425 ~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi  504 (532)
                      .                  +.+++++++++. ......+.+.|...++.++      ..+.|..              ..
T Consensus       327 ~------------------~~~~i~~l~~~~-~~~~~~~~~~L~~~GI~~~------~~~~p~~--------------~~  367 (407)
T PRK07179        327 R------------------SESQIIALETGS-ERNTEVLRDALEERNVFGA------VFCAPAT--------------PK  367 (407)
T ss_pred             C------------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEe------eecCCCC--------------CC
Confidence            1                  135688888753 2344556666655554322      1122321              01


Q ss_pred             CCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          505 MDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       505 ~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ..+.||||++...+++.++.+.++|+
T Consensus       368 ~~~~lRis~~~~~t~edi~~~~~~l~  393 (407)
T PRK07179        368 NRNLIRLSLNADLTASDLDRVLEVCR  393 (407)
T ss_pred             CCceEEEEECCCCCHHHHHHHHHHHH
Confidence            25789999998665555555555543

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.93  E-value=7.4e-24  Score=224.85  Aligned_cols=269  Identities=14%  Similarity=0.109  Sum_probs=185.9

Q ss_pred             hhHHHHHHHHHhhhC------C-C-cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSALEG------A-E-STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l~g------a-~-~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +....|+++||++++      . . +.|++++| ++++..++.+++++||+|++++|+|+...    ..++..|+++..+
T Consensus        69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v  144 (399)
T PRK07681         69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYE----TGIQMAGATSYYM  144 (399)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchH----HHHHhcCCEEEEE
Confidence            456678888887763      1 2 45555555 59999999999999999999999998754    3455678888777


Q ss_pred             CCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----ccc-
Q 009523          272 DPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL-  335 (532)
Q Consensus       272 d~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~~l-  335 (532)
                      +.+       |++++++++.+ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......     ... 
T Consensus       145 ~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~  223 (399)
T PRK07681        145 PLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLS  223 (399)
T ss_pred             ecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhh
Confidence            532       68889888876 6999999999999999998   667888899999999999998643211     111 


Q ss_pred             ---ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHH
Q 009523          336 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA  408 (532)
Q Consensus       336 ---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a  408 (532)
                         .....+++.|+||.+|.+| ++.||+++++++++.+...........+......+...++.    +....+...++.
T Consensus       224 ~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  302 (399)
T PRK07681        224 VPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERR  302 (399)
T ss_pred             CCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence               1124588999999998665 56899999999999888766544444555544444444432    333334445666


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccccccCc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa  487 (532)
                      +.+.+.|+++ ++ .+..|.                .|.++|+.++.+ .....|.+.+.. .++.+..|..+..     
T Consensus       303 ~~l~~~L~~~-g~-~~~~p~----------------~g~f~~~~l~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~-----  358 (399)
T PRK07681        303 DTLVDGFRTF-GW-NVDKPA----------------GSMFVWAEIPKG-WTSLSFAYALMDRANVVVTPGHAFGP-----  358 (399)
T ss_pred             HHHHHHHHHC-CC-cccCCC----------------eeeEEEEECCCC-CCHHHHHHHHHHhCCEEEeCChhhCc-----
Confidence            7777888775 33 222221                467889998743 223445555433 5777777644310     


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                                      -.++++||+++.
T Consensus       359 ----------------~~~~~iRis~~~  370 (399)
T PRK07681        359 ----------------HGEGFVRIALVQ  370 (399)
T ss_pred             ----------------CCCCeEEEEecC
Confidence                            024799999995

>PLN02651 cysteine desulfurase

Probab=99.93  E-value=3.2e-24  Score=224.89  Aligned_cols=299  Identities=17%  Similarity=0.187  Sum_probs=204.9

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      +++......+++++++++++|++  +.+++++|++++++++..+    .++||+|+++...|+++...+.. +...|+++
T Consensus        37 ~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~-~~~~g~~v  115 (364)
T PLN02651         37 YGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRH-LQQEGFEV  115 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHH-HHhcCCEE
Confidence            34444566888999999999974  4566667779988777654    47899999999999887655543 34678888


Q ss_pred             EEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEE
Q 009523          269 TVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLV  342 (532)
Q Consensus       269 ~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDiv  342 (532)
                      +.++.     .|++++++++++ ++++|++++++|+||.+.|+++|.++||++|+++++|++++.+ .+++..++|+|++
T Consensus       116 ~~v~~~~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~  194 (364)
T PLN02651        116 TYLPVKSDGLVDLDELAAAIRP-DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLM  194 (364)
T ss_pred             EEEccCCCCcCCHHHHHHhcCC-CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEE
Confidence            88764     278999999987 6999999999999999999999999999999999999998765 4566777899999


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHh-------hhcCCCccHHHHHHHHHhHHHHHHHH----HHHHHHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMKTLHLRV----QQQNSTALRM  411 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~~G~~~~~~~a~l~l~~l~tl~~r~----~~~~~~a~~l  411 (532)
                      +.|.||++|++|   .|+++.+++....+....       ....++.+....+.+..+++.+...+    ++..+..+++
T Consensus       195 ~~s~hK~~gp~G---~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l  271 (364)
T PLN02651        195 SISGHKIYGPKG---VGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERL  271 (364)
T ss_pred             EechhhhCCCCc---eEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999876665   677776665444332211       11223444444444444554433222    3334455566


Q ss_pred             HHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          412 AKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       412 a~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      .+.|++ .|+++ +..|.-+   .        ....++++|.+++  .....+...|..  |.++.|..++..    .. 
T Consensus       272 ~~~l~~~~~~~~-i~~~~~~---~--------~~~~~i~~~~~~~--~~~~~~~~~L~~--i~v~~g~~c~~~----~~-  330 (364)
T PLN02651        272 LNGLRAKLGGVR-VNGPRDP---E--------KRYPGTLNLSFAY--VEGESLLMGLKE--VAVSSGSACTSA----SL-  330 (364)
T ss_pred             HHHHHhhCCCEE-EECCCCc---c--------cCcCCEEEEEeCC--CCHHHHHHHhCC--EEEEchhhcCCC----CC-
Confidence            666654 45653 3333211   0        1135799999975  234456666654  889988764321    11 


Q ss_pred             ccCCCHHHHHhcCCC----CCeEEEEecCCCHHHHH
Q 009523          491 YWDLSQSERLKYGIM----DNLVRFSFGVEDFEDLK  522 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~----~~~IRlSvG~ed~~dli  522 (532)
                         .+.....++|+.    .+.||+|++..++++.|
T Consensus       331 ---~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~di  363 (364)
T PLN02651        331 ---EPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEV  363 (364)
T ss_pred             ---CcCHHHHHcCCChHHhCceEEEEcCCCCCHHHc
Confidence               122344566654    47999999999887654

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=221.43  Aligned_cols=294  Identities=16%  Similarity=0.214  Sum_probs=197.3

Q ss_pred             CCCCCch-hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNP-TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p-~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +..|+.+ ...+|++++|+++|.  ++++++++|++|+..++.+++.+||+|++++|.|....    ..++..|.++..+
T Consensus        59 ~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v  134 (380)
T PRK06225         59 YCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEV  134 (380)
T ss_pred             CCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHHhCceEEee
Confidence            3445554 368899999999986  35777778889999999999999999999999998643    3445667777766


Q ss_pred             CC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc
Q 009523          272 DP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS  336 (532)
Q Consensus       272 d~--------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~  336 (532)
                      +.        .|++++++.+++ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|.....    .....
T Consensus       135 ~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  213 (380)
T PRK06225        135 PIYSEECNYKLTPELVKENMDE-NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYA  213 (380)
T ss_pred             ccccccCCccCCHHHHHhhcCC-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcC
Confidence            52        378899999887 6999999999999999986   77889999999999999999642111    01112


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHH-HHHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQ-QNSTALRMA  412 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~-~~~~a~~la  412 (532)
                      ....+++.|+||++|.+| ...|++++++++++.++..... ....+...+..+...+..   +..++.+ ..++...+.
T Consensus       214 ~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~  291 (380)
T PRK06225        214 PEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIK  291 (380)
T ss_pred             CCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            234688899999997565 5689999999998888765421 122344443333333322   2222222 234455566


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccccc
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW  492 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~  492 (532)
                      +.|++.+++....+|.                .|+++++.++........|.+.|...++.+..|..++    +      
T Consensus       292 ~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~----~------  345 (380)
T PRK06225        292 EAVDEIEGVFLPVYPS----------------HGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTS----K------  345 (380)
T ss_pred             HHHHhCcCCccccCCC----------------CCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccC----c------
Confidence            7777655432111221                3678899886421234556666655677776663321    0      


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009523          493 DLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA  531 (532)
Q Consensus       493 ~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~~  531 (532)
                                ...++++|+|++.  |+.+++++.|.+++++
T Consensus       346 ----------~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~  376 (380)
T PRK06225        346 ----------RFGDRYIRVSFSIPREQVEVFCEEFPDVVET  376 (380)
T ss_pred             ----------CCCCceEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                      0125799999997  3456667777776654

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=6.6e-24  Score=223.93  Aligned_cols=281  Identities=14%  Similarity=0.160  Sum_probs=194.5

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+++...+|+++||+++|.+ +.|++++|+ +++..++.+++++||+|++++|.|+...    ..++..|+++..++.
T Consensus        81 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~  156 (380)
T PLN03026         81 YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPR  156 (380)
T ss_pred             ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeec
Confidence            4577788889999999999863 455566665 8999999999999999999999996432    344557888877754


Q ss_pred             -----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc----ccc-ccCCcEEE
Q 009523          274 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SLGADLVL  343 (532)
Q Consensus       274 -----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~----~~l-~~gaDivv  343 (532)
                           .|+++|+++++..++++|++++|+||||.+.+.+++.++++.. +++|+||+|......    ... .....+++
T Consensus       157 ~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~  235 (380)
T PLN03026        157 TPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVL  235 (380)
T ss_pred             CCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEE
Confidence                 2688999988333799999999999999999999999999865 899999997643211    111 22456899


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      .|+||.+|..| .+.|++++++++++.+......++  .+.....++...++   .+....+...+++..+.+.|++++.
T Consensus       236 ~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~~~~~--~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  312 (380)
T PLN03026        236 RTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAKQPYN--VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPF  312 (380)
T ss_pred             ecchHhhcCcc-ccceeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999998665 568999999999998877654332  44444444444442   2333334445667778888887654


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +. + +|.                .|+++++.++.+ .....|.+.|...++.+..+..      +              
T Consensus       313 ~~-~-~p~----------------~~~f~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~------~--------------  353 (380)
T PLN03026        313 LE-P-YPS----------------DANFILCRVTSG-RDAKKLKEDLAKMGVMVRHYNS------K--------------  353 (380)
T ss_pred             Ce-E-CCC----------------CCeEEEEECCCC-CCHHHHHHHHHHCCeEEEECCC------C--------------
Confidence            32 2 332                467889988642 2234555565555666654321      0              


Q ss_pred             hcCCCCCeEEEEecCC-CHHHHHHHHH
Q 009523          501 KYGIMDNLVRFSFGVE-DFEDLKADVL  526 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~e-d~~dli~dL~  526 (532)
                        + .++++|||+|.. +.+.+++.|+
T Consensus       354 --~-~~~~lRis~~~~~~~~~l~~al~  377 (380)
T PLN03026        354 --E-LKGYIRVSVGKPEHTDALMEALK  377 (380)
T ss_pred             --C-CCCEEEEecCCHHHHHHHHHHHH
Confidence              1 256999999953 2344444443

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.93  E-value=6.7e-24  Score=223.38  Aligned_cols=300  Identities=17%  Similarity=0.159  Sum_probs=203.9

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          200 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all---~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ....+++++.+++++|++  +++++++|++++++++..++   ++||+|+++..+|++....+. .++..|++++.++. 
T Consensus        41 ~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~  119 (379)
T TIGR03402        41 GKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQ-HLEKQGYKVTYLPVD  119 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHH-HHHHcCCEEEEEccC
Confidence            345778889999999974  46677778899999888764   467899999999988765553 34557999888864 


Q ss_pred             ----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcc
Q 009523          274 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  348 (532)
Q Consensus       274 ----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK  348 (532)
                          .|++++++++++ ++++|++++++||||.+.|+++|.++|+++|+++++|++++.+ .+.+....++|+++.|.+|
T Consensus       120 ~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K  198 (379)
T TIGR03402       120 EEGRLDLEELRAAITD-DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK  198 (379)
T ss_pred             CCCcCCHHHHHHhcCC-CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHH
Confidence                378999999987 6999999999999999999999999999999999999998765 3345556799999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHh-------hhcCCCccHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHh
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMKTLHLRV----QQQNSTALRMAKILEA  417 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~~G~~~~~~~a~l~l~~l~tl~~r~----~~~~~~a~~la~~L~~  417 (532)
                      ++|++|   .|+++.+++..  +....       ....++.+....+.+..+++.+...+    ++..+..+++.+.|.+
T Consensus       199 ~~gp~G---~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~  273 (379)
T TIGR03402       199 LHGPKG---VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA  273 (379)
T ss_pred             cCCCCc---eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            777666   67776665431  11100       01123333333333333443332223    3444555666666664


Q ss_pred             -CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCH
Q 009523          418 -HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ  496 (532)
Q Consensus       418 -~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~  496 (532)
                       .+.+... .+.  .           ...+++++|.+++.  ....+...|+..+|.++.|..++...        ..+.
T Consensus       274 ~~~~~~~~-~~~--~-----------~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~v~~g~~c~~~~--------~~~~  329 (379)
T TIGR03402       274 RIPDARLN-GDP--T-----------KRLPNTVNISFEYI--EGEAILLLLDMEGICASSGSACTSGS--------LEPS  329 (379)
T ss_pred             hCCCEEEe-CCC--c-----------cCCCCEEEEEecCC--CHHHHHHhhccCCEEEEchhhcCCCC--------CCcC
Confidence             5655322 111  0           01245777777642  24567777877899999886643211        1123


Q ss_pred             HHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          497 SERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       497 ~~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ..+..+|..    .+.||+|++..++++.|+.+.++|+
T Consensus       330 ~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~  367 (379)
T TIGR03402       330 HVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLP  367 (379)
T ss_pred             HHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            445566654    4789999999877777777766665

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.93  E-value=5.8e-24  Score=224.01  Aligned_cols=311  Identities=17%  Similarity=0.199  Sum_probs=207.7

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC-CcEEEe-CCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA-ESTVIM-ASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga-~~~i~~-sSG~~Ai~~al~all----~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      |..++......+.+|+.+|+++|+ ++.|++ +++++++..++.+++    ++||+|+++...|++....+ ..++..|+
T Consensus        35 ~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~-~~~~~~g~  113 (381)
T PRK02948         35 HDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYF-QSLESQGY  113 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHH-HHHHhCCC
Confidence            333444445678899999999986 345555 455799988887775    57899999999998876655 34566788


Q ss_pred             EEEEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCc
Q 009523          267 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGAD  340 (532)
Q Consensus       267 ~v~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaD  340 (532)
                      ++..++.     .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|+++..+ ...+..++++|
T Consensus       114 ~v~~v~~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d  192 (381)
T PRK02948        114 TVTEIPVDKSGLIRLVDLERAITP-DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGID  192 (381)
T ss_pred             EEEEEeeCCCCCCCHHHHHHhcCC-CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCC
Confidence            8887763     378999999987 6999999999999999999999999999999999999886543 33444567899


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHH-HHHHHH----HhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRM  411 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~l-i~~l~~----~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~~l  411 (532)
                      +++.|+||++|++|   .|+++.++++ +..+..    ......++.+......+..+++    .+....++..++++++
T Consensus       193 ~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l  269 (381)
T PRK02948        193 SLSVSAHKIYGPKG---VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYF  269 (381)
T ss_pred             EEEecHHhcCCCCc---EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998776   5777666553 111110    0011123344444333333333    3344455666777788


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .+.|++.+ +. +...+   ++.+        ..+.+++|.+++-  ....+...|...+|.++.|..++....      
T Consensus       270 ~~~L~~~~-~~-v~~~~---~~~~--------~~~~i~~~~~~~~--~~~~~~~~l~~~gI~v~~g~~c~~~~~------  328 (381)
T PRK02948        270 LEQIQTLP-LP-IEVEG---HSTS--------CLPHIIGVTIKGI--EGQYTMLECNRRGIAISTGSACQVGKQ------  328 (381)
T ss_pred             HHHHhcCC-CC-EEEeC---CCcc--------CcCCEEEEEeCCC--CHHHHHHhcccCCEEEEchHhcCCCCC------
Confidence            88887763 21 21111   0111        1356788888751  235556667777899988765432111      


Q ss_pred             cCCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          492 WDLSQSERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       492 ~~~~~~~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                        -+...+.++|.+    ++.||+|++..++++.++.+.++|++
T Consensus       329 --~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~  370 (381)
T PRK02948        329 --EPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALET  370 (381)
T ss_pred             --CCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence              122334445532    47999999988777777777777653

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=223.89  Aligned_cols=286  Identities=15%  Similarity=0.150  Sum_probs=194.6

Q ss_pred             CCCchhHHHHHHHHHhhh----C---C--CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          197 RYGNPTTVVVEEKMSALE----G---A--ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~----g---a--~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      +|+......|++++|+++    |   .  ++.|++++|+ +++..++.+++++||+|+++.|.|.....    .++..|.
T Consensus        77 ~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~g~  152 (410)
T PRK06290         77 GYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGT----HTKYYGG  152 (410)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHH----HHHHcCC
Confidence            344456778888888875    3   2  2356676776 99999999999999999999999987543    4455688


Q ss_pred             EEEEeCCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-c--
Q 009523          267 TATVIDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K--  333 (532)
Q Consensus       267 ~v~~vd~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-~--  333 (532)
                      ++..++.+       |++++++++.+ ++++|++++|+||||.+++   +++|.++|+++|++||+||+|...... .  
T Consensus       153 ~v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~  231 (410)
T PRK06290        153 EVYNLPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPL  231 (410)
T ss_pred             EEEEEecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCc
Confidence            87777532       68888888876 6999999999999999998   567888899999999999997653211 1  


Q ss_pred             c---c--ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHH
Q 009523          334 A---L--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQN  405 (532)
Q Consensus       334 ~---l--~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~  405 (532)
                      +   +  ..+.+|++.|+||.+|.+| .+.|++++++++++.+...........+.....++...++   .+....++..
T Consensus       232 s~~~~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~  310 (410)
T PRK06290        232 SFLSVPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYS  310 (410)
T ss_pred             ChhcCCCccccEEEEeechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence            1   1  1235699999999998665 5689999999999888776554443333333333334443   2333344455


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH------HHHHHHHHHcCCCc-eeecCCC
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL------TATIKFIDALKIPY-IAPSFGG  478 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~------~~~~~~l~~L~~~~-i~vs~G~  478 (532)
                      +++..+.+.|+++ ++. +..|.                .|.++|+.++++.      .....|.+.|...+ +.+..|+
T Consensus       311 ~~~~~l~~~L~~~-g~~-~~~p~----------------g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~  372 (410)
T PRK06290        311 RRLDKLVKILNEV-GFK-AEMPG----------------GTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWD  372 (410)
T ss_pred             HHHHHHHHHHHhC-CCe-ecCCC----------------eeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCc
Confidence            6777788888875 332 22121                2446678886421      13445555554332 2222221


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHhh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG-----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG-----~ed~~dli~dL~~AL~~  531 (532)
                      .                         .++++||+++     .|+.+.+++.|.++|..
T Consensus       373 ~-------------------------~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~  405 (410)
T PRK06290        373 D-------------------------AGHFLRFSVTFEAKDEEEEDRILEEIKRRLSD  405 (410)
T ss_pred             c-------------------------ccCeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence            1                         1368999997     35677888999988875

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.93  E-value=2.6e-23  Score=219.82  Aligned_cols=284  Identities=18%  Similarity=0.161  Sum_probs=195.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+...+||+++|+++|.+++++++||++|+..++.+++++||+|+++++.|++....+ ..+   +.....+...|+++|
T Consensus        82 ~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~-~~~---~~~~~~~~~~d~~~l  157 (393)
T TIGR01822        82 QDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGV-RLC---KAKRYRYANNDMADL  157 (393)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH-Hhc---CCceEEeCCCCHHHH
Confidence            5678999999999999999999999999999999999999999999999999866544 222   333334456789999


Q ss_pred             HHhhcC---C--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-cc------cc--ccCCcEEEEC
Q 009523          280 EAALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QK------AL--SLGADLVLHS  345 (532)
Q Consensus       280 e~al~~---~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~------~l--~~gaDivv~S  345 (532)
                      ++++++   .  ++++|++++++||+|.+.|+++|+++|++||+++|+|++++.++. ..      ..  ..++|+++.|
T Consensus       158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s  237 (393)
T TIGR01822       158 EAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT  237 (393)
T ss_pred             HHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEE
Confidence            988874   1  589999999999999999999999999999999999999864321 10      11  2257999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +||+++|.   .+|++++++++++.++....  .++++.++.....+...++.+   ....++..++.+++.+.|++. +
T Consensus       238 ~sK~l~g~---r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  313 (393)
T TIGR01822       238 LGKALGGA---SGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA-G  313 (393)
T ss_pred             ChHHhhCC---CcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-C
Confidence            99999864   47999999999888876322  233344444333334444433   233445556777777777763 3


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +. + .+.                .+.++.+.+.+ ......|.+.|...++.++ |..+     |..      +     
T Consensus       314 ~~-~-~~~----------------~~~~~~i~~~~-~~~~~~l~~~L~~~gI~v~-~~~~-----~~~------~-----  357 (393)
T TIGR01822       314 FD-I-KPA----------------DHPIIPVMLYD-AVLAQRFARRLLEEGIYVT-GFFY-----PVV------P-----  357 (393)
T ss_pred             CC-C-CCC----------------CCCEEEEEeCC-HHHHHHHHHHHHHCCeeEe-eeCC-----CCC------C-----
Confidence            21 1 111                13466676653 2345667777655576665 3221     110      0     


Q ss_pred             hcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          501 KYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                         -....||+|++..++++.++.+.++|.
T Consensus       358 ---~~~~~iRis~~~~~t~edi~~~~~~l~  384 (393)
T TIGR01822       358 ---KGQARIRVQISAAHTEEQLDRAVEAFT  384 (393)
T ss_pred             ---CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence               013469999987665555555554443

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.93  E-value=1.4e-23  Score=222.18  Aligned_cols=295  Identities=19%  Similarity=0.170  Sum_probs=200.1

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-  274 (532)
                      +..+++++.+++++|.+  +.++++++++++..++.++   +++||+|++.++.|.++...+...++..|+++.+++.+ 
T Consensus        60 ~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~  139 (397)
T TIGR01976        60 QVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDE  139 (397)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccc
Confidence            45789999999999974  3555556668887766664   68999999999999987766655667789998887542 


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcc
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  348 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK  348 (532)
                           |++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|+++..+ ...+..++++|+++.|+||
T Consensus       140 ~~~~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K  218 (397)
T TIGR01976       140 ATGELHPDDLASLLSP-RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYK  218 (397)
T ss_pred             cCCCcCHHHHHHhcCC-CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechh
Confidence                 68999999987 6999999999999999999999999999999999999997543 2334456789999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHhhh----------cCCCccHHHHHHHHHhHHHHH-------------------H
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLHHV----------LGGALNPNAAYLIIRGMKTLH-------------------L  399 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~~~----------~G~~~~~~~a~l~l~~l~tl~-------------------~  399 (532)
                      ++|++    .|++++++++++.+......          ..++.+....+.+..+++.+.                   .
T Consensus       219 ~~g~~----~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~  294 (397)
T TIGR01976       219 FFGPH----MGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQA  294 (397)
T ss_pred             hcCCc----eEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHH
Confidence            99643    68888898887766532111          112233222222223333221                   1


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCc
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      ..++..+.++++.+.|++.+.++ +..+. .  +         ...++++.|.+++  .....+.+.|...++.++.|..
T Consensus       295 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~-~--~---------~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~  359 (397)
T TIGR01976       295 IDAYENRLAEYLLVGLSDLPGVT-LYGVA-R--L---------AARVPTVSFTVHG--LPPQRVVRRLADQGIDAWAGHF  359 (397)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEE-EeCCC-C--c---------cCCCceEEEEeCC--cCHHHHHHHHHHCCeEEEeCcc
Confidence            12223345566666676665543 32221 0  0         0135688888864  2234566677666877776643


Q ss_pred             ccccccCccccccCCCHHHHHhcCCC--CCeEEEEecCCCHHHHHHHHHHHH
Q 009523          480 ESIVDQPAIMSYWDLSQSERLKYGIM--DNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       480 ~sl~~~pa~~s~~~~~~~~~~~~gi~--~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      +.              .......|++  ++.||+|++..++++.++.+.++|
T Consensus       360 ~~--------------~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       360 YA--------------VRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             ch--------------HHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            32              0111223443  468999999988887777776654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.93  E-value=2.1e-23  Score=220.04  Aligned_cols=284  Identities=16%  Similarity=0.172  Sum_probs=190.6

Q ss_pred             CCCCCchh-HHHHHHHHHhhhC----C----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          195 YGRYGNPT-TVVVEEKMSALEG----A----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       195 Y~R~~~p~-~~~Le~~lA~l~g----a----~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      +.+|+.+. ...|++.++++++    .    ++.+++++| ++++..++..++++||+|++++|+|+....    .++..
T Consensus        60 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~----~~~~~  135 (383)
T TIGR03540        60 NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRI----GTLFA  135 (383)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHH----HHHhc
Confidence            34555543 4678888888653    2    234555555 599999999999999999999999987543    34556


Q ss_pred             CcEEEEeCCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          265 GITATVIDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       265 Gv~v~~vd~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                      |.++..++.+       |++++++.+.+ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....   
T Consensus       136 G~~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~  214 (383)
T TIGR03540       136 GGEPYEMPLKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY  214 (383)
T ss_pred             CCEEEEEecCcccCCccCHHHHHhhccc-cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC
Confidence            8777766532       67889888876 7999999999999999998   67888999999999999999763221   


Q ss_pred             ----ccccc--cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHH
Q 009523          332 ----QKALS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRV  401 (532)
Q Consensus       332 ----~~~l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~  401 (532)
                          ...+.  ....+++.|+||.+|.+| ++.||+++++++++.+.......+...+......+...++    .+....
T Consensus       215 ~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  293 (383)
T TIGR03540       215 KAPSFLEVDGAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIR  293 (383)
T ss_pred             CCcCcccCCCcccCEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHH
Confidence                11111  124588899999998665 5689999999999888776554443444443333333332    233334


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcc
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCE  480 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~  480 (532)
                      +...+++..+.+.|+++ ++. +..|.                .|.++|+.++.+ .....|.+.+ +..++.+..|..+
T Consensus       294 ~~~~~~~~~~~~~L~~~-~~~-~~~~~----------------~~~~~~~~l~~~-~~~~~~~~~ll~~~gi~v~~g~~f  354 (383)
T TIGR03540       294 KIYQRRRDLLLEALKKI-GID-VEKPK----------------ATFYVWVPVPEG-YTSAEFAARLLEETGVVVTPGVGF  354 (383)
T ss_pred             HHHHHHHHHHHHHHHhC-CCE-ecCCC----------------cceEEEEECCCC-CCHHHHHHHHHHHCCEEEecchhh
Confidence            44557777888888876 332 22221                245689998743 2345566654 4457777766443


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      ..                     ..++++|||++.. .+++.+.|
T Consensus       355 ~~---------------------~~~~~~Ris~~~~-~~~l~~~l  377 (383)
T TIGR03540       355 GE---------------------YGEGYIRISLTVP-DERLEEAV  377 (383)
T ss_pred             Cc---------------------cCCCeEEEEecCC-HHHHHHHH
Confidence            10                     0247899999953 34433333

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.93  E-value=2.8e-23  Score=215.42  Aligned_cols=286  Identities=20%  Similarity=0.198  Sum_probs=203.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      .++..+.+++.+++++|.++.+++++|++++..++.+++++||+|+++++.|.+...    .+...|+++..++..|+++
T Consensus        44 ~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~  119 (349)
T cd06454          44 TSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIID----GIRLSGAKKRIFKHNDMED  119 (349)
T ss_pred             CchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHH----HHHHcCCceEEecCCCHHH
Confidence            478889999999999999889999999999998888889999999999999987553    3445688888887778889


Q ss_pred             HHHhhcC----CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc---------ccccccCCcEEEEC
Q 009523          279 LEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---------QKALSLGADLVLHS  345 (532)
Q Consensus       279 Le~al~~----~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~---------~~~l~~gaDivv~S  345 (532)
                      +++++++    .++++|++++|+||+|.+.|+++|+++|+++|+++|+|++++.+..         ......+.|+++.|
T Consensus       120 le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s  199 (349)
T cd06454         120 LEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGT  199 (349)
T ss_pred             HHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEee
Confidence            9988864    3589999999999999999999999999999999999999764321         11234578999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +||.+++.    +|++++++++++.++.....  .++..++.....+...++.+   ..+.++..++++.+.+.|+++ +
T Consensus       200 ~sK~~~~~----gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g  274 (349)
T cd06454         200 LGKAFGAV----GGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-G  274 (349)
T ss_pred             chhhhccc----CCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-C
Confidence            99999863    58888888888877654332  23345555555555555543   344556667777777777764 2


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +..+ .+     +           .+.++++.++. .....++.+.|...++.++.++...   .               
T Consensus       275 ~~~~-~~-----~-----------~~~~~~~~~~~-~~~~~~~~~~L~~~gI~~~~~~~~~---~---------------  318 (349)
T cd06454         275 FPVG-GS-----P-----------SHIIPPLIGDD-PAKAVAFSDALLERGIYVQAIRYPT---V---------------  318 (349)
T ss_pred             Cccc-CC-----C-----------CCcEEEEeCCC-hHHHHHHHHHHHhCCceEEEecCCc---c---------------
Confidence            2111 01     0           12234443432 2345666666665566665432100   0               


Q ss_pred             hcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          501 KYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                        ...++.|||+++....++.++.+.++|+.
T Consensus       319 --~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  347 (349)
T cd06454         319 --PRGTARLRISLSAAHTKEDIDRLLEALKE  347 (349)
T ss_pred             --CCCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence              01147899999987777777777777764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.93  E-value=8.6e-24  Score=226.62  Aligned_cols=286  Identities=16%  Similarity=0.180  Sum_probs=195.7

Q ss_pred             CCCchh-HHHHHHHHHhhhC----CCcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          197 RYGNPT-TVVVEEKMSALEG----AESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~g----a~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .|+.+. ...|++.++++++    .++.|++++| ++|+..++.++++|||.|++++|+|....    ..++..|+++..
T Consensus       116 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~----~~~~~~g~~~~~  191 (431)
T PRK15481        116 LYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSI----NMLRYAGFSASP  191 (431)
T ss_pred             hcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCeEEe
Confidence            345443 3678888888865    2334555555 59999999999999999999999998754    345566888777


Q ss_pred             eCC----CCHHHHHHhhcCCCeeEEEEe-CCCCCCCcccCHH---HHHHHHHhC-CCEEEEECCCCCCCc---cccc--c
Q 009523          271 IDP----ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLCHKK-GAIVCIDGTFATPLN---QKAL--S  336 (532)
Q Consensus       271 vd~----~dle~Le~al~~~~tklV~le-sP~NptG~v~dl~---~I~~la~~~-gi~lIvDet~a~~~~---~~~l--~  336 (532)
                      ++.    .|+++|++++++ ++++++++ +|+||||.+++.+   +|.++|+++ ++++|+||+|.....   ..++  .
T Consensus       192 v~~~~~g~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~  270 (431)
T PRK15481        192 VSVDAEGMQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQT  270 (431)
T ss_pred             eccCCCCCCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCC
Confidence            754    368999999876 68998987 9999999999976   899999999 999999999764321   1111  1


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALR  410 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a~~  410 (532)
                      ....+++.|+||.++ +| .+.||+++++++++.+...........+...+.++...++.      +....+...++.+.
T Consensus       271 ~~~vi~~~SfSK~~~-~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~  348 (431)
T PRK15481        271 TQRWALIRSVSKALG-PD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQK  348 (431)
T ss_pred             CCCEEEEeeeccccC-CC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            234589999999999 55 57889999999998887654443334566655555555432      22233444566677


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|+++ ++. +..|.                .|.++|+.++.+   ...+.+.+...++.+..|..+..   +    
T Consensus       349 ~~~~L~~~-~~~-~~~p~----------------gg~f~~~~l~~~---~~~~~~~l~~~gV~v~pg~~f~~---~----  400 (431)
T PRK15481        349 LARALQQY-GIA-IPSPG----------------DGLNLWLPLDTD---SQATALTLAKSGWLVREGEAFGV---S----  400 (431)
T ss_pred             HHHHHHHc-CCc-cccCC----------------CeEEEEEECCCC---HHHHHHHHHHCCcEEecCCcccc---C----
Confidence            77888765 221 21221                577899998743   24455555556777777754321   0    


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH  530 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed---~~dli~dL~~AL~  530 (532)
                                   -..+++|||++..+   .++.++.|.+++.
T Consensus       401 -------------~~~~~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        401 -------------APSHGLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             -------------CCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence                         01368999999744   3445555555543

>PRK08960 hypothetical protein; Provisional

Probab=99.93  E-value=3.9e-23  Score=218.39  Aligned_cols=284  Identities=15%  Similarity=0.121  Sum_probs=189.7

Q ss_pred             chhHHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          200 NPTTVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~g------a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .+....|++.+|++++      .  ++.++++++++++..++.+++++||+|++++|+|......+    ...|.++..+
T Consensus        68 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~~~~~v  143 (387)
T PRK08960         68 ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFL----RLVEGAAQLV  143 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCCeEEEE
Confidence            3456778888888863      2  34555556669999999999999999999999999866443    3345565555


Q ss_pred             CC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCcc----ccccc
Q 009523          272 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQ----KALSL  337 (532)
Q Consensus       272 d~-------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~~----~~l~~  337 (532)
                      +.       .|++++++++++ +++++++++|+||||.+++.+   +|+++|+++|+++|+|++|......    .....
T Consensus       144 ~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~  222 (387)
T PRK08960        144 PVGPDSRYQLTPALVERHWNA-DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEV  222 (387)
T ss_pred             ecCcccCCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhc
Confidence            32       368899998887 689999999999999999854   6777789999999999997643211    11122


Q ss_pred             -CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHH
Q 009523          338 -GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRM  411 (532)
Q Consensus       338 -gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~l  411 (532)
                       ...+++.|+||.+|.+| .+.||+++++++++.++..........+...+.++...+.     .+....++..++.+.+
T Consensus       223 ~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l  301 (387)
T PRK08960        223 DDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFL  301 (387)
T ss_pred             cCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH
Confidence             23478899999998666 5689999999999888876655544455554444433332     2333334445667778


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCcccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      .+.|++++ +..+.+|.                .|.++|++++........|.+.+ +..++.+..|..++.        
T Consensus       302 ~~~L~~~~-~~~~~~p~----------------g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------  356 (387)
T PRK08960        302 LPALRELG-FGIAVEPQ----------------GAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR--------  356 (387)
T ss_pred             HHHHHhcC-CcCCcCCC----------------eeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCC--------
Confidence            88887753 21112221                36678888863111234555553 445777777754321        


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHH
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQ  527 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~  527 (532)
                                  +..++++||+++. +.+++.+.+++
T Consensus       357 ------------~~~~~~iRi~~~~-~~~~l~~al~~  380 (387)
T PRK08960        357 ------------HQAGQHVRFAYTQ-SLPRLQEAVER  380 (387)
T ss_pred             ------------CCCCCeEEEEecC-CHHHHHHHHHH
Confidence                        0124699999997 45555555443

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2.7e-23  Score=219.49  Aligned_cols=286  Identities=12%  Similarity=0.130  Sum_probs=190.9

Q ss_pred             CCCCchh-HHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          196 GRYGNPT-TVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~g------a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      .+|+++. ...|++++|++++      .  ++.++++++++|+..++.+++++||+|+++.|+|......    +...|.
T Consensus        60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g~  135 (384)
T PRK06348         60 TRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQ----IEMVGG  135 (384)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHH----HHHcCC
Confidence            4455554 4678888888762      2  3455566666999999999999999999999999886543    344566


Q ss_pred             EEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc---c
Q 009523          267 TATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K  333 (532)
Q Consensus       267 ~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~---~  333 (532)
                      ++..++.       .|+++|++++++ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|......   .
T Consensus       136 ~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~  214 (384)
T PRK06348        136 KPIILETYEEDGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV  214 (384)
T ss_pred             EEEEecCCcCcCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc
Confidence            6666542       378999998876 6999999999999999997   667888899999999999998754211   1


Q ss_pred             c---cc--cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH----HHHHHHH
Q 009523          334 A---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL----HLRVQQQ  404 (532)
Q Consensus       334 ~---l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl----~~r~~~~  404 (532)
                      +   +.  .+..+++.|+||.++.+| ++.||+++++++++.++........+.++.....+...+...    ....+..
T Consensus       215 ~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  293 (384)
T PRK06348        215 PMATLAGMPERTITFGSFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEF  293 (384)
T ss_pred             chhhcCCCcCcEEEEecchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            1   11  234689999999998555 568999999999888877665444444555544444444322    2222333


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCccccc
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIV  483 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~  483 (532)
                      .++.+.+.+.|++.+++ .+..|.                .|.++|++++........|.+.+ +..++.+..|..+.. 
T Consensus       294 ~~r~~~~~~~L~~~~~~-~~~~p~----------------gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-  355 (384)
T PRK06348        294 QKRLEYAYKRIESIPNL-SLHPPK----------------GSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE-  355 (384)
T ss_pred             HHHHHHHHHHHhcCCCc-eeccCC----------------eeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhcc-
Confidence            45566677778765543 222221                34467888863112234455544 345777777754320 


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL  526 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~  526 (532)
                                          ..+++|||+++. +.+++.+.++
T Consensus       356 --------------------~~~~~iRi~~~~-~~~~l~~al~  377 (384)
T PRK06348        356 --------------------SGEGYIRLACTV-GIEVLEEAFN  377 (384)
T ss_pred             --------------------CCCCeEEEEecC-CHHHHHHHHH
Confidence                                124789999985 5555544443

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=219.44  Aligned_cols=282  Identities=19%  Similarity=0.280  Sum_probs=196.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +.+|+++...+|++.+|+++|.+  +.|++++|+ +++..++.+++++||+|+++.|+|....    ..++..|+++..+
T Consensus        57 ~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i  132 (356)
T PRK04870         57 LNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEFVGV  132 (356)
T ss_pred             cccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEEEEe
Confidence            34556666789999999999863  356666666 8899999999999999999999998643    4456678888887


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc---c-cccCCcEE
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LSLGADLV  342 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~---~-l~~gaDiv  342 (532)
                      +.     .|+++|++++++.++++|++++|+||||.+++.+++.++++..++++|+|++|.......   . ......++
T Consensus       133 ~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~  212 (356)
T PRK04870        133 PLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLV  212 (356)
T ss_pred             cCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEE
Confidence            64     368999999865479999999999999999999988888877789999999976432111   1 12234589


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      +.|+|| ++.+| .+.|++++++++++.++......  ..+....+.+...+   +.+...+++..++++.+.+.|++.+
T Consensus       213 ~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~~~~--~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  288 (356)
T PRK04870        213 MRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVRPPY--NVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALP  288 (356)
T ss_pred             Eecchh-hhhHH-HhhhhhhCCHHHHHHHHHccCCC--cCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 66555 45789999999998887654322  34444333333333   3344445556677778888888776


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      ++. + +|.                .|+++++.++ +   ...+.+.|...++.+..|..+.                  
T Consensus       289 ~~~-~-~~~----------------~~~~~~~~~~-~---~~~~~~~l~~~gI~v~~~~~f~------------------  328 (356)
T PRK04870        289 GVT-V-FPS----------------AANFILVRVP-D---AAAVFDGLKTRGVLVKNLSGMH------------------  328 (356)
T ss_pred             CcE-E-CCC----------------CCeEEEEECC-C---HHHHHHHHHHCCEEEEECCCCC------------------
Confidence            652 2 231                3668999886 2   2345556666677776654321                  


Q ss_pred             HhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          500 LKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                         +..++++|||++..   +..+.|.++|+
T Consensus       329 ---~~~~~~iRis~~~~---~~~~~l~~al~  353 (356)
T PRK04870        329 ---PLLANCLRVTVGTP---EENAQFLAALK  353 (356)
T ss_pred             ---CCCCCeEEEeCCCH---HHHHHHHHHHH
Confidence               01257999999952   22344444544

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.93  E-value=1e-23  Score=218.48  Aligned_cols=283  Identities=17%  Similarity=0.209  Sum_probs=184.3

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.||++|...+|++++|+++|. ...|++++|+ +++..++. ++++|+ |++.+|+|....    ..++..|+++..++
T Consensus        34 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~----~~~~~~G~~v~~vp  107 (332)
T PRK06425         34 ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEYK----GYAFTHGIRISALP  107 (332)
T ss_pred             cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHHH----HHHHHcCCeEEEEe
Confidence            5789999999999999999997 3456565565 89988886 567775 666689998644    45566788888876


Q ss_pred             CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCccc--c-c----ccCCcEE
Q 009523          273 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQK--A-L----SLGADLV  342 (532)
Q Consensus       273 ~~dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~~--~-l----~~gaDiv  342 (532)
                      .++.+...+.++..++++|++++|+||||.+++.   ++|+++|+++|+++|+||+|.......  + .    ..+..++
T Consensus       108 ~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~  187 (332)
T PRK06425        108 FNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVII  187 (332)
T ss_pred             CCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEE
Confidence            5321111222322368999999999999999984   567777889999999999976543211  1 1    1234689


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHH-hHHHH-HHHHHHHHHHHHHHHHHHHhCCC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-GMKTL-HLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~-~l~tl-~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +.|+||.++-+| ++.||+++++++++.+........  .+...+..+.. ..+.+ ....+...++.+.+.+.|+++ +
T Consensus       188 ~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g  263 (332)
T PRK06425        188 GRSLTKILGIPS-LRIGYIATDDYNMKISRKITEPWS--VCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-G  263 (332)
T ss_pred             EeecHHhcCCch-hhheeeecCHHHHHHHHHcCCCCc--cCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence            999999999555 468999999999988876543322  23322222211 11222 222344456677778888775 3


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +. +..|.                .|+++++.++.    ...|.+.+...++.+..|..+.                   
T Consensus       264 ~~-~~~~~----------------~g~f~~~~~~~----~~~~~~~l~~~gi~v~~~~~f~-------------------  303 (332)
T PRK06425        264 FR-AAGDP----------------SANFITFMIPD----AHDFYSYLLKNGILVRLLDDYE-------------------  303 (332)
T ss_pred             CE-ECCCC----------------CceEEEEEcCC----HHHHHHHHHHCCeEEEECCCCC-------------------
Confidence            32 22121                36788998862    3445555544577777664321                   


Q ss_pred             hcCCCCCeEEEEecCC-CHHHHHHHHHHHH
Q 009523          501 KYGIMDNLVRFSFGVE-DFEDLKADVLQAL  529 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~e-d~~dli~dL~~AL  529 (532)
                        +..+++||||+|.. +.+.+++.|++.+
T Consensus       304 --~~~~~~iRis~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        304 --CLGEQYIRIAIRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             --CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence              11257999999974 4455666665544

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.93  E-value=2.2e-24  Score=230.84  Aligned_cols=212  Identities=23%  Similarity=0.303  Sum_probs=178.8

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCC---CcchHHHHHHhcccCCcEEEEeCC---C
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC---YRKTRIFIETVLPKMGITATVIDP---A  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~---y~~t~~~~~~~l~~~Gv~v~~vd~---~  274 (532)
                      +..+.+|+.+++++|++++++++||++|+.+++. .+.+||+||+++..   |+++..+ ...++..|+++++++.   .
T Consensus       122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~-~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~  199 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALN-TLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRT  199 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCC
Confidence            4578899999999999999999999999988885 46899999999877   5565554 3456778999999976   4


Q ss_pred             CHHHHHHhhcCCCeeEEEEeCCCCCC--C--cccCHHHHHHHHHhCCCEEEEECCCC------------CCCcccccccC
Q 009523          275 DMEGLEAALNNNNVSLFFTESPTNPF--L--RCVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLG  338 (532)
Q Consensus       275 dle~Le~al~~~~tklV~lesP~Npt--G--~v~dl~~I~~la~~~gi~lIvDet~a------------~~~~~~~l~~g  338 (532)
                      +++++++++++ +|++|++++++|++  |  .+.|+++|+++||++|+++++|++.+            .+..+++.+.|
T Consensus       200 ~l~dle~aI~~-~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~G  278 (454)
T TIGR00474       200 HLKDYEDAITE-NTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAG  278 (454)
T ss_pred             CHHHHHHhcCc-CCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcC
Confidence            78999999988 79999999999995  5  58899999999999999999999732            22234677899


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHH----------------HHhhhcCCCccHHHHHHHHHhHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR----------------NLHHVLGGALNPNAAYLIIRGMKTLHLRVQ  402 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~----------------~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~  402 (532)
                      +|++++|++|+++||   .+|+++++++++++++                .+...+|..++|..+|..+++++++..|++
T Consensus       279 aDiv~fSg~K~LgGp---~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~  355 (454)
T TIGR00474       279 VDLVTFSGDKLLGGP---QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPE  355 (454)
T ss_pred             CCEEEecCccccCCC---eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHH
Confidence            999999999999988   4899999988775432                123355677888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC
Q 009523          403 QQNSTALRMAKILEAH  418 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~  418 (532)
                      ++.+++++++++|++.
T Consensus       356 ~~~~~A~~la~~L~~~  371 (454)
T TIGR00474       356 ELRARAERLAKRLKAA  371 (454)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999875

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.93  E-value=5.2e-23  Score=216.57  Aligned_cols=274  Identities=18%  Similarity=0.212  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHhh----hC--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSAL----EG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l----~g--a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ....|++.++++    +|  .  ++.+++++|++++..++.+++++||+|++++|+|....    ..++..|+++..++.
T Consensus        62 G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~  137 (382)
T PRK06108         62 GIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLV----AAPKILGARVVCVPL  137 (382)
T ss_pred             CCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHCCCEEEEeeC
Confidence            345566666665    35  2  45566667779999999999999999999999998654    344566888877654


Q ss_pred             --------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc------ccc-
Q 009523          274 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------KAL-  335 (532)
Q Consensus       274 --------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~------~~l-  335 (532)
                              .|+++|++++++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......      ... 
T Consensus       138 ~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~  216 (382)
T PRK06108        138 DFGGGGWTLDLDRLLAAITP-RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLD  216 (382)
T ss_pred             CCCCCCccCCHHHHHHhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhh
Confidence                    268899998876 6999999999999999986   567888999999999999997643211      001 


Q ss_pred             --c-cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHH
Q 009523          336 --S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA  408 (532)
Q Consensus       336 --~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a  408 (532)
                        . ....+++.|+||.+|.+| .+.|++++++++++.+...........++..+.++...++.    +....++..++.
T Consensus       217 ~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  295 (382)
T PRK06108        217 IAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSR  295 (382)
T ss_pred             cCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence              1 134588999999997655 46799999999998887655433333455544444433332    333344455667


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa  487 (532)
                      +.+.+.|++.+++. +..|.                .|.++++.+++. .....|.+.| +..++.+..|..+.    + 
T Consensus       296 ~~l~~~L~~~~~~~-~~~p~----------------~g~~~~~~l~~~-~~~~~~~~~ll~~~gV~v~pg~~f~----~-  352 (382)
T PRK06108        296 DHLVDALRALPGVE-VAKPD----------------GAMYAFFRIPGV-TDSLALAKRLVDEAGLGLAPGTAFG----P-  352 (382)
T ss_pred             HHHHHHHHhCCCCc-ccCCC----------------eeEEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCchhhC----C-
Confidence            77788887765542 21121                345678888642 2234555554 44577776664321    0 


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL  521 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl  521 (532)
                                      ..++++|||++. +.+++
T Consensus       353 ----------------~~~~~~Ris~~~-~~~~l  369 (382)
T PRK06108        353 ----------------GGEGFLRWCFAR-DPARL  369 (382)
T ss_pred             ----------------CCCCEEEEEecC-CHHHH
Confidence                            125799999998 54443

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.93  E-value=5.2e-23  Score=217.57  Aligned_cols=284  Identities=17%  Similarity=0.181  Sum_probs=197.2

Q ss_pred             hhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .....|++.+|+++    |.    ++.++++++++|+..++.+++++||+|++++|+|....    ..++..|+++..++
T Consensus        68 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~  143 (393)
T PRK05764         68 AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYP----EMVKLAGGVPVFVP  143 (393)
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchH----HHHHHcCCEEEEEe
Confidence            34678889999886    21    34666666679999999999999999999999998754    33455688888776


Q ss_pred             CC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-------cc-
Q 009523          273 PA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-------KA-  334 (532)
Q Consensus       273 ~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-------~~-  334 (532)
                      .+       |++++++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......       .. 
T Consensus       144 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  222 (393)
T PRK05764        144 TGEENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASL  222 (393)
T ss_pred             cCcccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHc
Confidence            43       57899999876 6999999999999999986   778899999999999999997653210       11 


Q ss_pred             --cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHH
Q 009523          335 --LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  408 (532)
Q Consensus       335 --l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a  408 (532)
                        ...+.++++.|+||.++.+| ...|++++++++++.++......+...++..++.+.+.++    .+....++..++.
T Consensus       223 ~~~~~~~~i~~~s~SK~~~~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  301 (393)
T PRK05764        223 SPELRDRTITVNGFSKAYAMTG-WRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERR  301 (393)
T ss_pred             CCCCcCCEEEEecCcccccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence              11246799999999998666 3579999999999998877665555666776666555553    2223334445667


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH----HHHHHHHHc-CCCceeecCCCccccc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT----ATIKFIDAL-KIPYIAPSFGGCESIV  483 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~----~~~~~l~~L-~~~~i~vs~G~~~sl~  483 (532)
                      +.+.+.|++++++. +..|.                .|.++|+.++....    ....+.+.+ +..++.+..|..+.  
T Consensus       302 ~~l~~~L~~~~g~~-~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~--  362 (393)
T PRK05764        302 DLMVDGLNEIPGLE-CPKPE----------------GAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFG--  362 (393)
T ss_pred             HHHHHHHhhCCCCc-ccCCC----------------cceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccC--
Confidence            77788888775542 21111                34567887764211    124454443 44577776664321  


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                                          . +++||||++.  ++.++.++.|.++++
T Consensus       363 --------------------~-~~~vRis~~~~~~~~~~~i~~l~~~~~  390 (393)
T PRK05764        363 --------------------A-PGYVRLSYATSLEDLEEGLERIERFLE  390 (393)
T ss_pred             --------------------C-CCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence                                1 5799999986  333444555555554

>PRK07682 hypothetical protein; Validated

Probab=99.93  E-value=1.3e-23  Score=221.17  Aligned_cols=286  Identities=11%  Similarity=0.134  Sum_probs=192.2

Q ss_pred             chhHHHHHHHHHhhhC----C----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          200 NPTTVVVEEKMSALEG----A----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~g----a----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .+....|++++|++++    .    + +.+++++|++|+.+++.+++++||+|++++|+|+....    .++..|.++..
T Consensus        56 ~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~  131 (378)
T PRK07682         56 NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAP----LVTLAGGVPVP  131 (378)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHH----HHHHcCCEEEE
Confidence            4567788888888774    2    3 35555566799999999999999999999999986543    33445666655


Q ss_pred             eCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc------cc
Q 009523          271 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------KA  334 (532)
Q Consensus       271 vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~------~~  334 (532)
                      ++.       .|+++|++++.+ ++++|++++|+||||.+++   +++|+++|+++++++|+|++|......      ..
T Consensus       132 ~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  210 (378)
T PRK07682        132 VATTLENEFKVQPAQIEAAITA-KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFAS  210 (378)
T ss_pred             eecCCccCCCCCHHHHHhhcCc-ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhh
Confidence            542       378999999877 6999999999999999986   778899999999999999997653311      11


Q ss_pred             cc--cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHH
Q 009523          335 LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA  408 (532)
Q Consensus       335 l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a  408 (532)
                      +.  ....+++.|+||.++.+| .+.|++++++++++.+...........+...+.++.+.++.    +....+...+++
T Consensus       211 ~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  289 (378)
T PRK07682        211 IKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRR  289 (378)
T ss_pred             cccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            11  134689999999998554 45799999999999887765443344455555554544432    333344455677


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa  487 (532)
                      +.+.+.|+++ ++ .+..|.                .|.++|+.++........|.+.+ +..++.+..|..+.    + 
T Consensus       290 ~~~~~~L~~~-~~-~~~~p~----------------g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~----~-  346 (378)
T PRK07682        290 NFFVTSFNEI-GL-TCHVPG----------------GAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFG----E-  346 (378)
T ss_pred             HHHHHHHHHC-CC-ccCCCC----------------eeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhC----c-
Confidence            7788888875 32 122221                34566777742112234566554 34577777764431    0 


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                                      -.++++|||++.+  +.++.++.|.++++
T Consensus       347 ----------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~  375 (378)
T PRK07682        347 ----------------SGEGFIRCSYATSLEQLQEAMKRMKRFVE  375 (378)
T ss_pred             ----------------CCCCeEEEEeCCCHHHHHHHHHHHHHHHh
Confidence                            0257999999973  23344555555554

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2.3e-23  Score=220.43  Aligned_cols=273  Identities=14%  Similarity=0.169  Sum_probs=188.4

Q ss_pred             CchhHHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          199 GNPTTVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~----g--a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      +.+....|++++|+++    |  .  ++.+++++|++|+..++.+++++||+|++++|+|.+...    .+...|+++..
T Consensus        68 ~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~----~~~~~g~~~~~  143 (391)
T PRK08361         68 PNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVE----DAKIAEAKPIR  143 (391)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH----HHHHcCCEEEE
Confidence            3456678899999886    3  2  356666667799999999999999999999999988553    34456777776


Q ss_pred             eCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----cc--
Q 009523          271 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA--  334 (532)
Q Consensus       271 vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~--  334 (532)
                      ++.       .|++++++.+++ ++++|++++|+||||.++|   +++|+++|+++++++|+|++|......    .+  
T Consensus       144 v~~~~~~~~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  222 (391)
T PRK08361        144 IPLREENEFQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMI  222 (391)
T ss_pred             EecCCccCCCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHh
Confidence            643       478999999987 6999999999999999999   788999999999999999998653211    01  


Q ss_pred             -cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHH
Q 009523          335 -LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNST  407 (532)
Q Consensus       335 -l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~  407 (532)
                       .....++++.|+||.+|.+| .+.|++++++++++.+...........+.....++...++.      +....++..++
T Consensus       223 ~~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (391)
T PRK08361        223 KYAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNER  301 (391)
T ss_pred             hcCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence             11235789999999998665 45799999999988887665443344455544444444421      23333444566


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~p  486 (532)
                      ...+.+.|++.+++. +..|.                .|.++|++++........|.+.+ +..++.+..|..+.     
T Consensus       302 ~~~~~~~L~~~~~~~-~~~p~----------------g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~-----  359 (391)
T PRK08361        302 RKLVLKRLKEMPHIK-VFEPK----------------GAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFG-----  359 (391)
T ss_pred             HHHHHHHHHhCCCCe-ecCCC----------------EEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhC-----
Confidence            667788888766542 32221                34568888863111234455544 34567776664421     


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                                      ...++++||+++.
T Consensus       360 ----------------~~~~~~iRi~~~~  372 (391)
T PRK08361        360 ----------------KAGEGYIRISYAT  372 (391)
T ss_pred             ----------------CCCCCEEEEEecC
Confidence                            0124789999996

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=3.7e-23  Score=217.02  Aligned_cols=285  Identities=19%  Similarity=0.258  Sum_probs=196.4

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG-~~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ..+|+++....|+++||+++|.+ +.|++++| ++++.+++.+++.+| |.|++++|.|....    ..++..|.++..+
T Consensus        53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v  128 (364)
T PRK04781         53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEV  128 (364)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence            56788888899999999999863 34555555 599999999999999 79999999886432    3345568888777


Q ss_pred             CCC--------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc-cc---c-c
Q 009523          272 DPA--------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ-KA---L-S  336 (532)
Q Consensus       272 d~~--------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~-~~---l-~  336 (532)
                      +..        |++++++.+...++++|++++|+||||.+++.+++.++++.  +++++|+||+|...... ..   . .
T Consensus       129 ~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~  208 (364)
T PRK04781        129 PLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLAR  208 (364)
T ss_pred             ecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhh
Confidence            531        56777555433379999999999999999998888888764  47899999998754321 11   1 1


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRM  411 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~l  411 (532)
                      ....+++.|+||.+|-+| ++.||+++++++++.+++....++  .+.....++...++     .+..++++..++++.+
T Consensus       209 ~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l  285 (364)
T PRK04781        209 YDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRRCQAPYP--VPTPCAALAEQALSAPALAVTARRVAEVRAERERL  285 (364)
T ss_pred             CCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHhccCCCC--CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            234589999999998555 568999999999999887765443  23333333333332     3344455566777888


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .+.|++++++..+ +|.                .|+++|++++.    ...+.+.+...++.+..|..+     +     
T Consensus       286 ~~~L~~~~~~~~~-~p~----------------~g~f~~~~~~~----~~~~~~~l~~~gI~v~~~~~~-----~-----  334 (364)
T PRK04781        286 HAALAQLPGVRRV-YPS----------------QGNFLLVRFDD----AEAAFQALLAAGVVVRDQRAA-----P-----  334 (364)
T ss_pred             HHHHHhCCCCCeE-CCC----------------CCcEEEEEcCC----HHHHHHHHHHCCeEEeeCCCC-----C-----
Confidence            8889877654333 332                47789999863    234555555567777665321     0     


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHH
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQAL  529 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~ed-~~dli~dL~~AL  529 (532)
                                 + .++++||++|..+ .+.+++.|++..
T Consensus       335 -----------~-~~~~~Ris~~~~~~~~~l~~al~~~~  361 (364)
T PRK04781        335 -----------R-LSDALRITLGTPEQNDRVLAALQRTQ  361 (364)
T ss_pred             -----------C-CCCeEEEeCCCHHHHHHHHHHHHHHH
Confidence                       1 2578999999743 355666665543

>PLN02187 rooty/superroot1

Probab=99.93  E-value=7.4e-23  Score=221.11  Aligned_cols=286  Identities=15%  Similarity=0.142  Sum_probs=188.1

Q ss_pred             chhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          200 NPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~g--------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .+....|++++|++++        .+++++++++++|+..++.++++|||+|++++|+|+...    ..+...|+++..+
T Consensus       107 ~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~~  182 (462)
T PLN02187        107 GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYD----ARAAYSGLEVRKF  182 (462)
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHH----HHHHHcCCEEEEE
Confidence            4456779999999873        134555555569999999999999999999999999743    3345668887776


Q ss_pred             CC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc-c
Q 009523          272 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL-S  336 (532)
Q Consensus       272 d~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l-~  336 (532)
                      +.       .|+++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|.....    ..++ .
T Consensus       183 ~l~~~~~~~~d~~~l~~~~~~-~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~  261 (462)
T PLN02187        183 DLLPEKEWEIDLEGIEAIADE-NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK  261 (462)
T ss_pred             eCccccCCccCHHHHHHhcCC-CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHH
Confidence            53       278999998877 6899999999999999998   67888889999999999999875321    1111 1


Q ss_pred             c---CCcEEEECCccccCCCCCcEEEEEEeC-hH----HHHHHHHHhhhcCC--CccHHHHHHHHHhHH-----HHHHHH
Q 009523          337 L---GADLVLHSATKFIGGHNDVLAGSISGS-GK----LVTQIRNLHHVLGG--ALNPNAAYLIIRGMK-----TLHLRV  401 (532)
Q Consensus       337 ~---gaDivv~S~sK~lgg~gd~~gG~lv~~-~~----li~~l~~~~~~~G~--~~~~~~a~l~l~~l~-----tl~~r~  401 (532)
                      .   ...+++.|+||.|+.+| .+.||++++ ++    +++.+.......+.  ..+.+...++...++     .+....
T Consensus       262 ~~~~~~vi~l~SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~  340 (462)
T PLN02187        262 FASIVPVLTLAGISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKN  340 (462)
T ss_pred             hccCCcEEEEecchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence            1   12588899999998877 467888873 32    23455544443322  224444444444442     234444


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----CHHHHHHHH-HHcCCCceeecC
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG----DLTATIKFI-DALKIPYIAPSF  476 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g----~~~~~~~~l-~~L~~~~i~vs~  476 (532)
                      +...++++.+.+.|++++.+..+..|.                .|.++++.++.    +......++ ..++..++.+..
T Consensus       341 ~~l~~~r~~l~~~L~~~~~~~~~~~P~----------------gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~p  404 (462)
T PLN02187        341 KILKHNVDLVCDRLKDIPCVVCPKKPE----------------SCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLP  404 (462)
T ss_pred             HHHHHHHHHHHHHHhhCCCCcCCCCCC----------------EeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEEC
Confidence            555677788888888765432111221                46678887642    111122333 333556777777


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHh
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALH  530 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~  530 (532)
                      |..+                      | .+++|||+++..+  .++.++.|.+.++
T Consensus       405 G~~f----------------------g-~~~~iRis~~~~~e~l~~al~rL~~~l~  437 (462)
T PLN02187        405 GDAL----------------------G-LKNWMRITIGVEAHMLEDALERLKGFCT  437 (462)
T ss_pred             cccc----------------------C-CCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            7543                      1 1579999999742  2444555555543

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.92  E-value=1.5e-23  Score=217.92  Aligned_cols=280  Identities=18%  Similarity=0.257  Sum_probs=197.0

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+.+...++|+.+|++++.  ++.++++++++++..++.+++++||+|++++|+|....    ..++..|+++..++.
T Consensus        49 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~  124 (346)
T TIGR01141        49 HRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPL  124 (346)
T ss_pred             hcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecc
Confidence            456677778999999999986  34555555568999999999999999999999986432    344567888888764


Q ss_pred             -----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCCcc-cc---c-ccCCcE
Q 009523          274 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-KA---L-SLGADL  341 (532)
Q Consensus       274 -----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~~~-~~---l-~~gaDi  341 (532)
                           .|++++++++.+ ++++|++++|+||||.+.|++++.++|+.+  |+++|+|++|...... .+   . ....++
T Consensus       125 ~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i  203 (346)
T TIGR01141       125 DEDGQLDLEDILVAIDD-KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLI  203 (346)
T ss_pred             CCCCCCCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEE
Confidence                 378999998876 699999999999999999999999999876  9999999997632211 11   1 123458


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ++.|+||++|.+| ...|+++++++++++++.....++  .++.....+...++   .+....++..++++.+.+.|+++
T Consensus       204 ~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  280 (346)
T TIGR01141       204 VLRTLSKAFGLAG-LRIGYAIANAEIIDALNKVRAPFN--LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL  280 (346)
T ss_pred             EEehhhHhhhchh-hhceeeecCHHHHHHHHhccCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999997665 457999999999888876544333  33444333333332   23344555667788888888887


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE  498 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~  498 (532)
                      +++. + .|.                .|.++++++++   ..+.+.+.|...++.+..|..+.                 
T Consensus       281 ~g~~-~-~~~----------------~g~~~~~~~~~---~~~~~~~~L~~~gI~v~~g~~f~-----------------  322 (346)
T TIGR01141       281 PGLE-V-YPS----------------DANFVLIRFPR---DADALFEALLEKGIIVRDLNSYP-----------------  322 (346)
T ss_pred             CCCE-E-CCC----------------cCCEEEEecCC---CHHHHHHHHHHCCeEEEeCCCcC-----------------
Confidence            6653 2 221                35689999874   34556666655677777664321                 


Q ss_pred             HHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          499 RLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       499 ~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                          +. ++++|+|++.   ++.++.+.++|
T Consensus       323 ----~~-~~~iRls~~~---~~~i~~~~~~l  345 (346)
T TIGR01141       323 ----GL-PNCLRITVGT---REENDRFLAAL  345 (346)
T ss_pred             ----CC-CCeEEEecCC---HHHHHHHHHHh
Confidence                12 5789999983   33355555554

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=1.4e-23  Score=219.33  Aligned_cols=284  Identities=14%  Similarity=0.195  Sum_probs=189.6

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .+|+.+...+|++.+|+++|.+  +.+++++|+ +++..++..++++||+|++++|+|....    ..++..|+++..++
T Consensus        64 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~  139 (361)
T PRK00950         64 HRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAK  139 (361)
T ss_pred             cCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEee
Confidence            4566677799999999999863  345547776 7888888888999999999999887533    34556788887775


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc--ccc--ccCCcEEE
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KAL--SLGADLVL  343 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~--~~l--~~gaDivv  343 (532)
                      .     .|++++++++++ ++++|++++|+||||.+.|.+++.++|+++|+++|+|++|......  ..+  .....+++
T Consensus       140 ~~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~  218 (361)
T PRK00950        140 REEDFSLDVDSVLNAITE-KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIG  218 (361)
T ss_pred             cCCCCCcCHHHHHHHhcc-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEE
Confidence            2     368899998876 6999999999999999999999999999999999999998643211  111  12334888


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR  423 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~  423 (532)
                      .|+||.+|.+| .+.|++++++++++.++.....++  .++.....+...++.. ..++++.+..+...+.|.+.-.+ .
T Consensus       219 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~r~~l~~~l~~-~  293 (361)
T PRK00950        219 RTFSKVFGLAG-LRIGYGFVPEWLIDYYMRAKTPFS--LTRLSQAAAIAALSDK-EYIEKSIEHGIKSREYLYNELPF-K  293 (361)
T ss_pred             EeehHhhcCch-hhcchhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhhcCe-e
Confidence            99999998665 467999999999988877654433  3445444444444321 11222222233333333321112 1


Q ss_pred             EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcC
Q 009523          424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG  503 (532)
Q Consensus       424 V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~g  503 (532)
                      + +|.                .|+++++.+++  .....|.+.|...++.+..|..+.                     +
T Consensus       294 ~-~~~----------------~~~~i~~~~~~--~~~~~~~~~l~~~gv~v~~~~~f~---------------------~  333 (361)
T PRK00950        294 V-YPS----------------EANFVLVDVTP--MTAKEFCEELLKRGVIVRDCTSFR---------------------G  333 (361)
T ss_pred             E-CCC----------------cceEEEEECCC--CCHHHHHHHHHHCCEEEeeCCccC---------------------C
Confidence            2 221                35688998853  234556666555577666553210                     1


Q ss_pred             CCCCeEEEEecCC-CHHHHHHHHHHHH
Q 009523          504 IMDNLVRFSFGVE-DFEDLKADVLQAL  529 (532)
Q Consensus       504 i~~~~IRlSvG~e-d~~dli~dL~~AL  529 (532)
                      ..+++||||++.+ +.+.+++.|+++|
T Consensus       334 ~~~~~lRis~~~~~~~~~l~~~L~~il  360 (361)
T PRK00950        334 LGDYYIRVSIGTFEENERFLEILKEIV  360 (361)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHHHh
Confidence            1357899999942 3345555555544

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.92  E-value=5.8e-23  Score=217.68  Aligned_cols=285  Identities=13%  Similarity=0.103  Sum_probs=186.6

Q ss_pred             CCCch-hHHHHHHHHHhhh----CC----CcEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          197 RYGNP-TTVVVEEKMSALE----GA----ESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       197 R~~~p-~~~~Le~~lA~l~----ga----~~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      +|+++ ....|++++|+++    |.    ++.+++ +++++++..++.+++++||+|++++|+|+.....    +...|+
T Consensus        68 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~  143 (394)
T PRK05942         68 GYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRG----PLIAGA  143 (394)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHHcCC
Confidence            34443 3467888888876    42    234554 5556999999999999999999999999885533    344677


Q ss_pred             EEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----
Q 009523          267 TATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       267 ~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----  332 (532)
                      ++..++.       .|++++++.+++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    
T Consensus       144 ~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~  222 (394)
T PRK05942        144 QIYPIILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQP  222 (394)
T ss_pred             EEEEeecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC
Confidence            7777643       368899988876 7999999999999999998   678888999999999999997643210    


Q ss_pred             cc---cc--cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHH
Q 009523          333 KA---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQ  403 (532)
Q Consensus       333 ~~---l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~  403 (532)
                      .+   +.  ....+++.|+||.+|.+| .+.|++++++++++.++......+...+...+.++...++.    +....++
T Consensus       223 ~~~~~~~~~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  301 (394)
T PRK05942        223 TSLLEIPGAKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQER  301 (394)
T ss_pred             CChhhCCCccccEEEEecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            11   11  124588899999997655 46899999999999988766543433444444444444432    2222333


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH-HcCCCceeecCCCcccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID-ALKIPYIAPSFGGCESI  482 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~-~L~~~~i~vs~G~~~sl  482 (532)
                      ..++.+.+.+.|++. ++ .+..|.                .|.++|+.++... ....+.. .++..++.+..|..+. 
T Consensus       302 ~~~~~~~~~~~L~~~-~~-~~~~~~----------------~~~f~~~~~~~~~-~~~~~~~~~l~~~gV~v~~g~~f~-  361 (394)
T PRK05942        302 YRTRRDFLIQGLGEL-GW-NIPPTK----------------ATMYLWVPCPVGM-GSTDFALNVLQKTGVVVTPGNAFG-  361 (394)
T ss_pred             HHHHHHHHHHHHHHC-CC-eecCCC----------------eeeEEEEECCCCC-CHHHHHHHHHHHCCEEEeCChhhC-
Confidence            445566677777664 23 121111                3447899987431 1223333 3334566666664321 


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHH
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA  528 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~A  528 (532)
                         +                 ...++|||+++ .+.+.+.+.|++.
T Consensus       362 ---~-----------------~~~~~iRis~~-~~~~~l~~~l~~l  386 (394)
T PRK05942        362 ---E-----------------GGEGYVRISLI-ADCDRLGEALDRL  386 (394)
T ss_pred             ---c-----------------CCCCeEEEEec-CCHHHHHHHHHHH
Confidence               0                 12579999998 4456665555543

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=1.2e-23  Score=220.56  Aligned_cols=285  Identities=14%  Similarity=0.215  Sum_probs=196.1

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+.+....|++.+|++++.+ +.|++++|+ +++..++.+++++||+|++++|.|....    ......|+++..++
T Consensus        61 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~  136 (367)
T PRK02731         61 LHRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYP----IAAQAVGAKPVEVP  136 (367)
T ss_pred             hcCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHH----HHHHHcCCeEEEec
Confidence            45666666789999999999874 456666665 8888888889999999999999996533    23455788888776


Q ss_pred             C----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCCc-------ccccc-cC
Q 009523          273 P----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-------QKALS-LG  338 (532)
Q Consensus       273 ~----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~~-------~~~l~-~g  338 (532)
                      .    .|++++++++++ ++++|++++|+||||.+++.+++.++++.+  |+++|+|++|.....       ..... ..
T Consensus       137 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  215 (367)
T PRK02731        137 AKDYGHDLDAMLAAVTP-RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFP  215 (367)
T ss_pred             ccCCCCCHHHHHHHhCC-CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcC
Confidence            4    378999999976 799999999999999999999999998874  899999999754321       11111 12


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L  415 (532)
                      ..+++.|+||.+|.+| ...|++++++++++.+......++  .+....+.+...++.   +....+...++.+.+.+.|
T Consensus       216 ~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L  292 (367)
T PRK02731        216 NVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRVRQPFN--VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL  292 (367)
T ss_pred             CEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHccCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999997555 457999999999988876554333  344444444444432   2222333345566677777


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++. ++. + +|.                .|+++|+.++.. .....|.+.|...++.+..|..+               
T Consensus       293 ~~~-g~~-~-~~~----------------~g~~~~i~~~~~-~~~~~~~~~L~~~gI~v~~~~~~---------------  337 (367)
T PRK02731        293 AEL-GLE-Y-IPS----------------VGNFILVDFDDG-KDAAEAYQALLKRGVIVRPVAGY---------------  337 (367)
T ss_pred             HHC-CCc-c-CCC----------------CceEEEEECCCC-CCHHHHHHHHHHCCEEEEeCCCC---------------
Confidence            765 332 1 121                367899998532 23456666665567777655321               


Q ss_pred             HHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                             | .+++||||++. ++.+.+++.|+++++
T Consensus       338 -------~-~~~~iRis~~~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        338 -------G-LPNALRITIGTEEENRRFLAALKEFLA  365 (367)
T ss_pred             -------C-CCCeEEEecCCHHHHHHHHHHHHHHHh
Confidence                   1 14689999985 344555666655554

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.92  E-value=7.8e-23  Score=213.28  Aligned_cols=281  Identities=17%  Similarity=0.186  Sum_probs=190.3

Q ss_pred             CCCCchh-HHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHhccCC---CEEEEcCCCCcchHHHHHHhcc
Q 009523          196 GRYGNPT-TVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAG---GHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~----ga---~~-~i~~sSG~-~Ai~~al~all~~G---d~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      .+|+.+. ...|++++++++    |.   .+ .|++++|+ +|+..++.+++++|   |+|++++|+|.....    .++
T Consensus        30 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~----~~~  105 (350)
T TIGR03537        30 SQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYER----GAL  105 (350)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHH----HHH
Confidence            3455543 567888888875    52   22 56666665 99999999999887   699999999987553    345


Q ss_pred             cCCcEEEEeCCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc
Q 009523          263 KMGITATVIDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ  332 (532)
Q Consensus       263 ~~Gv~v~~vd~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~  332 (532)
                      ..|+++..++.+       |++++++++++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.....
T Consensus       106 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~  184 (350)
T TIGR03537       106 FAGGEPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG  184 (350)
T ss_pred             hcCCEEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC
Confidence            678888777532       78999998877 6999999999999999998   788999999999999999998753211


Q ss_pred             c----cc--ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHH
Q 009523          333 K----AL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQ  403 (532)
Q Consensus       333 ~----~l--~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~  403 (532)
                      .    ..  .....+++.|+||.+|.+| .+.|++++++++++.++......+...++....++...+   +.+..+.++
T Consensus       185 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~  263 (350)
T TIGR03537       185 EPPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKI  263 (350)
T ss_pred             CCCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHH
Confidence            1    11  1233589999999998765 567899999999998887665555444444333333333   233334445


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..++...+.+.|+++ ++ .+..|.                .|.++|+.++.. .....+.+.|...++.+..|..+.. 
T Consensus       264 l~~~~~~~~~~l~~~-g~-~~~~~~----------------g~~~~~~~~~~~-~~~~~l~~~L~~~gv~v~~g~~f~~-  323 (350)
T TIGR03537       264 FKRKRDLFIEFFNKV-GL-EYLYPD----------------ATFYLWVKVPSG-IDAKDYALRLLENGIVVAPGENFGS-  323 (350)
T ss_pred             HHHHHHHHHHHHHHC-CC-cccCCC----------------eEEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhCC-
Confidence            556667777777765 22 222221                344688988753 2345666666555777766643210 


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHH
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKA  523 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~  523 (532)
                                          ..++++||+++ .+.+++.+
T Consensus       324 --------------------~~~~~~Ri~~~-~~~~~~~~  342 (350)
T TIGR03537       324 --------------------GEEGYVRVALV-PTLEECEE  342 (350)
T ss_pred             --------------------CCCCEEEEEec-CCHHHHHH
Confidence                                02578999997 34444333

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.92  E-value=7e-23  Score=216.21  Aligned_cols=284  Identities=16%  Similarity=0.164  Sum_probs=186.9

Q ss_pred             CCCCchh-HHHHHHHHHhhh----CC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNPT-TVVVEEKMSALE----GA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~----ga----~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .+|+.+. ...|++++++++    |.    ++.+++++| ++++..++..++++||+|++++|+|....    ..++..|
T Consensus        63 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~----~~~~~~g  138 (385)
T PRK09276         63 HQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYK----IGTIFAG  138 (385)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChH----HHHHHcC
Confidence            3454443 567888888876    32    234666555 59999999999999999999999998744    3344567


Q ss_pred             cEEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          266 ITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       266 v~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                      .++..++.       .|++++++.+.+ ++++|++++|+||||.+++.   ++|+++|+++|+++|+|++|.....    
T Consensus       139 ~~~~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~  217 (385)
T PRK09276        139 GEPYFMPLKEENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYK  217 (385)
T ss_pred             CEEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCC
Confidence            77776643       257888888876 69999999999999999984   7888889999999999999764321    


Q ss_pred             ccc---cc--cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHH
Q 009523          332 QKA---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQ  402 (532)
Q Consensus       332 ~~~---l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~  402 (532)
                      ...   +.  .+..+++.|+||.+|.+| .+.||+++++++++.++..........+......+...+.    .+....+
T Consensus       218 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  296 (385)
T PRK09276        218 PPSFLEVPGAKDVGIEFHSLSKTYNMTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRK  296 (385)
T ss_pred             CCChhccCCCcCCEEEEecchhhcCCcc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHH
Confidence            111   11  234588999999998766 4578999999999988876554444444444443333332    2222233


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCES  481 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~s  481 (532)
                      +..++++.+.+.|++. ++ .+..|.                .|.++++.+++. .....|.+.+ +..++.+..|..+.
T Consensus       297 ~~~~~~~~l~~~L~~~-~~-~~~~~~----------------~~~~~~v~~~~~-~~~~~l~~~ll~~~gi~v~~g~~f~  357 (385)
T PRK09276        297 IYQERRDILVEGLRKL-GL-EVEPPK----------------ATFYVWAPVPKG-YTSAEFATLLLDKAGVVVTPGNGFG  357 (385)
T ss_pred             HHHHHHHHHHHHHHhC-CC-cccCCC----------------cceEEEEECCCC-CCHHHHHHHHHHhCCEEECCchhhC
Confidence            4456677777888765 33 122121                244578888743 2234455544 33466666664321


Q ss_pred             ccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 009523          482 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL  526 (532)
Q Consensus       482 l~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~  526 (532)
                          +                 ..++++|||++. +.+++.+.|+
T Consensus       358 ----~-----------------~~~~~~Ris~~~-~~~~l~~~l~  380 (385)
T PRK09276        358 ----E-----------------YGEGYFRIALTV-PDERIEEAVE  380 (385)
T ss_pred             ----C-----------------CCCCeEEEEeCC-CHHHHHHHHH
Confidence                0                 124799999996 4444444443

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1.5e-23  Score=218.80  Aligned_cols=280  Identities=17%  Similarity=0.225  Sum_probs=193.4

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG-~~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .+||+++...+|++++++.+|.+ +.|++++| ++++..++.+++++| |+|+++.|+|....    ..++..|+++..+
T Consensus        51 ~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v  126 (351)
T PRK01688         51 LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTV  126 (351)
T ss_pred             cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEe
Confidence            67889999999999999999963 34555555 599999999999997 89999999997533    4456678888777


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCccc----cc-ccCC
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK----AL-SLGA  339 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~~----~l-~~ga  339 (532)
                      +.     .|++++++++ + ++++|++++||||||.+.+.+++.++++.  .++++|+||+|.......    .. ....
T Consensus       127 ~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n  204 (351)
T PRK01688        127 PTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH  204 (351)
T ss_pred             ecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCC
Confidence            54     2688998887 4 69999999999999999998877777653  268999999986543211    11 1234


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l-----~tl~~r~~~~~~~a~~la~~  414 (532)
                      -+++.|+||.+|.+| ++.|++++++++++.+++....++  .+...+..+...+     +.+..+++...++++++.+.
T Consensus       205 ~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~~~~~~~--v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~  281 (351)
T PRK01688        205 LVILRTLSKAFALAG-LRCGFTLANEEVINLLLKVIAPYP--LSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAA  281 (351)
T ss_pred             EEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHhccCCCC--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999998555 457899999999998887654333  2332222222233     33445556666778888889


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      |++++.+..+ +|.                .++++++.+++    ...+.+.|...++.+..++.+              
T Consensus       282 L~~~~~~~~~-~ps----------------~~nfi~~~~~~----~~~l~~~L~~~gi~vr~~~~~--------------  326 (351)
T PRK01688        282 LKEIPCVEQV-FDS----------------ETNYILARFTA----SSAVFKSLWDQGIILRDQNKQ--------------  326 (351)
T ss_pred             HHhCCCCCeE-CCC----------------CCcEEEEEcCC----HHHHHHHHHHCCeEEEECCCc--------------
Confidence            9887654333 332                36688888752    244555555556666543211              


Q ss_pred             CHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          495 SQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                             .|. ++++|||+|.+   +..+.|.++|
T Consensus       327 -------~~~-~~~iRis~~~~---~e~~~l~~al  350 (351)
T PRK01688        327 -------PGL-SNCLRITIGTR---EECQRVIDAL  350 (351)
T ss_pred             -------CCC-CCeEEEeCCCH---HHHHHHHHhh
Confidence                   122 57899999953   3345555554

>PRK12414 putative aminotransferase; Provisional

Probab=99.92  E-value=1.6e-22  Score=213.67  Aligned_cols=281  Identities=14%  Similarity=0.132  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          202 TTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ..+.+++.+++++|.     ++++++++|++++..++.+++.+||+|++++|+|......    ++..|.++..++.   
T Consensus        71 lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~  146 (384)
T PRK12414         71 LREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPI----VRLQGATPVAIKLSPE  146 (384)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHH----HHHcCCEEEEEecCcc
Confidence            344455555555675     2477777777999999999999999999999999875433    3445777766653   


Q ss_pred             ---CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc-----cC
Q 009523          274 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-----LG  338 (532)
Q Consensus       274 ---~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~-----~g  338 (532)
                         .|+++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ..++.     .+
T Consensus       147 ~~~~d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  225 (384)
T PRK12414        147 DFRVNWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAE  225 (384)
T ss_pred             ccccCHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccC
Confidence               268999999876 6999999999999999975   67788889999999999999764321    11111     12


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L  415 (532)
                      ..+++.|+||.+|.+| .+.||+++++++++.+...........+...+.++...++.   .....+...++++.+.+.|
T Consensus       226 ~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L  304 (384)
T PRK12414        226 RSVIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLAREL  304 (384)
T ss_pred             cEEEEecccccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999998565 56899999999998887765433333344444444443322   1122334456677778888


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      +++ ++. +..|.                .|.++|+.++.  +....+.+.+.++..++.+..|..+..           
T Consensus       305 ~~~-g~~-~~~~~----------------gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~-----------  355 (384)
T PRK12414        305 AGS-RFE-LLPSE----------------GSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYT-----------  355 (384)
T ss_pred             HhC-CCe-ecCCC----------------cceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcC-----------
Confidence            875 232 22121                34466767753  111222222445556788777754321           


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL  526 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~  526 (532)
                              .+..+++|||+++. +.+++.+.++
T Consensus       356 --------~~~~~~~iRis~~~-~~~~~~~~~~  379 (384)
T PRK12414        356 --------DGTDTGLIRLSFSK-DDATLVEGAR  379 (384)
T ss_pred             --------CCCCCCEEEEEecC-CHHHHHHHHH
Confidence                    01225799999997 4454444443

>PRK07337 aminotransferase; Validated

Probab=99.92  E-value=6.4e-23  Score=216.79  Aligned_cols=281  Identities=19%  Similarity=0.182  Sum_probs=189.0

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ....|++++|+++    |.    ++.++++++++|+..++.+++++||+|++++|+|.+....    +...|.++..++.
T Consensus        68 g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~  143 (388)
T PRK07337         68 GLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHF----VAAAEGRPVLVPS  143 (388)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH----HHHcCCEEEEeec
Confidence            3677888888876    32    3456666667999999999999999999999999986543    3445666666643


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccccCC
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLGA  339 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~~ga  339 (532)
                             .|++++++.+++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ......+.
T Consensus       144 ~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  222 (388)
T PRK07337        144 GPAERFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGD  222 (388)
T ss_pred             CCccCCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccC
Confidence                   268999999887 6999999999999999997   56788889999999999999764321    11222333


Q ss_pred             c-EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHH
Q 009523          340 D-LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       340 D-ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~la~  413 (532)
                      + +++.|+||.+|.+| .+.||+++++++++.+.......+...+.....++...+.     .+....++..++++.+.+
T Consensus       223 ~vi~~~S~SK~~~~~G-~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~  301 (388)
T PRK07337        223 DVITINSFSKYFNMTG-WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVP  301 (388)
T ss_pred             CEEEEEechhhcCCch-hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            3 56889999998666 4589999999999988876655554455554444443332     232333344466677778


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHH-cCCCceeecCCCcccccccCcc
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDA-LKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~~-L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      .|+++ ++.....|.                .|.++|++++..    ......|.+. ++..++.+..|..+..   +  
T Consensus       302 ~L~~~-~~~~~~~p~----------------~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~---~--  359 (388)
T PRK07337        302 ALESL-GFKVPVMPD----------------GAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP---H--  359 (388)
T ss_pred             HHHhc-CCccccCCC----------------eeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---C--
Confidence            88775 221111221                467889998631    1123445544 4455777777654321   0  


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL  526 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~  526 (532)
                                     -.++++||+++. +.+++.+.++
T Consensus       360 ---------------~~~~~~Ri~~~~-~~~~l~~~l~  381 (388)
T PRK07337        360 ---------------APRDYIRLSYAT-SMSRLEEAVA  381 (388)
T ss_pred             ---------------CCCCEEEEEecC-CHHHHHHHHH
Confidence                           025799999997 4454444443

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.92  E-value=1.1e-22  Score=216.78  Aligned_cols=287  Identities=13%  Similarity=0.142  Sum_probs=188.9

Q ss_pred             CCCCch-hHHHHHHHHHhhhCC--------------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHh
Q 009523          196 GRYGNP-TTVVVEEKMSALEGA--------------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV  260 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~ga--------------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~  260 (532)
                      .+|+++ ....|+++||++++.              ++.++++++++++..++.+++++||+|+++.|+|....    ..
T Consensus        69 ~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~----~~  144 (412)
T PTZ00433         69 NGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYE----TV  144 (412)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHH----HH
Confidence            456655 477899999998751              34555555569999999999999999999999998754    34


Q ss_pred             cccCCcEEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCC
Q 009523          261 LPKMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  330 (532)
Q Consensus       261 l~~~Gv~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~  330 (532)
                      ++..|+++..++.       .|+++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|....
T Consensus       145 ~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  223 (412)
T PTZ00433        145 CKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD-RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV  223 (412)
T ss_pred             HHHcCCEEEEEecCccccCcCCHHHHHHHhcc-CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence            5667888777653       268899998877 6999999999999999987   6677888999999999999987532


Q ss_pred             cc----cc---cc-cCCcEEEECCccccCCCCCcEEEEEEe--C----hHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-
Q 009523          331 NQ----KA---LS-LGADLVLHSATKFIGGHNDVLAGSISG--S----GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-  395 (532)
Q Consensus       331 ~~----~~---l~-~gaDivv~S~sK~lgg~gd~~gG~lv~--~----~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-  395 (532)
                      ..    .+   +. ....+++.|+||.++.+| .+.||+++  +    +++++.++..... ....+...+.++...+. 
T Consensus       224 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRlG~~i~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~  301 (412)
T PTZ00433        224 FNGATFTSVADFDTTVPRVILGGTAKNLVVPG-WRLGWLLLVDPHGNGGDFLDGMKRLGML-VCGPCSVVQAALGEALLN  301 (412)
T ss_pred             cCCCCccchhhccCCCceEEEccchhhcCCCC-eeEEEEEEeCCcccHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhc
Confidence            11    11   11 112478899999998776 56788886  2    3566666654432 22344544444333332 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHc
Q 009523          396 ----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL  467 (532)
Q Consensus       396 ----tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~~L  467 (532)
                          .+....++..++.+.+.+.|+++.++. +..|.                .|.++|+.++..    ......|.+.+
T Consensus       302 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~----------------gg~f~~~~l~~~~~~~~~~~~~~~~~l  364 (412)
T PTZ00433        302 TPQEHLEQIVAKLEEGAMVLYNHIGECIGLS-PTMPR----------------GSMFLMSRLDLEKFRDIKSDVEFYEKL  364 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCC----------------eeEEEEEEechhhcCCCCCHHHHHHHH
Confidence                233333445566777778887654331 22221                466789888631    11234566665


Q ss_pred             C-CCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009523          468 K-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL  529 (532)
Q Consensus       468 ~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL  529 (532)
                      . ..++.+..|..+.                       .++++||+++..  +.++.++.|.+++
T Consensus       365 l~~~gV~v~pg~~f~-----------------------~~~~iRis~~~~~e~l~~al~~l~~~~  406 (412)
T PTZ00433        365 LEEENVQVLPGEIFH-----------------------MPGFTRLTISRPVEVLREAVERIKAFC  406 (412)
T ss_pred             HHhcCEEEeCccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence            3 4577777664421                       146899999964  2233344444444

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.92  E-value=1.7e-22  Score=210.14  Aligned_cols=282  Identities=18%  Similarity=0.206  Sum_probs=202.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+...+++++++++++.++.+++++|++++..++.+++++||+|+++++.|.....    .++..|+++..++..|+++|
T Consensus        60 ~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l  135 (360)
T TIGR00858        60 SPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLID----GCRLSGARVRRYRHNDVEHL  135 (360)
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHH----HHHhcCCceEEecCCCHHHH
Confidence            36788899999999998889999999988887888889999999999999987553    34456788888887899999


Q ss_pred             HHhhcCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-cc--c------c-ccCCcEEEECC
Q 009523          280 EAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QK--A------L-SLGADLVLHSA  346 (532)
Q Consensus       280 e~al~~~---~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~--~------l-~~gaDivv~S~  346 (532)
                      ++.+++.   ++++|++++++|++|.+.|+++|.++|+++|+++|+|+++..+.. ..  .      . ..+.|+++.|+
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~  215 (360)
T TIGR00858       136 ERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL  215 (360)
T ss_pred             HHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence            9988642   479999999999999999999999999999999999999864321 11  0      1 23678999999


Q ss_pred             ccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          347 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      ||++++.    ||++++++++++.++.....  .+...++.....+...++   ......++..++.+++.+.|++++ +
T Consensus       216 sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~  290 (360)
T TIGR00858       216 SKALGSY----GAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG-F  290 (360)
T ss_pred             hhhhhcc----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            9999974    48999999888887653322  233344444333333443   223345666678888888887753 2


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHh
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK  501 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~  501 (532)
                      . + +|                ..++++++.++.. .....|.+.|...++.+..+.....   +               
T Consensus       291 ~-~-~~----------------~~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~---~---------------  333 (360)
T TIGR00858       291 T-L-MP----------------SCTPIVPVIIGDN-ASALALAEELQQQGIFVGAIRPPTV---P---------------  333 (360)
T ss_pred             c-c-CC----------------CCCCEEEEEeCCH-HHHHHHHHHHHHCCeeEeeeCCCCC---C---------------
Confidence            1 1 11                1366899988642 3455677777666776665422110   0               


Q ss_pred             cCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          502 YGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       502 ~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                        -..+.||+|++..+.++.++.+.++|
T Consensus       334 --~~~~~iRis~~~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       334 --AGTSRLRLTLSAAHTPGDIDRLAEAL  359 (360)
T ss_pred             --CCCceEEEEEcCCCCHHHHHHHHHhh
Confidence              01458999999876666666666655

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.92  E-value=1.7e-23  Score=222.28  Aligned_cols=302  Identities=17%  Similarity=0.175  Sum_probs=197.4

Q ss_pred             CchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          199 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all----~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .....+.+++.+++++|.+  +++++++|+++++.++.++.    ++||+|+++.++|++....+. .++..|++++.++
T Consensus        45 ~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-~~~~~g~~v~~v~  123 (402)
T TIGR02006        45 AEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-YLEREGFEVTYLP  123 (402)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-HHHhcCCEEEEEc
Confidence            3456788899999999974  46666677799998877653    689999999999988766553 3456688888886


Q ss_pred             CC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECC
Q 009523          273 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA  346 (532)
Q Consensus       273 ~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~  346 (532)
                      .+     |++++++++++ ++++|++++++||||.+.|+++|.++|+++|+++++|++++.+. +.+....++|+++.|+
T Consensus       124 ~~~~~~~d~~~l~~~l~~-~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~  202 (402)
T TIGR02006       124 PKSNGLIDLEELKAAIRD-DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISG  202 (402)
T ss_pred             cCCCCcCCHHHHHHhcCC-CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEeh
Confidence            43     79999999987 69999999999999999999999999999999999999987653 3455567899999999


Q ss_pred             ccccCCCCCcEEEEEEeChHHHHHHHHHh-------hhcCCCccHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHH
Q 009523          347 TKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~~G~~~~~~~a~l~l~~l~tl----~~r~~~~~~~a~~la~~L  415 (532)
                      +|++|++|   .|+++.+++....+....       ....++.+......+..+++.+    ..+.++..+.+.++.+.|
T Consensus       203 ~K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l  279 (402)
T TIGR02006       203 HKIYGPKG---IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI  279 (402)
T ss_pred             hhhcCCCc---eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99988766   455555543222221110       1112233333333333344333    233344445566666677


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++.+.+... .+. +.            ..++++.|.+++.  ....++..++  ++.++.|..++    +..    .-+
T Consensus       280 ~~~~~v~~~-~~~-~~------------~~p~~~~v~f~~~--~~~~~~~~l~--~i~v~~G~~c~----~~~----~~~  333 (402)
T TIGR02006       280 KSIEEVYLN-GDL-EH------------RVPGNLNVSFNYV--EGESLIMALK--DLAVSSGSACT----SAS----LEP  333 (402)
T ss_pred             hcCCCEEEe-CCc-cc------------cCCCeEEEEEeCc--CHHHHHHhcC--CEEEechhhcC----CCC----CCc
Confidence            666665322 111 00            0122223334321  1234444554  67778775532    110    112


Q ss_pred             HHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          496 QSERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       496 ~~~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ......+|+.    .+.||+|++..++++.++.+.++|++
T Consensus       334 ~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~  373 (402)
T TIGR02006       334 SYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKS  373 (402)
T ss_pred             cHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            2334566764    47999999998877777777777653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.92  E-value=8.9e-23  Score=215.69  Aligned_cols=278  Identities=15%  Similarity=0.125  Sum_probs=182.3

Q ss_pred             hhHHHHHHHHHhhh----C--C-Cc-EEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSALE----G--A-ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l~----g--a-~~-~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +....|++++|+++    |  . .+ .|++++|+ +|+..++.+++.+||+|++++|+|....    ..++..|.++..+
T Consensus        68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v  143 (388)
T PRK07366         68 HGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHA----GGVYLAGGQIYPM  143 (388)
T ss_pred             CCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEE
Confidence            44567888888876    3  2 23 46666665 9999999999999999999999998754    3445568887776


Q ss_pred             CCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCcc------ccc
Q 009523          272 DPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ------KAL  335 (532)
Q Consensus       272 d~~-------dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~------~~l  335 (532)
                      +.+       |++++++.+.+ ++++|++++|+||||.+++.   ++|+++|+++|++||+||+|......      ...
T Consensus       144 ~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~  222 (388)
T PRK07366        144 PLRAENDFLPVFADIPTEVLA-QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSIL  222 (388)
T ss_pred             ECCCccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChh
Confidence            532       46677777765 68999999999999999985   46777899999999999997654211      111


Q ss_pred             cc----CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH----HHHHHHHHHHHHH
Q 009523          336 SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST  407 (532)
Q Consensus       336 ~~----gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l----~tl~~r~~~~~~~  407 (532)
                      ..    ...+++.|+||.+|.+| .+.||+++++++++.+.......+....+.....+...+    +.+....+...++
T Consensus       223 ~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~  301 (388)
T PRK07366        223 QADPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQR  301 (388)
T ss_pred             hCCCCcccEEEEeecccccCCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            11    12478899999998666 568999999999998887665444332221111112222    2233334444566


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHc-CCCceeecCCCccccccc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDAL-KIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L-~~~~i~vs~G~~~sl~~~  485 (532)
                      .+.+.+.|+++ ++ .+..|.                .|.++|+++++.. .....|.+.+ +..++.+..|..+.    
T Consensus       302 r~~l~~~L~~~-~~-~~~~p~----------------~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~----  359 (388)
T PRK07366        302 RDAFINALHQI-GW-PVPLPE----------------ATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFG----  359 (388)
T ss_pred             HHHHHHHHHHC-CC-cccCCC----------------eeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhC----
Confidence            67777888765 22 122222                4778899987421 1234455444 45577777764431    


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHH
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD  524 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~d  524 (532)
                                       +...++|||+++. +.+++.+.
T Consensus       360 -----------------~~~~~~iRi~~~~-~~~~l~~~  380 (388)
T PRK07366        360 -----------------KSGEGYVRFALVH-DPDILEEA  380 (388)
T ss_pred             -----------------cCCCCeEEEEecC-CHHHHHHH
Confidence                             0124789999985 44443333

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=3.3e-23  Score=216.62  Aligned_cols=278  Identities=15%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             CCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          197 RYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      +|+.+...+|++++|++++.+ +.+++++| ++++..++.+++++||+|++++|+|+...    ..+...|.++..++. 
T Consensus        60 ~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~  135 (359)
T PRK03158         60 LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYR----HNAIIEGAEVREVPLK  135 (359)
T ss_pred             cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEEecC
Confidence            456667889999999999863 34445445 59999999999999999999999998744    334456777777754 


Q ss_pred             ---CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc----ccc----ccCCc
Q 009523          274 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SLGAD  340 (532)
Q Consensus       274 ---~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~----~~l----~~gaD  340 (532)
                         .|++++++++++ ++++|++++|+||||.+.+.++|.++++.  +|+++|+||+|......    ...    ..+..
T Consensus       136 ~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~v  214 (359)
T PRK03158        136 DGGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENL  214 (359)
T ss_pred             CCCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCE
Confidence               378999988877 79999999999999999999999998876  59999999997643211    111    23456


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHh
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~  417 (532)
                      +++.|+||.+|.+| ++.||+++++++++.+......+  ..+......+...++.   +....+...++.+.+.+.|++
T Consensus       215 i~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  291 (359)
T PRK03158        215 IVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIARPPF--NTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE  291 (359)
T ss_pred             EEEEechHhhcCcc-hhhehhcCCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998665 46799999999999887765433  2455555555444432   222223334555666677776


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      + ++. + +|.                .|.++++.++.+   ...+.+.|...++.+..|..+                 
T Consensus       292 ~-~~~-~-~~~----------------~g~~i~~~~~~~---~~~~~~~l~~~gv~v~~g~~f-----------------  332 (359)
T PRK03158        292 Y-GLF-Y-YPS----------------QTNFIFVDTGRD---ANELFEALLKKGYIVRSGAAL-----------------  332 (359)
T ss_pred             C-CCe-e-CCC----------------cCcEEEEECCCC---HHHHHHHHHHCCeEEeeCCCC-----------------
Confidence            5 332 2 222                356888887532   334555554457777766432                 


Q ss_pred             HHHhcCCCCCeEEEEecCC-CHHHHHHHHHH
Q 009523          498 ERLKYGIMDNLVRFSFGVE-DFEDLKADVLQ  527 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~  527 (532)
                           | .+++|||+++.. +.+.+++.|++
T Consensus       333 -----~-~~~~iRi~~~~~~~~~~l~~al~~  357 (359)
T PRK03158        333 -----G-FPTGVRITIGLKEQNDKIIELLKE  357 (359)
T ss_pred             -----C-CCCeEEEecCCHHHHHHHHHHHHH
Confidence                 1 146899999953 34555555544

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.92  E-value=8e-23  Score=216.69  Aligned_cols=277  Identities=18%  Similarity=0.192  Sum_probs=182.9

Q ss_pred             CCCchh-HHHHHHHHHhhh----CC-----CcEEEeCCH-HHHHHHHHHHhccC---CCEEEEcCCCCcchHHHHHHhcc
Q 009523          197 RYGNPT-TVVVEEKMSALE----GA-----ESTVIMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~----ga-----~~~i~~sSG-~~Ai~~al~all~~---Gd~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      +|+.+. ...|++.||+++    |.     ++.|++++| ++++..++.+++++   ||.|+++.|.|....    ..+.
T Consensus        60 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~----~~~~  135 (396)
T PRK09147         60 SYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYE----GAAL  135 (396)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchH----HHHH
Confidence            344332 456777777754    52     235655555 59999999999999   999999999998744    3445


Q ss_pred             cCCcEEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc
Q 009523          263 KMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ  332 (532)
Q Consensus       263 ~~Gv~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~  332 (532)
                      ..|+++..++.       .|++++++.+.+ ++++|++++|+||||.+++   +++|+++|++|+++||+||+|......
T Consensus       136 ~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~  214 (396)
T PRK09147        136 LAGAEPYFLNCDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFD  214 (396)
T ss_pred             hcCCEEEEeccCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccC
Confidence            56888877753       267889887766 6999999999999999997   567888889999999999998754211


Q ss_pred             c---c---c----cc-----CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH--
Q 009523          333 K---A---L----SL-----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--  395 (532)
Q Consensus       333 ~---~---l----~~-----gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~--  395 (532)
                      .   +   +    ..     ...+++.|+||.++.+| ++.||+++++++++.+.......+...++.....+...+.  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~  293 (396)
T PRK09147        215 EAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDE  293 (396)
T ss_pred             CCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcch
Confidence            1   0   1    11     23489999999887776 5689999999999888776654444555554444333332  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCcee
Q 009523          396 -TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIA  473 (532)
Q Consensus       396 -tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~  473 (532)
                       .+....+...++.+.+.+.|.++  + .+..|                ..|.++|++++.+   ...|.+.+ +..++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~L~~~--~-~~~~p----------------~~g~f~~~~~~~~---~~~~~~~ll~~~gv~  351 (396)
T PRK09147        294 AHVRENRALYREKFDAVTPILAPV--L-DVQLP----------------DAGFYLWAKVPGD---DTEFARRLYADYNVT  351 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh--c-CCCCC----------------CeeEEEEEECCCC---HHHHHHHHHHhCCEE
Confidence             23333344445566666677653  1 11122                1477899998722   23444444 345777


Q ss_pred             ecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009523          474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE  516 (532)
Q Consensus       474 vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e  516 (532)
                      +..|..+..-.. .              ..-..+++||+++..
T Consensus       352 v~pg~~f~~~~~-~--------------~~~~~~~iRi~~~~~  379 (396)
T PRK09147        352 VLPGSYLAREAH-G--------------VNPGAGRVRIALVAP  379 (396)
T ss_pred             EeCCcccccccc-C--------------CCCCCCeEEEEecCC
Confidence            777755421000 0              001257999999974

>PRK08068 transaminase; Reviewed

Probab=99.92  E-value=1.4e-22  Score=214.33  Aligned_cols=284  Identities=15%  Similarity=0.096  Sum_probs=189.2

Q ss_pred             CCCCC-chhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          195 YGRYG-NPTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       195 Y~R~~-~p~~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      +.+|+ .+....|++++|+++    |.    + +.+++++|++++..++.+++++||+|++++|+|.....    .++..
T Consensus        63 ~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~----~~~~~  138 (389)
T PRK08068         63 NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLS----GVALA  138 (389)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH----HHHhc
Confidence            34553 455778999999886    42    3 34555566699999999999999999999999987543    34556


Q ss_pred             CcEEEEeCCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCcc--
Q 009523          265 GITATVIDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ--  332 (532)
Q Consensus       265 Gv~v~~vd~~-------dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~--  332 (532)
                      |+++..++.+       |++++++++++ ++++|++++|+||||.+++.   ++|+++|+++++++|+||+|......  
T Consensus       139 g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~  217 (389)
T PRK08068        139 RAQFETMPLIAENNFLPDYTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ  217 (389)
T ss_pred             CCEEEEeecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC
Confidence            8877776542       57888888876 69999999999999999986   57777899999999999997542111  


Q ss_pred             c--c-cc----cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH----HHHHHHH
Q 009523          333 K--A-LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRV  401 (532)
Q Consensus       333 ~--~-l~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l----~tl~~r~  401 (532)
                      .  + ..    ....+++.|+||.+|.+| .+.||+++++++++.+............+..+..+...+    +.+....
T Consensus       218 ~~~s~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  296 (389)
T PRK08068        218 KPVSFLQTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELV  296 (389)
T ss_pred             CCcChhhCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHH
Confidence            1  1 11    124589999999998665 568999999999998887665544333332233222322    2233444


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcc
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCE  480 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~  480 (532)
                      ++..++++.+.+.|+++ ++ .+..|.                .|.++|+.+++. .....|.+.+. ..++.+..|..+
T Consensus       297 ~~~~~~r~~~~~~L~~~-g~-~~~~~~----------------g~~~~~v~~~~~-~~~~~~~~~l~~~~gi~v~pg~~f  357 (389)
T PRK08068        297 ARYESRRNAFISACREI-GW-EVDAPK----------------GSFFAWMPVPKG-YTSEQFADLLLEKAHVAVAPGNGF  357 (389)
T ss_pred             HHHHHHHHHHHHHHHHC-CC-cccCCC----------------eeEEEEEECCCC-CCHHHHHHHHHHhCCEEEecchHh
Confidence            55556677777888775 22 122111                244579998753 23345655554 347777666432


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      ..                     ..+++|||+++.+ .+.+.+.+
T Consensus       358 ~~---------------------~~~~~iRi~~~~~-~~~l~~al  380 (389)
T PRK08068        358 GE---------------------HGEGYVRVGLLTD-EERLREAV  380 (389)
T ss_pred             Cc---------------------cCCCeEEEEEcCC-HHHHHHHH
Confidence            10                     1257999999964 34444443

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.92  E-value=1.5e-22  Score=216.95  Aligned_cols=277  Identities=17%  Similarity=0.167  Sum_probs=182.2

Q ss_pred             hHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga--------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+|+++++++++.        +++++++++++|+.+++.+++++||+|++++|.|+....    .....|+++..++.
T Consensus        95 G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~----~~~~~g~~~~~~~~  170 (430)
T PLN00145         95 GLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEA----RAVFSGLEVRHFDL  170 (430)
T ss_pred             cCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHH----HHHHcCCEEEEeeC
Confidence            467888889888742        456667777799999999999999999999999987432    33445777777653


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc---c
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL---S  336 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l---~  336 (532)
                             .|+++|++++++ +++++++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ..++   .
T Consensus       171 ~~~~~~~~d~~~l~~~~~~-~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~  249 (430)
T PLN00145        171 LPERGWEVDLEGVEALADE-NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG  249 (430)
T ss_pred             CcccCCcCCHHHHHHHhCc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc
Confidence                   278999998887 6999999999999999998   67888889999999999999765321    1111   1


Q ss_pred             -cCCcEEEECCccccCCCCCcEEEEEEe--ChHHHH------HHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHH
Q 009523          337 -LGADLVLHSATKFIGGHNDVLAGSISG--SGKLVT------QIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQ  402 (532)
Q Consensus       337 -~gaDivv~S~sK~lgg~gd~~gG~lv~--~~~li~------~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~  402 (532)
                       ....+++.|+||.++.+| .+.||+++  ++.+++      .++.... .....+.+.++++...++     .+...++
T Consensus       250 ~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~  327 (430)
T PLN00145        250 EVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTKEEFFTKTLG  327 (430)
T ss_pred             ccCcEEEEeccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             124589999999988877 46788886  334433      2333322 222334444444333333     2344445


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHH-HcCCCceeecCC
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFID-ALKIPYIAPSFG  477 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~-~L~~~~i~vs~G  477 (532)
                      +..++++.+.+.|++++++..+..|.                .|..+++.++..    ......|+. .++..++.+..|
T Consensus       328 ~~~~~~~~~~~~L~~~~g~~~~~~P~----------------ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG  391 (430)
T PLN00145        328 LLKETADICYEKIKEIKCITCPHKPE----------------GSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPG  391 (430)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCcCCC----------------eeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCc
Confidence            55667777888887766543222332                466778887521    112233443 333445666655


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      ..+                      | .++++|||++. +.+++.+.+
T Consensus       392 ~~f----------------------g-~~~~lRis~~~-~~~~l~~al  415 (430)
T PLN00145        392 SAL----------------------G-MKNWLRITFAI-DPPSLEDGL  415 (430)
T ss_pred             ccc----------------------C-CCCeEEEEeCC-CHHHHHHHH
Confidence            432                      2 14799999996 444444433

>PLN02483 serine palmitoyltransferase

Probab=99.92  E-value=2.7e-22  Score=217.97  Aligned_cols=285  Identities=16%  Similarity=0.181  Sum_probs=198.3

Q ss_pred             CC-chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCH
Q 009523          198 YG-NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  276 (532)
Q Consensus       198 ~~-~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dl  276 (532)
                      |+ .+..++||+++|+++|.++++++++|+.++..++.+++++||+|+++++.|.+...    .++..|+++..++.+|+
T Consensus       142 ~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~----~~~~~Ga~v~~~~~~d~  217 (489)
T PLN02483        142 GGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVN----GARGSGATIRVFQHNTP  217 (489)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHH----HHHHcCCeEEEEeCCCH
Confidence            54 67899999999999999999999999998888899999999999999999998653    34567999999988888


Q ss_pred             HHHHHhhcC------CCe-----e-EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc----------ccc
Q 009523          277 EGLEAALNN------NNV-----S-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----------QKA  334 (532)
Q Consensus       277 e~Le~al~~------~~t-----k-lV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~----------~~~  334 (532)
                      +++++.+++      .++     + +|+++...|++|.+.++++|.++|+++|+++|+||++..+..          ...
T Consensus       218 ~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v  297 (489)
T PLN02483        218 SHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGV  297 (489)
T ss_pred             HHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCC
Confidence            888776642      122     4 677777889999999999999999999999999999864321          011


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH---------HHHHHH
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---------HLRVQQ  403 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl---------~~r~~~  403 (532)
                      ...++|+++.|+||.+|+.    ||++++++++++.++....  .++..+++..+..+..+++.+         ..+.++
T Consensus       298 ~~~~~dI~~~SfSKs~g~~----GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~  373 (489)
T PLN02483        298 DPADVDIMMGTFTKSFGSC----GGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ  373 (489)
T ss_pred             CcccCcEEEEecchhcccC----ceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence            1235799999999999865    5999999999999886532  234444555444444455422         235566


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..++.+.+.+.|+++ ++ .+..+.                .+.++++.+.. ......|.+.|...++.+...+.    
T Consensus       374 l~~~~~~l~~~L~~~-G~-~v~~~~----------------~sp~~~l~l~~-~~~~~~~~~~Ll~~GI~v~~~~f----  430 (489)
T PLN02483        374 IRENSNFFRSELQKM-GF-EVLGDN----------------DSPVMPIMLYN-PAKIPAFSRECLKQNVAVVVVGF----  430 (489)
T ss_pred             HHHHHHHHHHHHHHC-CC-cccCCC----------------CCCEEEEEECC-HHHHHHHHHHHHHCCcEEeeeCC----
Confidence            778888888989875 32 121110                23466776643 23445566666555666653211    


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                        |+.              ....+.+||+++...+++.++.+.++|
T Consensus       431 --p~~--------------p~~~~~vRi~isa~~t~edId~~l~~L  460 (489)
T PLN02483        431 --PAT--------------PLLLARARICISASHSREDLIKALEVI  460 (489)
T ss_pred             --CCC--------------CCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence              110              012367999998754444344333333

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=9e-23  Score=214.78  Aligned_cols=282  Identities=15%  Similarity=0.199  Sum_probs=190.4

Q ss_pred             CCCCchhHHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHhccCCC-EEEEcCCCCcchHHHHHHhcccC
Q 009523          196 GRYGNPTTVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~g--------a-~~~i~~sSG~-~Ai~~al~all~~Gd-~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      .+|+.+....|+++||++++        . .+.|++++|+ +++..++.+++.+|| +|+++.|+|....    ..++..
T Consensus        61 ~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~----~~~~~~  136 (374)
T PRK02610         61 NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYG----ILAQTL  136 (374)
T ss_pred             cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHH----HHHHHc
Confidence            45666677889999999987        2 2345555555 899888888888886 8999999998644    345667


Q ss_pred             CcEEEEeCC------CCHHHHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHh-CCCEEEEECCCCCCCccc-
Q 009523          265 GITATVIDP------ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQK-  333 (532)
Q Consensus       265 Gv~v~~vd~------~dle~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~la~~-~gi~lIvDet~a~~~~~~-  333 (532)
                      |+++..++.      .|+++|++++++   .++++|++++|+||||.+++.+++.++++- +++++|+||+|....... 
T Consensus       137 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~  216 (374)
T PRK02610        137 GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL  216 (374)
T ss_pred             CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch
Confidence            888877753      268899988863   479999999999999999998777666542 489999999986542111 


Q ss_pred             --ccc-cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHH
Q 009523          334 --ALS-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNST  407 (532)
Q Consensus       334 --~l~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~  407 (532)
                        .+. ...-+++.|+||.+|.+| ++.||+++++++++.+......++  .+.....++...++   .+..++++..+.
T Consensus       217 ~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (374)
T PRK02610        217 VGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALEHRQELLAAIPEILQE  293 (374)
T ss_pred             HHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence              111 122488999999998776 568999999999998877653332  34444444333332   333344444555


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      +..+.+.|+.++.+. + +|.                .|.++|++++.+ .....|.+.+...++.+..           
T Consensus       294 r~~l~~~L~~~~~~~-~-~p~----------------~g~f~~~~l~~~-~~~~~~~~~l~~~gi~v~~-----------  343 (374)
T PRK02610        294 RDRLYQALQELPQLR-V-WPS----------------AANFLYLRLSQD-AALAALHQALKAQGTLVRH-----------  343 (374)
T ss_pred             HHHHHHHHHhCCCcE-e-CCC----------------cceEEEEeCCCC-CCHHHHHHHHHHCCEEEEe-----------
Confidence            666777787765542 2 232                467899998743 2345566666544544421           


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHhh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALHA  531 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~AL~~  531 (532)
                                       .++++|||++.+ +.++.++.|.+++..
T Consensus       344 -----------------~~~~lRls~~~~~~~~~~l~~l~~~l~~  371 (374)
T PRK02610        344 -----------------TGGGLRITIGTPEENQRTLERLQAALTQ  371 (374)
T ss_pred             -----------------CCCeEEEeCCCHHHHHHHHHHHHHHHhh
Confidence                             136899999953 345566666666654

>PRK07550 hypothetical protein; Provisional

Probab=99.92  E-value=1.1e-22  Score=214.80  Aligned_cols=275  Identities=15%  Similarity=0.125  Sum_probs=186.6

Q ss_pred             hhHHHHHHHHHhhhC----C---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALEG----A---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~g----a---~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +...+|+++++++++    .   .+.|++++| ++|+..++.+++++||+|+++.|+|.....    .++..|+++..++
T Consensus        67 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~  142 (386)
T PRK07550         67 EGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKM----WLDMLGIRPVYLP  142 (386)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCCEEEEEe
Confidence            345667777776653    2   244555555 589999999999999999999999987543    3456788887776


Q ss_pred             CC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----ccccc-
Q 009523          273 PA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-  336 (532)
Q Consensus       273 ~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~-  336 (532)
                      .+       |++++++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+....     ..... 
T Consensus       143 ~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~  221 (386)
T PRK07550        143 CDEGPGLLPDPAAAEALITP-RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFAD  221 (386)
T ss_pred             cCCCcCCCCCHHHHHHHhcc-cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhC
Confidence            42       67889999987 6999999999999999997   67899999999999999999764321     11111 


Q ss_pred             --c-CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH---HH-HHHHHHHHH
Q 009523          337 --L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH---LR-VQQQNSTAL  409 (532)
Q Consensus       337 --~-gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~---~r-~~~~~~~a~  409 (532)
                        . ...+++.|+||.+|.+| ...|++++++++++.+.......+...+...++.+...++.+.   .+ .+...++.+
T Consensus       222 ~~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  300 (386)
T PRK07550        222 PDWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRD  300 (386)
T ss_pred             CCccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence              1 13478999999998554 4689999999998888876655554455555554444443322   22 233446667


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCcc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      .+.+.|.+++.+. + .|.                .|.++|+.++........+.+.| +..++.+..|..+.    +  
T Consensus       301 ~l~~~L~~~~~~~-~-~~~----------------g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~----~--  356 (386)
T PRK07550        301 AFRAVFARLPGWE-L-LAS----------------GAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFG----P--  356 (386)
T ss_pred             HHHHHHHhCCCce-e-CCC----------------ceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhC----C--
Confidence            7778887764431 1 111                35678888864112344565554 44577777765431    0  


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFED  520 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~d  520 (532)
                                     ..+++|||+++..+.++
T Consensus       357 ---------------~~~~~iRis~~~~~~~~  373 (386)
T PRK07550        357 ---------------GQEGYLRLAFANADVAG  373 (386)
T ss_pred             ---------------CCCCEEEEEeecCCHHH
Confidence                           12478999999755444

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.92  E-value=1.4e-22  Score=209.34  Aligned_cols=282  Identities=20%  Similarity=0.177  Sum_probs=198.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----C
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----~  274 (532)
                      +.+..+++++.+++++|.++.+++++|++|+..++.+++++||+|+++++.|....... ......|+++..++.    .
T Consensus        30 ~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~  108 (338)
T cd06502          30 EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKL  108 (338)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcC
Confidence            57889999999999999778899999999999999999999999999999987643211 112236888877765    4


Q ss_pred             CHHHHHHhhcC------CCeeEEEEeCCCCCCCcc---cCHHHHHHHHHhCCCEEEEECCCCC------CCcccccccCC
Q 009523          275 DMEGLEAALNN------NNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGA  339 (532)
Q Consensus       275 dle~Le~al~~------~~tklV~lesP~NptG~v---~dl~~I~~la~~~gi~lIvDet~a~------~~~~~~l~~ga  339 (532)
                      |+++|++++++      .++++|++++|+|| |.+   .++++|+++|+++|+++|+|+++..      +........++
T Consensus       109 d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~  187 (338)
T cd06502         109 TPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGV  187 (338)
T ss_pred             CHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcC
Confidence            78999999864      25899999999998 544   3567899999999999999998531      11222334578


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~a~l~l~~l~t--l~~r~~~~~~~a~~la~~L  415 (532)
                      |+++.|+||+++.++   |+++++++++++.++......+..  .++..++.+...++.  ...+.++..++++++.+.|
T Consensus       188 d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L  264 (338)
T cd06502         188 DSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEAL  264 (338)
T ss_pred             CEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999764   556678888988887765444332  344555555555544  3445567777888899999


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC---CCceeecCCCcccccccCcccccc
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK---IPYIAPSFGGCESIVDQPAIMSYW  492 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~---~~~i~vs~G~~~sl~~~pa~~s~~  492 (532)
                      ++++.  . .+|.                .++++.+.++++......+.+.+.   ..++.+.          +.     
T Consensus       265 ~~~~~--~-~~~~----------------~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~----------~~-----  310 (338)
T cd06502         265 EELGG--L-ESEV----------------QTNIVLLDPVEANAVFVELSKEAIERRGEGVLFY----------AW-----  310 (338)
T ss_pred             HhcCC--C-cccc----------------cCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEE----------ec-----
Confidence            87643  1 1221                356777777543344445554432   1222211          10     


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          493 DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       493 ~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                  ..+.||++++...+++.++.+.++++.
T Consensus       311 ------------~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         311 ------------GEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             ------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence                        126899999998777777887777764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.92  E-value=3.5e-22  Score=209.97  Aligned_cols=287  Identities=19%  Similarity=0.163  Sum_probs=203.9

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCH
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  276 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dl  276 (532)
                      ++..+..++++++++++++.++.+++++|++++..++..++++||+|+++++.|+.+...    +...|.++..++..|+
T Consensus        80 ~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~  155 (385)
T PRK05958         80 TGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDG----ARLSRARVRRYPHNDV  155 (385)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHH----HHhcCCceEEeCCCCH
Confidence            345678899999999999988899999999888888888899999999999999876533    3445788888888899


Q ss_pred             HHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-c--------ccc-cCCcEEEE
Q 009523          277 EGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K--------ALS-LGADLVLH  344 (532)
Q Consensus       277 e~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-~--------~l~-~gaDivv~  344 (532)
                      +++++.+++.  +++++++++++|++|.+.++++|+++|+++|+++|+|++++.+... .        .+. ...++++.
T Consensus       156 ~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~  235 (385)
T PRK05958        156 DALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVG  235 (385)
T ss_pred             HHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEE
Confidence            9999998652  3778888899999999999999999999999999999998643211 0        111 23458899


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCC
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      |+||++++.    ||++++++++++.+.....  ..+...++..+..+...++.+   ....++..++.+++.+.|++.+
T Consensus       236 s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~  311 (385)
T PRK05958        236 TLGKALGSS----GAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG  311 (385)
T ss_pred             echhhcccC----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999864    4888888888877754322  223334555544444455433   2344556677778888887642


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                       +. + ++                ..|++++|.+++ ......|.+.|...++.+..++...   .+             
T Consensus       312 -~~-~-~~----------------~~~~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~---~~-------------  355 (385)
T PRK05958        312 -FQ-L-MD----------------SQSAIQPLIVGD-NERALALAAALQEQGFWVGAIRPPT---VP-------------  355 (385)
T ss_pred             -CC-c-CC----------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEecccCCC---CC-------------
Confidence             21 1 11                136788998864 2445667777766677665432110   00             


Q ss_pred             HhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          500 LKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                          -..+.||||++....++.++.+.++|++
T Consensus       356 ----~~~~~lRis~~~~~~~~~i~~~l~~l~~  383 (385)
T PRK05958        356 ----AGTSRLRITLTAAHTEADIDRLLEALAE  383 (385)
T ss_pred             ----CCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence                0246899999976666666777766654

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.92  E-value=6.4e-23  Score=212.34  Aligned_cols=277  Identities=18%  Similarity=0.220  Sum_probs=195.0

Q ss_pred             CCCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          194 EYGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       194 ~Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .|.+|+++...+||+.+++++|.+ +.+++++|+ +++..+... +.+| .|++++|+|....    ..++..|+++..+
T Consensus        40 ~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~  113 (330)
T TIGR01140        40 AWARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYA----RAWRAAGHEVVEL  113 (330)
T ss_pred             HHhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEe
Confidence            467888888899999999999974 566666666 777776544 6778 6999999998644    3456779999888


Q ss_pred             CCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcccc-c----ccCCcEEE
Q 009523          272 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA-L----SLGADLVL  343 (532)
Q Consensus       272 d~~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~~-l----~~gaDivv  343 (532)
                      +  |++++++.++  ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|........ .    ..+.++++
T Consensus       114 ~--d~~~l~~~~~--~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~  189 (330)
T TIGR01140       114 P--DLDRLPAALE--ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL  189 (330)
T ss_pred             C--CHHHHHhhcc--cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence            7  8999999884  4789999999999999999   56677888999999999999865432211 1    12567999


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      .|+||.+|.+| .+.|++++++++++.+.......  ..+...+..+.+.++.   .....++..++.+.+.+.|++++.
T Consensus       190 ~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  266 (330)
T TIGR01140       190 RSLTKFFGLAG-LRLGFVVAHPALLARLREALGPW--TVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGG  266 (330)
T ss_pred             EecchhhcCch-hhhhheeCCHHHHHHHHhcCCCC--CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999998665 56799999999988887665432  3344545444444442   223344555777778888888764


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +. + .|.                .|.++|+.++..    ..|.+.|...++.+..|..+.                   
T Consensus       267 ~~-~-~~~----------------~~~f~~~~~~~~----~~l~~~l~~~gi~v~pg~~f~-------------------  305 (330)
T TIGR01140       267 LE-V-VGG----------------TALFLLVRTPDA----AALHEALARRGILIRDFDNFP-------------------  305 (330)
T ss_pred             ce-E-CCC----------------CCeEEEEEcCCH----HHHHHHHHHCCEEEEECCCCC-------------------
Confidence            42 2 221                366888888642    345555555577777665431                   


Q ss_pred             hcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          501 KYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                        +...++|||+++..+ ++  +.+..+|
T Consensus       306 --~~~~~~iRi~~~~~~-~~--~~~~~~l  329 (330)
T TIGR01140       306 --GLDPRYLRFALPTDE-EN--DRLEEAL  329 (330)
T ss_pred             --CCCCCEEEEEecCHH-HH--HHHHHhh
Confidence              123569999999644 22  5666655

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN00175 aminotransferase family protein; Provisional

Probab=99.92  E-value=5.4e-22  Score=211.63  Aligned_cols=272  Identities=16%  Similarity=0.180  Sum_probs=185.2

Q ss_pred             hHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+|++++++++    |.    + +.++++++++|+..++.+++++||+|++++|.|....    ..++..|.++..++
T Consensus        92 G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~  167 (413)
T PLN00175         92 GVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMAGAKIKTVT  167 (413)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEE
Confidence            3566777777765    32    2 3445555569999999999999999999999998754    33455688877775


Q ss_pred             C------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-c--c-cc---
Q 009523          273 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K--A-LS---  336 (532)
Q Consensus       273 ~------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-~--~-l~---  336 (532)
                      .      .|+++|++++.+ ++|+|++++|+||||.+++   +++|+++|+++++++|+|++|...... .  + ..   
T Consensus       168 ~~~~~~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~  246 (413)
T PLN00175        168 LRPPDFAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPG  246 (413)
T ss_pred             CCcccCCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCC
Confidence            3      268999999987 6999999999999999996   667888999999999999997654211 0  1 11   


Q ss_pred             -cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 009523          337 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  411 (532)
Q Consensus       337 -~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~l  411 (532)
                       .+..+++.|+||.++.+| .+.||+++++++++.+.........+.+....+++...++.    +....+...++++.+
T Consensus       247 ~~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l  325 (413)
T PLN00175        247 MYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDIL  325 (413)
T ss_pred             CcCcEEEEecchhhccCcc-hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence             234689999999998655 46899999999999888766544445565555555555532    333344555677778


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHc-CCCceeecCCCcccccccCccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      .+.|+++ ++. +..|.                .|.++|+.+.. +......|.+.| +..++.+..|..+...  +   
T Consensus       326 ~~~L~~~-g~~-~~~p~----------------g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~--~---  382 (413)
T PLN00175        326 VEGLKEV-GFK-VYPSS----------------GTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLN--P---  382 (413)
T ss_pred             HHHHHHC-CCe-ecCCC----------------eeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCC--C---
Confidence            8888875 232 22221                34467887742 211234555554 3446777666443210  0   


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                                   +..+++|||+++.
T Consensus       383 -------------~~~~~~iRls~~~  395 (413)
T PLN00175        383 -------------EDGKNLVRFAFCK  395 (413)
T ss_pred             -------------CCCCCEEEEEEcC
Confidence                         0125799999996

>PLN02656 tyrosine transaminase

Probab=99.92  E-value=3.1e-22  Score=213.22  Aligned_cols=278  Identities=15%  Similarity=0.162  Sum_probs=183.4

Q ss_pred             hhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .....|+++++++++.        +++++++++++|+..++.+++++||+|++++|.|+...    ......|+++..++
T Consensus        73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~i~  148 (409)
T PLN02656         73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYE----LCAAFRHLEVRYVD  148 (409)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHH----HHHHHcCCEEEEEe
Confidence            4567788888888641        35666666679999999999999999999999997643    22344677777765


Q ss_pred             C-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc---
Q 009523          273 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL---  335 (532)
Q Consensus       273 ~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l---  335 (532)
                      .       .|++++++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ..++   
T Consensus       149 ~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  227 (409)
T PLN02656        149 LLPEKGWEVDLDAVEALADQ-NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF  227 (409)
T ss_pred             CCCcCCCCCCHHHHHHHhcc-CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh
Confidence            3       268899998877 6899999999999999975   77889999999999999999764321    1111   


Q ss_pred             -ccCCcEEEECCccccCCCCCcEEEEEEeC--------hHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHH
Q 009523          336 -SLGADLVLHSATKFIGGHNDVLAGSISGS--------GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRV  401 (532)
Q Consensus       336 -~~gaDivv~S~sK~lgg~gd~~gG~lv~~--------~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~  401 (532)
                       .....+++.|+||.|+.+| .+.||++++        +++++.+.......+ ..+...++++...++     .+....
T Consensus       228 ~~~~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~~~~~  305 (409)
T PLN02656        228 GSIVPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDILG-GPATFIQAAVPTILEQTDESFFKKTI  305 (409)
T ss_pred             cccCcEEEEcccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence             1123588999999988776 568888873        477787776544332 234444444444443     233334


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHH-HHHcCCCceeecC
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKF-IDALKIPYIAPSF  476 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~-l~~L~~~~i~vs~  476 (532)
                      ++..+++..+.+.|+.++.+..+..|.                .|..+|+.++..    ......+ ...+...++.+..
T Consensus       306 ~~~~~~r~~~~~~L~~~~~~~~~~~p~----------------gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~p  369 (409)
T PLN02656        306 NILKQSSDICCDRIKEIPCITCPHKPE----------------GSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILP  369 (409)
T ss_pred             HHHHHHHHHHHHHHhhCCCCcCCcCCC----------------eEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEec
Confidence            445566677777887654321111121                356688888521    0112222 3344445777776


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      |..+                      | .++++||+++. +.+++.+.+
T Consensus       370 g~~f----------------------g-~~~~iRi~~~~-~~e~l~eal  394 (409)
T PLN02656        370 GTAV----------------------G-LKNWLRITFAA-DPSSLEEAL  394 (409)
T ss_pred             chhc----------------------C-CCCeEEEEeCC-CHHHHHHHH
Confidence            6442                      1 14789999996 444443333

>PRK04311 selenocysteine synthase; Provisional

Probab=99.92  E-value=3.2e-23  Score=222.47  Aligned_cols=213  Identities=23%  Similarity=0.306  Sum_probs=170.9

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCc---chHHHHHHhcccCCcEEEEeCC---C
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR---KTRIFIETVLPKMGITATVIDP---A  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~---~t~~~~~~~l~~~Gv~v~~vd~---~  274 (532)
                      +..+.+|+.+++++|++++++++||++|+.+++.+ +.+||+||+++.+|.   ++..+ ...++..|+++.+++.   .
T Consensus       127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i-~~~~~~~G~~l~~v~~~~~t  204 (464)
T PRK04311        127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-LAAGKEVIVSRGELVEIGGAFRI-PDVMRQAGARLVEVGTTNRT  204 (464)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-hCCCCEEEEcchhhhhcCcchhh-HHHHHHCCcEEEEECCCCCC
Confidence            45678999999999999999999999999988855 589999999987543   34433 3456778999988875   4


Q ss_pred             CHHHHHHhhcCCCeeEEEEeCCCCC--C--CcccCHHHHHHHHHhCCCEEEEECC---------CC---CCCcccccccC
Q 009523          275 DMEGLEAALNNNNVSLFFTESPTNP--F--LRCVDVKLVSDLCHKKGAIVCIDGT---------FA---TPLNQKALSLG  338 (532)
Q Consensus       275 dle~Le~al~~~~tklV~lesP~Np--t--G~v~dl~~I~~la~~~gi~lIvDet---------~a---~~~~~~~l~~g  338 (532)
                      +++++++++++ +|++|++++++|+  +  +...|+++|+++||+||+++++|+.         ++   .+...+++++|
T Consensus       205 ~~~dle~aI~~-~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~G  283 (464)
T PRK04311        205 HLRDYEQAINE-NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAG  283 (464)
T ss_pred             CHHHHHHhcCc-cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcC
Confidence            68899999987 7999999999998  3  4678999999999999999999994         21   23334667789


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH--Hhh---hcCCCccHH-----------HHHHHHHhHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHH---VLGGALNPN-----------AAYLIIRGMKTLHLRVQ  402 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~--~~~---~~G~~~~~~-----------~a~l~l~~l~tl~~r~~  402 (532)
                      +|++++|++|++|||.   +|+++++++++++++.  +.+   ..+.+++++           .++..+++++++..|++
T Consensus       284 aDiv~fSg~K~LgGp~---~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~  360 (464)
T PRK04311        284 VDLVTFSGDKLLGGPQ---AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPE  360 (464)
T ss_pred             CcEEEecCcccccCCc---eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHH
Confidence            9999999999999884   8999999999887763  111   123334444           34445567778999999


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 009523          403 QQNSTALRMAKILEAHP  419 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p  419 (532)
                      ++.+++++++++|++++
T Consensus       361 ~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        361 ELRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999999875

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.92  E-value=3.2e-22  Score=212.65  Aligned_cols=270  Identities=16%  Similarity=0.148  Sum_probs=184.0

Q ss_pred             chhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          200 NPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga--------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ......++++++++++.        ++.+++++|++|+.+++.+++++||+|++++|+|....    ..+...|+++..+
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~  147 (403)
T TIGR01265        72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYD----TRAAFSGLEVRLY  147 (403)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEe
Confidence            45567789999998873        35667777789999999999999999999999998643    3445668887776


Q ss_pred             CC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc----c-cc
Q 009523          272 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-LS  336 (532)
Q Consensus       272 d~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~----~-l~  336 (532)
                      +.       .|++++++++++ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|.......    + ..
T Consensus       148 ~~~~~~~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  226 (403)
T TIGR01265       148 DLLPEKDWEIDLDGLEALADE-KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMAS  226 (403)
T ss_pred             cCCcccCCccCHHHHHHHhCc-CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhh
Confidence            43       368999998877 6999999999999999987   7889999999999999999976542111    1 11


Q ss_pred             c---CCcEEEECCccccCCCCCcEEEEEEeC-h-H-----HHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHH
Q 009523          337 L---GADLVLHSATKFIGGHNDVLAGSISGS-G-K-----LVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRV  401 (532)
Q Consensus       337 ~---gaDivv~S~sK~lgg~gd~~gG~lv~~-~-~-----li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~  401 (532)
                      +   ..-+++.|+||.++.+| .+.||++++ + +     +++.+...... ....+...+..+...++     .+....
T Consensus       227 ~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~  304 (403)
T TIGR01265       227 FASIVPVLSLGGISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENTPQEFFDGKI  304 (403)
T ss_pred             hccCCcEEEEeecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhChHHHHHHHH
Confidence            1   12488899999988776 467888763 2 2     33334333221 22234444444433442     234445


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH----HHHHHHHHHc-CCCceeecC
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL----TATIKFIDAL-KIPYIAPSF  476 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~----~~~~~~l~~L-~~~~i~vs~  476 (532)
                      ++..+++..+.+.|+.++++. +..|.                .|..+|++++...    .....+.+.+ +..++.+..
T Consensus       305 ~~~~~~~~~l~~~L~~~~~~~-~~~p~----------------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~p  367 (403)
T TIGR01265       305 SVLKSNAELCYEELKDIPGLV-CPKPE----------------GAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLP  367 (403)
T ss_pred             HHHHHHHHHHHHHHhcCCCce-ecCCC----------------ceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeC
Confidence            556677778888888776552 32332                4778899986320    1234555553 455777776


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE  516 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e  516 (532)
                      |..+.                       .+++|||+++.+
T Consensus       368 g~~f~-----------------------~~~~iRis~~~~  384 (403)
T TIGR01265       368 GSAFG-----------------------LPNWVRITITVP  384 (403)
T ss_pred             ccccC-----------------------CCCeEEEEecCC
Confidence            64421                       157899999964

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1.1e-22  Score=213.77  Aligned_cols=285  Identities=17%  Similarity=0.262  Sum_probs=191.0

Q ss_pred             CCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          197 RYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      +|+.+....|+++||++++.+ +.|++++|+ +++..++..++++||.|++++|+|+.....    +...|.++..++. 
T Consensus        63 ~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g~~~~~vp~~  138 (369)
T PRK08153         63 KYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYH----VAGFGGRLVTVPYR  138 (369)
T ss_pred             cCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHH----HHHcCCeEEEeeCC
Confidence            355556789999999999863 456666665 899999999999999999999999875432    3345777766653 


Q ss_pred             ---CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc---cccc--cCCcEEE
Q 009523          274 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ---KALS--LGADLVL  343 (532)
Q Consensus       274 ---~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~---~~l~--~gaDivv  343 (532)
                         .|++++++.+...++++|++++|+||||.+.+.+++.++++.  +++++|+||+|......   .++.  ....+++
T Consensus       139 ~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~  218 (369)
T PRK08153        139 DDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRM  218 (369)
T ss_pred             CCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEE
Confidence               367888776654479999999999999999998887777764  38999999997643211   1111  1234889


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      .|+||.+|.+| ++.||+++++++++.+......+  ..++..++++...++.   +....+...++.+.+.+.|++.+ 
T Consensus       219 ~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g-  294 (369)
T PRK08153        219 RTFSKAYGLAG-ARVGYAIGAPGTIKAFDKVRNHF--GMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANG-  294 (369)
T ss_pred             ecchHhccCcc-hheeeeecCHHHHHHHHHhhcCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence            99999998555 46799999999998887765443  3566666555555532   22223344456666777776542 


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +.  .+|.                .|.++++.++.+...+..+++.+...++.+...+.                     
T Consensus       295 ~~--~~p~----------------~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~---------------------  335 (369)
T PRK08153        295 LT--PLPS----------------ATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGV---------------------  335 (369)
T ss_pred             Cc--cCCC----------------cCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCC---------------------
Confidence            21  1221                36678887753224466777776656666531111                     


Q ss_pred             hcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          501 KYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                        +-.++++|||++. ++.+.+++.|.+++.
T Consensus       336 --~~~~~~iRis~~~~~~~~~~~~al~~~~~  364 (369)
T PRK08153        336 --APLDRCIRVSCGPDEELDLFAEALPEALE  364 (369)
T ss_pred             --CCCCCeEEEecCCHHHHHHHHHHHHHHHH
Confidence              0024699999995 344556666665554

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.91  E-value=3e-22  Score=213.33  Aligned_cols=283  Identities=13%  Similarity=0.104  Sum_probs=180.1

Q ss_pred             hhHHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~g------a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .....|++++|++++      .  ++.++++++++++.+++.+++++||.|+++.|+|.....    .+...|+++..++
T Consensus        74 ~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~----~~~~~g~~~~~~~  149 (409)
T PLN00143         74 GGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVET----YAIFHHLEIRHFD  149 (409)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHH----HHHHcCCEEEEEe
Confidence            445678888888762      2  345555555699999999999999999999999987543    3445677777664


Q ss_pred             C-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----ccc---
Q 009523          273 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---  335 (532)
Q Consensus       273 ~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~l---  335 (532)
                      .       .|+++|++++++ +++++++++|+||||.+++   +++|+++|+++++++|+||+|......    .++   
T Consensus       150 ~~~~~~~~~d~~~l~~~~~~-~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~  228 (409)
T PLN00143        150 LLPEKGWEVDLDAVEAIADE-NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF  228 (409)
T ss_pred             ccCCCCCcCCHHHHHHhccc-CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh
Confidence            2       278999998876 6899999999999999998   567888899999999999998653211    111   


Q ss_pred             c-cCCcEEEECCccccCCCCCcEEEEEEeC-h-HHH------HHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHH
Q 009523          336 S-LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLV------TQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRV  401 (532)
Q Consensus       336 ~-~gaDivv~S~sK~lgg~gd~~gG~lv~~-~-~li------~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~  401 (532)
                      . ....+++.|+||.|+.+| .+.||++++ + .++      +.+...... ....+...+.++...++     .+...+
T Consensus       229 ~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~  306 (409)
T PLN00143        229 ASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTI  306 (409)
T ss_pred             cccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHH
Confidence            1 123489999999988877 567888873 3 333      233332221 11123333333333332     344445


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----CHHHHHHHHH-HcCCCceeecC
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG----DLTATIKFID-ALKIPYIAPSF  476 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g----~~~~~~~~l~-~L~~~~i~vs~  476 (532)
                      ++..++.+.+.+.|++++...   .+   +.|          ..|.++|+.++.    +......++. .+...++.+..
T Consensus       307 ~~~~~~~~~~~~~L~~~~~~~---~~---~~p----------~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~p  370 (409)
T PLN00143        307 NILRAALAFCYDKLKEIPCIM---CP---QKA----------EGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILP  370 (409)
T ss_pred             HHHHHHHHHHHHHHhcCCCCC---CC---CCC----------CeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeC
Confidence            555566677777777654321   11   111          146788999862    1112234433 33555777777


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL  529 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL  529 (532)
                      |..+                      | .++++||+++..  +.++-++.|.++|
T Consensus       371 g~~f----------------------~-~~~~iRi~~~~~~~~l~~al~rl~~~l  402 (409)
T PLN00143        371 GVTV----------------------G-LKNWLRITFAVEQSSLEDGLGRLKSFC  402 (409)
T ss_pred             cccc----------------------C-CCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence            6432                      1 147899999963  2233344444444

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.4e-22  Score=211.17  Aligned_cols=281  Identities=17%  Similarity=0.172  Sum_probs=189.8

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+++....|++++|++++.  ++.++++++++++.+++.+++++||+|++++|+|....    ..++..|+++..++.
T Consensus        55 ~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~v~~  130 (353)
T PRK05387         55 RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYP----VYAGLYGIPYEEIPL  130 (353)
T ss_pred             hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHH----HHHHHcCCEEEEeec
Confidence            456666778999999999986  34555555569999999999999999999999996533    334556888777754


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC-CCEEEEECCCCCCCcccc--c--ccCCcEEE
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKA--L--SLGADLVL  343 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~-gi~lIvDet~a~~~~~~~--l--~~gaDivv  343 (532)
                      +     |++++++     ++++|++++|+||||.+.+.+++.++++.+ ++++|+||+|........  .  ....++++
T Consensus       131 ~~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~  205 (353)
T PRK05387        131 DDDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVV  205 (353)
T ss_pred             CCCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEE
Confidence            2     5666652     367899999999999999999999999875 999999999754211111  1  12346999


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC-CCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCC
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G-~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      .|+||.++.+| ++.|++++++++++.++......+ .+.+....+.+...++   .+....++..++++.+.+.|+++ 
T Consensus       206 ~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-  283 (353)
T PRK05387        206 QTFSKSRSLAG-LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-  283 (353)
T ss_pred             EehhHhhcchh-hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            99999998555 457999999999998877654332 2345554444444442   23344455556777888888876 


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      ++. + +|.                .|+++++.+++  .....|.+.|...++.+..-      ..+             
T Consensus       284 g~~-~-~~~----------------~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~------~~~-------------  324 (353)
T PRK05387        284 GFE-V-LPS----------------KANFVFARHPS--HDAAELAAKLRERGIIVRHF------NKP-------------  324 (353)
T ss_pred             CCe-E-CCC----------------cCcEEEEECCC--CCHHHHHHHHHHCCEEEEEC------CCC-------------
Confidence            332 2 232                35688888764  22345555555556555310      001             


Q ss_pred             HhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          500 LKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                         + .++++|||++. ++.+.+++.|.+++.
T Consensus       325 ---~-~~~~iRis~~~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        325 ---R-IDQFLRITIGTDEEMEALVDALKEILA  352 (353)
T ss_pred             ---C-CCCeEEEEeCCHHHHHHHHHHHHHHhh
Confidence               0 24789999985 334556666665553

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.91  E-value=3e-22  Score=212.68  Aligned_cols=286  Identities=14%  Similarity=0.129  Sum_probs=188.0

Q ss_pred             CchhHHHHHHHHHhhhC-----C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          199 GNPTTVVVEEKMSALEG-----A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~g-----a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +.+...+|+++++++++     .  +++++++++++++.+++.+++++||+|++++|+|....    ..++..|+++..+
T Consensus        71 ~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~  146 (401)
T TIGR01264        71 PTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLY  146 (401)
T ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEe
Confidence            34556788999999886     2  34566666679999999999999999999999997644    3456678887776


Q ss_pred             CC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----ccc-c
Q 009523          272 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S  336 (532)
Q Consensus       272 d~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~l-~  336 (532)
                      +.       .|++++++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    .++ .
T Consensus       147 ~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  225 (401)
T TIGR01264       147 NLLPDKSWEIDLKQLESLIDE-KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLAS  225 (401)
T ss_pred             ecCCccCCCCCHHHHHHHhcc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHH
Confidence            43       368999998876 6899999999999999986   678888899999999999997653211    111 1


Q ss_pred             c---CCcEEEECCccccCCCCCcEEEEEEeCh------HHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHH
Q 009523          337 L---GADLVLHSATKFIGGHNDVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQ  402 (532)
Q Consensus       337 ~---gaDivv~S~sK~lgg~gd~~gG~lv~~~------~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~  402 (532)
                      .   ...+++.|+||.++.+| .+.||+++++      ++++.++..... ....++.....+...+.     .+....+
T Consensus       226 ~~~~~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~l~~~~~  303 (401)
T TIGR01264       226 LSSTVPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVKLSQR-ILGPCTIVQGALPSILLRTPQEYFDGTLS  303 (401)
T ss_pred             cCCCCcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHhCcHHHHHHHHH
Confidence            1   12478999999988776 5688888763      344444443321 12223333333333332     2333344


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-CCCceeecCC
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-KIPYIAPSFG  477 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~~L-~~~~i~vs~G  477 (532)
                      +..++.+.+.+.|++++++. +..|.                .|.++|+.++..    ......+.+.+ +..++.+..|
T Consensus       304 ~~~~~r~~l~~~L~~~~~~~-~~~p~----------------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg  366 (401)
T TIGR01264       304 VLESNAMLCYGALAAVPGLR-PVMPS----------------GAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPG  366 (401)
T ss_pred             HHHHHHHHHHHHHHhCCCCc-ccCCC----------------eeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCc
Confidence            55567777888888765432 22232                477889987521    11234555554 3457777666


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                      +.+.                       .++++||+++..  +.++.++.|.+.+++
T Consensus       367 ~~f~-----------------------~~~~iRis~~~~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       367 SCFE-----------------------YPGFFRVVLTVPVVMMEEACSRIQEFCER  399 (401)
T ss_pred             hhcC-----------------------CCCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            4321                       147899999963  234445555555543

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.91  E-value=2.8e-22  Score=209.00  Aligned_cols=288  Identities=16%  Similarity=0.132  Sum_probs=197.0

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          201 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      ...+++++.+++++|.+  + .++++||++|+..++.+++++||+|++..+.|.+..  +...++..|.++++++.    
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  109 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGE  109 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCC
Confidence            44778999999999973  3 466777899999999999999999999988877632  22345667888887753    


Q ss_pred             -CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccccC
Q 009523          274 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       274 -~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~lg  351 (532)
                       .|+++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+ ...+....++|+++.|+||+++
T Consensus       110 ~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~  189 (356)
T cd06451         110 AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALG  189 (356)
T ss_pred             CCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhcc
Confidence             37899999997646999999999999999999999999999999999999997543 2344445689999999999999


Q ss_pred             CCCCcEEEEEEeChHHHHHHHH---Hhh----------------hcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIRN---LHH----------------VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNST  407 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~---~~~----------------~~G~~~~~~~a~l~l~~l~t-----l~~r~~~~~~~  407 (532)
                      ++.  ..|+++.++++++.+..   ...                ..+++.++...+.+..+++.     +....++..++
T Consensus       190 ~p~--g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~  267 (356)
T cd06451         190 APP--GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRL  267 (356)
T ss_pred             CCC--CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            764  26899999888877653   000                11222333332323333332     22334455567


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCcccccccC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQP  486 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~sl~~~p  486 (532)
                      +.++.+.|++. ++. +..+  +.           ...+.++++.++.+ .....+.+.|... ++.++.|..      +
T Consensus       268 ~~~l~~~L~~~-g~~-~~~~--~~-----------~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gI~~~~g~~------~  325 (356)
T cd06451         268 AKALREGLEAL-GLK-LLAK--PE-----------LRSPTVTAVLVPEG-VDGDEVVRRLMKRYNIEIAGGLG------P  325 (356)
T ss_pred             HHHHHHHHHHc-CCe-eccC--cc-----------cCCCceEEEECCCC-CCHHHHHHHHHHhCCEEEecccc------c
Confidence            77788888765 332 2111  10           01234556666532 2345666666554 666655421      0


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .                 .++.||+|++..++++.++.+.++|+.
T Consensus       326 ~-----------------~~~~iRis~~~~~~~e~v~~~~~~l~~  353 (356)
T cd06451         326 T-----------------AGKVFRIGHMGEATREDVLGVLSALEE  353 (356)
T ss_pred             c-----------------cCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            0                 246899999887777777777777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.91  E-value=2e-22  Score=213.43  Aligned_cols=286  Identities=17%  Similarity=0.192  Sum_probs=189.0

Q ss_pred             CCCCchh-HHHHHHHHHhhh----C----C--CcEEEeCCH-HHHHHHHHHHhccCCCE--EEEcCCCCcchHHHHHHhc
Q 009523          196 GRYGNPT-TVVVEEKMSALE----G----A--ESTVIMASG-MSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~----g----a--~~~i~~sSG-~~Ai~~al~all~~Gd~--VIv~~~~y~~t~~~~~~~l  261 (532)
                      .+|+.+. ...|++++|+++    |    .  ++.|++++| ++++..++.+++++||+  |+++.|+|....    ..+
T Consensus        58 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~----~~~  133 (393)
T TIGR03538        58 STYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYE----GAA  133 (393)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchH----HHH
Confidence            3455443 567888888876    2    2  235666565 49999999999999986  999999998754    334


Q ss_pred             ccCCcEEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc
Q 009523          262 PKMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN  331 (532)
Q Consensus       262 ~~~Gv~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~  331 (532)
                      ...|+++..++.       .|++++++++.+ ++|+|++++|+||||.+++   +++|+++|+++|++||+||+|.....
T Consensus       134 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~  212 (393)
T TIGR03538       134 LLAGAEPYFLNCTAENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYF  212 (393)
T ss_pred             HhcCCeEEEeeccccCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhccc
Confidence            556788777753       267889888876 6999999999999999998   67888889999999999999764321


Q ss_pred             c---cc---c----cc-----CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-
Q 009523          332 Q---KA---L----SL-----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-  395 (532)
Q Consensus       332 ~---~~---l----~~-----gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-  395 (532)
                      .   .+   .    ..     ...+++.|+||.++.+| .+.||+++++++++++.......+...++..+..+...+. 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  291 (393)
T TIGR03538       213 DEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWND  291 (393)
T ss_pred             CCCCCCcCHHHhcccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC
Confidence            1   01   0    11     12489999999887666 5689999999999988876654554455555444443332 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCce
Q 009523          396 --TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYI  472 (532)
Q Consensus       396 --tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i  472 (532)
                        .+....+...++...+.+.|+++  + .+..|                ..|..+|++++.+   ...|.+.+ +..++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~L~~~--~-~~~~p----------------~gg~f~~~~~~~~---~~~~~~~l~~~~gV  349 (393)
T TIGR03538       292 EQHVRENRALYREKFAAVLEILGQV--L-DLELP----------------DAGFYLWPKVPGD---DEAFARALYEEENV  349 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh--C-cccCC----------------CeeEEEEEECCCC---HHHHHHHHHHHCCE
Confidence              23233334445566677777653  1 11222                1477889998722   24455554 34688


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      .+..|..+..-.. .              ..-..++||||++. +.+++.+.+
T Consensus       350 ~v~pg~~f~~~~~-~--------------~~~~~~~~Ris~~~-~~~~l~~~l  386 (393)
T TIGR03538       350 TVLPGRFLAREAE-G--------------VNPGEGRVRIALVA-PLEECVEAA  386 (393)
T ss_pred             EEeCCcccccccc-C--------------CCCCCCEEEEEecC-CHHHHHHHH
Confidence            8888865421100 0              00124799999986 344443333

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=3.4e-23  Score=217.43  Aligned_cols=275  Identities=15%  Similarity=0.200  Sum_probs=191.6

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+++....|++.||++++.+ +.|++++|+ +++..++.+++++||+|++++|+|....    ..+...|+++..++.
T Consensus        59 ~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~  134 (366)
T PRK01533         59 ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYR----HHAIIEGCEVKEVAL  134 (366)
T ss_pred             CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCEEEEeec
Confidence            3467777889999999999863 456565665 9999999999999999999999998644    345567888887764


Q ss_pred             ----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHH---hCCCEEEEECCCCCCCcc----cc---c-ccC
Q 009523          274 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH---KKGAIVCIDGTFATPLNQ----KA---L-SLG  338 (532)
Q Consensus       274 ----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~---~~gi~lIvDet~a~~~~~----~~---l-~~g  338 (532)
                          .|+++|++++++ ++++|++++|+||||.+++.+++.++++   +++ ++|+||+|......    ..   + ..+
T Consensus       135 ~~~~~d~~~l~~~~~~-~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~  212 (366)
T PRK01533        135 NNGVYDLDEISSVVDN-DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHK  212 (366)
T ss_pred             CCCCcCHHHHHHHhCc-CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCC
Confidence                378999999877 6999999999999999999776666654   444 67889997542211    11   1 123


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L  415 (532)
                      ..+++.|+||.+|.+| .+.||+++++++++.++....  ....+.....++...++.   .....+...++.+++.+.|
T Consensus       213 ~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l  289 (366)
T PRK01533        213 NILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVVRL--PFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFC  289 (366)
T ss_pred             CEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999998666 457899999999998887653  234566665555555532   2222334445666677777


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      +.+ ++. + +|                ..|+++++.+++    ...+.+.|...|+.+..  +                
T Consensus       290 ~~~-g~~-~-~~----------------~~~nf~~~~~~~----~~~~~~~l~~~GI~Vr~--~----------------  328 (366)
T PRK01533        290 KEN-EIP-F-YQ----------------SQTNFIFLPVEN----GGEIYEACAHAGFIIRP--F----------------  328 (366)
T ss_pred             HhC-CCc-c-CC----------------CcCcEEEEeCCC----HHHHHHHHHHCCcEEcc--C----------------
Confidence            664 221 1 11                137789998853    23455555555655442  0                


Q ss_pred             HHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                                +++||||+|. ++.+.+++.|++.++
T Consensus       329 ----------~~~iRis~~~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        329 ----------PNGVRITVGTREQNEGVISVLQQHFE  354 (366)
T ss_pred             ----------CCceEEeCCCHHHHHHHHHHHHHHHH
Confidence                      3579999996 456777777777654

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.91  E-value=3.9e-22  Score=211.16  Aligned_cols=285  Identities=13%  Similarity=0.145  Sum_probs=188.2

Q ss_pred             hHHHHHHHHHhhhC----C-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALEG----A-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~g----a-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ....|+++++++++    .     ++++++++|++|+.+++.+++++||+|++++|+|.+...    .++..|+++..++
T Consensus        68 g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~~~  143 (391)
T PRK07309         68 GLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEP----IVNLVGAEIVEID  143 (391)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHH----HHHHcCCEEEEEe
Confidence            36778888888763    2     246666666799999999999999999999999998543    3445688877775


Q ss_pred             C------CCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----c-ccc-
Q 009523          273 P------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----Q-KAL-  335 (532)
Q Consensus       273 ~------~dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~-~~l-  335 (532)
                      .      .|++.|++++++  .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|.....    . ... 
T Consensus       144 ~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~  223 (391)
T PRK07309        144 TTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAE  223 (391)
T ss_pred             cCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHH
Confidence            3      268899988864  25899999999999999987   77888899999999999999765321    1 111 


Q ss_pred             -ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHH
Q 009523          336 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR  410 (532)
Q Consensus       336 -~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~  410 (532)
                       .....+++.|+||.+|.+| ++.|++++++++++.+...........+......+...++.    .....++..+++..
T Consensus       224 ~~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  302 (391)
T PRK07309        224 YLPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDY  302 (391)
T ss_pred             hccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Confidence             1234589999999998665 56899999999998887654433333444544444444432    11112333455666


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHH-cCCCceeecCCCcccccccCcc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDA-LKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~-L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      +.+.|+++ ++ .+..|.                .|..+|+.++.+. .....+.+. ++..++.+..|..+.       
T Consensus       303 ~~~~l~~~-~~-~~~~p~----------------gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-------  357 (391)
T PRK07309        303 IIEKMTDL-GF-KIIKPD----------------GAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFG-------  357 (391)
T ss_pred             HHHHHHHC-CC-eecCCC----------------eeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhC-------
Confidence            77777765 22 222221                3445788876421 122344433 233467777664421       


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                                    ...++++||+++.+  +.++.++.|.++++
T Consensus       358 --------------~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~  387 (391)
T PRK07309        358 --------------PYGEGYVRLSYAASMETIKEAMKRLKEYME  387 (391)
T ss_pred             --------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence                          01257999999863  33445555555554

>PRK08912 hypothetical protein; Provisional

Probab=99.91  E-value=3.6e-22  Score=210.97  Aligned_cols=278  Identities=17%  Similarity=0.185  Sum_probs=185.8

Q ss_pred             CCCCch-hHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNP-TTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .+|+.+ ...+|++++++++    |.    + +.++++++++|+..++.+++++||+|+++.|+|....    ..++..|
T Consensus        57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g  132 (387)
T PRK08912         57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYL----PLIRRAG  132 (387)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcC
Confidence            345554 3567888888765    32    3 4556666679999999999999999999999998754    3456678


Q ss_pred             cEEEEeCC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----c
Q 009523          266 ITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----Q  332 (532)
Q Consensus       266 v~v~~vd~------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~  332 (532)
                      +++..++.      .|++++++.+.+ ++++|++++|+||||.+.+   +++|.++|+++++++|+|++|.....    .
T Consensus       133 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  211 (387)
T PRK08912        133 GVPRLVRLEPPHWRLPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRH  211 (387)
T ss_pred             CEEEEEecCcccCcCCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCC
Confidence            88776653      268999998877 6999999999999999998   56688999999999999999753211    0


Q ss_pred             cc---c-c-cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH----HHHHHHHHH
Q 009523          333 KA---L-S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQ  403 (532)
Q Consensus       333 ~~---l-~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l----~tl~~r~~~  403 (532)
                      .+   . . .+.++++.|+||.+|.+| .+.|++++++++++.+.......+...++.....+...+    +.+....++
T Consensus       212 ~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  290 (387)
T PRK08912        212 IPLMTLPGMRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRAD  290 (387)
T ss_pred             cChhhCCCccCceEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHH
Confidence            11   1 1 245799999999998665 468999999999988876655433333433333333322    222333344


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-C-HHHHHHHHHHc-CCCceeecCCCcc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-D-LTATIKFIDAL-KIPYIAPSFGGCE  480 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~-~~~~~~~l~~L-~~~~i~vs~G~~~  480 (532)
                      ..++.+.+.+.|+++ ++. +..|                ..|.++|+.++. + ......|.+.+ +..++.+..|..+
T Consensus       291 ~~~~~~~l~~~L~~~-g~~-~~~~----------------~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f  352 (387)
T PRK08912        291 LARSRDRLAAGLRRI-GFP-VLPS----------------QGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAF  352 (387)
T ss_pred             HHHHHHHHHHHHHhC-CCc-ccCC----------------CcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhh
Confidence            556677777888775 231 2111                134578888863 1 12345566554 4557777776543


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE  516 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e  516 (532)
                      ...                   +-..+++||+++.+
T Consensus       353 ~~~-------------------~~~~~~iRl~~~~~  369 (387)
T PRK08912        353 YEE-------------------DPVTSVVRFCFAKR  369 (387)
T ss_pred             CCC-------------------CCCCCEEEEEEeCC
Confidence            210                   00247999999974

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.1e-22  Score=212.53  Aligned_cols=278  Identities=18%  Similarity=0.225  Sum_probs=187.0

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG-~~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +.||+++...+|++++|+++|.+ +.|++++| ++++..++.+++++| |+|+++.|+|....    ..++..|+++..+
T Consensus        54 ~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v  129 (354)
T PRK04635         54 LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKAL  129 (354)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence            57788888899999999999863 34555555 599999999999999 89999999997533    3456678888887


Q ss_pred             CCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC-CCEEEEECCCCCCCcccc----c-ccCCc
Q 009523          272 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKA----L-SLGAD  340 (532)
Q Consensus       272 d~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~-gi~lIvDet~a~~~~~~~----l-~~gaD  340 (532)
                      +.+     |++.+++ + + ++++|++++|+||||.+.+.+++.++++.. ++++|+||+|........    . ....-
T Consensus       130 ~~~~~~~~~~~~l~~-~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~  206 (354)
T PRK04635        130 PLTADYQLPLDYIEQ-L-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNL  206 (354)
T ss_pred             ecCCCCCCCHHHHHh-c-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCE
Confidence            643     5677763 4 4 699999999999999999999999998763 799999999765432111    1 11234


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l-----~tl~~r~~~~~~~a~~la~~L  415 (532)
                      +++.|+||++|.+| .+.|++++++++++.+......++  .+......+...+     +.+..+.++..++++.+.+.|
T Consensus       207 iv~~S~SK~~~l~G-lRlG~~i~~~~~~~~l~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  283 (354)
T PRK04635        207 VVLRTLSKAFALAG-ARCGFTLANEELIEILMRVIAPYP--VPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL  283 (354)
T ss_pred             EEEechHHHhhhhH-HHHhhhhCCHHHHHHHHhhcCCCC--CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999998555 457899999999988876443222  2322222223333     334444555667778888888


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++++.+. + +|.                .|+++++.+++ ..   .+.+.+...++.+..++.      +         
T Consensus       284 ~~~~~~~-~-~~~----------------~g~f~~~~~~~-~~---~~~~~l~~~gv~v~~~~~------~---------  326 (354)
T PRK04635        284 SMYGGAK-V-LEG----------------NGNYVLAKFDD-VD---AVFKALWDAGIVARAYKD------P---------  326 (354)
T ss_pred             HhCCCce-E-CCC----------------CCcEEEEECCC-HH---HHHHHHHHCCEEEEECCC------C---------
Confidence            8876542 3 222                25678888863 22   333444444655542210      0         


Q ss_pred             HHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                             + .+++||||++.+   +.++.|.++|+
T Consensus       327 -------~-~~~~lRis~~~~---e~~~~l~~al~  350 (354)
T PRK04635        327 -------R-LANCIRFSFSNR---AETDKLIGLIR  350 (354)
T ss_pred             -------C-CCCeEEEEeCCH---HHHHHHHHHHH
Confidence                   0 246899999852   33445555544

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.91  E-value=4e-22  Score=212.35  Aligned_cols=285  Identities=20%  Similarity=0.198  Sum_probs=193.9

Q ss_pred             CCc-hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          198 YGN-PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       198 ~~~-p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      +++ +...+||++||+++|.+++++++||++|+..++..+.+  +||.|+++...|.+...    .+...|.++..++.+
T Consensus        87 ~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~  162 (410)
T PRK13392         87 SGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHN  162 (410)
T ss_pred             ccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCC
Confidence            444 36789999999999999999999999999888887754  89988887777766543    334567787777767


Q ss_pred             CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-cc--------ccccCCcEE
Q 009523          275 DMEGLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QK--------ALSLGADLV  342 (532)
Q Consensus       275 dle~Le~al~---~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~--------~l~~gaDiv  342 (532)
                      |.+.+++.++   ..++++|++++|+||+|.+.|+++|.++|+++|+++|+||+|+.+.. ..        ......|++
T Consensus       163 d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div  242 (410)
T PRK13392        163 DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMI  242 (410)
T ss_pred             CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEE
Confidence            7777776664   22689999999999999999999999999999999999999874321 11        111246899


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHh
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~  417 (532)
                      +.|++|++|..    ||++++++++++.++.....  ++...++..++.+...++.   ...+.++..++++++.+.|++
T Consensus       243 ~~tlsK~~g~~----GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~  318 (410)
T PRK13392        243 QGTLAKAFGCL----GGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNA  318 (410)
T ss_pred             EEEChHhhhcc----cchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999864    58998999999888765542  3444555555544444443   333445566777888888876


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccccccCCCH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQ  496 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~  496 (532)
                      . ++. + +|.                .++++.+.++ .......+.+.|. ..++.+..+..      |..      + 
T Consensus       319 ~-g~~-~-~~~----------------~~~~~~i~~~-~~~~~~~~~~~L~~~~GI~v~~~~~------p~~------~-  365 (410)
T PRK13392        319 N-GIP-V-MPS----------------PSHIVPVMVG-DPTLCKAISDRLMSEHGIYIQPINY------PTV------P-  365 (410)
T ss_pred             c-CCC-C-CCC----------------CCCEEEEEeC-CHHHHHHHHHHHHHhCCEEEeeeCC------CCC------C-
Confidence            4 221 1 111                2456666664 2234556776663 45666654321      110      0 


Q ss_pred             HHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          497 SERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       497 ~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                             -..+.||+++....+++.++.+.++|+
T Consensus       366 -------~~~~~lRis~~~~~t~edid~l~~aL~  392 (410)
T PRK13392        366 -------RGTERLRITPTPLHDDEDIDALVAALV  392 (410)
T ss_pred             -------CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence                   123689999876554444455544443

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.91  E-value=2.6e-22  Score=209.87  Aligned_cols=282  Identities=17%  Similarity=0.187  Sum_probs=188.2

Q ss_pred             CCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          197 RYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      +|+.+....|++++|++++.+ +.|++++| ++++..++.++ .+|+ +++..|.|....    ..++..|+++..++.+
T Consensus        51 ~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~  124 (356)
T PRK08056         51 RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLR  124 (356)
T ss_pred             cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecc
Confidence            456666889999999999863 34555555 58998888876 6776 667788887533    3456678888877532


Q ss_pred             -----CH-HHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----ccc-ccCC
Q 009523          275 -----DM-EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL-SLGA  339 (532)
Q Consensus       275 -----dl-e~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~~l-~~ga  339 (532)
                           ++ +++++.+.+ ++++|++++|+||||.+.+   +++|+++|+++++++|+|++|......     ..+ ....
T Consensus       125 ~~~~~~~~~~~~~~~~~-~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  203 (356)
T PRK08056        125 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPH  203 (356)
T ss_pred             cccCCCccHHHHHhccC-CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCC
Confidence                 22 355566665 7999999999999999999   778899999999999999997654321     111 2346


Q ss_pred             cEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L  415 (532)
                      ++++.|+||+++.+| .+.||+++ ++++++.++.....  ...+...++.+...++   ......++..++++.+.+.|
T Consensus       204 ~i~~~S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L  280 (356)
T PRK08056        204 LWVLRSLTKFYAIPG-LRLGYLVNSDDAAVARMRRQQMP--WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL  280 (356)
T ss_pred             EEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhCCC--CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999666 45788887 45777777654322  2334444444433332   22222344557777788888


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++++++. +. |.                .|+.+|+.++.+   ...|.+.|...++.+..|..+.              
T Consensus       281 ~~~~~~~-~~-~~----------------~~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~~~f~--------------  325 (356)
T PRK08056        281 CALPLLT-VW-PG----------------RANYLFLRCERP---DIDLQRALLTQRILIRSCANYP--------------  325 (356)
T ss_pred             hcCCCcE-Ec-CC----------------CCcEEEEEcCCC---hHHHHHHHHHCCeEEEECCCCC--------------
Confidence            8766543 22 21                256788888642   2345555555577777664321              


Q ss_pred             HHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                             +...++|||+++- ++.+.+++.|++.++
T Consensus       326 -------~~~~~~iRis~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        326 -------GLDSRYYRVAIRSAAENERLLAALRNVLT  354 (356)
T ss_pred             -------CCCCCEEEEEEcCHHHHHHHHHHHHHHHc
Confidence                   1235799999997 556777777776653

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.91  E-value=2.5e-22  Score=210.96  Aligned_cols=299  Identities=22%  Similarity=0.247  Sum_probs=210.3

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGAES---TVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga~~---~i~~sSG~~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      +.+++......+++++.+++++|++.   .+++++++.+++.++.++   +++||+|++....|++....+....++.|+
T Consensus        35 ~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~  114 (371)
T PF00266_consen   35 SHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGA  114 (371)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTE
T ss_pred             cchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchh
Confidence            33444456778889999999999854   566778889999999998   799999999999999988777777778899


Q ss_pred             EEEEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCc
Q 009523          267 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGAD  340 (532)
Q Consensus       267 ~v~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaD  340 (532)
                      +++.++.     .|++++++++++ ++++|++...+|.+|.+.|+++|.++||++|+++++|.+++.+ ...+..++|+|
T Consensus       115 ~v~~i~~~~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D  193 (371)
T PF00266_consen  115 EVRVIPADPGGSLDLEDLEEALNP-DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGAD  193 (371)
T ss_dssp             EEEEEEEGTTSSCSHHHHHHHHHT-TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTES
T ss_pred             hhccccccccchhhhhhhhhhhcc-ccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccc
Confidence            9988753     378999999987 7999999999999999999999999999999999999998765 34666678999


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHHH--
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL--  397 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~tl--  397 (532)
                      +++.|.+|.+||+|   .|+++.+++.+++++....                     ..+++.+....+.+..+++.+  
T Consensus       194 ~~~~s~~Kl~gp~G---~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~  270 (371)
T PF00266_consen  194 FLVFSSHKLGGPPG---LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEE  270 (371)
T ss_dssp             EEEEESTSTTSSST---EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHH
T ss_pred             eeeecccccCCCCc---hhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhc
Confidence            99999999555555   6888888888887742111                     112344443333333333332  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009523          398 ---HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP  474 (532)
Q Consensus       398 ---~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~v  474 (532)
                         ....++..+.++++.+.|++.+.+. +.-|.-   +         ...+++++|.+++.  ....+...|...++.+
T Consensus       271 ~g~~~i~~~~~~l~~~~~~~l~~~~~~~-~~~~~~---~---------~~~~~i~~~~~~~~--~~~~~~~~L~~~~I~~  335 (371)
T PF00266_consen  271 IGIERIRERIRELAEYLREALEELPGIE-VLGPDD---E---------PRRPSIVSFNLPGS--DADDVVKYLEERGIAV  335 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTEE-ESSSSC---G---------GBGTTEEEEEETTS--SHHHHHHHHHHHTEEE
T ss_pred             cccccchhhhhhHHHHHHhhhhcCCcee-Eeeecc---c---------ccccceEEEeecCC--CHHHHHHHHhhcCEEE
Confidence               2233455677888888888888764 322211   1         12578999999762  2233334444336777


Q ss_pred             cCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          475 SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       475 s~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      +.|..+..   |.           ....+. ++.||+|++..++++.++.|
T Consensus       336 ~~G~~~~~---~~-----------~~~~~~-~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  336 STGSACAG---PS-----------LDILGM-GGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             EESTTTCH---HH-----------HHHHHT-TTEEEEE-GTTSSHHHHHHH
T ss_pred             eccCcccH---HH-----------HHHhCC-CCEEEEeccCCCCHHHHhhC
Confidence            77654320   10           111122 38999999999988777654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK07777 aminotransferase; Validated

Probab=99.91  E-value=1.1e-21  Score=207.34  Aligned_cols=282  Identities=16%  Similarity=0.172  Sum_probs=184.3

Q ss_pred             hhHHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l----~ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +...+|++.++++    +|.    + +.+++++|++|+.+++.+++++||+|+++.|.|+....    .+...|.++..+
T Consensus        61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~----~~~~~g~~~~~~  136 (387)
T PRK07777         61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAA----VIAMAGAHRVPV  136 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH----HHHHCCCEEEEe
Confidence            3466788888775    453    2 46666677799999999999999999999999987543    334456665555


Q ss_pred             CC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-------cc
Q 009523          272 DP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QK  333 (532)
Q Consensus       272 d~--------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-------~~  333 (532)
                      +.        .|+++|++++++ ++++|++++|+||||.+++   +++|.++|+++++++|+|++|.....       ..
T Consensus       137 ~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~  215 (387)
T PRK07777        137 PLVPDGRGFALDLDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLA  215 (387)
T ss_pred             ecCCccCCCcCCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHh
Confidence            32        378999998877 6999999999999999986   77889999999999999999754221       11


Q ss_pred             cc--ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH----HHHHHHHHHHHHH
Q 009523          334 AL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST  407 (532)
Q Consensus       334 ~l--~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l----~tl~~r~~~~~~~  407 (532)
                      .+  ..+.++++.|+||.+|.+| .+.|++++++++++.+...........+......+...+    +.+....+...++
T Consensus       216 ~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  294 (387)
T PRK07777        216 TLPGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAK  294 (387)
T ss_pred             hCCCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            11  1346799999999998665 467899999999888876554333222222222222222    2222333445567


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHc-CCCceeecCCCccccccc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDAL-KIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~  485 (532)
                      ++.+.+.|+++ ++. +..|                ..|.++|+.+++ +......|.+.| +..++.+..|..+.... 
T Consensus       295 ~~~l~~~L~~~-~~~-~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~-  355 (387)
T PRK07777        295 RDRLAAGLAEA-GFE-VHDS----------------AGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPA-  355 (387)
T ss_pred             HHHHHHHHHhC-CCC-ccCC----------------CcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCC-
Confidence            77777888764 221 1111                134567777652 112345666666 34578888775432100 


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                                       .-.++++||+++. ..+++.+.+
T Consensus       356 -----------------~~~~~~~Ri~~~~-~~~~l~~~l  377 (387)
T PRK07777        356 -----------------DAWNHLVRFAFCK-RDDTLDEAI  377 (387)
T ss_pred             -----------------cCCCCeEEEEecC-CHHHHHHHH
Confidence                             0124789999997 344443333

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.91  E-value=6e-22  Score=213.61  Aligned_cols=284  Identities=18%  Similarity=0.214  Sum_probs=197.8

Q ss_pred             hhHHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~----ga---~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .....|++.+++++    |.   ++.|++++|+ +|+.++++.+++|||+|++++|+|.+...    .++..|+++..++
T Consensus       132 ~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~----~~~~~g~~~~~vp  207 (459)
T COG1167         132 AGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQ----ALEALGARVIPVP  207 (459)
T ss_pred             CCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHH----HHHHcCCcEEecC
Confidence            34455666666654    32   3456665665 99999999999999999999999998664    4556678877776


Q ss_pred             CC----CHHHHHHhhcCCCeeEEEEeCCC--CCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCc----c---ccc-
Q 009523          273 PA----DMEGLEAALNNNNVSLFFTESPT--NPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN----Q---KAL-  335 (532)
Q Consensus       273 ~~----dle~Le~al~~~~tklV~lesP~--NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~----~---~~l-  335 (532)
                      .+    |+++|++.++.+++|++|+ +|+  ||||.+++.+   +|.++|++||+++|+|+.|+....    .   ..+ 
T Consensus       208 ~d~~G~~~e~le~~~~~~~~k~~y~-~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld  286 (459)
T COG1167         208 VDEDGIDPEALEEALAQWKPKAVYV-TPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALD  286 (459)
T ss_pred             CCCCCCCHHHHHHHHhhcCCcEEEE-CCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhC
Confidence            43    8999999998777999999 554  9999999864   799999999999999999765321    1   111 


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHH----Hh-HHHHHHHHHHHH-HHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII----RG-MKTLHLRVQQQN-STAL  409 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l----~~-l~tl~~r~~~~~-~~a~  409 (532)
                      ..+..|++.||||.+.++  ++.||+++++++++++...........+.+.+..+.    .| .+....++++.. +..+
T Consensus       287 ~~~rViy~gSFSK~l~Pg--lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~  364 (459)
T COG1167         287 APGRVIYLGSFSKTLAPG--LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRD  364 (459)
T ss_pred             CCCCEEEEeeehhhcccc--cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            236779999999999976  478999999999999887766655555555432222    22 333333444333 4556


Q ss_pred             HHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC-CCcccccccCc
Q 009523          410 RMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF-GGCESIVDQPA  487 (532)
Q Consensus       410 ~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~-G~~~sl~~~pa  487 (532)
                      .+.+.|+++ |....+..|.                .|.++|++++.+ .+...++..+...++.+.. |..+...    
T Consensus       365 ~l~~~L~~~~~~~~~~~~p~----------------gG~flwl~l~~~-~~~~~l~~~a~~~gv~i~~~g~~f~~~----  423 (459)
T COG1167         365 ALLEALAEYLPELATWTRPE----------------GGLFLWLELPEG-IDARELLAAALEKGVVVTPLGSAFSAD----  423 (459)
T ss_pred             HHHHHHHHhCCCCeeeecCC----------------ceEEEEEEcCCC-CCHHHHHHHHHHCCCEEEcCCccccCC----
Confidence            677788776 3344444443                467899999864 3455666666555666666 5443210    


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHH
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQ  527 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~  527 (532)
                                     +-..+.+||+++..+.+++.+.+..
T Consensus       424 ---------------~~~~~~~Rl~~s~~~~e~i~~gi~~  448 (459)
T COG1167         424 ---------------GDPRNGLRLSFSSPSEEEIEEGIKR  448 (459)
T ss_pred             ---------------CCCCCeEEEEcCCCCHHHHHHHHHH
Confidence                           0025689999998777666555553

>PRK07683 aminotransferase A; Validated

Probab=99.91  E-value=1.8e-21  Score=205.86  Aligned_cols=276  Identities=14%  Similarity=0.158  Sum_probs=183.4

Q ss_pred             chhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          200 NPTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .+....||+++++++    |.    + +.++++++++|+.+++.+++++||+|+++.|+|......    ++..|+++.+
T Consensus        64 ~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~  139 (387)
T PRK07683         64 NAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPI----IRLCGAKPVF  139 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHH----HHHcCCEEEE
Confidence            355678888888886    32    2 455555667999999999999999999999999875533    3456888888


Q ss_pred             eCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc---c-cc-
Q 009523          271 IDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LS-  336 (532)
Q Consensus       271 vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~---~-l~-  336 (532)
                      ++.+      |.+++++.+++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......   + .. 
T Consensus       140 ~~~~~~~~~~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  218 (387)
T PRK07683        140 IDTRSTGFRLTAEALENAITE-KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHF  218 (387)
T ss_pred             eecCcccCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhc
Confidence            7643      56889998877 6999999999999999987   6788899999999999999987542111   1 11 


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTAL  409 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~  409 (532)
                         .+..+++.|+||.+|.+| ++.||+++++++++.+...........+...+.++...++.    +....++..++++
T Consensus       219 ~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  297 (387)
T PRK07683        219 PEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRD  297 (387)
T ss_pred             cCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence               134689999999998555 57899999999998887654332333344444443333332    2222333446666


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH-cCCCceeecCCCcccccccCcc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA-LKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~-L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      .+.+.|.+. ++. +..|.                .|.+++..+++.......|... ++..++.+..|..+.       
T Consensus       298 ~~~~~l~~~-~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~-------  352 (387)
T PRK07683        298 YVYNRLISM-GLD-VEKPT----------------GAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFS-------  352 (387)
T ss_pred             HHHHHHHHc-CCc-ccCCC----------------eeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhC-------
Confidence            777777764 221 11111                3446676665311122334433 455577777765431       


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL  521 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl  521 (532)
                                    +..++++||+++. +.+++
T Consensus       353 --------------~~~~~~~Ri~~~~-~~~~~  370 (387)
T PRK07683        353 --------------EYGEGYVRLSYAY-SIETL  370 (387)
T ss_pred             --------------CCCCCeEEEEecC-CHHHH
Confidence                          0125799999997 44443

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.91  E-value=2.7e-21  Score=195.45  Aligned_cols=313  Identities=20%  Similarity=0.202  Sum_probs=213.1

Q ss_pred             cccCChHHHHHHhh--cccCCCCCCCCCc-hhHHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHhccCCCEEEEc
Q 009523          174 YFFKKTAELIDFKE--KRRASFEYGRYGN-PTTVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTT  246 (532)
Q Consensus       174 ~~~~~~~~~~~~~~--~~~~~~~Y~R~~~-p~~~~Le~~lA~l~ga---~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~  246 (532)
                      ..|..+..+.+...  ..++.|.|+ +.+ ...+++.+...+..+-   ++.++++.| +.++..+++++.++||.|++.
T Consensus        35 MDf~~pp~i~~Al~~rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~  113 (388)
T COG1168          35 MDFPTPPEIIEALRERVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQ  113 (388)
T ss_pred             ccCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEec
Confidence            34555544333222  134668898 554 4778888888887764   355666555 599999999999999999999


Q ss_pred             CCCCcchHHHHHHhcccCCcEEEEeCC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHh
Q 009523          247 TDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK  315 (532)
Q Consensus       247 ~~~y~~t~~~~~~~l~~~Gv~v~~vd~--------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~  315 (532)
                      .|.|++.++.+    +..|-++...+.        .|.++||+++.+.+++++++|+|+||+|++..   +.+|.+||.+
T Consensus       114 tPvY~PF~~~i----~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~k  189 (388)
T COG1168         114 TPVYPPFYNAI----KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLR  189 (388)
T ss_pred             CCCchHHHHHH----hhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHH
Confidence            99999876544    444555555542        28999999998767899999999999999985   7788999999


Q ss_pred             CCCEEEEECCCCCCCcc-------cccc-c--CCcEEEECCccccCCCCCcEEEEEEeChHHHHHH-HHHhhhcCCCccH
Q 009523          316 KGAIVCIDGTFATPLNQ-------KALS-L--GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI-RNLHHVLGGALNP  384 (532)
Q Consensus       316 ~gi~lIvDet~a~~~~~-------~~l~-~--gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l-~~~~~~~G~~~~~  384 (532)
                      ||++||.||.++..+..       ..+. .  ..-+.+.|.||.|+-.|.-.+-+++.++++.++. +++.......++.
T Consensus       190 h~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~  269 (388)
T COG1168         190 HGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSA  269 (388)
T ss_pred             cCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCch
Confidence            99999999997653221       1111 1  2237888999999977654455666777765544 3343333344444


Q ss_pred             HHHHH---H-HHhHHHHHHHHHHHHHHHHHHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---C
Q 009523          385 NAAYL---I-IRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---D  456 (532)
Q Consensus       385 ~~a~l---~-l~~l~tl~~r~~~~~~~a~~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~  456 (532)
                      +...+   + ..|-.++..-.+-...|...+.+.|.++ |+|+ +.-|.                +..++|+.+..   +
T Consensus       270 lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~-v~~p~----------------gTYL~WLD~r~l~l~  332 (388)
T COG1168         270 LGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVK-VTEPQ----------------GTYLAWLDCRELGLD  332 (388)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EecCC----------------CceeeeeeccccCCC
Confidence            43222   1 2345566666777789999999999876 7774 43332                34588888764   2


Q ss_pred             HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009523          457 LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA  531 (532)
Q Consensus       457 ~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~~  531 (532)
                      ....+.++..  ..+++++.|..+.-                     -..|++|+.++.  ...++.++.|.++|+.
T Consensus       333 d~~l~~~ll~--~akVal~~G~~FG~---------------------~g~gf~RlN~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         333 DSELAEFLLE--EAKVALSPGSTFGE---------------------EGSGFVRLNFACPRAILEEALERLKRALKK  386 (388)
T ss_pred             hHHHHHHHHH--hhcEeccCCCccCc---------------------CCCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence            2344444432  34678888855321                     126899999996  4567778888888765

>PRK09148 aminotransferase; Validated

Probab=99.91  E-value=7.1e-22  Score=210.21  Aligned_cols=285  Identities=13%  Similarity=0.114  Sum_probs=185.7

Q ss_pred             CCCCch-hHHHHHHHHHhhh----CC----CcEEEeCC-HHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNP-TTVVVEEKMSALE----GA----ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~----ga----~~~i~~sS-G~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .+|+.+ ....|++++|+++    |.    ++.|++++ +++++..++.+++++||+|++++|+|.....    .+...|
T Consensus        62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~----~~~~~g  137 (405)
T PRK09148         62 HRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAF----GFIMAG  137 (405)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH----HHHhcC
Confidence            445543 3567888888776    42    32445555 4599999999999999999999999988543    334568


Q ss_pred             cEEEEeCCC----CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          266 ITATVIDPA----DMEGLEAALN---NNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       266 v~v~~vd~~----dle~Le~al~---~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                      +++..++.+    ++++++++++   + ++++|++++|+||||.+++.   ++|.++|+++|+++|+||+|.....    
T Consensus       138 ~~v~~v~~~~~~~~~~~l~~~~~~~~~-~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (405)
T PRK09148        138 GVIRSVPAEPDEEFFPALERAVRHSIP-KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP  216 (405)
T ss_pred             CEEEEEeCCCCCCCccCHHHHHhhccc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCC
Confidence            888777542    3445555543   3 68999999999999999986   5788889999999999999764321    


Q ss_pred             cc-c--cc--cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHH
Q 009523          332 QK-A--LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQ  402 (532)
Q Consensus       332 ~~-~--l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~  402 (532)
                      .. .  +.  .+..+++.|+||.++.+| .+.||+++++++++.+...........+......+...++    .+....+
T Consensus       217 ~~s~~~~~~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~  295 (405)
T PRK09148        217 PPSVLQVPGAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRE  295 (405)
T ss_pred             CCChhhCCCccCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence            11 1  11  123467899999998666 5689999999999998876654443344444443333332    2233334


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHHc-CCCceeecCCCc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDAL-KIPYIAPSFGGC  479 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--~~~~~~l~~L-~~~~i~vs~G~~  479 (532)
                      ...++...+.+.|+++. + .+..|.                .|.++|++++...  .....|.+.+ +..++.+..|..
T Consensus       296 ~~~~~r~~l~~~L~~~~-~-~~~~p~----------------~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  357 (405)
T PRK09148        296 LYKKRRDVLVESFGRAG-W-DIPPPA----------------ASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVG  357 (405)
T ss_pred             HHHHHHHHHHHHHHHcC-C-ccCCCC----------------eeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchh
Confidence            44566677778887642 2 121121                4667899887421  1234454443 345777777754


Q ss_pred             ccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 009523          480 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL  526 (532)
Q Consensus       480 ~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~  526 (532)
                      +..                     ..++++||+++ ++.+++.+.|+
T Consensus       358 f~~---------------------~~~~~~Ri~~~-~~~~~l~~al~  382 (405)
T PRK09148        358 FGE---------------------HGDGYVRIALV-ENEQRIRQAAR  382 (405)
T ss_pred             hCC---------------------CCCCeEEEEec-CCHHHHHHHHH
Confidence            310                     02478999998 45555444443

>PRK09265 aminotransferase AlaT; Validated

Probab=99.91  E-value=1.1e-21  Score=208.49  Aligned_cols=289  Identities=13%  Similarity=0.095  Sum_probs=182.0

Q ss_pred             CCCchh-HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          197 RYGNPT-TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~------ga-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      +|+.+. ...|++++|+++      +. .+.|++++|+ +++..++.+++++||+|++++|+|......    +...|..
T Consensus        67 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~  142 (404)
T PRK09265         67 GYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAA----VSLSGGK  142 (404)
T ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHH----HHHcCCE
Confidence            344443 468899999987      33 2345555555 889999999999999999999999875433    3345665


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----c
Q 009523          268 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----Q  332 (532)
Q Consensus       268 v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~  332 (532)
                      +..++.       .|++++++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|.....     .
T Consensus       143 ~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  221 (404)
T PRK09265        143 PVHYLCDEEAGWFPDLDDIRSKITP-RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHI  221 (404)
T ss_pred             EEEEecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcC
Confidence            554421       268899998876 6999999999999999999   88899999999999999999754321     0


Q ss_pred             ccccc---CCcEEEECCccccCCCCCcEEEEEEe--ChH----HHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHH-
Q 009523          333 KALSL---GADLVLHSATKFIGGHNDVLAGSISG--SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHL-  399 (532)
Q Consensus       333 ~~l~~---gaDivv~S~sK~lgg~gd~~gG~lv~--~~~----li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~-  399 (532)
                      .....   ...+++.|+||.++.+| ++.|+++.  +++    +++.+.... ......+.....++...+.   .... 
T Consensus       222 ~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~  299 (404)
T PRK09265        222 SIASLAPDLLCVTFNGLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSINEL  299 (404)
T ss_pred             CHHHcCCCceEEEEecchhhccCcc-cceEEEEEeCchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhHHHH
Confidence            11111   12467899999998766 45778874  443    333333221 1222333333333333332   1111 


Q ss_pred             --HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH----HHHHHHHHHcCCCcee
Q 009523          400 --RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL----TATIKFIDALKIPYIA  473 (532)
Q Consensus       400 --r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~----~~~~~~l~~L~~~~i~  473 (532)
                        ..++..++++.+.+.|++++++. +..|.                .|.++|+.++...    ...+.+.+.+...++.
T Consensus       300 ~~~~~~~~~~r~~~~~~L~~~~~~~-~~~p~----------------~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~  362 (404)
T PRK09265        300 ILPGGRLYEQRDRAWELLNAIPGVS-CVKPK----------------GALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVL  362 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCc-ccCCC----------------cceEEEEEecccccCCCCHHHHHHHHHHhCCEE
Confidence              11234456667777887765532 22221                4668888886421    1233444555556777


Q ss_pred             ecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       474 vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                      +..|..+..                     ..++++||+++.  |..++.++.|.++|+
T Consensus       363 v~pg~~F~~---------------------~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~  400 (404)
T PRK09265        363 LVQGTGFNW---------------------PEPDHFRIVTLPRVDDLEEAIGRIGRFLS  400 (404)
T ss_pred             EECchhhCC---------------------CCCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            777644310                     125789999974  234555666666654

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.91  E-value=1.6e-21  Score=213.86  Aligned_cols=287  Identities=13%  Similarity=0.113  Sum_probs=179.8

Q ss_pred             CCCchh-HHHHHHHHHhhh------CC-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          197 RYGNPT-TVVVEEKMSALE------GA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~------ga-~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      +|+.+. ...|+++||+++      +. .+.|++++| ++++.+++.+++++||+|+++.|.|.....    .+...|.+
T Consensus       180 ~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~----~~~~~g~~  255 (517)
T PRK13355        180 GYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTA----CVNLAGGT  255 (517)
T ss_pred             CCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHH----HHHHCCCE
Confidence            355543 788999999987      33 234555555 599999999999999999999999987543    34556777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----
Q 009523          268 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  332 (532)
Q Consensus       268 v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----  332 (532)
                      +..++.       .|+++|++++++ ++++|++++|+||||.+++   +++|+++|++||++||+||+|......     
T Consensus       256 ~v~~~~~~~~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~  334 (517)
T PRK13355        256 AVHYRCDEQSEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT  334 (517)
T ss_pred             EEEeecCcccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc
Confidence            766642       378999999987 7999999999999999998   778899999999999999997643211     


Q ss_pred             cccccCC---cEEEECCccccCCCCCcEEEEEE--eChHH----HHHHHHHhhhcCCCccHHHHHHHHHhHHH------H
Q 009523          333 KALSLGA---DLVLHSATKFIGGHNDVLAGSIS--GSGKL----VTQIRNLHHVLGGALNPNAAYLIIRGMKT------L  397 (532)
Q Consensus       333 ~~l~~ga---Divv~S~sK~lgg~gd~~gG~lv--~~~~l----i~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l  397 (532)
                      .......   .+++.|+||.++.+| .+.||++  +++++    ++.+..... ...+.+....+++...++.      .
T Consensus       335 s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~  412 (517)
T PRK13355        335 SIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNMLAN-MRLCSNVPAQSIVQTALGGHQSVKDY  412 (517)
T ss_pred             cHHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHHHhc-CcCCcChHHHHHHHHHhcCCccHHHH
Confidence            1112212   245699999998766 4578887  44444    333332222 2223344444444433321      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHcCCCcee
Q 009523          398 HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDALKIPYIA  473 (532)
Q Consensus       398 ~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~~L~~~~i~  473 (532)
                      ....++..+++..+.+.|++.|++. +..|.                .+.++++.++..    ......+.+.|...++.
T Consensus       413 ~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~----------------g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~  475 (517)
T PRK13355        413 LVPGGRVYEQRELVYNALNAIPGIS-AVKPK----------------AAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVL  475 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcc-cCCCC----------------eeeEEEeecCcccCCCCCHHHHHHHHHHhCCEE
Confidence            1122334455677778887765542 22221                234566677531    01222233445556777


Q ss_pred             ecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH---HHHHHHHH
Q 009523          474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL---KADVLQAL  529 (532)
Q Consensus       474 vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl---i~dL~~AL  529 (532)
                      +..|..+..                     -.++++|||+.. +.+++   ++.|.+.+
T Consensus       476 v~pg~~F~~---------------------~~~~~~Ris~~~-~~~~l~~a~~rl~~~~  512 (517)
T PRK13355        476 IVQGTGFNW---------------------DKPDHFRVVYLP-RLEDLEDAMDRLADFF  512 (517)
T ss_pred             EeCcchhCC---------------------CCcCEEEEEeCC-CHHHHHHHHHHHHHHH
Confidence            777754310                     125799999964 44443   44444444

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.91  E-value=3.6e-22  Score=209.45  Aligned_cols=295  Identities=16%  Similarity=0.146  Sum_probs=195.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCC---------------EEEEcCCCCcchHHHHHHhccc
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG---------------HIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd---------------~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      ..+..+++++.+++++|+++++++++|++|+.+++.+++++||               +||++.+.|......+...+..
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~  122 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL  122 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHh
Confidence            4577889999999999999999999999999999999999998               8888885554321112234455


Q ss_pred             CCcEEEEeCC---CCHHHHHHhhcCCCeeEEE-EeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCC
Q 009523          264 MGITATVIDP---ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA  339 (532)
Q Consensus       264 ~Gv~v~~vd~---~dle~Le~al~~~~tklV~-lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~ga  339 (532)
                      .|+++++++.   .|++++++++++ +|++++ +++|+||+|.+.|+++|+++|+++|+++|+|++++..+ .....+|+
T Consensus       123 ~g~~~v~v~~~~~~d~~~le~ai~~-~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~  200 (363)
T TIGR01437       123 GGGKVVEAGYANECSAEQLEAAITE-KTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGA  200 (363)
T ss_pred             cCCeEEEEcCCCCCCHHHHHHhcCh-hceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCC
Confidence            6878877763   489999999988 688665 68889999999999999999999999999999987332 23345689


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAK  413 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~a~l~l~~l~tl----~~r~~~~~~~a~~la~  413 (532)
                      |++++|+||+++|+.   +|++++++++++.++......+..  ........+..+++.+    ..+.++..+++..+.+
T Consensus       201 D~~~~S~~K~l~gp~---~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~  277 (363)
T TIGR01437       201 DLVIYSGAKAIEGPT---SGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIE  277 (363)
T ss_pred             CEEEEeCCcccCCCc---eEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence            999999999998763   789999888887765432211111  1111111112233222    1233445566777888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      .|.+.|++.....+..... .+         .-..+.|...+.......+.+.|+..++.+..-        +       
T Consensus       278 ~L~~i~g~~~~~~~~~~~~-~~---------~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r--------~-------  332 (363)
T TIGR01437       278 ALNTLKGVSASIVQDEAGR-DI---------ARAEIRFDESELGMTAADVVQALRQGEPAIYTR--------G-------  332 (363)
T ss_pred             HHhcCCCeEEEEecCCCCC-cC---------ceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEe--------e-------
Confidence            9988887754422211000 00         112356655311123456666665433222110        0       


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                              .....+.+||++..-+ ++.++.|.++|.++
T Consensus       333 --------~~~~~~~~~l~~~~~~-~~e~~~~~~~l~~~  362 (363)
T TIGR01437       333 --------YKANEGIIEIDPRSVT-GGQLDIIVERIREI  362 (363)
T ss_pred             --------eeecCCeEEEEeecCC-HHHHHHHHHHHHHh
Confidence                    1124678999988755 56678888887653

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK09082 methionine aminotransferase; Validated

Probab=99.91  E-value=7.1e-22  Score=208.82  Aligned_cols=275  Identities=16%  Similarity=0.115  Sum_probs=181.5

Q ss_pred             HHHHHHHHHhhhCC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          203 TVVVEEKMSALEGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       203 ~~~Le~~lA~l~ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      .+.+.+.+.+++|.    + +.+++++|++|+..++.+++.+||+|++++|.|......    ++..|.++..++.+   
T Consensus        73 r~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~----~~~~g~~~~~~~~~~~~  148 (386)
T PRK09082         73 REAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPA----IELAGGRAVRVALQPPD  148 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHH----HHHcCCEEEEEecCccc
Confidence            44455555555664    2 355555667999999999999999999999999875543    34457777777643   


Q ss_pred             ---CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----ccccc----cCC
Q 009523          275 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----LGA  339 (532)
Q Consensus       275 ---dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~----~ga  339 (532)
                         |++++++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....     .....    ...
T Consensus       149 ~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~  227 (386)
T PRK09082        149 FRVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRER  227 (386)
T ss_pred             ccCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCc
Confidence               78899999987 6999999999999999864   67889999999999999999754221     11111    235


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~~la~~L  415 (532)
                      .+++.|+||.+|.+| .+.|++++++++++.++..........+...+..+...++    .+....+...++...+.+.|
T Consensus       228 ~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  306 (386)
T PRK09082        228 AFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAAL  306 (386)
T ss_pred             EEEEeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999998665 4679999999999988876544443445544443333333    22222334456677777888


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHc-CCCceeecCCCcccccccCccccccC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      ++. ++. +..|                ..|.++|+.++. .......|.+.| +..++.+..|+.+...          
T Consensus       307 ~~~-~~~-~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~----------  358 (386)
T PRK09082        307 ANS-RFK-LLPC----------------EGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYAD----------  358 (386)
T ss_pred             HhC-CCc-ccCC----------------CeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCC----------
Confidence            763 221 1111                134568888862 112234455543 4557777777543210          


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDL  521 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dl  521 (532)
                               +...+++||+++. +.+++
T Consensus       359 ---------~~~~~~~Ri~~~~-~~~~l  376 (386)
T PRK09082        359 ---------PFPHRLVRLCFAK-QEETL  376 (386)
T ss_pred             ---------CCCCCEEEEEecC-CHHHH
Confidence                     1135799999997 44433

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.91  E-value=7.2e-22  Score=206.45  Aligned_cols=281  Identities=16%  Similarity=0.198  Sum_probs=190.0

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..+|+++...+||+++|++++.+ +.|++++|+ +++..++.++ .+ +.|+++.|+|+...    ..++..|.++..++
T Consensus        48 ~~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~----~~~~~~g~~~~~~~  121 (354)
T PRK06358         48 LVEYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYE----RALKAFDAEIEYAE  121 (354)
T ss_pred             hhcCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHH----HHHHHcCCeeEEEe
Confidence            34567777789999999999863 445555555 9999888876 44 68999999998644    34455677777664


Q ss_pred             CC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----ccc---
Q 009523          273 PA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---  335 (532)
Q Consensus       273 ~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~l---  335 (532)
                      .+       | +++.+.+.+ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|......    .++   
T Consensus       122 ~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  199 (354)
T PRK06358        122 LTEETNFAAN-EIVLEEIKE-EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL  199 (354)
T ss_pred             CccccCCCcc-HHHHHhhcc-CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc
Confidence            32       3 345555555 6899999999999999997   667888889999999999997643321    111   


Q ss_pred             -ccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHH
Q 009523          336 -SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALR  410 (532)
Q Consensus       336 -~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~  410 (532)
                       .....+++.|+||.+|.+| .+.||++++ +.+++.+......  ...+....+++...++   .+...++...++++.
T Consensus       200 ~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~  276 (354)
T PRK06358        200 ENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQMREP--WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDF  276 (354)
T ss_pred             cCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhCCC--CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence             1134589999999998555 468888874 6777888766542  2345545454444442   233444555667778


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|++++++ .+..|                 .|++++++++..    ..|.+.|...++.+..|..+.         
T Consensus       277 l~~~L~~~~~~-~~~~~-----------------~g~f~~~~~~~~----~~~~~~l~~~gI~v~~~~~f~---------  325 (354)
T PRK06358        277 LYNGLSEFKGI-KVYKP-----------------SVNFIFFKLEKP----IDLRKELLKKGILIRSCSNYR---------  325 (354)
T ss_pred             HHHHHhcCCCc-EEcCC-----------------cceEEEEEcCch----HHHHHHHHHCCeEEEECCCCC---------
Confidence            88888876553 23222                 256889998742    345555555577777664431         


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQAL  529 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL  529 (532)
                                  +..+++|||++|. ++.+.+++.|.+.+
T Consensus       326 ------------~~~~~~iRls~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        326 ------------GLDENYYRVAVKSREDNKKLLKALEVIL  353 (354)
T ss_pred             ------------CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence                        1135789999997 56677777776654

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.2e-21  Score=207.58  Aligned_cols=286  Identities=13%  Similarity=0.138  Sum_probs=186.0

Q ss_pred             hhHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          201 PTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~g-------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .....++++++++++       .++++++++|++|+..++..++++||+|++++|.|.....    .++..|+++..++.
T Consensus        66 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~v~~  141 (397)
T PRK07568         66 QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNG----FATSAGVKIVPVTT  141 (397)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHH----HHHHcCCEEEEeec
Confidence            346788999998863       2456666777799999999999999999999999986442    34556887777653


Q ss_pred             C--------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----ccccc-
Q 009523          274 A--------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-  336 (532)
Q Consensus       274 ~--------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~-  336 (532)
                      +        ++++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....     ..... 
T Consensus       142 ~~~~g~~~~~~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~  220 (397)
T PRK07568        142 KIEEGFHLPSKEEIEKLITP-KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSL  220 (397)
T ss_pred             CcccCCCCCCHHHHHHhcCc-cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhc
Confidence            1        46889998877 6999999999999999986   67899999999999999999764321     11111 


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  408 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a  408 (532)
                         ....+++.|+||.++.+| .+.|+++++ +++++.+...... ....+...+..+...++    .+....+...+++
T Consensus       221 ~~~~~~~i~~~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  298 (397)
T PRK07568        221 EGLEDRVIIIDSVSKRYSACG-ARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRR  298 (397)
T ss_pred             CCCcCCEEEEecchhhccCCC-cceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence               123489999999998766 457888874 6787776544322 22334444433333333    2233334455667


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC------CCceeecCCCcccc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK------IPYIAPSFGGCESI  482 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~------~~~i~vs~G~~~sl  482 (532)
                      ..+.+.|++++++ .+..|.                .|.++|++++..  ....|.+.+.      ..++.+..|..+..
T Consensus       299 ~~l~~~L~~~~~~-~~~~p~----------------g~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~  359 (397)
T PRK07568        299 DILYEELNKIPGV-VCEKPK----------------GAFYIIAKLPVD--DAEDFAKWLLTDFNYNGETVMVAPASGFYA  359 (397)
T ss_pred             HHHHHHHhcCCCc-eecCCC----------------cceEEEEecCCC--CHHHHHHHHHhhcccccceEEEeCchHhcC
Confidence            7788888776554 232231                344678888742  2233443331      13566666643310


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                        .+                +...++||||++..  +.++.++.|.++|+
T Consensus       360 --~~----------------~~~~~~iRls~~~~~~~~~~~~~~l~~~l~  391 (397)
T PRK07568        360 --TP----------------GLGKNEIRIAYVLNEEDLKRAMEILKEALE  391 (397)
T ss_pred             --CC----------------CCCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence              00                12347999999853  33445555566554

>PRK03321 putative aminotransferase; Provisional

Probab=99.90  E-value=2.4e-22  Score=209.52  Aligned_cols=279  Identities=17%  Similarity=0.212  Sum_probs=195.7

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+.+....+++.+|++++.+ +.|++++|+ +++..++..++++||+|+++.|+|....    ..++..|.++..++.
T Consensus        52 ~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~v~~  127 (352)
T PRK03321         52 NRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYP----ILVQVAGATPVQVPL  127 (352)
T ss_pred             CcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHH----HHHHHcCCEEEEccC
Confidence            4456678899999999999874 456667776 7788888888999999999999986533    234556888877764


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc----ccc----ccC
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SLG  338 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~----~~l----~~g  338 (532)
                      +     |++++++++++ ++++|++++|+||||.++|.++|.++|+.  +++++|+|++|......    .+.    ...
T Consensus       128 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  206 (352)
T PRK03321        128 TPDHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHP  206 (352)
T ss_pred             CCCCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCC
Confidence            3     68999999977 79999999999999999999999999987  59999999997643211    111    112


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~L  415 (532)
                      ..+++.|+||.+|.+| ++.|++++++++++.++....  ....+.....++...+   +.+..++++..++...+.+.|
T Consensus       207 ~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L  283 (352)
T PRK03321        207 NVVVLRTFSKAYGLAG-LRVGYAVGHPEVIAALRKVAV--PFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL  283 (352)
T ss_pred             CEEEEecchHHhhhHH-HhhhhhcCCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588899999998554 568999999999998876542  2334555444333333   344445555555666677777


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++. ++. + .|                ..|.++++.++.+   ...|.+.|...++.+..  +                
T Consensus       284 ~~~-~~~-~-~~----------------~~g~~i~i~l~~~---~~~~~~~l~~~gI~v~~--~----------------  323 (352)
T PRK03321        284 RAA-GWT-V-PP----------------SQANFVWLPLGER---TADFAAAAAEAGVVVRP--F----------------  323 (352)
T ss_pred             HHC-CCc-c-CC----------------CCCCEEEEeCCCC---HHHHHHHHHHCCEEEEc--c----------------
Confidence            764 221 1 11                1367888888532   34566666555655432  0                


Q ss_pred             HHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHhh
Q 009523          496 QSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQALHA  531 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~~  531 (532)
                               .++.|||+++. ++.+.+++.|+++++.
T Consensus       324 ---------~~~~iRi~~~~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        324 ---------AGEGVRVTIGAPEENDAFLRAARAWRAG  351 (352)
T ss_pred             ---------CCCcEEEeeCCHHHHHHHHHHHHHHhcc
Confidence                     12459999986 5567788888887653

>PRK09105 putative aminotransferase; Provisional

Probab=99.90  E-value=5.3e-22  Score=208.76  Aligned_cols=278  Identities=17%  Similarity=0.212  Sum_probs=184.1

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ++|+.+...+|++.+++.+|.  +++++++++++++..++.+++++||+|++++|+|....    ..++..|+++..++.
T Consensus        73 ~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~----~~~~~~g~~~~~v~~  148 (370)
T PRK09105         73 GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGW----RAADAQGAPVAKVPL  148 (370)
T ss_pred             cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEecC
Confidence            456666788999999999986  34455555569999999999999999999999998754    345567888877753


Q ss_pred             -----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc----cccccC-CcE
Q 009523          274 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KALSLG-ADL  341 (532)
Q Consensus       274 -----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~----~~l~~g-aDi  341 (532)
                           .|++++++. .+ ++++|++++|+||||.+.+.+++.++++.  +++++|+||+|......    +..+.. ..+
T Consensus       149 ~~~~~~d~~~l~~~-~~-~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi  226 (370)
T PRK09105        149 RADGAHDVKAMLAA-DP-NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLI  226 (370)
T ss_pred             CCCCCCCHHHHHhc-CC-CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEE
Confidence                 367888776 34 58999999999999999999888888754  48999999997532111    111112 247


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ++.|+||.+|.+| .+.||+++++++++.+... .  ....+......+...+   +.+....+...++.+.+.+.|+++
T Consensus       227 ~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~-~--~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (370)
T PRK09105        227 VLRTFSKLYGMAG-MRLGLAAARPDLLAKLARF-G--HNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK  302 (370)
T ss_pred             EEecccHhhcCCc-cceeeeecCHHHHHHHHhc-C--CCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8899999998776 4678999999999888765 1  2223333333333333   223333445556777778888775


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE  498 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~  498 (532)
                       ++. +..|                 .|+++.+.++.+   ...|.+.|...++.+  |..+     +            
T Consensus       303 -g~~-~~~~-----------------~~~f~~~~~~~~---~~~l~~~L~~~gI~v--~~~~-----~------------  341 (370)
T PRK09105        303 -GYK-CTPS-----------------QANCFMVDVKRP---AKAVADAMAKQGVFI--GRSW-----P------------  341 (370)
T ss_pred             -CCC-cCCC-----------------CCcEEEEeCCCC---HHHHHHHHHHCCcEE--ecCC-----C------------
Confidence             321 2111                 255666766532   234555554445554  3111     0            


Q ss_pred             HHhcCCCCCeEEEEecCCC-HHHHHHHHHHHH
Q 009523          499 RLKYGIMDNLVRFSFGVED-FEDLKADVLQAL  529 (532)
Q Consensus       499 ~~~~gi~~~~IRlSvG~ed-~~dli~dL~~AL  529 (532)
                           ..++++||+++.++ .+.+++.|++.+
T Consensus       342 -----~~~~~~Ris~~~~~~~~~l~~al~~~~  368 (370)
T PRK09105        342 -----IWPNWVRVTVGSEEEMAAFRSAFAKVM  368 (370)
T ss_pred             -----CCCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence                 02579999999632 455555555443

>PRK08363 alanine aminotransferase; Validated

Probab=99.90  E-value=1.6e-21  Score=206.81  Aligned_cols=286  Identities=14%  Similarity=0.114  Sum_probs=182.6

Q ss_pred             chhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          200 NPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga--------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .+....|+++++++++.        ++.++++++++|+..++.+++++||+|++++|+|......    ++..|..+..+
T Consensus        69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~v~~  144 (398)
T PRK08363         69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGL----VKFYGGVPVEY  144 (398)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHHcCCEEEEe
Confidence            45677899999998631        3456666667999999999999999999999999986543    34456555544


Q ss_pred             -CC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----cc--c
Q 009523          272 -DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA--L  335 (532)
Q Consensus       272 -d~------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~--l  335 (532)
                       +.      .|++++++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    ..  +
T Consensus       145 ~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~  223 (398)
T PRK08363        145 RTIEEEGWQPDIDDIRKKITE-KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSL  223 (398)
T ss_pred             ccccccCCcCCHHHHHhhCCc-ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHc
Confidence             21      368889998877 6999999999999999998   788999999999999999997643211    11  1


Q ss_pred             c-cCCcEEEECCccccCCCCCcEEEEEEe--ChHHHHHHHHHhhhc---CCCccHHHHHHHHHhH----HHHHHHHHHHH
Q 009523          336 S-LGADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNLHHVL---GGALNPNAAYLIIRGM----KTLHLRVQQQN  405 (532)
Q Consensus       336 ~-~gaDivv~S~sK~lgg~gd~~gG~lv~--~~~li~~l~~~~~~~---G~~~~~~~a~l~l~~l----~tl~~r~~~~~  405 (532)
                      . ....+++.|+||.++.+| ++.||++.  ++++++.++......   ....+.....++...+    +.+....++..
T Consensus       224 ~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~  302 (398)
T PRK08363        224 TKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLK  302 (398)
T ss_pred             CcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            1 123478899999987666 46788886  667776665433211   1223444333333333    23333345555


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHH-HHcCCCceeecCCCccccc
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFI-DALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l-~~L~~~~i~vs~G~~~sl~  483 (532)
                      ++...+.+.|++++.+. +..|.                .|.++|+.+++. ......++ ..++..++.+..|..+.. 
T Consensus       303 ~~~~~l~~~L~~~~~~~-~~~p~----------------g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~-  364 (398)
T PRK08363        303 ERRDYIYKRLNEIPGIS-TTKPQ----------------GAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGE-  364 (398)
T ss_pred             HHHHHHHHHHhcCCCCE-ecCCC----------------eEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC-
Confidence            66777788887765542 32221                244556677641 00122332 334555777766654310 


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL  529 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL  529 (532)
                                          ..+++||||++..  +.++.++.|.+.+
T Consensus       365 --------------------~~~~~iRis~~~~~~~l~~~l~~l~~~~  392 (398)
T PRK08363        365 --------------------YGAGHFRLVFLPPVEILEEAMDRFEEFM  392 (398)
T ss_pred             --------------------CCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence                                1257999999853  2233344444444

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.90  E-value=2.7e-22  Score=209.25  Aligned_cols=282  Identities=16%  Similarity=0.169  Sum_probs=191.1

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhcc----CC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~----~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+++++++++++|.+  +++++++++++++.++.++..    +| ++|++....|++....+. .++..|++++.++.
T Consensus        42 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-~~~~~G~~v~~v~~  120 (353)
T TIGR03235        42 KAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIR-ALERNGFTVTYLPV  120 (353)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHH-HHHhcCCEEEEEcc
Confidence            45778999999999974  455555556899998887753    56 789999988988766553 34567999888864


Q ss_pred             -----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCc
Q 009523          274 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  347 (532)
Q Consensus       274 -----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~s  347 (532)
                           .|+++|++++++ ++++|++++++||||.+.|+++|.++|+++|+++++|++++.+. ..+....++|+++.|++
T Consensus       121 ~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~  199 (353)
T TIGR03235       121 DESGRIDVDELADAIRP-DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGH  199 (353)
T ss_pred             CCCCcCCHHHHHHhCCC-CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehh
Confidence                 378999999987 69999999999999999999999999999999999999976543 34445678999999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHH--HHHH-------hhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQ--IRNL-------HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~--l~~~-------~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la~~  414 (532)
                      |++|++|   .|+++.+++.+..  ++..       .....++.+....+.+..+++.    +..+.+++.+.+..+.+.
T Consensus       200 K~~gp~g---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~  276 (353)
T TIGR03235       200 KIYGPKG---IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDA  276 (353)
T ss_pred             hcCCCCc---eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9987665   6777777654322  1110       0011223333333333333332    234445555666777777


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      |++ ++++-+..|.              ....++++|.+++  ...+.+...|+. +++++.|..++.    .    ..-
T Consensus       277 l~~-~g~~~~~~~~--------------~~~~~i~~~~~~~--~~~~~v~~~L~~-~i~v~~g~~~~~----~----~~~  330 (353)
T TIGR03235       277 LQT-LGVKLNGDPA--------------ETIPHILNFSIDG--VNSEALIVNLRA-DAAVSTGSACSS----S----KYE  330 (353)
T ss_pred             hcc-CCeEEeCCcc--------------cccCCEEEEEeCC--cCHHHHHHHHhC-CeEEEchhhcCC----C----CCC
Confidence            765 5553221111              1135688888875  223455556654 788888865431    1    111


Q ss_pred             CHHHHHhcCCCC----CeEEEEe
Q 009523          495 SQSERLKYGIMD----NLVRFSF  513 (532)
Q Consensus       495 ~~~~~~~~gi~~----~~IRlSv  513 (532)
                      +...+.++|+++    +.||+|+
T Consensus       331 ~~~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       331 PSHVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             CCHHHHHcCCCHHHhCccEEEeC
Confidence            346678888864    7899985

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=4e-22  Score=209.60  Aligned_cols=281  Identities=18%  Similarity=0.235  Sum_probs=190.7

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+++....|++++|+++|.+ +.|++++|+ +++..++.+++++||+|+++.|+|+...    ..++..|+++..++.
T Consensus        66 ~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~~  141 (371)
T PRK05166         66 RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVTV  141 (371)
T ss_pred             hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEeec
Confidence            4566666678999999999863 445555555 9999999999999999999999998643    345567888887754


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc----cc---cc-c-
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KA---LS-L-  337 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~----~~---l~-~-  337 (532)
                      +     |++++++++++ ++++|++++|+||||.+++.+++.++++.  .++++|+|++|......    ..   .. . 
T Consensus       142 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  220 (371)
T PRK05166        142 TPDLGFDLDALCAAVAR-APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARG  220 (371)
T ss_pred             CCCCCCCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcC
Confidence            3     68999999877 68999999999999999998777777653  47899999997543211    11   11 1 


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~  413 (532)
                      ...+++.|+||.+|.+| ++.||++. ++++++.++.....++  .+.....++...+   +.+....+...++.+.+.+
T Consensus       221 ~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~  297 (371)
T PRK05166        221 LPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVALALAERERLKK  297 (371)
T ss_pred             CCEEEEeechHhhhcch-hheeeeecCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            23588999999998555 46788665 6788887776543333  3444433333333   2334444455566777888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      .|+++ ++. + +|.                .|.++|+.++.+   ...|.+.+...++.+..|..      +       
T Consensus       298 ~L~~~-g~~-~-~p~----------------~g~fl~~~~~~~---~~~l~~~l~~~gi~v~p~~~------~-------  342 (371)
T PRK05166        298 ELAEM-GYR-I-APS----------------RANFLFFDARRP---ASAVAEALLRQGVIVKPWKQ------P-------  342 (371)
T ss_pred             HHHHC-cCe-e-CCC----------------cCCEEEEeCCCC---HHHHHHHHHHCCeEEecCCC------C-------
Confidence            88876 332 2 221                366888887532   34455555545776665521      0       


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHH
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQAL  529 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed-~~dli~dL~~AL  529 (532)
                               + .+++|||+++..+ .+++++.|+..+
T Consensus       343 ---------~-~~~~iRi~~~~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        343 ---------G-FETFIRVSIGSPEENDHFVAALDKVL  369 (371)
T ss_pred             ---------C-CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence                     1 2579999999754 566666665544

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.90  E-value=7.5e-22  Score=205.07  Aligned_cols=304  Identities=17%  Similarity=0.153  Sum_probs=208.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      +..|...++|+++++++|.+++++++||++|+..++.++ +++||+|+++.++|.++...    +...|+++.+++.+  
T Consensus        15 ~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~   90 (352)
T cd00616          15 TLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANA----ILLLGATPVFVDIDPD   90 (352)
T ss_pred             cCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCeEEEEecCCC
Confidence            346889999999999999989999999999999999988 68999999999999886543    34568888877532  


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc--ccccCCcEEEECCc-
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSAT-  347 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~--~l~~gaDivv~S~s-  347 (532)
                          |++++++++++ ++++|+++   |++|.+.|+++|.++|+++|+++|+|++++.+....  ......|+.+.|++ 
T Consensus        91 ~~~~d~~~l~~~i~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~  166 (352)
T cd00616          91 TYNIDPELIEAAITP-RTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHP  166 (352)
T ss_pred             cCCcCHHHHHHhcCc-CCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCC
Confidence                68999999976 79999985   568999999999999999999999999987553322  12223688999976 


Q ss_pred             -cccCCCCCcEEEEEEeC-hHHHHHHHHHhhh---------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009523          348 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR  410 (532)
Q Consensus       348 -K~lgg~gd~~gG~lv~~-~~li~~l~~~~~~---------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~  410 (532)
                       |+++++   .||+++.+ +++.++++.....               ++..+++..+++.+..++.+....++..+++++
T Consensus       167 ~K~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~  243 (352)
T cd00616         167 TKNLTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAER  243 (352)
T ss_pred             CCCCccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             999644   36777765 5777766543221               112345666777777777777777888899999


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|.+.+++..+ .+.-..           .....++.|.+++. ......+.+.|...++.++.  .+....+....
T Consensus       244 ~~~~L~~~~g~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~--~~~~~~~~~~~  309 (352)
T cd00616         244 YKELLADLPGIRLP-DVPPGV-----------KHSYHLYVIRLDPEAGESRDELIEALKEAGIETRV--HYPPLHHQPPY  309 (352)
T ss_pred             HHHHhcCCCCccCC-CCCCCC-----------ceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeee--ecCccccCHhh
Confidence            99999987776422 221000           01245888888630 12344555555444443321  11111000000


Q ss_pred             c------ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          490 S------YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       490 s------~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      .      ....+.    +..+..+.|||+++...+++.++.+.++|+
T Consensus       310 ~~~~~~~~~~~~~----a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         310 KKLLGYPPGDLPN----AEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             hhccCCCcCCChH----HHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            0      000111    111235799999999888888888888774

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.90  E-value=1e-21  Score=203.37  Aligned_cols=269  Identities=19%  Similarity=0.231  Sum_probs=178.4

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCH
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  276 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dl  276 (532)
                      +|+.+. ..|+++|++.+|.++.++++++.+++.+++  .+.+||+|++++|+|+...    ..++..|+++..++.   
T Consensus        46 ~yp~~~-~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~---  115 (330)
T PRK05664         46 RLPETD-DGLEAAARAYYGAPQLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDE---  115 (330)
T ss_pred             hCCCCh-HHHHHHHHHHhCCCCEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHH----HHHHHcCCeEEEech---
Confidence            355555 789999999999876665555559988775  3579999999999998754    455677999888875   


Q ss_pred             HHHHHhhcCCCeeEEEEeCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCcc---cccc-cCCcEEEECCccc
Q 009523          277 EGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQ---KALS-LGADLVLHSATKF  349 (532)
Q Consensus       277 e~Le~al~~~~tklV~lesP~NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~~---~~l~-~gaDivv~S~sK~  349 (532)
                      ++++++++  +++++++++|+||||.+++.+   +|+++|+++|+++|+||+|......   ..+. ....+++.|+||.
T Consensus       116 ~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~  193 (330)
T PRK05664        116 AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKF  193 (330)
T ss_pred             hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecccc
Confidence            45666664  478899999999999999855   5555678899999999998644221   1111 1234899999999


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhCCCceEEeC
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPKVKRVHY  426 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~~p~v~~V~~  426 (532)
                      +|.+| ++.||+++++++++.+......+  ..+....+++...+..   .....++..++++.+.+.|+++. +.    
T Consensus       194 ~gl~G-lRiG~~v~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~----  265 (330)
T PRK05664        194 FGLAG-ARLGFVLAEPALLRALAELLGPW--TVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHG-LT----  265 (330)
T ss_pred             ccCCC-cceEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC-Cc----
Confidence            98665 46899999999999887765432  2344444444444432   22233444566777888887752 10    


Q ss_pred             CCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCC
Q 009523          427 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD  506 (532)
Q Consensus       427 Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~  506 (532)
                      |.              .+.+.++++.++ +   ...+.+.|...++.+..   +                      + ..
T Consensus       266 ~~--------------~~~~~f~~~~~~-~---~~~~~~~l~~~gi~v~~---f----------------------~-~~  301 (330)
T PRK05664        266 PA--------------GGCALFQWVRTE-D---AAALHEFLARRGILTRL---F----------------------E-QP  301 (330)
T ss_pred             cc--------------CCcceEEEEecC-C---HHHHHHHHHHCCeEEEE---C----------------------C-CC
Confidence            10              122356777764 2   24455555555665531   0                      0 13


Q ss_pred             CeEEEEecC--CCHHHHHHHHHHHH
Q 009523          507 NLVRFSFGV--EDFEDLKADVLQAL  529 (532)
Q Consensus       507 ~~IRlSvG~--ed~~dli~dL~~AL  529 (532)
                      ++||||+|.  ++.+++++.|++..
T Consensus       302 ~~iRis~~~~~~~~~~l~~al~~~~  326 (330)
T PRK05664        302 ASLRFGLPADEADWARLDQALLAYR  326 (330)
T ss_pred             CeEEEECCCCHHHHHHHHHHHHHHH
Confidence            689999994  34555555555443

>PRK08175 aminotransferase; Validated

Probab=99.90  E-value=1.2e-21  Score=207.79  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=182.3

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+|++++++++    |.    ++.+++++|+ +++..++..+++|||+|++++|+|......    +...|+++..++.
T Consensus        69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  144 (395)
T PRK08175         69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYG----AVIAGAQVRSVPL  144 (395)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHHcCCeEEEEec
Confidence            567888888765    32    2245555555 999999999999999999999999875432    3346777777754


Q ss_pred             C----CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCc----ccc---cc-
Q 009523          274 A----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN----QKA---LS-  336 (532)
Q Consensus       274 ~----dle~Le~al~~--~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~----~~~---l~-  336 (532)
                      +    +.++++++++.  .++++|++++|+||||.+.+.   ++|+++|+++|+++|+|++|.....    ..+   +. 
T Consensus       145 ~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~  224 (395)
T PRK08175        145 VEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG  224 (395)
T ss_pred             ccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence            3    47888887763  268999999999999999997   6888899999999999999754221    011   11 


Q ss_pred             -cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 009523          337 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  411 (532)
Q Consensus       337 -~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~l  411 (532)
                       .+..+++.|+||.+|.+| .+.||+++++++++.+.+.........+......+...+..    +....+...++...+
T Consensus       225 ~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  303 (395)
T PRK08175        225 AKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVL  303 (395)
T ss_pred             cccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence             133477899999998665 45789999999999888766543333333333322333321    222233444666777


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHHc-CCCceeecCCCcccccccCcc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDAL-KIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      .+.|+++ ++ .+..|.                .|.++|++++...  .....|...+ +..++.+..|..+.    +  
T Consensus       304 ~~~L~~~-~~-~~~~p~----------------~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~----~--  359 (395)
T PRK08175        304 VKGLHEA-GW-MVEMPK----------------ASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG----D--  359 (395)
T ss_pred             HHHHHHc-CC-cccCCC----------------EEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC----c--
Confidence            7888765 23 222221                4778999997531  1245565543 45677777764431    0  


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                                     ..++++||+++. +.+.+.+.|
T Consensus       360 ---------------~~~~~lRis~~~-~~~~~~~al  380 (395)
T PRK08175        360 ---------------YGDTHVRFALIE-NRDRIRQAI  380 (395)
T ss_pred             ---------------CCCCeEEEEeCC-CHHHHHHHH
Confidence                           124689999984 444443333

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=1.3e-21  Score=211.83  Aligned_cols=289  Identities=14%  Similarity=0.181  Sum_probs=184.7

Q ss_pred             CCCCch-hHHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcc-c
Q 009523          196 GRYGNP-TTVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-K  263 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~g--------a-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~-~  263 (532)
                      .+|+++ ....|+++||++++        . .+.|++++|+ +++..++.++++|||.|++++|.|.+....    +. .
T Consensus        80 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~----~~~~  155 (468)
T PLN02450         80 ALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRD----LKWR  155 (468)
T ss_pred             hcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHH----Hhhc
Confidence            345544 34578888888874        1 2345555655 999999999999999999999999875432    33 4


Q ss_pred             CCcEEEEeCCC-------CHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCC
Q 009523          264 MGITATVIDPA-------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       264 ~Gv~v~~vd~~-------dle~Le~al~~-----~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~  328 (532)
                      .|+++..++.+       |++++++++++     .++++|++++|+||||.+++   +++|.++|+++|+++|+||+|+.
T Consensus       156 ~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~  235 (468)
T PLN02450        156 TGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSG  235 (468)
T ss_pred             CCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccc
Confidence            67787777532       56888887753     26899999999999999998   45678888999999999999874


Q ss_pred             CCcc-----ccc------------ccCCcEEEECCccccCCCCCcEEEEEEeChH-HHHHHHHHhhhcCCCccHHHHHHH
Q 009523          329 PLNQ-----KAL------------SLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       329 ~~~~-----~~l------------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~-li~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                      ....     ..+            .....+++.|+||.++.+| .+.|+++++++ +++.+.... .++. .+.....++
T Consensus       236 ~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~-~~~~-~s~~~Q~a~  312 (468)
T PLN02450        236 TVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMS-SFGL-VSSQTQYLL  312 (468)
T ss_pred             cccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHHHHHh-hcCC-CCHHHHHHH
Confidence            2110     111            1223589999999998555 46889998754 455555443 2332 344444444


Q ss_pred             HHhHHH-------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----HH
Q 009523          391 IRGMKT-------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LT  458 (532)
Q Consensus       391 l~~l~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----~~  458 (532)
                      ...++.       +....++..+..+.+.+.|+++ ++. +..|                ..|.++|+.++..     .+
T Consensus       313 ~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~-~~~~----------------~~g~flwi~l~~~~~~~~~~  374 (468)
T PLN02450        313 SALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIK-CLKS----------------NAGLFCWVDMRHLLKSNTFE  374 (468)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCC----------------CceEEEEEEchHhcCcCCch
Confidence            444322       2333444556667777888775 331 1111                1355889888631     11


Q ss_pred             HHHHHHHHc-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009523          459 ATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH  530 (532)
Q Consensus       459 ~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed---~~dli~dL~~AL~  530 (532)
                      ....+.+.+ +..++.+..|..+..                     ...+++||+++..+   .++.++.|.+++.
T Consensus       375 ~~~~l~~~ll~~~gV~v~PG~~f~~---------------------~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~  429 (468)
T PLN02450        375 AEMELWKKIVYEVKLNISPGSSCHC---------------------TEPGWFRVCFANMSEETLDLAMKRLKSFVE  429 (468)
T ss_pred             HHHHHHHHHHHhCCEEEeCccccCC---------------------CCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            223344443 345788887755320                     12579999999533   3444555555554

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=6.8e-22  Score=207.52  Aligned_cols=217  Identities=18%  Similarity=0.165  Sum_probs=157.9

Q ss_pred             CCCCCchhHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          195 YGRYGNPTTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~----g--a-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      +.+|+++....|++++|+++    |  . .+.|++++|+ +++..++.+++++||.|+++.|+|.....    .+...|+
T Consensus        59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~----~~~~~g~  134 (368)
T PRK03317         59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPI----IARGTHT  134 (368)
T ss_pred             hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH----HHHhcCC
Confidence            45667777788999999988    3  2 2445565555 99999999999999999999999987543    3445677


Q ss_pred             EEEEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---ccc---
Q 009523          267 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KAL---  335 (532)
Q Consensus       267 ~v~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---~~l---  335 (532)
                      ++..++.     .|+++++++++++++++|++++|+||||.+.+.+++.++++.+++++|+||+|......   ...   
T Consensus       135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~  214 (368)
T PRK03317        135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL  214 (368)
T ss_pred             eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence            7666542     37899999987546899999999999999999999999999999999999997643210   111   


Q ss_pred             c-cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHH
Q 009523          336 S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRM  411 (532)
Q Consensus       336 ~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~l  411 (532)
                      . ....+++.|+||.+|.+| ++.|++++++++++.++.....  ...++..+.++...++   .+..++++..++.+.+
T Consensus       215 ~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~--~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l  291 (368)
T PRK03317        215 PEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRLVRLP--YHLSAVTQAAARAALRHADELLASVAALRAERDRV  291 (368)
T ss_pred             HhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHhcCCC--CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            1 123478899999998555 4679999999999988765432  2345555555444443   3333444455666677


Q ss_pred             HHHHHhC
Q 009523          412 AKILEAH  418 (532)
Q Consensus       412 a~~L~~~  418 (532)
                      .+.|+++
T Consensus       292 ~~~L~~~  298 (368)
T PRK03317        292 VAWLREL  298 (368)
T ss_pred             HHHHHHC
Confidence            7777765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=3.1e-21  Score=205.34  Aligned_cols=283  Identities=20%  Similarity=0.189  Sum_probs=196.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      ++...+||++||+++|.+.+++++||++|+..++..+.+  +||.|++....|+.+...+    ...|.++..++..|++
T Consensus        89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~  164 (406)
T PRK13393         89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPA  164 (406)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHH
Confidence            457899999999999999999999999999999987765  7888877777776655433    3346677778878888


Q ss_pred             HHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-------c--ccccCCcEEEEC
Q 009523          278 GLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--ALSLGADLVLHS  345 (532)
Q Consensus       278 ~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-------~--~l~~gaDivv~S  345 (532)
                      ++++.++.   .++++|++|+++|++|.+.|+++|.++|+++|+++|+|++++.++.-       .  ......|+++.|
T Consensus       165 ~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~t  244 (406)
T PRK13393        165 DLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGT  244 (406)
T ss_pred             HHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEe
Confidence            88887752   25899999999999999999999999999999999999997643310       0  111235888899


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l~~l~tl~---~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      ++|.+|..    ||++++++++++.++.....  ++...++..++.+...++.+.   .+.++..++.+++.+.|++. +
T Consensus       245 lsKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  319 (406)
T PRK13393        245 LAKAFGVM----GGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA-G  319 (406)
T ss_pred             Cchhhccc----CceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-C
Confidence            99999964    58899999988888765432  344556665555555555432   23344456777788888763 2


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccccccCccccccCCCHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      +     +.+             ++.|+++.+.+. +......+.+.|.. .++.++.+.      .|..      +    
T Consensus       320 ~-----~~~-------------~~~~~i~~v~~~-~~~~~~~l~~~L~~~~Gi~v~~~~------~p~~------p----  364 (406)
T PRK13393        320 I-----PHL-------------PNPSHIVPVMVG-DPVLCKQISDELLDRYGIYVQPIN------YPTV------P----  364 (406)
T ss_pred             C-----CcC-------------CCCCCeEEEEeC-CHHHHHHHHHHHHHhCCEEEEeEC------CCCC------C----
Confidence            1     111             123667887664 32345666666644 366655431      1210      0    


Q ss_pred             HhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          500 LKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                          ...+.||||+....+++.++.+.++|+
T Consensus       365 ----~g~~~iRis~~~~~t~edid~l~~~l~  391 (406)
T PRK13393        365 ----RGTERLRITPSPLHTDADIEHLVQALS  391 (406)
T ss_pred             ----CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence                013689999987666555555555554

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.90  E-value=3e-21  Score=205.10  Aligned_cols=282  Identities=21%  Similarity=0.215  Sum_probs=192.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      ++...+|+++||+++|.+.+++++||++|+..++..+.+  +|+.|+.....|..+...    +...|+++..++..|++
T Consensus        89 ~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~  164 (402)
T TIGR01821        89 NIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRHNDVA  164 (402)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECCCCHH
Confidence            678899999999999998999999999999999988765  677777665566544332    34457777667777888


Q ss_pred             HHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-------c--ccccCCcEEEEC
Q 009523          278 GLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--ALSLGADLVLHS  345 (532)
Q Consensus       278 ~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-------~--~l~~gaDivv~S  345 (532)
                      ++++.++.   .++++|++|+|+||+|.+.|+++|.++|+++|+++|+|++++.++..       .  ......|+++.|
T Consensus       165 ~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t  244 (402)
T TIGR01821       165 HLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGT  244 (402)
T ss_pred             HHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEe
Confidence            88887752   25899999999999999999999999999999999999997633210       0  111236899999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l~~l~tl~---~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      ++|.+|+.    ||++++++++++.++.....  +....++..++.++..++.+.   .+.++..++.+++.+.|+++ +
T Consensus       245 ~sKa~g~~----GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  319 (402)
T TIGR01821       245 LAKAFGVV----GGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-G  319 (402)
T ss_pred             chhhhccC----CceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc-C
Confidence            99999965    58899999988888754332  334456666666656665432   33444557778888888764 2


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccccccCCCHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      +     +.+++             .++++.+.++. ...+..+.+.|. ..++.++...      .|..      +    
T Consensus       320 ~-----~~~~~-------------~~~i~~i~~~~-~~~a~~~~~~L~~~~Gi~v~~~~------~p~~------~----  364 (402)
T TIGR01821       320 I-----PVIPN-------------PSHIVPVIIGD-AALCKKVSDLLLNKHGIYVQPIN------YPTV------P----  364 (402)
T ss_pred             C-----CcCCC-------------CCCEEEEEeCC-HHHHHHHHHHHHhcCCEEEEeEC------CCCC------C----
Confidence            2     11111             25677887743 234556666653 3355554321      1210      0    


Q ss_pred             HhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          500 LKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                          ...+.||||+....+++.++.+.++|
T Consensus       365 ----~g~~~lRis~~~~~t~edi~~~~~~l  390 (402)
T TIGR01821       365 ----RGTERLRITPTPAHTDKMIDDLVEAL  390 (402)
T ss_pred             ----CCCceEEEEeCCCCCHHHHHHHHHHH
Confidence                02358999987654444444444444

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.90  E-value=3.8e-21  Score=203.07  Aligned_cols=284  Identities=16%  Similarity=0.152  Sum_probs=193.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+..+++++.+++++|.++.+++++|++++..++.+++++||+|+++++.|++....+    ...|.++..++..|++++
T Consensus        86 ~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~l  161 (397)
T PRK06939         86 QDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADL  161 (397)
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHH----HhcCCceEEeCCCCHHHH
Confidence            3567889999999999888999999999999999999999999999999998765433    344666666776789999


Q ss_pred             HHhhcC---C--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-cc------c--cccCCcEEEEC
Q 009523          280 EAALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QK------A--LSLGADLVLHS  345 (532)
Q Consensus       280 e~al~~---~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~------~--l~~gaDivv~S  345 (532)
                      ++.+++   .  ++++|++++..|++|.+.++++|.++|+++|+++|+|++|..++. ..      .  +..++|+++.|
T Consensus       162 ~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S  241 (397)
T PRK06939        162 EAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGT  241 (397)
T ss_pred             HHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEE
Confidence            888753   2  588999888899999999999999999999999999999854321 10      1  11256899999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +||+++|.   .+|++++++++++.++....  .+++...+..++.+...++.+   ....++..++.+.+.+.|++.. 
T Consensus       242 ~sK~~~g~---r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-  317 (397)
T PRK06939        242 LGKALGGA---SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAG-  317 (397)
T ss_pred             CHHHhCcc---CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-
Confidence            99999654   47999999999888875432  223333444344344444433   2334455577777788887642 


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +. + .+                +.++++.+.++. ......|.+.|...++.+. ++.+     +..            
T Consensus       318 ~~-~-~~----------------~~~~~~~~~~~~-~~~~~~~~~~L~~~gI~v~-~~~~-----~~~------------  360 (397)
T PRK06939        318 FT-L-GP----------------GEHPIIPVMLGD-AKLAQEFADRLLEEGVYVI-GFSF-----PVV------------  360 (397)
T ss_pred             CC-c-CC----------------CCCCEEEEEECC-HHHHHHHHHHHHHCCceEe-eeCC-----CCC------------
Confidence            21 1 11                124566665643 2345567776655566665 2211     100            


Q ss_pred             hcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          501 KYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                        +-..+.||++++.    ++.++.++.|.++++
T Consensus       361 --~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~  392 (397)
T PRK06939        361 --PKGQARIRTQMSAAHTKEQLDRAIDAFEKVGK  392 (397)
T ss_pred             --CCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence              0113689999876    334445555555544

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.90  E-value=6e-21  Score=202.84  Aligned_cols=282  Identities=16%  Similarity=0.166  Sum_probs=180.6

Q ss_pred             HHHHHHHHhhhCC---CcEEEeCC-HHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC------
Q 009523          204 VVVEEKMSALEGA---ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  273 (532)
Q Consensus       204 ~~Le~~lA~l~ga---~~~i~~sS-G~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~------  273 (532)
                      +.+.+.+++..|.   ++.+++++ +++|+..++.+++++||+|++++|+|......+    ...+..+..++.      
T Consensus        77 ~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~----~~~~~~~~~v~~~~~~~~  152 (402)
T PRK06107         77 KAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMV----LANDGTPVIVACPEEQGF  152 (402)
T ss_pred             HHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHH----HHcCCEEEEecCCcccCC
Confidence            4444445544454   23344555 569999999999999999999999888754333    223334434432      


Q ss_pred             -CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhC-CCEEEEECCCCCCCc----ccc-cc-----cC
Q 009523          274 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKK-GAIVCIDGTFATPLN----QKA-LS-----LG  338 (532)
Q Consensus       274 -~dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~-gi~lIvDet~a~~~~----~~~-l~-----~g  338 (532)
                       .|++++++++++ ++++|++++|+||||.+++.   ++|+++|+++ |+++|+|++|.....    ... ..     .+
T Consensus       153 ~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~  231 (402)
T PRK06107        153 KLTPEALEAAITP-RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD  231 (402)
T ss_pred             CCCHHHHHhhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence             257899998876 69999999999999999974   6778888998 999999999753211    011 11     12


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~~la~~  414 (532)
                      ..+++.|+||.++.+| .+.||+++++++++.++......+...+...++++...++    .+....+...++...+.+.
T Consensus       232 ~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK06107        232 RVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALAL  310 (402)
T ss_pred             CEEEEeccchhhcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            4588999999997565 5689999999999998887765555566666655555443    2333344455667777788


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--------CH--HHHHHHHHH-cCCCceeecCCCccccc
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--------DL--TATIKFIDA-LKIPYIAPSFGGCESIV  483 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--------~~--~~~~~~l~~-L~~~~i~vs~G~~~sl~  483 (532)
                      |++++++. +..|.                .|..+|+.++.        +.  .....++.. ++..++.+..|..+   
T Consensus       311 L~~~~g~~-~~~p~----------------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~F---  370 (402)
T PRK06107        311 LNAIPGLS-CLVPD----------------GAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY---  370 (402)
T ss_pred             HhcCCCCc-ccCCC----------------cceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCcccc---
Confidence            87765432 21111                35567777631        10  122344433 34457777766432   


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                                         |. ++++|||++.+  +.++.++.|.+.+++
T Consensus       371 -------------------g~-~~~iRis~~~~~e~l~~~l~~l~~~l~~  400 (402)
T PRK06107        371 -------------------GL-SPYFRLSIATSLETLEEACARIERAVAA  400 (402)
T ss_pred             -------------------CC-CCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence                               21 46899999973  223344555555543

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=9e-22  Score=204.36  Aligned_cols=271  Identities=17%  Similarity=0.221  Sum_probs=183.5

Q ss_pred             CCCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          194 EYGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       194 ~Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .+.+|+.+....|+++++++++.+ +.|++++|+ +++..++..+  +||+|+++.|+|....    ...+..|+++..+
T Consensus        48 ~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v  121 (337)
T PRK03967         48 PFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYS----FYAKLNGIPVIDV  121 (337)
T ss_pred             ccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence            356777777889999999999863 455555555 8888777665  7999999999997432    3345678888777


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc---cc-cCCcEE
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---LS-LGADLV  342 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~---l~-~gaDiv  342 (532)
                      +.     .|++.+++.+ + +++++++++|+||||.+.+.++|.++++ +++++|+|++|........   .. ....++
T Consensus       122 ~~~~~~~~d~~~l~~~~-~-~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~  198 (337)
T PRK03967        122 PLKEDFTIDGERIAEKA-K-NASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLIL  198 (337)
T ss_pred             ecCCCCCcCHHHHHHhc-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEE
Confidence            54     3678888765 3 5889999999999999999999999995 6999999999864321111   11 123588


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      +.|+||.++.+| ++.||+++++++++.++......  ..+.....++...++   .+..+++...+++..+.+.|.++ 
T Consensus       199 l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-  274 (337)
T PRK03967        199 LRTFSKAFGLAG-IRAGYAIANEEIIDALYRIKPPF--SLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY-  274 (337)
T ss_pred             EecchHhhcchh-hhheeeecCHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence            999999998555 56899999999999888765433  234554444443333   33334444555666666666542 


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                           .+|.                .|..+|+.++        +.+.|...++.+..++                     
T Consensus       275 -----~~~~----------------~~~~~~~~~~--------~~~~l~~~gi~v~~~~---------------------  304 (337)
T PRK03967        275 -----AYPS----------------DANFLLLKLD--------AYDYLLENGIVVRKLS---------------------  304 (337)
T ss_pred             -----cCCC----------------CCcEEEEhHH--------HHHHHHHCCEEEEeCC---------------------
Confidence                 1221                3567777653        2233333355554321                     


Q ss_pred             HhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          500 LKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                         +..++++||+++. ++.+.+++.|.++++
T Consensus       305 ---~~~~~~~Ri~~~~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        305 ---GRLEGHIRVTVGKREENDEFIKALKEIKE  333 (337)
T ss_pred             ---CCCCCeEEEecCCHHHHHHHHHHHHHHHH
Confidence               0125699999997 456677777776654

>PRK14012 cysteine desulfurase; Provisional

Probab=99.90  E-value=1.2e-21  Score=208.27  Aligned_cols=299  Identities=19%  Similarity=0.205  Sum_probs=191.7

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          200 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all----~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+..+++|+.+++++|++  ++++++||++|+.+++.++.    ++||+|++++.+|+++...+. .++..|+++++++.
T Consensus        48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~-~~~~~g~~~~~v~~  126 (404)
T PRK14012         48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLDP  126 (404)
T ss_pred             HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHH-HHHhCCCEEEEEcc
Confidence            356788999999999974  47777888899998887763    789999999999988765553 34556888888864


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCc
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  347 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~s  347 (532)
                      +     |+++|++++++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|+++.|++
T Consensus       127 ~~~g~~d~~~l~~~i~~-~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~  205 (404)
T PRK14012        127 QSNGIIDLEKLEAAMRD-DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAH  205 (404)
T ss_pred             CCCCcCCHHHHHHhcCC-CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehh
Confidence            3     79999999987 699999999999999999999999999999999999999876533 3444668999999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHHhh-------hcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~~~-------~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la~~L~  416 (532)
                      |.+|++|   .|+++.+++...++.....       ...++.+......+..+++.    .....++..+.++++.+.|+
T Consensus       206 K~~gp~g---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~  282 (404)
T PRK14012        206 KIYGPKG---IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIK  282 (404)
T ss_pred             hccCCCc---eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            9887664   3444444332222211000       01112222221111122222    22334455566677777777


Q ss_pred             hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc-ccCccccccCCC
Q 009523          417 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV-DQPAIMSYWDLS  495 (532)
Q Consensus       417 ~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~-~~pa~~s~~~~~  495 (532)
                      +.+.+... .+.....           .....++|.+.+.    ..++..|+  +++++.|..+... .+|.        
T Consensus       283 ~~~~i~~~-~~~~~~~-----------~~~~~~~~~~~~~----~~~~~~l~--~~~i~~g~~~~~~~~~~~--------  336 (404)
T PRK14012        283 DIEEVYLN-GDLEQRV-----------PGNLNVSFNYVEG----ESLIMALK--DLAVSSGSACTSASLEPS--------  336 (404)
T ss_pred             cCCCEEEe-CCccccC-----------CCEEEEEEeCcCH----HHHHHhCC--CeEEEchhhhCCCCCCCC--------
Confidence            77766422 1100000           0122456665321    34566665  5677776543211 1111        


Q ss_pred             HHHHHhcCC----CCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGI----MDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi----~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                       .....+|+    ..+.||||++..++++.++.+.++|+
T Consensus       337 -~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~  374 (404)
T PRK14012        337 -YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVR  374 (404)
T ss_pred             -HHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHH
Confidence             11123444    35799999998766666666665554

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.90  E-value=4.4e-21  Score=203.92  Aligned_cols=279  Identities=13%  Similarity=0.097  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALE----GA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ....|++.+|+++    |.    ++.|++++| ++|+..++.+++++||.|++++|+|.....    .++..|+++..++
T Consensus        72 G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~  147 (403)
T PRK08636         72 GIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQ----AFILAGGNVHKMP  147 (403)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH----HHHhcCCEEEEEe
Confidence            4556777777765    52    224555555 599999999999999999999999988543    3455677777664


Q ss_pred             C-------CCHH----HHHHhhcC--CCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCcc----
Q 009523          273 P-------ADME----GLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       273 ~-------~dle----~Le~al~~--~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~----  332 (532)
                      .       .|++    .++++++.  .++++|++++|+||||.+++.   ++|+++|++|++++|+|++|......    
T Consensus       148 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~  227 (403)
T PRK08636        148 LEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKT  227 (403)
T ss_pred             ccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCC
Confidence            2       2444    45666642  268999999999999999985   67888899999999999997643211    


Q ss_pred             cc---ccc--CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH----HHHHHHHHH
Q 009523          333 KA---LSL--GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQ  403 (532)
Q Consensus       333 ~~---l~~--gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l----~tl~~r~~~  403 (532)
                      .+   ++.  ...+++.|+||.+|.+| .+.||+++++++++.+.......+...+......+...+    +.+....+.
T Consensus       228 ~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~  306 (403)
T PRK08636        228 PSILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRET  306 (403)
T ss_pred             CChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence            11   111  22356789999997665 578999999999988877654322222222222222222    222222334


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHH-cCCCceeecCCCcc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDA-LKIPYIAPSFGGCE  480 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--~~~~~~l~~-L~~~~i~vs~G~~~  480 (532)
                      ..++.+.+.+.|+++ ++ .+..|                ..|.++|+.++...  .....|.+. ++..++.+..|..+
T Consensus       307 ~~~~~~~l~~~L~~~-~~-~~~~p----------------~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f  368 (403)
T PRK08636        307 YRKRRDVLIESFANA-GW-ELQKP----------------RASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGF  368 (403)
T ss_pred             HHHHHHHHHHHHHHC-CC-cccCC----------------CcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhh
Confidence            456666777788764 22 12222                14678899987421  123455544 33457777766443


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      .                     +..++++||+++. +.+++.+.+
T Consensus       369 ~---------------------~~~~~~iRi~~~~-~~~~l~~~~  391 (403)
T PRK08636        369 G---------------------EYGDEYVRIALIE-NENRIRQAA  391 (403)
T ss_pred             C---------------------cCCCCeEEEEecC-CHHHHHHHH
Confidence            1                     0124799999994 444443333

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.90  E-value=5.2e-21  Score=207.98  Aligned_cols=292  Identities=14%  Similarity=0.107  Sum_probs=184.0

Q ss_pred             CCCCch-hHHHHHHHHHhhhC----C----CcEEEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNP-TTVVVEEKMSALEG----A----ESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~g----a----~~~i~~sSG~~Ai~~al~all-~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      ..|+.+ ....|+++||++++    .    +++++++++++|+..++.+++ ++||+|+++.|+|.....    .++..|
T Consensus       109 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~----~~~~~g  184 (481)
T PTZ00377        109 GAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSA----AITLLG  184 (481)
T ss_pred             cCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHH----HHHHcC
Confidence            334433 46678888888763    1    344555555599999999998 799999999999987553    344567


Q ss_pred             cEEEEeCC-------CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCC
Q 009523          266 ITATVIDP-------ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  330 (532)
Q Consensus       266 v~v~~vd~-------~dle~Le~al~~~-----~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~  330 (532)
                      .++..++.       .|+++|++++++.     ++|+|++++|+||||.+++   +++|+++|+++|+++|+||+|....
T Consensus       185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~  264 (481)
T PTZ00377        185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI  264 (481)
T ss_pred             CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence            66666542       2679999988631     5899999999999999998   7788999999999999999976432


Q ss_pred             c-----cccc-----ccC-------CcEEEECCcccc-CCCCCcEEEEEEe---ChHHHHHHHHHhhhcCCCccHHHHHH
Q 009523          331 N-----QKAL-----SLG-------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYL  389 (532)
Q Consensus       331 ~-----~~~l-----~~g-------aDivv~S~sK~l-gg~gd~~gG~lv~---~~~li~~l~~~~~~~G~~~~~~~a~l  389 (532)
                      .     ...+     .+.       ..++++|+||.+ +.+| .+.||+++   ++++++.+....... .+.+.....+
T Consensus       265 ~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~~~~~-~~~~~~~Q~a  342 (481)
T PTZ00377        265 YDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECG-RRGGYFELTNIPPEVREQIYKLASIN-LCSNVVGQLM  342 (481)
T ss_pred             cCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCc-CceEEEEEeCCCHHHHHHHHHHhhee-cCCChHHHHH
Confidence            1     1010     111       237889999975 4344 46888886   788998887765432 2344444444


Q ss_pred             HHHhHH----------HHHHHHH----HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc-
Q 009523          390 IIRGMK----------TLHLRVQ----QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD-  454 (532)
Q Consensus       390 ~l~~l~----------tl~~r~~----~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~-  454 (532)
                      +...++          .....++    ...++++.+.+.|++++++. +..|.                .|..+|+.++ 
T Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~-~~~p~----------------gg~fl~~~~~l  405 (481)
T PTZ00377        343 TGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS-CQPVE----------------GAMYAFPRIEL  405 (481)
T ss_pred             HHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-eecCC----------------eeEEEEeeccC
Confidence            433331          1222222    23466677788888776553 22221                3456665553 


Q ss_pred             -CCHH----------HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHH
Q 009523          455 -GDLT----------ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDL  521 (532)
Q Consensus       455 -g~~~----------~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dl  521 (532)
                       ....          ....+...++..++.+..|+.+..  .                  -.++++|||++.+  +.++.
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~--~------------------~~~~~~Rls~~~~~e~l~~~  465 (481)
T PTZ00377        406 PEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQ--K------------------PGTYHFRITILPPEEQIEEM  465 (481)
T ss_pred             chhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCC--C------------------CCCCEEEEEECCCHHHHHHH
Confidence             1100          111123344555788887765421  0                  0246899999943  23444


Q ss_pred             HHHHHHHHh
Q 009523          522 KADVLQALH  530 (532)
Q Consensus       522 i~dL~~AL~  530 (532)
                      ++.|.+.++
T Consensus       466 l~rl~~~~~  474 (481)
T PTZ00377        466 VKKIKEFHE  474 (481)
T ss_pred             HHHHHHHHH
Confidence            555555554

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.90  E-value=3.8e-21  Score=200.30  Aligned_cols=272  Identities=22%  Similarity=0.260  Sum_probs=185.0

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEc---CCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          199 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTT---TDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~---~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+..++||+++|+++|.  +++++++||.+|+..++.+++++||+|+++   .+.|....    ..++..|.++.  ..
T Consensus        52 ~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~----~~~~l~ga~~~--~~  125 (346)
T TIGR03576        52 PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIP----RSCKLAGAEYF--ES  125 (346)
T ss_pred             CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHH----HHHHHcCCEEe--cc
Confidence            347889999999999998  789999999999999999999999999975   35565432    34455576653  33


Q ss_pred             CCHHHHHHhhcCCCeeEEEEeCCCCCCCcc---cCHHHHHHHHHhCCCEEEEECCCCCCCc----c-cccccCCcEEEEC
Q 009523          274 ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----Q-KALSLGADLVLHS  345 (532)
Q Consensus       274 ~dle~Le~al~~~~tklV~lesP~NptG~v---~dl~~I~~la~~~gi~lIvDet~a~~~~----~-~~l~~gaDivv~S  345 (532)
                      .++++++. . + ++++|++ +++|++|.+   .|+++|+++|+++|+++++||+|+.+..    . .....++|+++.|
T Consensus       126 ~~l~~l~~-~-~-~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s  201 (346)
T TIGR03576       126 DELSELKK-I-D-GTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTS  201 (346)
T ss_pred             CCHHHHhh-C-c-CceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEec
Confidence            46666543 2 3 5888888 457899999   5788999999999999999999886531    1 1234568999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceE
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAHPKVKR  423 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~~p~v~~  423 (532)
                      +||+++|.   ++|++++++++++.++.....++.+.++..++.+..+++...  .+.+...++...+.+.+.+   + .
T Consensus       202 ~SKalaG~---r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~---~-~  274 (346)
T TIGR03576       202 TDKLMDGP---RGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK---L-N  274 (346)
T ss_pred             cchhcccc---ceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh---C-C
Confidence            99988654   589999999999999887766665556667777777776532  1222222333334444442   1 1


Q ss_pred             EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHh
Q 009523          424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK  501 (532)
Q Consensus       424 V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~  501 (532)
                      + +|.                .++++++.+++.  .+.+.   +.|+..++.+..|..+     +               
T Consensus       275 ~-~~~----------------~~~f~~~~~~~~~~~~~~~---~ll~~~gV~v~~~~~f-----~---------------  314 (346)
T TIGR03576       275 V-ERT----------------PTGFVIKGVEEEKLIEIGL---DLLRNYGIITITAVGM-----P---------------  314 (346)
T ss_pred             C-CcC----------------CCeEEEEeCCCCCHHHHHH---HHHHhCCEEEeCCccc-----C---------------
Confidence            1 121                234788887642  12333   3344456666654321     0               


Q ss_pred             cCCCCCeEEEEecCCC-----HHHHHHHHHHHH
Q 009523          502 YGIMDNLVRFSFGVED-----FEDLKADVLQAL  529 (532)
Q Consensus       502 ~gi~~~~IRlSvG~ed-----~~dli~dL~~AL  529 (532)
                       + .++++|||++.++     .+.+++.|++.|
T Consensus       315 -~-~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       315 -G-ASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             -C-CCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence             1 2579999999866     566666666544

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.9e-21  Score=203.29  Aligned_cols=275  Identities=14%  Similarity=0.128  Sum_probs=177.4

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          197 RYGNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga-~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      +|+++....|++++|++++. .+.|++++| ++++..++.+++++||.|++++|+|....    ......|..+..++. 
T Consensus        61 ~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~----~~~~~~g~~~~~~~l~  136 (357)
T PRK14809         61 SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYG----MSARYHHGEVREYPVS  136 (357)
T ss_pred             cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEEecc
Confidence            34555677899999999985 344555555 59999999999999999999999997433    223344555555432 


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCCcc-cc---cc-cCCc
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-KA---LS-LGAD  340 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~~~-~~---l~-~gaD  340 (532)
                            .+.+++++.. + ++++|++++|+||||.+.+.+++.++++..  ++++|+||+|...... ..   .. ....
T Consensus       137 ~~~~~~~~~~~~~~~~-~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~v  214 (357)
T PRK14809        137 KADDFEQTADTVLDAY-D-GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDV  214 (357)
T ss_pred             cCcCCCcCHHHHHHhh-c-CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCE
Confidence                  1456666554 2 489999999999999999988877777653  7899999997653221 11   11 2345


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHh
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~  417 (532)
                      +++.|+||.++.+| ++.|++++++++++++.+.....  ..+...+.++...+..   +....+...++.+.+.+.|..
T Consensus       215 i~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  291 (357)
T PRK14809        215 AVLRTFSKAYGLAG-LRLGYAVVPEEWADAYARVNTPF--AASELACRAGLAALDDDEHVERTVETARWAREYIREELDA  291 (357)
T ss_pred             EEEecchhHhcCcc-hhheeeecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88899999998655 46899999999998887754322  3455555554444432   222222233334444454432


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      .      .+|                ..|.++++++++    ...|.+.+...++.+..|..+                 
T Consensus       292 ~------~~~----------------~~g~f~~~~~~~----~~~~~~~l~~~gv~v~~g~~f-----------------  328 (357)
T PRK14809        292 P------TWE----------------SAGNFVLAEVGD----ASAVAEAAQERGVIVRDCTSF-----------------  328 (357)
T ss_pred             c------cCC----------------CCCCEEEEECCC----HHHHHHHHHHCCEEEEECccC-----------------
Confidence            1      112                146788998852    234555565557777766432                 


Q ss_pred             HHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 009523          498 ERLKYGIMDNLVRFSFGV-EDFEDLKADVLQAL  529 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL  529 (532)
                           | .+++|||+++. ++.++.++.|.+++
T Consensus       329 -----~-~~~~iRls~~~~~~~~~~l~~L~~~l  355 (357)
T PRK14809        329 -----G-LPECIRITCGTREETERAVEVLNEVL  355 (357)
T ss_pred             -----C-CCCeEEEecCCHHHHHHHHHHHHHHh
Confidence                 1 13689999984 33444555555544

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.90  E-value=1.8e-21  Score=203.18  Aligned_cols=276  Identities=17%  Similarity=0.222  Sum_probs=187.4

Q ss_pred             CCCCCchh-HHHHHHHHHhhhC--------CCcEEEeCCHH-HHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhccc
Q 009523          195 YGRYGNPT-TVVVEEKMSALEG--------AESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       195 Y~R~~~p~-~~~Le~~lA~l~g--------a~~~i~~sSG~-~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      ..+|+.+. ...|++++|++++        .+..+++++|+ +++..++..+ .++||.|++++|+|.....    .++.
T Consensus        37 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~----~~~~  112 (363)
T PF00155_consen   37 FLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIE----AARL  112 (363)
T ss_dssp             CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHH----HHHH
T ss_pred             cccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCccccccc----cccc
Confidence            34555554 8899999999988        33367788887 6666666666 6799999999999998654    4455


Q ss_pred             CCcEEEEeC-------CCCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHH---HHhCCCEEEEECCCCC
Q 009523          264 MGITATVID-------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDL---CHKKGAIVCIDGTFAT  328 (532)
Q Consensus       264 ~Gv~v~~vd-------~~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~l---a~~~gi~lIvDet~a~  328 (532)
                      .|.++..++       ..|+++|++.+++.     ++++|++++|+||||.+.+.+++.++   |+++|+++|+|++|..
T Consensus       113 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~  192 (363)
T PF00155_consen  113 LGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSD  192 (363)
T ss_dssp             TTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred             cCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceec
Confidence            677777776       34899999988763     47899999999999999986655555   9999999999999876


Q ss_pred             CCccc--------ccccCC-cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----
Q 009523          329 PLNQK--------ALSLGA-DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----  395 (532)
Q Consensus       329 ~~~~~--------~l~~ga-Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----  395 (532)
                      .....        ....+. .+++.|+||.+|.+| ++.|++++++++++.++........  +...+..+...+.    
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~  269 (363)
T PF00155_consen  193 LIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPEL  269 (363)
T ss_dssp             GBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccCcccccccccccceeeeeccccccccc-cccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhcccc
Confidence            43321        112233 489999999998665 3578888888999998877665444  3333332222222    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-c
Q 009523          396 ---TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-Y  471 (532)
Q Consensus       396 ---tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~  471 (532)
                         .+..+.++..++.+.+.+.|++. ++.....+                 .|.++++.++.  .....|.+.|... +
T Consensus       270 ~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-----------------~~~~~~~~~~~--~~~~~l~~~L~~~~g  329 (363)
T PF00155_consen  270 VEKWLEELRERLRENRDLLREALEEI-GITVLPPE-----------------AGFFLWVRLDP--NDAEELAQELLEEYG  329 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-----------------BSSEEEEEESH--HHHHHHHHHHHHHHT
T ss_pred             cccccccchhhHHHHHHHHHHHHHHh-hhheeecc-----------------CccEEEEEccc--chHHHHHHHHHHhCC
Confidence               44455666667888888888876 33322111                 35567777753  2445555555443 6


Q ss_pred             eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009523          472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED  520 (532)
Q Consensus       472 i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~d  520 (532)
                      +.+..|..+                      +. +++|||+++.-+.++
T Consensus       330 i~v~pg~~~----------------------~~-~~~iRi~~a~~~~e~  355 (363)
T PF00155_consen  330 ILVRPGSYF----------------------GV-PGYIRISLASHSEED  355 (363)
T ss_dssp             EEEEEGGGG----------------------TS-TTEEEEEGGCSCHHH
T ss_pred             EEEEecCCC----------------------CC-CCEEEEEeccCCHHH
Confidence            666655332                      22 579999994444443

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.89  E-value=8e-21  Score=200.15  Aligned_cols=288  Identities=15%  Similarity=0.110  Sum_probs=194.5

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      +.+...+..++++++++++.|.+..+++++|++++..++.+++++||.|+++++.|++....    +...|+++..++..
T Consensus        72 ~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~----~~~~g~~~~~~~~~  147 (385)
T TIGR01825        72 TIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDG----LRLTKATKKIYKHA  147 (385)
T ss_pred             cccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHH----HHhcCCceEEeCCC
Confidence            33444677899999999999988889999999999989999999999999999999875432    23356777777777


Q ss_pred             CHHHHHHhhcCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---------cccccCCcEE
Q 009523          275 DMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLV  342 (532)
Q Consensus       275 dle~Le~al~~~---~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---------~~l~~gaDiv  342 (532)
                      |++++++.+++.   ++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+...         .....+.|++
T Consensus       148 d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (385)
T TIGR01825       148 DMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQ  227 (385)
T ss_pred             CHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEE
Confidence            888888877532   5899999999999999999999999999999999999998654211         1123467899


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHh
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl~---~r~~~~~~~a~~la~~L~~  417 (532)
                      +.|+||++++.    +|++++++++++.+.....  .+++..++...+.+..+++.+.   ...++..++.+.+.+.|++
T Consensus       228 ~~s~sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~  303 (385)
T TIGR01825       228 VGTLSKAIGVV----GGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGK  303 (385)
T ss_pred             EEeccHHhhcC----CCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999854    5889999988888865432  2233344444444444454332   2344455667777777765


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      . ++. +..|                 .++++.+.++. ......|.+.|...++.+..++.      |..         
T Consensus       304 ~-g~~-~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~L~~~gi~v~~~~~------~~~---------  348 (385)
T TIGR01825       304 L-GYD-TGGS-----------------ETPITPVVIGD-EKAAQEFSRRLFDEGIFAQSIVF------PTV---------  348 (385)
T ss_pred             c-CCC-CCCC-----------------CCCEEEEEECC-HHHHHHHHHHHHHCCcEEcccCC------CCC---------
Confidence            3 221 1111                 13466666643 22345666666444665542211      100         


Q ss_pred             HHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          498 ERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                           ....+.||+++..    |+.+++++.|++.++
T Consensus       349 -----~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~  380 (385)
T TIGR01825       349 -----PRGTARIRNIPTAEHTKDDLDQALDAYEKVGK  380 (385)
T ss_pred             -----CCCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence                 0124689998864    344455555555543

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.89  E-value=4.7e-21  Score=203.82  Aligned_cols=284  Identities=18%  Similarity=0.174  Sum_probs=194.6

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  276 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dl  276 (532)
                      .++...+|+++||+++|.+++++++||++|+..++..+.+  +++.|+.....|.+....    +...++++..++..|+
T Consensus        89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~----~~~~~~~~~~~~~~d~  164 (407)
T PRK09064         89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEG----IRRSRCEKHIFRHNDV  164 (407)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHH----HHHcCCcEEEECCCCH
Confidence            4788999999999999988899999999998888887754  777777666566554332    2334666666777788


Q ss_pred             HHHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-c------c--ccccCCcEEEE
Q 009523          277 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q------K--ALSLGADLVLH  344 (532)
Q Consensus       277 e~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~------~--~l~~gaDivv~  344 (532)
                      +++++.++.   .++++|++++|+||+|.+.|+++|.++|+++|+++|+||+++.+.. .      .  ......|+++.
T Consensus       165 ~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~  244 (407)
T PRK09064        165 AHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEG  244 (407)
T ss_pred             HHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEE
Confidence            888888752   2689999999999999999999999999999999999999863321 0      1  11124589999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHhCC
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l~~l~tl~~---r~~~~~~~a~~la~~L~~~p  419 (532)
                      |++|.+|..    ||++++++++++.++.....  +....++..+..++..++.+..   ..++..++.+++.+.|++. 
T Consensus       245 t~sKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-  319 (407)
T PRK09064        245 TLAKAFGVM----GGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-  319 (407)
T ss_pred             ecchhhhcc----CceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-
Confidence            999999865    58899999988887654432  2334566666666666655432   2455667778888888764 


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccccccCCCHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSE  498 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~  498 (532)
                      ++.     .++             ..++++.+.+++ ...+..+.+.|. ..++.+....      .|..      +   
T Consensus       320 g~~-----~~~-------------~~~~iv~i~~~~-~~~~~~l~~~L~~~~gi~v~~~~------~p~~------~---  365 (407)
T PRK09064        320 GIP-----VMP-------------NESHIVPVMVGD-PEKCKKASDMLLEEHGIYVQPIN------YPTV------P---  365 (407)
T ss_pred             CCC-----CCC-------------CCCCEEEEEeCC-HHHHHHHHHHHHHhCCEEEeeEC------CCCC------C---
Confidence            221     111             125678887753 234556666653 3355554321      1110      0   


Q ss_pred             HHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          499 RLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       499 ~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                           ...+.||||++..++++.++.+.++|+
T Consensus       366 -----~~~~~lRis~~~~~t~edi~~l~~~l~  392 (407)
T PRK09064        366 -----RGTERLRITPTPFHTDEMIDHLVEALV  392 (407)
T ss_pred             -----CCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence                 013579999997666555555555554

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.89  E-value=3.2e-21  Score=201.72  Aligned_cols=268  Identities=17%  Similarity=0.170  Sum_probs=173.9

Q ss_pred             CCCCchh-HHHHHHHHHhhh----C---C-CcEEEeCCH-HHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          196 GRYGNPT-TVVVEEKMSALE----G---A-ESTVIMASG-MSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~----g---a-~~~i~~sSG-~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      .+|+++. ..+|++++++++    |   . .+.|++++| ++++..++..+ +++||.|++++|+|.+...    .++..
T Consensus        50 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~----~~~~~  125 (357)
T TIGR03539        50 PGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEV----GALLA  125 (357)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHH----HHHhc
Confidence            3455443 456777777765    3   2 245555555 59999888877 7999999999999986543    33456


Q ss_pred             CcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-------ccc
Q 009523          265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKA  334 (532)
Q Consensus       265 Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-------~~~  334 (532)
                      |.++..++  ++++++    +.++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....       ..+
T Consensus       126 g~~~~~v~--~~~~l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  199 (357)
T TIGR03539       126 GATPVAAD--DPTELD----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDP  199 (357)
T ss_pred             CCEEeccC--ChhhcC----ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceec
Confidence            88877664  444332    236899999999999999997   55788889999999999999763211       111


Q ss_pred             c----ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHH
Q 009523          335 L----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNST  407 (532)
Q Consensus       335 l----~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~  407 (532)
                      .    .....+++.|+||.++.+| .++||+++++++++.++..+...+...+......+...++.   +....+...++
T Consensus       200 ~~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  278 (357)
T TIGR03539       200 RVCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAAR  278 (357)
T ss_pred             ccCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            0    1123489999999997665 56899999999999888766555555555555544444432   22222333456


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      .+.+.+.|+++ ++. +..|.                .|-++++.++.+   ...+.+.|...++.+..|..+.    + 
T Consensus       279 ~~~~~~~L~~~-g~~-~~~p~----------------~~~~~~~~~~~~---~~~~~~~l~~~gV~v~pg~~f~----~-  332 (357)
T TIGR03539       279 RAQLKPALEKA-GFR-IDHSE----------------AGLYLWATRGED---AWDTVDRLAELGILVAPGDFYG----P-  332 (357)
T ss_pred             HHHHHHHHHHc-CCC-CcCCC----------------ccEEEEEECCCC---HHHHHHHHHhCCEEECCccccC----C-
Confidence            66677777764 221 21111                244677776532   3345555555677777664321    0 


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVE  516 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~e  516 (532)
                                      -.+++||||++.+
T Consensus       333 ----------------~~~~~iRis~~~~  345 (357)
T TIGR03539       333 ----------------AGSQHVRVALTAT  345 (357)
T ss_pred             ----------------CCCCeEEEEecCC
Confidence                            0247999999973

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02822 serine palmitoyltransferase

Probab=99.89  E-value=6.5e-21  Score=206.74  Aligned_cols=288  Identities=15%  Similarity=0.128  Sum_probs=198.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      ..+...+||++||++++.++.+++++|..++..++.+++++||.|++....|.++..    .+...+.++.+++.+|.++
T Consensus       152 ~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~----~~~ls~~~~~~~~~nd~~~  227 (481)
T PLN02822        152 TIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQN----GLYLSRSTIVYFKHNDMES  227 (481)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHH----HHHHcCCeEEEECCCCHHH
Confidence            356789999999999999889999999888999999999999999988776655432    2333467888888888887


Q ss_pred             HHHhhcC--------CCe-eEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-------cccc---cCC
Q 009523          279 LEAALNN--------NNV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS---LGA  339 (532)
Q Consensus       279 Le~al~~--------~~t-klV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-------~~l~---~ga  339 (532)
                      ++..+++        .++ ++|++|+++|++|.+.|+++|.++|++||+++|+||++..+..-       ....   ...
T Consensus       228 l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~  307 (481)
T PLN02822        228 LRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKI  307 (481)
T ss_pred             HHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCC
Confidence            7766531        124 79999999999999999999999999999999999998643211       1111   246


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKI  414 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~  414 (532)
                      |+++.|++|.+|..    ||++++++++++.++...  ..+++.+++..+..++.+++.+   ...+++..++.+.+.+.
T Consensus       308 dii~~s~sKalg~~----GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~  383 (481)
T PLN02822        308 DIITAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKG  383 (481)
T ss_pred             eEEEecchhhhhhC----CeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            89999999999854    589999999988876432  2344455566555555555443   34556667788888888


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HHHHHHHHHHcC-CCceeecCCCcccccccC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKFIDALK-IPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~p  486 (532)
                      |++.+++. +..|                +.+.++.+.+++.       ......|.+.|- ..++.++.+..      |
T Consensus       384 L~~~~g~~-~~~~----------------~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~------~  440 (481)
T PLN02822        384 LSDIPGLS-IGSN----------------TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKR------S  440 (481)
T ss_pred             HHhcCCcc-cCCC----------------CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCC------C
Confidence            87654332 1111                1356888888531       122456777763 55777665422      1


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      ..            ..+-.+..+|+++....+++.|+.+.++|
T Consensus       441 ~~------------~~~~~~~~lRi~is~~~t~edI~~~~~~l  471 (481)
T PLN02822        441 TL------------DKCRLPVGIRLFVSAGHTESDILKASESL  471 (481)
T ss_pred             Cc------------CCCCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            10            00111346999887655444444444444

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.89  E-value=3e-21  Score=202.35  Aligned_cols=260  Identities=18%  Similarity=0.178  Sum_probs=171.8

Q ss_pred             HHHHHHHHHhhh----C---C-CcEEEeCCHH-HHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          203 TVVVEEKMSALE----G---A-ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       203 ~~~Le~~lA~l~----g---a-~~~i~~sSG~-~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..+|++++++++    |   . ++.|++++|+ +++..++..+ +++||+|++++|+|....    ..+...|+++..++
T Consensus        64 ~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~  139 (364)
T PRK07865         64 TPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYE----VGARLAGATVVRAD  139 (364)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHH----HHHHhcCCEEEecC
Confidence            456777777765    3   2 3456666665 8998877777 799999999999998754    33455688887765


Q ss_pred             CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----ccc-------ccC
Q 009523          273 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-------SLG  338 (532)
Q Consensus       273 ~~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~l-------~~g  338 (532)
                        ++++++.   . ++++|++++|+||||.+++   +++|.++|+++|+++|+||+|......    ..+       ...
T Consensus       140 --~~~~l~~---~-~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  213 (364)
T PRK07865        140 --SLTELGP---Q-RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHT  213 (364)
T ss_pred             --ChhhCCc---c-cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccc
Confidence              3444432   3 6899999999999999988   467888899999999999997743211    111       112


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L  415 (532)
                      ..+++.|+||.++.+| .++||+++++++++.++......+...+......+...++.   +....+...++...+.+.|
T Consensus       214 ~~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L  292 (364)
T PRK07865        214 GLLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPAL  292 (364)
T ss_pred             eEEEEeechhccCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999997655 56899999999999888766555555566555554444432   2233334446666677777


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      +++ ++. +..|.                .|.++|+.++.+   ...+.+.+...++.+..|..+.    +.        
T Consensus       293 ~~~-g~~-~~~~~----------------~~~~~~~~~~~~---~~~~~~~l~~~gv~v~pg~~f~----~~--------  339 (364)
T PRK07865        293 EAA-GFR-VDHSE----------------AGLYLWATRGED---CWDTVAWLAERGILVAPGDFYG----PA--------  339 (364)
T ss_pred             HHc-CCc-ccCCC----------------ccEEEEEeCCCC---HHHHHHHHHHCCEEEeCccccC----cC--------
Confidence            764 221 21111                244677776432   2344455555677776664321    00        


Q ss_pred             HHHHHhcCCCCCeEEEEecC
Q 009523          496 QSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~  515 (532)
                               .++++||+++.
T Consensus       340 ---------~~~~iRi~~~~  350 (364)
T PRK07865        340 ---------GAQHVRVALTA  350 (364)
T ss_pred             ---------CCCEEEEEecC
Confidence                     24789999986

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.89  E-value=7.3e-22  Score=203.69  Aligned_cols=176  Identities=19%  Similarity=0.244  Sum_probs=150.0

Q ss_pred             HHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccCCC----EEEEcCCCCcchHHH
Q 009523          184 DFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGG----HIVTTTDCYRKTRIF  256 (532)
Q Consensus       184 ~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l~~Gd----~VIv~~~~y~~t~~~  256 (532)
                      .++.+++.. .|++...+..++.|+.+|++.|++  +.+|++++|++++++++.+ ...+|    +||+...+|++....
T Consensus        69 ~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s  147 (428)
T KOG1549|consen   69 EYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDS  147 (428)
T ss_pred             HhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHH
Confidence            344555544 688888888999999999999984  5555666679999999987 44677    999999999987765


Q ss_pred             HHHhcccCCcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-C
Q 009523          257 IETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-L  330 (532)
Q Consensus       257 ~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~  330 (532)
                      + ..++..|+++++++..     |++.++++|++ +|++|.+.+.+|..|.++|+++|.++|+++|+.+++|.+++.+ .
T Consensus       148 ~-~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~-~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i  225 (428)
T KOG1549|consen  148 C-RALQEEGLEVTYLPVEDSGLVDISKLREAIRS-KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKI  225 (428)
T ss_pred             H-HHHHhcCeEEEEeccCccccccHHHHHHhcCC-CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCc
Confidence            5 4567778999998754     78999999998 8999999999999999999999999999999999999998876 5


Q ss_pred             cccccccCCcEEEECCccccCCCCCcEEEEEEeCh
Q 009523          331 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG  365 (532)
Q Consensus       331 ~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~  365 (532)
                      ..+..++++|++..|+||++|+++   .|+++.++
T Consensus       226 ~vDV~eln~D~~s~s~HK~ygp~~---iGaLYvr~  257 (428)
T KOG1549|consen  226 PVDVQELNADFLSISAHKIYGPPG---IGALYVRR  257 (428)
T ss_pred             cccHHHcCchheeeecccccCCCc---ceEEEEcc
Confidence            678889999999999999999997   68888775

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.89  E-value=6.4e-21  Score=202.11  Aligned_cols=280  Identities=15%  Similarity=0.145  Sum_probs=184.6

Q ss_pred             chhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          200 NPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~g--------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ......+++.++++++        .++.++++++++++..++.+++++||.|++++|+|.....    .++..|+++.++
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~----~~~~~g~~v~~v  147 (394)
T PRK06836         72 NAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRF----YVDNHGGKLVVV  147 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH----HHHHcCCEEEEE
Confidence            3556678888888764        2345666666799999999999999999999999988543    345678888887


Q ss_pred             CC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHh------CCCEEEEECCCCCCCcc----
Q 009523          272 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       272 d~------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~------~gi~lIvDet~a~~~~~----  332 (532)
                      +.      .|++++++++++ ++++|++++|+||||.++|   +++|+++|++      ||+++|+|++|......    
T Consensus       148 ~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~  226 (394)
T PRK06836        148 PTDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEV  226 (394)
T ss_pred             ecCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCC
Confidence            54      268999999977 7999999999999999998   5567777888      89999999998643210    


Q ss_pred             cc-c-ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHH------HHHHhhhcC-CCccHHHHHHHHHhHHHHHHHHHH
Q 009523          333 KA-L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ------IRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQ  403 (532)
Q Consensus       333 ~~-l-~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~------l~~~~~~~G-~~~~~~~a~l~l~~l~tl~~r~~~  403 (532)
                      .. . .....+++.|+||.++.+| .+.|++++++++.+.      +.......+ ...+......+.+.++.. .+.+.
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~  304 (394)
T PRK06836        227 PYIFKYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDVSI  304 (394)
T ss_pred             CChHHccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHHHH
Confidence            00 1 1234689999999998665 467899988765432      111122222 233444444444444331 22334


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..++.+.+.+.|+++ ++ .+..|.                .|..+|+.++..  ....+.+.+...++.+..|..+.  
T Consensus       305 ~~~~r~~l~~~L~~~-g~-~~~~~~----------------gg~~~~~~~~~~--~~~~~~~~l~~~gv~v~~g~~f~--  362 (394)
T PRK06836        305 YKRNRDLLYDGLTEL-GF-ECVKPQ----------------GAFYLFPKSPEE--DDVAFCEKAKKHNLLLVPGSGFG--  362 (394)
T ss_pred             HHHHHHHHHHHHHhC-CC-EeecCC----------------ceEEEEEeCCCC--CHHHHHHHHHhCCEEEECchhcC--
Confidence            456667777888775 23 222221                355778777641  23455566666677776664321  


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHH---HHHHHHHHHh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED---LKADVLQALH  530 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~d---li~dL~~AL~  530 (532)
                                           .++++||+++. +.++   .++.|.++++
T Consensus       363 ---------------------~~~~iRi~~~~-~~~~~~~~i~~l~~~l~  390 (394)
T PRK06836        363 ---------------------CPGYFRLSYCV-DTETIERSLPAFEKLAK  390 (394)
T ss_pred             ---------------------CCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence                                 13689999984 4433   3445555554

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.89  E-value=4.9e-21  Score=200.46  Aligned_cols=282  Identities=15%  Similarity=0.118  Sum_probs=188.0

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC-cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+.+....|+++||++++.+ +.|++++| ++++..++.++. +||.|++++|+|....    ..++..|+++..++.
T Consensus        52 ~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~  126 (360)
T PRK07392         52 RHYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYR----RALRAFGATVKELPL  126 (360)
T ss_pred             hcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHH----HHHHHcCCeEEEEec
Confidence            4456666778999999999763 34555555 599999888764 6899999999998754    345557887777653


Q ss_pred             C----------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc----cc---cc
Q 009523          274 A----------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KA---LS  336 (532)
Q Consensus       274 ~----------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~----~~---l~  336 (532)
                      +          +++++++.. + +++++++++|+||||.+++.++|.++++++++ +|+||+|......    ..   ..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~  203 (360)
T PRK07392        127 PLDQPSPGLTLRLQTLPPQL-T-PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA  203 (360)
T ss_pred             ccccCCcccccCHHHHHHhc-c-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh
Confidence            2          345554443 2 58999999999999999999999999999985 6669997654211    11   11


Q ss_pred             -cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH
Q 009523          337 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMA  412 (532)
Q Consensus       337 -~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la  412 (532)
                       ....+++.|+||.++-+| ++.||+++++++++.+.....  ....+....+++...++.   .....+...++++.+.
T Consensus       204 ~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~  280 (360)
T PRK07392        204 EYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQWRD--PWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALF  280 (360)
T ss_pred             cCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhhCC--CCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence             123589999999998555 468999999988888776543  234556655555544442   1111233445667777


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH-cCCCceeecCCCcccccccCccccc
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA-LKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~-L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      +.|+.++++. + +|+                .|.+++++++.   ....+.+. ++..++.+..|..+.          
T Consensus       281 ~~L~~~~~~~-~-~~~----------------~~~fl~~~~~~---~~~~l~~~ll~~~gv~v~pg~~f~----------  329 (360)
T PRK07392        281 QGLASLPGLT-P-LPS----------------AANFLLVQSQG---SALQLQEKLLQQHRILIRDCLSFP----------  329 (360)
T ss_pred             HHHHhCCCcE-E-CCC----------------CCCEEEEEcCC---CHHHHHHHHHhhCCEEEEeCCCCC----------
Confidence            8887765543 2 221                36678888764   23445544 344577777764421          


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHh
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQALH  530 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~ed-~~dli~dL~~AL~  530 (532)
                                 +..+++|||+++..+ .+++.+.|++.+.
T Consensus       330 -----------~~~~~~iRi~~~~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        330 -----------ELGDRYFRVAVRTEAENQRLLEALAAILA  358 (360)
T ss_pred             -----------CCCCCEEEEEeCCHHHHHHHHHHHHHHhh
Confidence                       012579999999854 4666666665543

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.89  E-value=1.1e-20  Score=199.21  Aligned_cols=304  Identities=20%  Similarity=0.185  Sum_probs=205.9

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      .+...+||+++++++|.+++++++||++|+.+++.++ +++||+|+++.++|.++..    .+...|++++++|.     
T Consensus        28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~----~~~~~G~~~~~~~~~~~~~  103 (380)
T TIGR03588        28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATAN----CALYCGAKVDFVDIDPDTG  103 (380)
T ss_pred             ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH----HHHHcCCEEEEEecCCCcC
Confidence            5778999999999999998999999999999999998 8999999999999987653    34567888888865     


Q ss_pred             -CCHHHHHHhhc----CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCC----cEEEE
Q 009523          274 -ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA----DLVLH  344 (532)
Q Consensus       274 -~dle~Le~al~----~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~ga----Divv~  344 (532)
                       .|+++++++++    + +|++|++   +|++|...|+++|.++|+++|+++|+|++++.+...+....|.    |++++
T Consensus       104 ~~d~~~l~~~i~~~~~~-~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~  179 (380)
T TIGR03588       104 NIDEDALEKKLAAAKGK-LPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVF  179 (380)
T ss_pred             CcCHHHHHHHhhcccCC-CceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEE
Confidence             27899999998    5 6899886   5678999999999999999999999999987654333334455    99999


Q ss_pred             CCc--cccCCCCCcEEEEEEe-ChHHHHHHHHHhhh-------------------------cCCCccHHHHHHHHHhHHH
Q 009523          345 SAT--KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV-------------------------LGGALNPNAAYLIIRGMKT  396 (532)
Q Consensus       345 S~s--K~lgg~gd~~gG~lv~-~~~li~~l~~~~~~-------------------------~G~~~~~~~a~l~l~~l~t  396 (532)
                      |+|  |+++.+   .||+++. ++++.++++..+..                         ++..++...+.+.+..++.
T Consensus       180 S~~~~K~~~~~---~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~  256 (380)
T TIGR03588       180 SFHPVKIITTA---EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKK  256 (380)
T ss_pred             ecCCCCccccc---CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHH
Confidence            987  888754   3676665 45676666543210                         1123455666666777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHcCCCceeec
Q 009523          397 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDALKIPYIAPS  475 (532)
Q Consensus       397 l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L~~~~i~vs  475 (532)
                      +..+.++..++++++.+.|.+.|.+. +..+......           ...+..+.++. .......+.+.|+..+|.+.
T Consensus       257 l~~~~~~r~~~~~~~~~~L~~~~~~~-~~~~~~~~~~-----------~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~  324 (380)
T TIGR03588       257 LDRFVAKRREIAARYDRLLKDLPYFT-PLTIPLGSKS-----------AWHLYPILLDQEFGCTRKEVFEALRAAGIGVQ  324 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-CCCCCCCCEe-----------EEEEEEEEECCcCCCCHHHHHHHHHHCCCCcc
Confidence            88888888999999999998877553 1111100000           01123333431 11234556666655566555


Q ss_pred             CCCcccccccCcccc---ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          476 FGGCESIVDQPAIMS---YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       476 ~G~~~sl~~~pa~~s---~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..- ..+..+|....   ...++..+.    +....|+|.++..-.++.++.+.+++++
T Consensus       325 ~~~-~~~~~~~~~~~~~~~~~~p~a~~----~~~~~l~lP~~~~l~~~dv~~i~~~l~~  378 (380)
T TIGR03588       325 VHY-IPVHLQPYYRQGFGDGDLPSAEN----FYLAEISLPLHPALTLEQQQRVVETLRK  378 (380)
T ss_pred             cCC-cccccChhhhccCCcCCCcHHHH----HHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence            331 12222222111   111222111    2357899988865555666667666654

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.89  E-value=8.5e-21  Score=196.27  Aligned_cols=253  Identities=15%  Similarity=0.178  Sum_probs=172.4

Q ss_pred             CCC-CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC-CcEEEEeCC
Q 009523          196 GRY-GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM-GITATVIDP  273 (532)
Q Consensus       196 ~R~-~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~-Gv~v~~vd~  273 (532)
                      .+| ++|...+|+++||+++|.+..+++++|++++..++.+++.+||+|+++.+.|...+...  ..... ++++..++.
T Consensus        28 ~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  105 (333)
T PRK10534         28 DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAG--GAAVLGSIQPQPIDA  105 (333)
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCC--chHHhcCceEEeecC
Confidence            466 79999999999999999988899999999999888889999999999887774322110  01122 245555532


Q ss_pred             -----CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHH---HHHHHHhCCCEEEEECCCCCC------Ccccc
Q 009523          274 -----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATP------LNQKA  334 (532)
Q Consensus       274 -----~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~---I~~la~~~gi~lIvDet~a~~------~~~~~  334 (532)
                           .|+++|+++++++     ++++|++++|+  +|.+.|.++   |.++|+++++++++||+|...      .....
T Consensus       106 ~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~  183 (333)
T PRK10534        106 AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE  183 (333)
T ss_pred             CCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence                 2789999988652     48999999766  599998665   566788999999999985421      01111


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCcc--HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKTLHLRVQQQNSTALRMA  412 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~--~~~a~l~l~~l~tl~~r~~~~~~~a~~la  412 (532)
                      .....|.++.|+||.++..   +||++++++++++.++......+...+  ...+..+...++....++++..++++++.
T Consensus       184 ~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~  260 (333)
T PRK10534        184 ITQYCDSFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLA  260 (333)
T ss_pred             HHhcCCEEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1123466677999988853   466888999999999877765553332  23344444455544456666667788899


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      +.|+++ ++. + +|.                .++++++.+++  .....+.+.|...|+.+..
T Consensus       261 ~~L~~~-g~~-~-~~~----------------~~nfv~~~~~~--~~~~~~~~~l~~~gi~v~~  303 (333)
T PRK10534        261 EQLREA-GAD-V-MRQ----------------DTNMLFVRVGE--EQAAALGEYMRERNVLINA  303 (333)
T ss_pred             HHHHhC-CCc-c-CCC----------------CceEEEEECCc--hhHHHHHHHHHHcCeeecC
Confidence            999875 331 2 221                26688888863  2344555666666666544

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=9.1e-21  Score=197.68  Aligned_cols=284  Identities=21%  Similarity=0.222  Sum_probs=215.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+.+.+||++||+++|.+.+++|+||-.|+..++.+++++||.|+.....|.+...    ..+..+.++..+..+|+++|
T Consensus        83 ~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiid----G~rls~a~~~~f~HnD~~~L  158 (388)
T COG0156          83 SDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIID----GIRLSRAEVRRFKHNDLDHL  158 (388)
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHH----HHHhCCCcEEEecCCCHHHH
Confidence            47889999999999999999999999999999999999999999999999987543    34455678888899999999


Q ss_pred             HHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc-------cc---ccCCcEEEE
Q 009523          280 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------AL---SLGADLVLH  344 (532)
Q Consensus       280 e~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~-------~l---~~gaDivv~  344 (532)
                      |+.+++.     +.++|++|+..+..|.+.|+++|++++++||++++|||+++.++.-.       ..   ....||++.
T Consensus       159 e~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~g  238 (388)
T COG0156         159 EALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVG  238 (388)
T ss_pred             HHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEE
Confidence            9999762     25899999999999999999999999999999999999987664321       11   122489999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCC
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      |++|.||.    +||++.++..+++.++...  ..+...++|..+..+...++.+   ..+.++..++...+.+.+....
T Consensus       239 TlsKAlGs----~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~  314 (388)
T COG0156         239 TLGKALGS----SGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALG  314 (388)
T ss_pred             Echhhhcc----cCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999995    4799999999999887643  3567778888766666666554   4566666677766664444321


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                            ++..++             ...++.+.+. +...+..+.+.|...++.++.      +..|..      |    
T Consensus       315 ------~~~~~s-------------~s~I~pv~~g-d~~~a~~~s~~l~~~Gi~v~~------i~~PTV------p----  358 (388)
T COG0156         315 ------LVLLPS-------------ESPIIPVILG-DEERALEASRALLEEGIYVSA------IRPPTV------P----  358 (388)
T ss_pred             ------CccCCC-------------CCCeeeeEeC-CHHHHHHHHHHHHHCCeeEee------ecCCCC------C----
Confidence                  111111             2457888774 445566666666554655443      233431      1    


Q ss_pred             HhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          500 LKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                          .....||+++...++++.|+.+.++|.+
T Consensus       359 ----~gtarlRi~lta~ht~~~I~~l~~~l~~  386 (388)
T COG0156         359 ----KGTARLRITLTAAHTEEDIDRLAEALSE  386 (388)
T ss_pred             ----CCcceEEEEecCCCCHHHHHHHHHHHHh
Confidence                1235799999999999999999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.89  E-value=1.3e-20  Score=194.13  Aligned_cols=289  Identities=17%  Similarity=0.177  Sum_probs=196.6

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga--------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      +.....+...++++.++++++.        ++.+++++|++++..++.++.++||+|+++.+.|.+...    .++..|.
T Consensus        30 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~----~~~~~~~  105 (350)
T cd00609          30 LGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA----AARLAGA  105 (350)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHCCC
Confidence            3444556677788888877653        356777888899999999999999999999999998654    3445677


Q ss_pred             EEEEeCCC-----CH--HHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHH---HHHHHhCCCEEEEECCCCCCCc-----
Q 009523          267 TATVIDPA-----DM--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV---SDLCHKKGAIVCIDGTFATPLN-----  331 (532)
Q Consensus       267 ~v~~vd~~-----dl--e~Le~al~~~~tklV~lesP~NptG~v~dl~~I---~~la~~~gi~lIvDet~a~~~~-----  331 (532)
                      ++..++..     +.  +.++....+ ++++|++++|+||+|.+.|++++   .++|+++|+++|+|++++.+..     
T Consensus       106 ~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~  184 (350)
T cd00609         106 EVVPVPLDEEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP  184 (350)
T ss_pred             EEEEEecccccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc
Confidence            77777643     12  556666555 79999999999999999986655   4899999999999999765321     


Q ss_pred             ---ccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHH
Q 009523          332 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQ  403 (532)
Q Consensus       332 ---~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~  403 (532)
                         ......+.|+++.|++|+++.++ ..+|++++++ ++.+.++..........+...+..+...++.    +....++
T Consensus       185 ~~~~~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  263 (350)
T cd00609         185 PALALLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRER  263 (350)
T ss_pred             ccccCcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence               12334578999999999998333 3578999888 7888887766554444455544444444433    3333445


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..++++++.+.|++++.... ..                ...|.++++.+++. .....+.+.++..++.+..++.+.. 
T Consensus       264 ~~~~~~~l~~~L~~~~~~~~-~~----------------~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~-  324 (350)
T cd00609         264 YRRRRDALLEALKELGPLVV-VK----------------PSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGE-  324 (350)
T ss_pred             HHHHHHHHHHHHHhcCCccc-cC----------------CCccEEEEEecCCC-ChHHHHHHHHHhCCEEEeccccccc-
Confidence            56778888888887654321 11                12467888888653 2333445555555666665533210 


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                          .....||++++..  ++.++.+.++|+
T Consensus       325 --------------------~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         325 --------------------GGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             --------------------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence                                1357899999998  444555555554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.89  E-value=2.5e-20  Score=196.66  Aligned_cols=210  Identities=20%  Similarity=0.253  Sum_probs=165.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      ..|...+||+++|+++|.+.+++++||++|+.+++.++ +++||+||+++++|.++...    +...|++++++|.    
T Consensus        31 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~----~~~~G~~~v~vd~~~~~  106 (379)
T PRK11658         31 TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNM----IVLLGATPVMVDVDRDT  106 (379)
T ss_pred             CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHH----HHHcCCEEEEEecCCCc
Confidence            46889999999999999999999999999999999999 89999999999999987643    3456888888864    


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc---ccccCCcEEEECCcc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLHSATK  348 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~---~l~~gaDivv~S~sK  348 (532)
                        .|++++++++++ +|++|+   |+|++|.+.|+++|.++|+++|+++|+|++++.+....   ....|.+++.++.+|
T Consensus       107 ~~~d~~~l~~~i~~-~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K  182 (379)
T PRK11658        107 LMVTPEAIEAAITP-RTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIK  182 (379)
T ss_pred             CCcCHHHHHHhccc-CCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCC
Confidence              278999999987 799987   57789999999999999999999999999987543322   234566666666678


Q ss_pred             ccCCCCCcEEEEEEeC-hHHHHHHHHHhhh----------------------cC--CCccHHHHHHHHHhHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV----------------------LG--GALNPNAAYLIIRGMKTLHLRVQQ  403 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~-~~li~~l~~~~~~----------------------~G--~~~~~~~a~l~l~~l~tl~~r~~~  403 (532)
                      .+.++   .||+++.+ +++.++++..+..                      .|  ..++.+.+.+.+..++.++...++
T Consensus       183 ~l~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~  259 (379)
T PRK11658        183 NITCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNAR  259 (379)
T ss_pred             cCccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            88654   37888875 6777777653310                      01  124455677777778888888888


Q ss_pred             HHHHHHHHHHHHHhCC
Q 009523          404 QNSTALRMAKILEAHP  419 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p  419 (532)
                      ..++++++.+.|++.+
T Consensus       260 r~~~a~~~~~~L~~~~  275 (379)
T PRK11658        260 RREIAARYLQALADLP  275 (379)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            8888888888888765

>PRK07908 hypothetical protein; Provisional

Probab=99.89  E-value=1.2e-20  Score=196.63  Aligned_cols=276  Identities=16%  Similarity=0.162  Sum_probs=182.9

Q ss_pred             CCCCc-hhHHHHHHHHHhhhCC-CcEEEeCC-HHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          196 GRYGN-PTTVVVEEKMSALEGA-ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       196 ~R~~~-p~~~~Le~~lA~l~ga-~~~i~~sS-G~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..|+. .....|++++|+++|. ++.|++++ +++++..++.  +++| .+++..|+|....    ..++..|+++..++
T Consensus        52 ~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~v~  124 (349)
T PRK07908         52 AAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPE----AALRAAGIPVHRVV  124 (349)
T ss_pred             hcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHH----HHHHHcCCEEEeec
Confidence            34554 3577899999999986 33455555 4599988887  5675 5667789887643    34566788888776


Q ss_pred             CC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc--c---cccCCcEE
Q 009523          273 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--A---LSLGADLV  342 (532)
Q Consensus       273 ~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~--~---l~~gaDiv  342 (532)
                      .+     |++    .+++ +++++++++|+||||.+++.++|.++|++ +.++|+||+|...+...  +   ......++
T Consensus       125 ~~~~~~~d~~----~l~~-~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~  198 (349)
T PRK07908        125 LDPPFRLDPA----AVPD-DADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLV  198 (349)
T ss_pred             cCcccCcChh----Hhcc-CCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEE
Confidence            43     333    3344 68999999999999999999999999975 78899999976432111  1   12233578


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-----MKTLHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~-----l~tl~~r~~~~~~~a~~la~~L~~  417 (532)
                      +.|+||.++.+| ++.|++++++++++.++.....+.  .++.....+...     .+.+....++..++++.+.+.|++
T Consensus       199 i~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  275 (349)
T PRK07908        199 LRSLTKTWSLAG-LRVGYALGAPDVLARLTRGRAHWP--VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA  275 (349)
T ss_pred             EeecccccCCcc-ceeeeeecCHHHHHHHHhcCCCCC--ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999998555 468999999999988876544322  333332222222     223333344555667777888877


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      + ++. +..|.                .|.++|+.+++    ...+.+.++..++.+..|..+.                
T Consensus       276 ~-~~~-~~~p~----------------~g~~~~~~~~~----~~~~~~~l~~~gI~v~~g~~f~----------------  317 (349)
T PRK07908        276 V-GAR-VVDPA----------------AAPFVLVRVPD----AELLRKRLRERGIAVRRGDTFP----------------  317 (349)
T ss_pred             C-CcE-eccCC----------------CceEEEEECCc----HHHHHHHHHhCCEEEEECCCCC----------------
Confidence            6 432 32221                47789999874    2345555555577777765421                


Q ss_pred             HHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          498 ERLKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                           +..+++||||++. ++.+.+++.|++.+.
T Consensus       318 -----~~~~~~vRis~~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        318 -----GLDPDYLRLAVRPRAEVPVLVQALAEILK  346 (349)
T ss_pred             -----CCCCCeEEEEeCCCccHHHHHHHHHHHHh
Confidence                 1135799999986 467778888877664

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=4.9e-21  Score=199.09  Aligned_cols=271  Identities=18%  Similarity=0.202  Sum_probs=181.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +.||+++. ..|++++|+++|..  +.|++++|+ +++..+. .++++|| |+++.|+|....    ..++..|+++..+
T Consensus        48 ~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~-~~~~~g~-v~v~~P~y~~y~----~~~~~~g~~~~~v  120 (339)
T PRK06959         48 WRRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP-ALLPRGR-VGIAPLAYSEYA----PAFARHGHRVVPL  120 (339)
T ss_pred             HHhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH-HhcCCCe-EEEcCCCcHHHH----HHHHHCCCEEEee
Confidence            45688887 99999999999973  567777776 8887654 4678887 888999998754    3455678888887


Q ss_pred             CCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHH---HHhCCCEEEEECCCCCCCcccc---c-ccCCcEEEE
Q 009523          272 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL---CHKKGAIVCIDGTFATPLNQKA---L-SLGADLVLH  344 (532)
Q Consensus       272 d~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~l---a~~~gi~lIvDet~a~~~~~~~---l-~~gaDivv~  344 (532)
                      +.++ +.    +.+ +++++++++||||||.+.+.+++.++   |.+++.++|+||+|.......+   + ....-+++.
T Consensus       121 ~~~~-~~----~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~  194 (339)
T PRK06959        121 DEAA-DT----LPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLR  194 (339)
T ss_pred             cccc-hh----ccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEe
Confidence            7544 22    333 46899999999999999997776665   4578999999999876432111   1 112248999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      |+||.+|.+| ++.||+++++++++.+++....++  .+.....++...++   ......++..++++++.+.|+++ ++
T Consensus       195 SfSK~~gl~G-lRiGy~v~~~~li~~l~~~~~~~~--vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~  270 (339)
T PRK06959        195 SVGKFFGLAG-VRAGFVLAAPALLAALRDALGAWT--VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GF  270 (339)
T ss_pred             cChhhcCCcc-hheEEEecCHHHHHHHHHhcCCCC--CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            9999998665 468999999999999987665433  34444444444442   22333345556777788888875 22


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHh
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK  501 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~  501 (532)
                      . + ++                 .+.++++.++.    ...+.+.|...|+.+..  +                      
T Consensus       271 ~-~-~~-----------------~~~f~~~~~~~----~~~l~~~l~~~GI~vr~--~----------------------  303 (339)
T PRK06959        271 A-V-HA-----------------TPLFSWTDDPR----AAALHAALARRGIWTRY--F----------------------  303 (339)
T ss_pred             C-c-cC-----------------cceEEEEeCCC----HHHHHHHHHhCCeEEEE--C----------------------
Confidence            1 1 01                 24567887652    24455666555665531  0                      


Q ss_pred             cCCCCCeEEEEec-C-CCHHHHHHHHHHHHhh
Q 009523          502 YGIMDNLVRFSFG-V-EDFEDLKADVLQALHA  531 (532)
Q Consensus       502 ~gi~~~~IRlSvG-~-ed~~dli~dL~~AL~~  531 (532)
                       + ..++||||++ . ++.+.+++.|++.++.
T Consensus       304 -~-~~~~lRisi~~~~~e~~~l~~al~~~~~~  333 (339)
T PRK06959        304 -A-PPPSVRFGLPADEAEWQRLEDALAECVPT  333 (339)
T ss_pred             -C-CCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence             0 1358999994 4 4557777777766653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.88  E-value=2.8e-20  Score=197.46  Aligned_cols=256  Identities=19%  Similarity=0.226  Sum_probs=179.1

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------CC-CEEEEcCCCCcchHHHHHHh-------
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKTRIFIETV-------  260 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~---------~G-d~VIv~~~~y~~t~~~~~~~-------  260 (532)
                      ..++...+|+++|+++.+.+.+++++||++|+..+++.+..         +| ++||+....|++........       
T Consensus        80 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~  159 (401)
T PRK00854         80 FRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR  159 (401)
T ss_pred             cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence            45688899999999999988999999999999999987742         23 67888888877743222110       


Q ss_pred             --cccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCccc-
Q 009523          261 --LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQK-  333 (532)
Q Consensus       261 --l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~~~-  333 (532)
                        .......+..++..|+++|++++.+ ++++|++|+|+||+|.+.|    +++|.++|++||+++|+||++.. +... 
T Consensus       160 ~~~~~~~~~~~~~~~~d~~~le~~i~~-~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g-~g~~g  237 (401)
T PRK00854        160 GGFGPFTPGFRVVPFGDAEALEAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTG-LGRTG  237 (401)
T ss_pred             ccCCCCCCCeEEeCCCCHHHHHHHhCC-CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC-CCCCc
Confidence              1222345667788899999999987 7999999999999999997    99999999999999999999852 2211 


Q ss_pred             ------ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHH
Q 009523          334 ------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQN  405 (532)
Q Consensus       334 ------~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~  405 (532)
                            .....+|+++.  +|+++++. ..+|++++++++++.++..........++..+++++..++.+..  ..++..
T Consensus       238 ~~~~~~~~g~~~D~~~~--~K~l~gg~-~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~  314 (401)
T PRK00854        238 KLLAEEHEGIEADVTLI--GKALSGGF-YPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAA  314 (401)
T ss_pred             hHhHHhhcCCCCCEEEe--cccccCCc-cCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence                  22335688885  69998754 34788999998888775322211122477777777777776653  344455


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP  474 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~v  474 (532)
                      ++.+++.+.|++.... .+               ...++.|.++.+.+.++......|.+.|...++.+
T Consensus       315 ~~~~~l~~~L~~~~~~-~~---------------~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v  367 (401)
T PRK00854        315 EMGAYFLEGLRSIRSN-IV---------------REVRGRGLMLAVELEPEAGGARQYCEALKERGLLA  367 (401)
T ss_pred             HHHHHHHHHHHhhccC-ce---------------EEEeccceEEEEEEecCchhHHHHHHHHHHCCeEE
Confidence            5666677777654210 00               01134678888887543334567777776555544

>PRK05839 hypothetical protein; Provisional

Probab=99.88  E-value=2.6e-20  Score=196.15  Aligned_cols=274  Identities=18%  Similarity=0.134  Sum_probs=168.6

Q ss_pred             CCCCCch-hHHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhccc
Q 009523          195 YGRYGNP-TTVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       195 Y~R~~~p-~~~~Le~~lA~l~----ga---~~~i~~sSG~-~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      ..+|+.+ ....|++++|+++    |.   .+.|++++|+ +|+..++..++  ++||.|+++.|+|....    ..+..
T Consensus        53 ~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~  128 (374)
T PRK05839         53 LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYE----GAAIA  128 (374)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhH----HHHHh
Confidence            3445544 2356666666543    52   3456566665 88888888764  57999999999998754    33456


Q ss_pred             CCcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc---c
Q 009523          264 MGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---Q  332 (532)
Q Consensus       264 ~Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~---~  332 (532)
                      .|+++..++.+     +++..+..+ + ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|.....   .
T Consensus       129 ~g~~v~~v~~~~~~~~~~d~~~~~~-~-~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~  206 (374)
T PRK05839        129 SRAKVLLMPLTKENDFTPSLNEKEL-Q-EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPP  206 (374)
T ss_pred             cCCEEEEeecccccCCcCCcchhhh-c-cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCC
Confidence            78888887643     122222233 3 5899999999999999998   45677778999999999999765321   1


Q ss_pred             cc-c---------ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHH
Q 009523          333 KA-L---------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHL  399 (532)
Q Consensus       333 ~~-l---------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~  399 (532)
                      .. .         ..+.-+++.|+||.++.+| .+.||+++++++++.++......+...+......+...+.   .+..
T Consensus       207 ~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  285 (374)
T PRK05839        207 PSLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEF  285 (374)
T ss_pred             CCHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHH
Confidence            01 1         1134588999999987766 5789999999999988776554444444443333332221   1222


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCC
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGG  478 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~  478 (532)
                      ..++..++.+.+.+.|    ++.   .|                ..|.++|+.++..    ..|.+.+. ..++.+..|.
T Consensus       286 ~~~~~~~~~~~~~~~l----~~~---~p----------------~gg~fi~~~~~~~----~~~~~~l~~~~gi~v~pg~  338 (374)
T PRK05839        286 FRNIYAKNLKLAREIL----GIT---IP----------------PATFYVWLPVDND----EEFTKKLYQNEGIKVLPGS  338 (374)
T ss_pred             HHHHHHHHHHHHHHhc----CCC---CC----------------CeeEEEEEeCCCh----HHHHHHHHHHCCEEEeCch
Confidence            2223333333333333    111   12                1477889998643    23444442 3577777764


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHH
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLK  522 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli  522 (532)
                      .+..   +                +..++++|||++. +.+++.
T Consensus       339 ~f~~---~----------------~~~~~~iRis~~~-~~~~~~  362 (374)
T PRK05839        339 FLGR---N----------------GIGKGYVRIALVY-DTPKLE  362 (374)
T ss_pred             hhCC---C----------------CCCCCeEEEEecC-CHHHHH
Confidence            4210   0                1235899999986 344433

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=9.6e-21  Score=196.55  Aligned_cols=244  Identities=15%  Similarity=0.178  Sum_probs=166.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhC---C-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEE
Q 009523          195 YGRYGNPTTVVVEEKMSALEG---A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  269 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~g---a-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~  269 (532)
                      +++|+.+....|+++++++++   . ++.|++++|+ +++..++.++    |.|++.+|+|....    ..++..|+++.
T Consensus        50 ~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~----~~~~~~g~~~~  121 (335)
T PRK14808         50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYR----IFAKAVGAKFL  121 (335)
T ss_pred             hhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHH----HHHHHcCCeEE
Confidence            466777788899999999997   3 3455555555 9999988877    78999999998744    44566788888


Q ss_pred             EeCCCC---HHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---ccc-ccCCcEE
Q 009523          270 VIDPAD---MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KAL-SLGADLV  342 (532)
Q Consensus       270 ~vd~~d---le~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---~~l-~~gaDiv  342 (532)
                      .++.++   ++..  .+.  ++++|++++|+||||.+.+.+++.+++ ++++++|+||+|......   ... .....++
T Consensus       122 ~v~~~~~~~~~~~--~~~--~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~  196 (335)
T PRK14808        122 EVPLTKDLRIPEV--NVG--EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAV  196 (335)
T ss_pred             EecCCCcCCCChh--Hcc--CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEE
Confidence            876531   1111  232  479999999999999999999999998 579999999997653211   111 1223588


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      +.|+||.++.+| .+.|++++++++++.+.......+  .+.....++...+   +.+..+.+...++.+.+.+.|++. 
T Consensus       197 ~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-  272 (335)
T PRK14808        197 IRTFSKAFSLAA-QRIGYVVSSEKFIDAYNRVRLPFN--VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-  272 (335)
T ss_pred             EEechhhccCcc-cceEEEEeCHHHHHHHHHhcCCCC--CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            999999999555 467999999999998877653333  3344333333333   333444455556667778888775 


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeec
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS  475 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs  475 (532)
                      ++. + +|.                .|+++|+.+++.  ....+.+.+...|+.+.
T Consensus       273 g~~-~-~~~----------------~g~f~~~~l~~~--~~~~~~~~l~~~Gi~V~  308 (335)
T PRK14808        273 GYR-I-TDS----------------RGNFVFIFMEKE--EKERLLEHLRAKNIAVR  308 (335)
T ss_pred             CCE-E-CCC----------------CCeEEEEeCCCc--cHHHHHHHHHHCCeEEE
Confidence            232 2 221                367899998742  22556666665566554

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.88  E-value=4.6e-20  Score=194.33  Aligned_cols=257  Identities=15%  Similarity=0.133  Sum_probs=183.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .+.++++++.++++.|.+++++++||++|+.+++.++ ++|||+||+++++|.++...+    ...|++++++|.+    
T Consensus        30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~----~~~G~~~v~vd~d~~~~  105 (376)
T TIGR02379        30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTM  105 (376)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcC
Confidence            5779999999999999999999999999999999887 899999999999999876433    4568888888743    


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc--ccccCCcEEEECCc--c
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSAT--K  348 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~--~l~~gaDivv~S~s--K  348 (532)
                        |++++++++++ +|++|+   |+||+|...|+++|.++|+++|+++|+|++++.+...+  +...-.|+.++|++  |
T Consensus       106 ~~d~~~le~~i~~-~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K  181 (376)
T TIGR02379       106 NIDETLIESAITH-RTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETK  181 (376)
T ss_pred             CCCHHHHHHhcCc-CceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCC
Confidence              68899999987 799986   67889999999999999999999999999977543222  23222378888875  5


Q ss_pred             ccCCCCCcEEEEEEeC-hHHHHHHHHHhhh-------------------cC--CCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV-------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNS  406 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~-~~li~~l~~~~~~-------------------~G--~~~~~~~a~l~l~~l~tl~~r~~~~~~  406 (532)
                      .+..++  .||+++.+ +++.++++..+..                   .|  ..++...+...+..++.++...++..+
T Consensus       182 ~l~~g~--~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~  259 (376)
T TIGR02379       182 NYTSGG--EGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLA  259 (376)
T ss_pred             cCcccC--CceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHH
Confidence            555332  26776654 7888887755431                   11  224456677777888889888888888


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      ++++..+.|.+.+....+..|..+....+         .-.++.+.++.. .....+++.|+..+|.+..
T Consensus       260 ~~~~y~~~L~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~-~~r~~l~~~L~~~gI~~~~  319 (376)
T TIGR02379       260 TWQLYQDALKPLEEKGIIELPSIPNGCQH---------NAHMFYIKLKDE-DDRNELIKYLKEQEIMAVF  319 (376)
T ss_pred             HHHHHHHHhccCCcCCeeeCCCCCCCCee---------eeEEEEEEECCc-CCHHHHHHHHHHCCCCccc
Confidence            88888888876542111223332211110         113556667532 2345667777766766554

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.88  E-value=3.3e-20  Score=197.99  Aligned_cols=221  Identities=19%  Similarity=0.213  Sum_probs=153.6

Q ss_pred             CCCCCCCC--CchhHHHHHH----HHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhccc
Q 009523          191 ASFEYGRY--GNPTTVVVEE----KMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       191 ~~~~Y~R~--~~p~~~~Le~----~lA~l~ga~~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      .++.++|+  |+|++++||+    ++++++|.+.+++ ++||+.|+..++.+++++||+|++++..|.+....- .....
T Consensus        58 ~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g-~~~~~  136 (416)
T PRK13034         58 EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHG-AKVSL  136 (416)
T ss_pred             CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecC-Cccee
Confidence            45677887  7899999999    9999999999865 589999999999999999999999999998732100 00000


Q ss_pred             CCcEE--EEeCC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-----
Q 009523          264 MGITA--TVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----  330 (532)
Q Consensus       264 ~Gv~v--~~vd~------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-----  330 (532)
                      .+...  ..++.      .|++++++.++..++++|+++.+.  +|...|+++|.++|+++|+++++|++++.+.     
T Consensus       137 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~  214 (416)
T PRK13034        137 SGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGE  214 (416)
T ss_pred             ccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCC
Confidence            11111  22222      589999998855468999986654  5788899999999999999999999955432     


Q ss_pred             cccccccCCcEEEECCccccCCCCCcEEEEEEeChH-HHHHHHHHhhh--cCCCccHHHHHHHHHhHHHH----HHHHHH
Q 009523          331 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL----HLRVQQ  403 (532)
Q Consensus       331 ~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~-li~~l~~~~~~--~G~~~~~~~a~l~l~~l~tl----~~r~~~  403 (532)
                      ...++. ++|++++|+||+++|+.   ||+++++++ +.+.++.....  .+....+..+.++...++.+    ..+.++
T Consensus       215 ~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~  290 (416)
T PRK13034        215 HPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQ  290 (416)
T ss_pred             CCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            223333 58999999999997764   688777654 44444443211  11222333333332222222    234577


Q ss_pred             HHHHHHHHHHHHHhC
Q 009523          404 QNSTALRMAKILEAH  418 (532)
Q Consensus       404 ~~~~a~~la~~L~~~  418 (532)
                      ..++++++++.|++.
T Consensus       291 l~~~a~~l~~~L~~~  305 (416)
T PRK13034        291 VIANAQALAEVLKER  305 (416)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            778999999999876

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.88  E-value=3.9e-20  Score=193.70  Aligned_cols=258  Identities=17%  Similarity=0.165  Sum_probs=173.6

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          201 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      ...+++++.+++++|++    ..++++||+++++.++.+++.+||++++..+.+.+..  +...++..|++++.++.+  
T Consensus        35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~  112 (363)
T TIGR02326        35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEV  112 (363)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence            45677899999999984    2556788899999999999889888766555554432  224456778888877542  


Q ss_pred             ---CHHHHHHhhcCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccc
Q 009523          275 ---DMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       275 ---dle~Le~al~~~-~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~  349 (532)
                         |+++++++++++ ++++|++.++.||||.+.|+++|.++||++|+++++|++++.+ .+.+...+++|+++.|++|+
T Consensus       113 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~  192 (363)
T TIGR02326       113 EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKC  192 (363)
T ss_pred             CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccc
Confidence               789999998753 4678888899999999999999999999999999999987643 23445567899999999999


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHHHHhh---------------hcC---CCccHHHHHHHHHhHHH------HHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIRNLHH---------------VLG---GALNPNAAYLIIRGMKT------LHLRVQQQN  405 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~~~~~---------------~~G---~~~~~~~a~l~l~~l~t------l~~r~~~~~  405 (532)
                      ++|+.+  .|+++.+++.++++.....               ..+   .+.+....+.+..+++.      +..+.++..
T Consensus       193 l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~  270 (363)
T TIGR02326       193 IQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQ  270 (363)
T ss_pred             cccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            865532  5889998887765431000               001   12233333333333332      234456666


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCC
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      +++.++.+.|+++ ++..+..+..              ..+.+++|.++.. ......+.+.|+..++.++.|
T Consensus       271 ~~~~~l~~~L~~~-g~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g  328 (363)
T TIGR02326       271 QNQKTLVAGMRAL-GFEPLLDDEI--------------QSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPG  328 (363)
T ss_pred             HHHHHHHHHHHHc-CCeeccCccc--------------CCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECC
Confidence            7778888888775 3322211110              1244677887642 123445666666667777655

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK06855 aminotransferase; Validated

Probab=99.88  E-value=4.8e-20  Score=197.85  Aligned_cols=232  Identities=14%  Similarity=0.137  Sum_probs=146.5

Q ss_pred             hhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ....+||+.+|+++    |.    +++++++++++|+..++. ++.+||.|++++|+|+.... .  .....|+++..++
T Consensus        73 ~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~-~--~~~~~g~~~v~v~  148 (433)
T PRK06855         73 KGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSS-A--EAAHAGYPPVTYR  148 (433)
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHH-H--HHHhcCCeEEEEe
Confidence            34566777777775    32    345555555699988875 78999999999999987331 1  1122355554443


Q ss_pred             C-------CCHHHHHHhhcC-CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----cc---
Q 009523          273 P-------ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA---  334 (532)
Q Consensus       273 ~-------~dle~Le~al~~-~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~---  334 (532)
                      .       .|+++|+++++. .+++++++++|+||||.+++   +++|+++|+++|++||+||+|......    .+   
T Consensus       149 ~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~  228 (433)
T PRK06855        149 LDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSE  228 (433)
T ss_pred             cccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHH
Confidence            1       278999999863 25899999999999999998   456778899999999999997653211    11   


Q ss_pred             c-ccCCcEEEECCccccCCCCCcEEEEEEeC-----h---HHHHHHHHHhhhcCCCccHHHHHHHHHhHH------HHHH
Q 009523          335 L-SLGADLVLHSATKFIGGHNDVLAGSISGS-----G---KLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHL  399 (532)
Q Consensus       335 l-~~gaDivv~S~sK~lgg~gd~~gG~lv~~-----~---~li~~l~~~~~~~G~~~~~~~a~l~l~~l~------tl~~  399 (532)
                      + ..+..|++.|+||.++.+| .+.||++++     +   .+++.+...... ....+.+.+.++.+.++      .+..
T Consensus       229 ~~~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~  306 (433)
T PRK06855        229 VIGDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKMI-EVCSTTLPQMAIPRIMSHPEYKNYLKE  306 (433)
T ss_pred             HcCcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhcc-ccCCChHHHHHHHHhhcCCcHHHHHHH
Confidence            1 1123489999999998665 468888862     2   223333222221 22234444444444442      2223


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      ..+...++.+.+.+.|++++++. +..|.                .|.++|+.+++
T Consensus       307 ~~~~~~~r~~~~~~~L~~~~~~~-~~~p~----------------gg~~~w~~l~~  345 (433)
T PRK06855        307 RNKRYEKRSNIAYEKLKDVPGLK-VNRTN----------------GAFYMTVVFED  345 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCee-ccCCC----------------eeEEEeecccc
Confidence            33344566667778887655432 22221                35678888874

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.88  E-value=1.6e-20  Score=200.34  Aligned_cols=299  Identities=15%  Similarity=0.156  Sum_probs=182.2

Q ss_pred             CCCchh-HHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHhcc-----CCCEEEE-cCCCCcchHHHHHH--
Q 009523          197 RYGNPT-TVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVP-----AGGHIVT-TTDCYRKTRIFIET--  259 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~----g--a-~~~i~~sSG~-~Ai~~al~all~-----~Gd~VIv-~~~~y~~t~~~~~~--  259 (532)
                      +|+++. ...|+++||+++    |  . ++.|++++|+ +|+.+++.+++.     +||.|++ ..|+|++.......  
T Consensus        69 ~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~  148 (416)
T PRK09440         69 NYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEED  148 (416)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccC
Confidence            455443 467888888876    3  2 2445555555 999999999885     6899999 69999875432210  


Q ss_pred             hcccCCcEEEEeC------CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCC
Q 009523          260 VLPKMGITATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  330 (532)
Q Consensus       260 ~l~~~Gv~v~~vd------~~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~  330 (532)
                      .+...+..+..++      ..|+++|+  +.+ +++++++++|+||||.+++   +++|+++|+++++++|+||+|....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~  225 (416)
T PRK09440        149 LFVSYRPNIELLPEGQFKYHVDFEHLH--IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPF  225 (416)
T ss_pred             ceeecccccccccccccccCCCHHHcc--cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccC
Confidence            1122222222222      13677776  344 6899999999999999998   5678888999999999999997532


Q ss_pred             cc----c--ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--HHHH--
Q 009523          331 NQ----K--ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--LHLR--  400 (532)
Q Consensus       331 ~~----~--~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t--l~~r--  400 (532)
                      ..    .  +...+..|++.|+||+ +.+| .+.||+++++++++.+...........+.+...++...++.  +...  
T Consensus       226 ~~~~~~~~~~~~~~~vI~~~SfSK~-~~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~  303 (416)
T PRK09440        226 PGIIFSEATPLWNPNIILCMSLSKL-GLPG-VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSE  303 (416)
T ss_pred             CCcchhhcCccccCCeEEEeccccc-CCCc-ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHH
Confidence            11    1  1112345889999996 5554 67899999999999888766655555565555555554432  1111  


Q ss_pred             ---HHHHHHHHHHHHHHHHhC-CCce-EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeec
Q 009523          401 ---VQQQNSTALRMAKILEAH-PKVK-RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS  475 (532)
Q Consensus       401 ---~~~~~~~a~~la~~L~~~-p~v~-~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs  475 (532)
                         .+...++...+.+.|+++ +.+. .+..|.                .|.++|++++........|.+.+...++.+.
T Consensus       304 ~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~----------------gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~  367 (416)
T PRK09440        304 TVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPE----------------GAIFLWLWFKDLPITTEELYQRLKARGVLVV  367 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCeEEecCC----------------CceEEEEECCCCCCCHHHHHHHHHHCCEEEe
Confidence               112234445566666654 2221 122221                4678899987411223456666656677887


Q ss_pred             CCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       476 ~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                      .|..+.    +..      ..    ......+++|||++.  ++.++.++.|.++++
T Consensus       368 pg~~F~----~~~------~~----~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~  410 (416)
T PRK09440        368 PGHYFF----PGL------DE----DWPHAHQCIRMNYVQDDEEIEKGIAILAEEVE  410 (416)
T ss_pred             chHhhC----CCC------cc----ccCCcCceEEEEecCCHHHHHHHHHHHHHHHH
Confidence            775532    100      00    000013689999974  334445555666554

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.87  E-value=5.1e-20  Score=193.09  Aligned_cols=287  Identities=18%  Similarity=0.188  Sum_probs=190.5

Q ss_pred             hhHHHHHHHHHhhhCCC---c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAE---S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ...+++++.+++++|++   + .++++||++++..++.++..+||+|++..+.|.+..  +...++..|+++..++.   
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~  114 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGED  114 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCC
Confidence            36788999999999974   3 446788899999999999999999999887776643  23456677888887764   


Q ss_pred             --CCHHHHHHhhcCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccc
Q 009523          274 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       274 --~dle~Le~al~~~-~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~  349 (532)
                        .|+++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|+++..+ ...+...+++|+++.|++|+
T Consensus       115 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~  194 (368)
T PRK13479        115 EPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKC  194 (368)
T ss_pred             CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccc
Confidence              3689999988642 4678999999999999999999999999999999999876443 23344456899999999998


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHHHHhhhc--------------C---CCccHHHHHHHHHhHHH------HHHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIRNLHHVL--------------G---GALNPNAAYLIIRGMKT------LHLRVQQQNS  406 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~~~~~~~--------------G---~~~~~~~a~l~l~~l~t------l~~r~~~~~~  406 (532)
                      +.|+.+  .|+++.++++++.+......+              +   .+.+....+.+..+++.      +..+.++..+
T Consensus       195 l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~  272 (368)
T PRK13479        195 IEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYAN  272 (368)
T ss_pred             cccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            755432  499999998887765421100              1   12232222222223322      2344556667


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCccccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      .++.+.+.|+++ ++. +..+.     .+        ..+.++.|.++... .....+.+.|...++.+..|...     
T Consensus       273 ~~~~l~~~L~~~-g~~-~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~-----  332 (368)
T PRK13479        273 NQRTLVAGMRAL-GFE-PLLDA-----EI--------QSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLT-----  332 (368)
T ss_pred             HHHHHHHHHHHc-CCc-ccCCc-----hh--------cCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCC-----
Confidence            777888888776 332 11111     10        12345667665321 23456777776667777554210     


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEe-cC---CCHHHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSF-GV---EDFEDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~---ed~~dli~dL~~AL~  530 (532)
                                         ..+.+|+|. |.   |+.+.+++.|+++++
T Consensus       333 -------------------~~~~iRis~~~~~t~edi~~~l~~L~~~l~  362 (368)
T PRK13479        333 -------------------QVDTFRIGCIGDVDAADIRRLVAAIAEALY  362 (368)
T ss_pred             -------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence                               135799985 63   334445555555554

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.87  E-value=6.9e-20  Score=199.38  Aligned_cols=281  Identities=13%  Similarity=0.179  Sum_probs=174.1

Q ss_pred             HHHHHHHHHhhhC--------C-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcc-cCCcEEEEe
Q 009523          203 TVVVEEKMSALEG--------A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVI  271 (532)
Q Consensus       203 ~~~Le~~lA~l~g--------a-~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~-~~Gv~v~~v  271 (532)
                      ...|+++||++++        . ++.|++++| ++|+..++.++++|||.|++++|.|++...    .+. ..|+++..+
T Consensus        96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~----~~~~~~G~~vv~v  171 (496)
T PLN02376         96 LKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR----DLRWRTGVEIIPV  171 (496)
T ss_pred             cHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH----HHHhhCCCEEEEE
Confidence            3567788887764        2 234555555 599999999999999999999999998543    233 468888777


Q ss_pred             CC-------CCHHHHHHhhc-----CCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----c
Q 009523          272 DP-------ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----Q  332 (532)
Q Consensus       272 d~-------~dle~Le~al~-----~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~  332 (532)
                      +.       .|+++++++++     ..++|+|++++|+||||.+++   +++|+++|+++|+++|+||+|+....    .
T Consensus       172 ~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~  251 (496)
T PLN02376        172 PCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDF  251 (496)
T ss_pred             eCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCc
Confidence            64       25777765532     126899999999999999998   45678889999999999999875321    1


Q ss_pred             cc-ccc---------CCc--EEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---
Q 009523          333 KA-LSL---------GAD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---  396 (532)
Q Consensus       333 ~~-l~~---------gaD--ivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---  396 (532)
                      .+ ...         ..+  +++.|+||.||.+| .+.|+++++ +.+.+.++... .++. .+...++++...++.   
T Consensus       252 ~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l~~~~~~~~-~~~~-vs~~~Q~a~~~~L~d~~~  328 (496)
T PLN02376        252 VSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSVVSCARKMS-SFGL-VSSQTQLMLASMLSDDQF  328 (496)
T ss_pred             ccHHHhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHHHHHHHHHh-hcCC-CCHHHHHHHHHHhCChhH
Confidence            11 001         112  46799999998666 468899885 45555544433 2332 444554444433322   


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH------HHHHHHHHH
Q 009523          397 LHLR----VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL------TATIKFIDA  466 (532)
Q Consensus       397 l~~r----~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~------~~~~~~l~~  466 (532)
                      +...    .++..+..+.+.+.|++. ++. +..|                ..|.++|+.++...      +....|.+.
T Consensus       329 ~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~-~~~~----------------~aG~flwi~l~~~~~~~~~~~~e~~l~~~  390 (496)
T PLN02376        329 VDNFLMESSRRLGIRHKVFTTGIKKA-DIA-CLTS----------------NAGLFAWMDLRHLLRDRNSFESEIELWHI  390 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC----------------CceEEEEEEchhhhccCCchhHHHHHHHH
Confidence            1111    223334455566677653 221 1111                14678999986311      122344444


Q ss_pred             c-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH---HHHHHHHH
Q 009523          467 L-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL---KADVLQAL  529 (532)
Q Consensus       467 L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl---i~dL~~AL  529 (532)
                      + +..++.++.|..+.    .                 -.++++||+++..+.+++   ++.|.+++
T Consensus       391 ll~~~gV~v~pGs~F~----~-----------------~~~g~~Ri~fa~~~~~~l~~al~rl~~~l  436 (496)
T PLN02376        391 IIDKVKLNVSPGSSFR----C-----------------TEPGWFRICFANMDDDTLHVALGRIQDFV  436 (496)
T ss_pred             HHHcCCEEEeCccccC----C-----------------CCCCEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence            3 33578888875431    0                 025799999996343444   44444444

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.87  E-value=1e-19  Score=188.97  Aligned_cols=288  Identities=17%  Similarity=0.166  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      +..+.+++.+++++|.+    ..+++++|++++..++.+++.+||++++..+.+.+..  +...++..|.++..++.   
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence            67889999999999974    2446789999999999999988888766655544421  22345667888777753   


Q ss_pred             --CCHHHHHHhhcCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccc
Q 009523          274 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       274 --~dle~Le~al~~~-~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~  349 (532)
                        .|+++++++++++ ++++|++.+++|++|.+.|+++|.++|+++|+++|+|++++.+ ...+....++|+++.|++|+
T Consensus       109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~  188 (355)
T TIGR03301       109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC  188 (355)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence              2789999998642 4678888889999999999999999999999999999986543 23344456899999999999


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHHHHh---------------h--hcCCCccHHHHHHHHHhHHH------HHHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIRNLH---------------H--VLGGALNPNAAYLIIRGMKT------LHLRVQQQNS  406 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~~~~---------------~--~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~  406 (532)
                      ++|+.+  .|++++++++++.++...               .  ....+.+....+.+...++.      +..+.++..+
T Consensus       189 l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  266 (355)
T TIGR03301       189 LEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRR  266 (355)
T ss_pred             cccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            865432  489999998887765210               0  01112333333333333332      3445556667


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCccccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      +++.+.+.|+++ ++. +..|.  .           ...+.+++|.++.. ......+.+.|...++.++.|+..     
T Consensus       267 ~~~~~~~~L~~~-g~~-~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~-----  326 (355)
T TIGR03301       267 NRELLVDGLRAL-GFQ-PLLPE--R-----------WQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLT-----  326 (355)
T ss_pred             HHHHHHHHHHHc-CCe-eecCC--C-----------CCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccc-----
Confidence            788888888775 333 22221  0           01244678888742 123446666666556666554210     


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                         ..+.|||++.....++.++.+.++|++
T Consensus       327 -------------------~~~~iRis~~~~~~~~~i~~~~~~l~~  353 (355)
T TIGR03301       327 -------------------LADTFRIGTIGEIDAADIERLLEAIKD  353 (355)
T ss_pred             -------------------cccEEEEecCCCCCHHHHHHHHHHHHh
Confidence                               126899998654445555666655543

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.87  E-value=4.7e-20  Score=198.41  Aligned_cols=284  Identities=15%  Similarity=0.161  Sum_probs=180.8

Q ss_pred             hHHHHHHHHHhhhC--------C-CcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          202 TTVVVEEKMSALEG--------A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       202 ~~~~Le~~lA~l~g--------a-~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ....|++++|++++        . ++.|++++| ++|+.+++.+++.|||.|+++.|.|++....+   ..+.|++++.+
T Consensus        96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~---~~~~g~~vv~v  172 (447)
T PLN02607         96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL---RWRTGVKIVPI  172 (447)
T ss_pred             chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH---HhcCCcEEEEE
Confidence            35678888888764        1 233555555 59999999999999999999999998854322   12457777766


Q ss_pred             CC-------CCHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----c
Q 009523          272 DP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----Q  332 (532)
Q Consensus       272 d~-------~dle~Le~al~~-----~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~  332 (532)
                      +.       .|++++++++++     .++|+|++++|+||||.+++   +++|.++|+++|+++|+||+|+....    +
T Consensus       173 ~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f  252 (447)
T PLN02607        173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEF  252 (447)
T ss_pred             eCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence            43       267888888753     36899999999999999998   66888889999999999999864221    1


Q ss_pred             -cccc----------cCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----
Q 009523          333 -KALS----------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----  396 (532)
Q Consensus       333 -~~l~----------~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----  396 (532)
                       ..+.          ....+++.|+||.||.+| .+.|++++ ++++++.++.... ++. .+.....++...++.    
T Consensus       253 ~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~~~-~~~-~s~~~q~~~~~~L~d~~~~  329 (447)
T PLN02607        253 VSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSS-FTL-VSSQTQHLLASMLSDEEFT  329 (447)
T ss_pred             ccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHHHHHhh-cCC-CCHHHHHHHHHHhCCchhH
Confidence             1110          122478899999998666 56788887 6667676665432 222 233333333333321    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-----HHHHHHHHHc-
Q 009523          397 ---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-----TATIKFIDAL-  467 (532)
Q Consensus       397 ---l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-----~~~~~~l~~L-  467 (532)
                         +....++..++.+.+.+.|+++ ++. +    .+            ...|.++|+.++...     +...++.+.+ 
T Consensus       330 ~~~l~~~r~~l~~~~~~~~~~L~~~-gi~-~----~~------------~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll  391 (447)
T PLN02607        330 ENYIRTNRERLRKRYEMIVQGLRRA-GIE-C----LK------------GNAGLFCWMNLSPLLETPTREGELALWDSIL  391 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCC-c----cc------------CCeeEEEEEEchHhhcCCCchhHHHHHHHHH
Confidence               2222334445666677788764 232 1    11            114678899986311     2223444443 


Q ss_pred             CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009523          468 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH  530 (532)
Q Consensus       468 ~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~  530 (532)
                      +..++.+..|..+.    .                 ..++++||+++..+.   ++.++.|.++++
T Consensus       392 ~~~gV~v~pG~~f~----~-----------------~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~  436 (447)
T PLN02607        392 REVKLNISPGSSCH----C-----------------SEPGWFRVCFANMSEDTLEVALKRIHRFMD  436 (447)
T ss_pred             HhCCEEEcCccccC----C-----------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            34577777775421    0                 136899999996333   444555555554

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.87  E-value=4.8e-20  Score=196.37  Aligned_cols=256  Identities=12%  Similarity=0.100  Sum_probs=155.7

Q ss_pred             CchhHHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE---
Q 009523          199 GNPTTVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT---  267 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~------ga-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~---  267 (532)
                      +.+....|++++|+++      +. ++.|++++|+ +++..+ ..++.+||+|++++|+|......    ++..|.+   
T Consensus        74 ~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~----~~~~g~~~~~  148 (409)
T PRK07590         74 PEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVDT----NVMAGRTGEA  148 (409)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHHH----HHHcCCcccc
Confidence            4455678899999875      22 3455555555 888875 45678999999999999886543    3344543   


Q ss_pred             --------EEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCcc----
Q 009523          268 --------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       268 --------v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~----  332 (532)
                              +..++.+.-+.+...+...++|+|++++|+||||.+++.   ++|+++|+++|++||+||+|......    
T Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~  228 (409)
T PRK07590        149 NEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLP  228 (409)
T ss_pred             cccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCC
Confidence                    555554211112212222369999999999999999984   56778889999999999997643211    


Q ss_pred             ccc-cc----CCcEEEECCccccCCCCCcEEEEEEeChHHHHHH------------HHHhhhcCCCccHHHHHHHHHhH-
Q 009523          333 KAL-SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI------------RNLHHVLGGALNPNAAYLIIRGM-  394 (532)
Q Consensus       333 ~~l-~~----gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l------------~~~~~~~G~~~~~~~a~l~l~~l-  394 (532)
                      .++ ..    ...+++.|+||.+|.+| .+.||+++++++++.+            ...........+...+.++...+ 
T Consensus       229 ~~~~~~~~~~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~  307 (409)
T PRK07590        229 HSIYEIEGARECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYS  307 (409)
T ss_pred             cchhhCCCcccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhc
Confidence            111 11    13478899999997555 5689999999888632            11111111223444433333222 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CC
Q 009523          395 ----KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KI  469 (532)
Q Consensus       395 ----~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~  469 (532)
                          +.+....+...++.+.+.+.|+++ ++. +..|                ..|.++|+.++.. .....|...+ +.
T Consensus       308 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~~----------------~g~~f~wi~~~~~-~~~~~~~~~l~~~  368 (409)
T PRK07590        308 PEGKAQIKELIDYYMENAKIIREGLESA-GFE-VYGG----------------VNAPYIWVKTPDG-MSSWDFFDKLLQE  368 (409)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------------CcceEEEEECCCC-CCHHHHHHHHHHH
Confidence                223333444556677788888875 222 2111                1356889999753 1223444443 33


Q ss_pred             CceeecCCCc
Q 009523          470 PYIAPSFGGC  479 (532)
Q Consensus       470 ~~i~vs~G~~  479 (532)
                      .++.+..|..
T Consensus       369 ~gv~v~pg~~  378 (409)
T PRK07590        369 ANVVGTPGSG  378 (409)
T ss_pred             CCEEEeChhH
Confidence            4666666643

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.8e-20  Score=182.71  Aligned_cols=312  Identities=18%  Similarity=0.231  Sum_probs=223.4

Q ss_pred             ccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-CCCEEEEcC
Q 009523          169 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTT  247 (532)
Q Consensus       169 ~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~-~Gd~VIv~~  247 (532)
                      .+|.|+..++.++.++..+...+.-.|+  -+|+..+||+.+|+++|.|..+|++||+.++.++++..+. +|.+||+.+
T Consensus        26 LRSDTvT~PTdeMr~am~eA~vgDdVyG--eD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd  103 (384)
T KOG1368|consen   26 LRSDTVTVPTDEMRRAMAEASVGDDVYG--EDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGD  103 (384)
T ss_pred             cccccccCChHHHHHHHhhcccCccccc--CCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEecc
Confidence            5778888888887777777666666776  4689999999999999999999999999999998887764 899999999


Q ss_pred             CCCcchHHHHHHhcccCCcEEEEeCC-----CCHHHHHHhhcCC-------CeeEEEEeCCCCCCC-cccCHH---HHHH
Q 009523          248 DCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-------NVSLFFTESPTNPFL-RCVDVK---LVSD  311 (532)
Q Consensus       248 ~~y~~t~~~~~~~l~~~Gv~v~~vd~-----~dle~Le~al~~~-------~tklV~lesP~NptG-~v~dl~---~I~~  311 (532)
                      ..|--.++.- .+....|+.++.+..     .|++++|++++..       .|++|.+|+-+|.+| .+.|++   +|.+
T Consensus       104 ~~HI~~~E~g-g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~  182 (384)
T KOG1368|consen  104 RAHIHRYEQG-GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA  182 (384)
T ss_pred             chheeehhcc-ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence            8875433211 112223666665532     2799999999743       489999999998777 999976   6777


Q ss_pred             HHHhCCCEEEEECC--C----CCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccH-
Q 009523          312 LCHKKGAIVCIDGT--F----ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP-  384 (532)
Q Consensus       312 la~~~gi~lIvDet--~----a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~-  384 (532)
                      +|+++|+.++.|.+  |    +.+++.+-+-.-+|-|...+||.+|.+   +|.+++|+++++++.+..+..+|+.+-. 
T Consensus       183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQs  259 (384)
T KOG1368|consen  183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQS  259 (384)
T ss_pred             HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHH
Confidence            89999999999998  2    234444444445677878899999987   5788999999999998888888776533 


Q ss_pred             -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHH
Q 009523          385 -NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKF  463 (532)
Q Consensus       385 -~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~  463 (532)
                       ..+.+++-++......+++-.+.+..|+++++..+.+ ++..|..+               .+|+.+.+....-.++.+
T Consensus       260 GvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i-~v~v~a~e---------------tNiv~~~l~q~~~~~~~l  323 (384)
T KOG1368|consen  260 GVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI-RVEVPAVE---------------TNIVNMVLCQARLTAEEL  323 (384)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccce-eeecchhh---------------cceeeeecccccCCHHHH
Confidence             3455555566554446667778899999999866555 45555433               357777775433445566


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      .+.++..++..-.|                           ....+|+.+...=+++-++.+..+|
T Consensus       324 ~~~~~k~gi~lm~~---------------------------~s~r~Rivlh~Qvt~~~ve~~~~~~  362 (384)
T KOG1368|consen  324 CKFLEKNGILLMGG---------------------------ASRRIRIVLHHQVTDEDVEYVKSVL  362 (384)
T ss_pred             HHHHHHCCeEEeec---------------------------cccceEEEEEEecCHHHHHHHHHHH
Confidence            66665444332211                           1234888888755555555555554

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.87  E-value=1.4e-19  Score=190.65  Aligned_cols=257  Identities=14%  Similarity=0.092  Sum_probs=184.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      .+..+++++.+++++|.+++++++||++|+.+++.++ +++||+|+++.++|.++...    +...|+++++++.     
T Consensus        30 ~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~----~~~~G~~~v~~d~d~~~~  105 (375)
T PRK11706         30 GGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANA----FVLRGAKIVFVDIRPDTM  105 (375)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCCcC
Confidence            4678999999999999999999999999998887766 78999999999999987643    3456888888864     


Q ss_pred             -CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc--ccccccCCcEEEECCc--c
Q 009523          274 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSAT--K  348 (532)
Q Consensus       274 -~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~--~~~l~~gaDivv~S~s--K  348 (532)
                       .|++++++++++ ++++|++.   |++|...|+++|.++|+++|+++|+|++++.+..  ..+.....|+.++|++  |
T Consensus       106 ~~d~~~le~~i~~-~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K  181 (375)
T PRK11706        106 NIDETLIEAAITP-KTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETK  181 (375)
T ss_pred             CcCHHHHHHhcCC-CCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCc
Confidence             368999999987 79999974   5789999999999999999999999999875532  2233333588888877  9


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHhhh-------------------cC--CCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLHHV-------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNST  407 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~~~-------------------~G--~~~~~~~a~l~l~~l~tl~~r~~~~~~~  407 (532)
                      .++.+.  .|++++.++++.++++..+..                   .|  ..++...+...+..++.++...++..++
T Consensus       182 ~l~~g~--gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~  259 (375)
T PRK11706        182 NYTAGE--GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL  259 (375)
T ss_pred             cccccC--CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            997642  244555567888777654421                   12  1234556666777788888888888888


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      ++.+.+.|.+.+....+..|..+...         .....++++.++.+ .....+++.|...++.++.
T Consensus       260 ~~~~~~~L~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~r~~l~~~L~~~gI~~~~  318 (375)
T PRK11706        260 WQRYYDALAPLAEAGRIELPSIPDDC---------KHNAHMFYIKLRDL-EDRSALINFLKEAGIMAVF  318 (375)
T ss_pred             HHHHHHHhcCCCcCCeeecCCCCCCC---------ceeeEEEEEEECCc-CCHHHHHHHHHHCCCCccc
Confidence            88888888876532222223221100         00133566777532 3455677777666766554

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.87  E-value=9.6e-20  Score=193.63  Aligned_cols=170  Identities=16%  Similarity=0.184  Sum_probs=139.9

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          200 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ....+++++.+++++|.+   ..+++++|++++..++..++++||+|+++++.|.+..  +...+++.|++++.++.   
T Consensus        41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~  118 (401)
T PLN02409         41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWG  118 (401)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCC
Confidence            356778889999999873   3577778889999999999999999999998887643  33556778888888754   


Q ss_pred             --CCHHHHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHH--HHhCCCEEEEECCCCCC-CcccccccCCcEEEEC
Q 009523          274 --ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDL--CHKKGAIVCIDGTFATP-LNQKALSLGADLVLHS  345 (532)
Q Consensus       274 --~dle~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~l--a~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S  345 (532)
                        .|+++|++++++   +++++|++.+++||||.+.|+++|.++  |+++|+++|+|++++.+ .+.+..++|+|+++.|
T Consensus       119 ~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s  198 (401)
T PLN02409        119 QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTG  198 (401)
T ss_pred             CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEc
Confidence              368999999975   268999999999999999999999999  99999999999998754 3345556799999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHH
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRN  373 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~  373 (532)
                      .+|+++++.  ..|+++.++++++++..
T Consensus       199 ~~K~l~~P~--G~G~l~~~~~~~~~~~~  224 (401)
T PLN02409        199 SQKALSLPT--GLGIVCASPKALEASKT  224 (401)
T ss_pred             CccccCcCC--CcceeEECHHHHHHHhc
Confidence            999997654  27899999888877653

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.87  E-value=1.1e-19  Score=193.08  Aligned_cols=280  Identities=14%  Similarity=0.129  Sum_probs=169.0

Q ss_pred             CchhHHHHHHHHHhhh---CC-CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc-------
Q 009523          199 GNPTTVVVEEKMSALE---GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI-------  266 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~---ga-~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv-------  266 (532)
                      +.+....|++++|+++   +. .+.|++++|+ +++..+ ..++.+||+|++++|+|.....    .++..|+       
T Consensus        73 p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~~~~  147 (402)
T TIGR03542        73 PEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVD----SNVMAGRAGVLDDD  147 (402)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHH----HHHHcCCccccccc
Confidence            4456778999999875   33 2445555555 888875 5667899999999999987553    3444566       


Q ss_pred             ----EEEEeCCCCHHHHHHhh-cCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----cc
Q 009523          267 ----TATVIDPADMEGLEAAL-NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA  334 (532)
Q Consensus       267 ----~v~~vd~~dle~Le~al-~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~  334 (532)
                          ++..++.+..+.+...+ ...++++|++++|+||||.+++   +++|+++|+++|+++|+||+|......    .+
T Consensus       148 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~  227 (402)
T TIGR03542       148 GRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHS  227 (402)
T ss_pred             cccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcc
Confidence                77666543111111111 1126899999999999999998   678888899999999999997653211    11


Q ss_pred             c---cc--CCcEEEECCccccCCCCCcEEEEEEeChHHH--------HHHHHHhhhcCCCccHHHHHHHHHhH-----HH
Q 009523          335 L---SL--GADLVLHSATKFIGGHNDVLAGSISGSGKLV--------TQIRNLHHVLGGALNPNAAYLIIRGM-----KT  396 (532)
Q Consensus       335 l---~~--gaDivv~S~sK~lgg~gd~~gG~lv~~~~li--------~~l~~~~~~~G~~~~~~~a~l~l~~l-----~t  396 (532)
                      .   ..  ...+++.|+||.+|.+| ++.||++++++++        +.+...........+.....++...+     +.
T Consensus       228 ~~~~~~~~~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~  306 (402)
T TIGR03542       228 IFEIPGAKECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQP  306 (402)
T ss_pred             hhhCCCCcccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhH
Confidence            1   11  23477899999998666 5689999988876        22211111112223444433333322     22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeec
Q 009523          397 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPS  475 (532)
Q Consensus       397 l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs  475 (532)
                      +....+...++.+.+.+.|+++ ++ .+ +++               ..|.++|++++.. .....+.+.+ +..++.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~L~~~-~~-~~-~~~---------------~~~~f~~v~l~~~-~~~~~l~~~l~~~~gv~v~  367 (402)
T TIGR03542       307 ILEAISYYMENARILRKALEAA-GF-KV-YGG---------------EHAPYLWVKTPEG-ISSWDFFDFLLYQYHVVGT  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-Cc-ee-cCC---------------CceeEEEEECCCC-CCHHHHHHHHHHhCCEEEe
Confidence            2223344456667777888775 22 12 111               1366899999752 1223444443 23466666


Q ss_pred             CCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       476 ~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                      .|..+..                     ...+++||+++. +.+++.+.+
T Consensus       368 pg~~f~~---------------------~~~~~iRis~~~-~~~~l~~~l  395 (402)
T TIGR03542       368 PGSGFGP---------------------SGEGFVRFSAFG-KRENIVEAC  395 (402)
T ss_pred             CchhhCC---------------------CCCCEEEEEecC-CHHHHHHHH
Confidence            6644210                     024799999865 444433333

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.87  E-value=1.1e-19  Score=191.20  Aligned_cols=278  Identities=17%  Similarity=0.151  Sum_probs=179.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      .++..+++|++||+++|++.+++++||+.|+..++..+.++||.|++....|.++...+.. +.  +..+. ++..|+++
T Consensus        54 ~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~~--~~~~~-~~~~d~~~  129 (370)
T PRK05937         54 PSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-IS--GWHQS-FRHNDLDH  129 (370)
T ss_pred             ChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-cC--CceEE-ecCCCHHH
Confidence            5678999999999999999999999999888776666667889999989899887765532 22  44443 46678999


Q ss_pred             HHHhhcC-----CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccc----cccC---CcEEEEC
Q 009523          279 LEAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKA----LSLG---ADLVLHS  345 (532)
Q Consensus       279 Le~al~~-----~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~----l~~g---aDivv~S  345 (532)
                      |++.+++     .++++|++++++|++|.+.|+++|.++|+++|+++++|++++.+. ..+.    ..++   .++++.|
T Consensus       130 l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~t  209 (370)
T PRK05937        130 LESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVT  209 (370)
T ss_pred             HHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEe
Confidence            9998863     146788899999999999999999999999999999999987542 2221    1223   2367889


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR  423 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~  423 (532)
                      ++|.+|+.|   +| +++.++..+.+....  ..+....++.....+..+++.+....++..+..+.+.++|.+.  +..
T Consensus       210 lsK~~g~~G---~~-vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~--l~~  283 (370)
T PRK05937        210 YSKALGSMG---AA-LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQK--FSS  283 (370)
T ss_pred             chhhhhcCc---eE-EEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh--cCC
Confidence            999999865   44 445566555544211  1233335555544444555544321122222333344444331  100


Q ss_pred             EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcC
Q 009523          424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG  503 (532)
Q Consensus       424 V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~g  503 (532)
                       ..+                  +.+..|.+++.  ....+.+.|...++.++.      .+.|                 
T Consensus       284 -~~~------------------~~~~~i~~~~~--~~~~~~~~L~~~gi~v~~------~~~~-----------------  319 (370)
T PRK05937        284 -AAP------------------GCVQPIFLPGI--SEQELYSKLVETGIRVGV------VCFP-----------------  319 (370)
T ss_pred             -CCC------------------CCEEEEEeCCh--hHHHHHHHHHHCCeeEEe------eCCC-----------------
Confidence             001                  12334556542  234555566555655442      1122                 


Q ss_pred             CCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          504 IMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       504 i~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                       ..+.||+|++..++++.++.+.++|++
T Consensus       320 -~~~~iRis~~~~~t~edid~l~~~L~~  346 (370)
T PRK05937        320 -TGPFLRVNLHAFNTEDEVDILVSVLAT  346 (370)
T ss_pred             -CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence             135799999987777777777766653

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.87  E-value=1.6e-19  Score=191.03  Aligned_cols=286  Identities=16%  Similarity=0.112  Sum_probs=186.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHH-HHHHHHHHhccC--CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMS-ASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~-Ai~~al~all~~--Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-  274 (532)
                      +..+++++++++++|.+  +++++++|++ ++..++.+++.+  ||+|+++++.|+.+...+....+..|.+++.++.. 
T Consensus        64 ~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~  143 (398)
T cd00613          64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE  143 (398)
T ss_pred             HHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC
Confidence            45678899999999975  6667776764 444555555666  99999999999988766654445567888877643 


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH-HHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcc
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDV-KLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  348 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~NptG~v~dl-~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK  348 (532)
                          |++++++++.+ +|++|++++|+ ++|.+.|+ ++|+++|+++|+++|+|+++..+ ...++...++|+++.|+||
T Consensus       144 ~~~~d~~~l~~~i~~-~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K  221 (398)
T cd00613         144 GGTVDLEALKEEVSE-EVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQK  221 (398)
T ss_pred             CCCcCHHHHHHhcCC-CeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccc
Confidence                67999999987 69999999985 89999985 99999999999999999986542 3344556789999999999


Q ss_pred             ccCCC--CCcEEEEEEeChHHHHHHHHH-------------------------hhhcCC--Cc--cHHH---HHHHHHh-
Q 009523          349 FIGGH--NDVLAGSISGSGKLVTQIRNL-------------------------HHVLGG--AL--NPNA---AYLIIRG-  393 (532)
Q Consensus       349 ~lgg~--gd~~gG~lv~~~~li~~l~~~-------------------------~~~~G~--~~--~~~~---a~l~l~~-  393 (532)
                      ++++.  |...+|+++.++++++.+...                         +...+.  ..  .+..   ++..+.. 
T Consensus       222 ~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~  301 (398)
T cd00613         222 TGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL  301 (398)
T ss_pred             cCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh
Confidence            98431  123578999888777654110                         000010  01  1111   2211111 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCc
Q 009523          394 -MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPY  471 (532)
Q Consensus       394 -l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~  471 (532)
                       -+.+....++..++++++.+.|++.+...   .+.   .           ...+.++|.++.. ......+.+.|...+
T Consensus       302 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~---~-----------~~~~~v~~~~~~~~~~~~~~~~~~L~~~g  364 (398)
T cd00613         302 GPEGLKEIAERAHLNANYLAKRLKEVGGVL---PFN---G-----------PFFHEFVLRLPPLYGIRAEDLAKALIDGG  364 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCC---C-----------CeeEEEEEEcCCcchHHHHHHHHhhhhcC
Confidence             12233344566677778888887765432   111   0           1234567777631 134566776665444


Q ss_pred             eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       472 i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      +.+..       ..|                 ...+.||+|+...++++.++.+.++|
T Consensus       365 i~~~~-------~~~-----------------~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         365 FHAPT-------MYL-----------------PVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             ccccc-------ccc-----------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            32110       000                 02468999999999988888777654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.87  E-value=7.4e-20  Score=194.09  Aligned_cols=255  Identities=20%  Similarity=0.168  Sum_probs=165.8

Q ss_pred             CchhHHHHHH----HHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH-hcccCCcEEEEe-
Q 009523          199 GNPTTVVVEE----KMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI-  271 (532)
Q Consensus       199 ~~p~~~~Le~----~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~-~l~~~Gv~v~~v-  271 (532)
                      +.+....+++    .+++++|.+.. ++++||++|+..++.+++++||+|+++++.|++....... .++..|.++..+ 
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  138 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVP  138 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEec
Confidence            3444444444    57788998654 5667899999999999999999999999999875432111 144556554443 


Q ss_pred             -CCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCC
Q 009523          272 -DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGA  339 (532)
Q Consensus       272 -d~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~ga  339 (532)
                       +.+      |++++++++.+.++++|++++|+||  ...|+++|+++|+++|+++|+|+++..+..     ..++. ++
T Consensus       139 ~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~  215 (402)
T cd00378         139 YGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GA  215 (402)
T ss_pred             CCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CC
Confidence             222      8999999986447999999888765  567999999999999999999999643221     22334 78


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhc-CCCccHHHHHH----HHHhHH-HHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVL-GGALNPNAAYL----IIRGMK-TLHLRVQQQNSTALRMA  412 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~-G~~~~~~~a~l----~l~~l~-tl~~r~~~~~~~a~~la  412 (532)
                      |+++.|+||+++|+   .+|++++++ ++++.++...... .+.........    +....+ ....++++..++++.+.
T Consensus       216 dv~~~s~sK~l~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  292 (402)
T cd00378         216 DVVTTTTHKTLRGP---RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA  292 (402)
T ss_pred             cEEEeccccCCCCC---CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999655   378788776 8888876543211 11111111111    111222 34456677788889999


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      +.|.++ ++..+..|.                .+.++|+.++........+.+.|+..++.+..
T Consensus       293 ~~L~~~-g~~~~~~~~----------------~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~  339 (402)
T cd00378         293 EALKER-GFKVVSGGT----------------DNHLVLVDLRPKGITGKAAEDALEEAGITVNK  339 (402)
T ss_pred             HHHHhC-CCeEeecCC----------------CCeEEEEeCCccCCCHHHHHHHHHHcCcEEcC
Confidence            999876 443221121                35688888863111223444445555666554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK08354 putative aminotransferase; Provisional

Probab=99.87  E-value=9.8e-20  Score=187.01  Aligned_cols=160  Identities=21%  Similarity=0.224  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHh
Q 009523          203 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA  282 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~a  282 (532)
                      ...|+++++++.|. +.++++++++|+..++. ++.+||+|++++|+|....    ..++..|.++..++ .|++.|+++
T Consensus        42 ~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~-~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~-~d~~~l~~~  114 (311)
T PRK08354         42 YEWLEEEFSKLFGE-PIVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYE----RVARFFAARIIKGP-NDPEKLEEL  114 (311)
T ss_pred             hHHHHHHHHHHHCC-CEEECCCHHHHHHHHHH-hhCCCCeEEEeCCCcHHHH----HHHHHcCCEEeecC-CCHHHHHHh
Confidence            57799999999984 45555555599887775 4458999999999998754    34556788887654 578999888


Q ss_pred             hcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCcc-cccccCCcEEEECCccccCCCCCcEE
Q 009523          283 LNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATKFIGGHNDVLA  358 (532)
Q Consensus       283 l~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~-~~l~~gaDivv~S~sK~lgg~gd~~g  358 (532)
                      +++  ++++++++|+||||.+.+.   ++|+++|+++|+++|+||+|...... ........+++.|+||.++-+| .+.
T Consensus       115 ~~~--~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~G-lRi  191 (311)
T PRK08354        115 VER--NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPG-IRV  191 (311)
T ss_pred             hcC--CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcc-cee
Confidence            763  6789999999999999985   56677788899999999998664321 1122334689999999998665 467


Q ss_pred             EEEEeChHHHHHHHHHh
Q 009523          359 GSISGSGKLVTQIRNLH  375 (532)
Q Consensus       359 G~lv~~~~li~~l~~~~  375 (532)
                      |++++   +.+.++...
T Consensus       192 G~~v~---~~~~l~~~~  205 (311)
T PRK08354        192 GYVKG---FEEAFRSVR  205 (311)
T ss_pred             eeeee---hHHHHHHcC
Confidence            88887   455555544

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.86  E-value=4e-20  Score=194.03  Aligned_cols=304  Identities=19%  Similarity=0.219  Sum_probs=207.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .+.+++||+++++++|.+.++.++||+.|+.+++.++ +++||+|+++..+|.++...    +...|.+++++|.+    
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~a----i~~~G~~pv~~Di~~~~~   99 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASA----ILWAGAEPVFVDIDPETL   99 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHH----HHHTT-EEEEE-BETTTS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHH----HHHhccEEEEEeccCCcC
Confidence            5889999999999999999999999999999999998 68999999999999987643    44569999999854    


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc--cccCCcEEEECC--cc
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA--LSLGADLVLHSA--TK  348 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~--l~~gaDivv~S~--sK  348 (532)
                        |++++++++++ +|++|++   .+..|...|+++|.++|+++|++||.|.+++.+...+.  ...-.|+.++||  +|
T Consensus       100 ~id~~~~~~~i~~-~t~ai~~---~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K  175 (363)
T PF01041_consen  100 NIDPEALEKAITP-KTKAILV---VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTK  175 (363)
T ss_dssp             SB-HHHHHHHHHT-TEEEEEE---E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTS
T ss_pred             CcCHHHHHHHhcc-CccEEEE---ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCC
Confidence              89999999998 7999998   45569999999999999999999999999876543332  222349999998  59


Q ss_pred             ccCCCCCcEEEEEEeCh-HHHHHHHHHhhh-----------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR  410 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~-~li~~l~~~~~~-----------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~  410 (532)
                      .+..+.   ||+++.++ ++.++++.++..                 +...++.+.+.+++..|+.++.++++..++++.
T Consensus       176 ~i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~  252 (363)
T PF01041_consen  176 IITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR  252 (363)
T ss_dssp             SS-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            986554   78888864 666777654321                 123477888999999999999999999999999


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|.+.+.+.....+.-...           .....+.+.+++.. .....+++.|+..++.+.......+..+|...
T Consensus       253 y~~~L~~~~~~~~~~~~~~~~~-----------~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~  321 (363)
T PF01041_consen  253 YREALAGIPGIKPPPIPDGAER-----------SSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYR  321 (363)
T ss_dssp             HHHHHTTGTTEEEEGCGTTTEE-----------BCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGT
T ss_pred             HHHHHhcCCCcccccccccccc-----------cccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHH
Confidence            9999999888765544432110           01224556666421 13556777777667777654322333333321


Q ss_pred             ccc-----CCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          490 SYW-----DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       490 s~~-----~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      .+.     .+|..+.    +.+..|-|-+...-.++.++.+.+++
T Consensus       322 ~~~~~~~~~~P~ae~----l~~r~l~LP~~~~lt~edv~~I~~~i  362 (363)
T PF01041_consen  322 SYPYYAPGDLPNAER----LSQRLLSLPIHPRLTEEDVDYIAEAI  362 (363)
T ss_dssp             TGEEEETSSSHHHHH----HHHHEEEEEHSTTSCHHHHHHHHHHH
T ss_pred             hcCccccCCCHHHHH----HHhCeEECcCCCCCCHHHHHHHhhcc
Confidence            111     1222221    23456777776655566666666665

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=1.2e-19  Score=192.36  Aligned_cols=289  Identities=14%  Similarity=0.154  Sum_probs=192.0

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHh--------
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETV--------  260 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~--------  260 (532)
                      +...+|.++...+|+++|+++.+.   +++++++||++|+..+++.+..+| ++|+..++.|++........        
T Consensus        77 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~  156 (398)
T PRK03244         77 HVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRA  156 (398)
T ss_pred             CccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCccccc
Confidence            334567888889999999999875   367888999999999998776676 46777777888753221111        


Q ss_pred             -cccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------
Q 009523          261 -LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------  329 (532)
Q Consensus       261 -l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------  329 (532)
                       +...+..+..++..|++++++++++ ++++|++|+++||+|.+.|    +++|.++|++||+++|+||++...      
T Consensus       157 ~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~  235 (398)
T PRK03244        157 PFEPLPGGVEHVPYGDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAW  235 (398)
T ss_pred             CCCCCCCCceEeCCCCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchH
Confidence             1112334556666789999999876 7999999999999999987    889999999999999999997531      


Q ss_pred             CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHH
Q 009523          330 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  407 (532)
Q Consensus       330 ~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~  407 (532)
                      +.........|++  +++|.++++  ...|++++++++++.+...........++..+..+...++.+.  ...++..+.
T Consensus       236 ~~~~~~~~~pDi~--t~sK~l~~G--~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~  311 (398)
T PRK03244        236 FAHQHDGVTPDVV--TLAKGLGGG--LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERL  311 (398)
T ss_pred             HhhhhhCCCCCEE--EEchhhhCC--cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            1112223346776  578999953  4578888888887776542222222346666666666665432  233444455


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      .+++.+.|++..      +|..          ...++.|.+++++++.  .....+.+.+...++-++..          
T Consensus       312 ~~~l~~~L~~~~------~~~~----------~~v~g~g~~~~i~~~~--~~~~~~~~~l~~~Gv~~~~~----------  363 (398)
T PRK03244        312 GEQLRAGIEALG------HPLV----------DHVRGRGLLLGIVLTA--PVAKAVEAAAREAGFLVNAV----------  363 (398)
T ss_pred             HHHHHHHHHhcC------CCce----------eeEeeccEEEEEEEec--cHHHHHHHHHHHCCeEEeec----------
Confidence            666677776521      1211          0113468899999964  24556666665555443221          


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                       ..+.|||++..    ++.+.+++.|++++..
T Consensus       364 -----------------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        364 -----------------APDVIRLAPPLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             -----------------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence                             13679999776    4556666666666653

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.86  E-value=2.4e-19  Score=191.19  Aligned_cols=280  Identities=15%  Similarity=0.142  Sum_probs=199.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------------cCCCEEEEcCCCCcchHHHHHHhcccC-C
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------------PAGGHIVTTTDCYRKTRIFIETVLPKM-G  265 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all--------------~~Gd~VIv~~~~y~~t~~~~~~~l~~~-G  265 (532)
                      +..++||++||+++|.+++++++||..|+..++.++.              ..+|.|++....|.+....++ +.+.. +
T Consensus       147 ~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~~~~  225 (476)
T PLN02955        147 TYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAERQGN  225 (476)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccccCC
Confidence            4577899999999999999999999999999888772              456788888888988765553 22222 5


Q ss_pred             cEEEEeCCCCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc-------c--
Q 009523          266 ITATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------A--  334 (532)
Q Consensus       266 v~v~~vd~~dle~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~-------~--  334 (532)
                      .++..++.+|+++|++.++..  +.++|++|...++.|.+.|+++|.++|++||+++|+||+++.+..-.       .  
T Consensus       226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g  305 (476)
T PLN02955        226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFN  305 (476)
T ss_pred             ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhC
Confidence            788888999999999988532  46799999999999999999999999999999999999977543211       1  


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHH
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTAL  409 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~  409 (532)
                      +....|+++.|++|.+|..    ||++++++++++.++....  .+++.++|..+..++.+++.+   ..+.++..+|.+
T Consensus       306 ~~~di~ii~~TLsKA~G~~----GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~  381 (476)
T PLN02955        306 CEADVDLCVGTLSKAAGCH----GGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVK  381 (476)
T ss_pred             CCCCCcEEEEeCccchhcc----CceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1124689999999999855    6899999988888875433  345555555555555555443   234445555555


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.+.+            +++.             ...++.+.+. +...+..+.+.|...|+.++.      +..|+. 
T Consensus       382 ~fr~~~------------G~~~-------------~sPI~pI~ig-~~~~a~~~~~~L~~~Gi~v~~------i~yPtV-  428 (476)
T PLN02955        382 EFKALS------------GVDI-------------SSPIISLVVG-NQEKALKASRYLLKSGFHVMA------IRPPTV-  428 (476)
T ss_pred             HHHHhc------------CCCC-------------CCCEEEEEeC-CHHHHHHHHHHHHHCCCEEEE------ECCCCC-
Confidence            544421            1110             1357888774 456666777777666665543      233432 


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                           |        .....+||++...++++.|+.+.++|..
T Consensus       429 -----P--------~g~~rLRi~lsA~Ht~edId~lv~~L~~  457 (476)
T PLN02955        429 -----P--------PNSCRLRVTLSAAHTTEDVKKLITALSS  457 (476)
T ss_pred             -----C--------CCCceEEEeeCCCCCHHHHHHHHHHHHH
Confidence                 1        1235799999988877777777777653

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.86  E-value=1.9e-19  Score=188.49  Aligned_cols=274  Identities=14%  Similarity=0.067  Sum_probs=181.4

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhcc----CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          203 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~----~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      .+++++++++++|.+  ..+++++|++++..++.++..    +||+|+++++.|.+..    ..++..|++++.++.   
T Consensus        61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~~  136 (371)
T PRK13520         61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDDD  136 (371)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCCC
Confidence            468999999999974  467888888999888876643    5799999999987633    344566888888764   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc--------ccccccCCcEEE
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--------QKALSLGADLVL  343 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~--------~~~l~~gaDivv  343 (532)
                        .|+++|++++++ ++++|++..++|++|.+.|+++|.++|+++|+++++|++|+.+..        .+....++|.+.
T Consensus       137 ~~~d~~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~  215 (371)
T PRK13520        137 YRVDVKAVEDLIDD-NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT  215 (371)
T ss_pred             CcCCHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence              389999999987 577777778899999999999999999999999999999864321        111134789999


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--------cCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHH
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------LGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALR  410 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--------~G~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~  410 (532)
                      .|.+|+..++. ..|++++.++++++.+......        .+++.++..+..+...++     .+..+.++..+++++
T Consensus       216 ~s~~K~~~a~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~  294 (371)
T PRK13520        216 IDPHKMGLAPI-PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW  294 (371)
T ss_pred             ECCccccCccC-CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHH
Confidence            99999865432 2345555666677665421111        011122222222223332     233456677788888


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|++. ++..+..|                 ..+++.|.++.    ...+.+.|...++.++.+.            
T Consensus       295 l~~~L~~~-g~~~~~~~-----------------~~~~v~~~~~~----~~~v~~~L~~~gi~v~~~~------------  340 (371)
T PRK13520        295 LAEELKER-GFEPVIEP-----------------VLNIVAFDDPN----PDEVREKLRERGWRVSVTR------------  340 (371)
T ss_pred             HHHHHHhC-CCEEecCC-----------------CceEEEEecCC----HHHHHHHHHHCCceeccCC------------
Confidence            88888875 44322211                 23578888763    2344444443355444321            


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                    .++.||+|++..++++.++.+.++|+
T Consensus       341 --------------~~~~iRis~~~~~t~edi~~~~~~l~  366 (371)
T PRK13520        341 --------------CPEALRIVCMPHVTREHIENFLEDLK  366 (371)
T ss_pred             --------------CCCEEEEEEECCCCHHHHHHHHHHHH
Confidence                          13579999987666666666666554

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.86  E-value=1.1e-19  Score=188.19  Aligned_cols=211  Identities=20%  Similarity=0.244  Sum_probs=171.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .|.+.++|+++|++.|...++.++||+.|+.++++++ +.|||+||++..+|.+|.+.+    -..|.+++++|.+    
T Consensus        33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i----~~~Ga~PVFvDid~~T~  108 (374)
T COG0399          33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAV----LLVGAKPVFVDIDPDTL  108 (374)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHH----HHcCCeEEEEecCCccc
Confidence            5788999999999999999999999999999999966 699999999999999887543    3458889998865    


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEEEECC--cc
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK  348 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDivv~S~--sK  348 (532)
                        |++.||++|++ +||+|+.   -+-.|...|+++|.++|++||++||+|.+++.+...+....|  .|+.++||  +|
T Consensus       109 nid~~~ie~aIt~-~tKAIip---Vhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K  184 (374)
T COG0399         109 NIDPDLIEAAITP-RTKAIIP---VHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATK  184 (374)
T ss_pred             CCCHHHHHHHccc-CCeEEEE---ehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCC
Confidence              89999999998 6999986   445699999999999999999999999997766443333333  48888887  68


Q ss_pred             ccCCCCCcEEEEEEeCh-HHHHHHHHHhhh--------------c--CCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGSG-KLVTQIRNLHHV--------------L--GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  411 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~-~li~~l~~~~~~--------------~--G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~l  411 (532)
                      .+...-   ||+++.++ ++.++++.++..              .  ...++...+++.+..|+.++..+++..++++..
T Consensus       185 ~ittgE---GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y  261 (374)
T COG0399         185 NLTTGE---GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIY  261 (374)
T ss_pred             CccccC---ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887553   78888865 666766643321              1  123556677788889999999999999999999


Q ss_pred             HHHHHhCCCc
Q 009523          412 AKILEAHPKV  421 (532)
Q Consensus       412 a~~L~~~p~v  421 (532)
                      .+.|++.+.+
T Consensus       262 ~~~l~~~~~~  271 (374)
T COG0399         262 AEALKGLPGI  271 (374)
T ss_pred             HHHhhcCCCc
Confidence            9999987653

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.86  E-value=3.3e-19  Score=186.94  Aligned_cols=277  Identities=14%  Similarity=0.066  Sum_probs=186.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc------cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all------~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+++++.||+++|.+  ..+++++|++++..++.++.      ++||+|+++++.|.+..    ..++..|++++.++
T Consensus        59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~  134 (373)
T TIGR03812        59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYAP  134 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEEe
Confidence            45588999999999984  45788888888887776553      46799999999997633    34566788888876


Q ss_pred             C-----CCHHHHHHhhcCCCee-EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----------cccc
Q 009523          273 P-----ADMEGLEAALNNNNVS-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----------QKAL  335 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tk-lV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----------~~~l  335 (532)
                      .     .|++++++++++ ++. ++++ +|+||||.+.|+++|.++|+++|+++|+|++++.+..           .+..
T Consensus       135 ~~~~~~~d~~~l~~~l~~-~~~~vv~~-~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~  212 (373)
T TIGR03812       135 LDEDYTVDVKDVEDLIDD-NTIGIVGI-AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFS  212 (373)
T ss_pred             eCCCCCcCHHHHHHHHhh-CcEEEEEE-CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcccc
Confidence            4     379999999977 454 4555 5899999999999999999999999999999864321           1111


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhc-C-------CCccHHHHHHHHHhHHH-----HHHHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-G-------GALNPNAAYLIIRGMKT-----LHLRVQ  402 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~-G-------~~~~~~~a~l~l~~l~t-----l~~r~~  402 (532)
                      ..|+|.+..|.||+..++. ..||+++.++++++.++...... +       ++.+......+...++.     +..+.+
T Consensus       213 ~~~~d~~~~s~~K~~~~~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~  291 (373)
T TIGR03812       213 LPGVQSITIDPHKMGLSPI-PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA  291 (373)
T ss_pred             CCCCCEEEECccccCCCcC-CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence            2378999999999654332 13567777888877664211111 1       11222222222333332     344566


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      +..++++++.+.|++.+. ..+ ++.                ..+++.|.+++.    ..+.+.|...++.++.+.    
T Consensus       292 ~~~~~~~~l~~~L~~~g~-~~~-~~~----------------~~~~v~~~~~~~----~~v~~~L~~~gi~v~~~~----  345 (373)
T TIGR03812       292 ECMENTRYLVEELKKIGF-EPV-IEP----------------VLNIVAFEVDDP----EEVRKKLRDRGWYVSVTR----  345 (373)
T ss_pred             HHHHHHHHHHHHHHhCCC-eEE-cCC----------------CceEEEEEeCCH----HHHHHHHHHCCceeccCC----
Confidence            777888888888887642 222 121                245788887642    244555544454443210    


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                                            .++.||+|++..++++.++.+.++|++|
T Consensus       346 ----------------------~~~~iRis~~~~~t~edid~l~~~L~~~  373 (373)
T TIGR03812       346 ----------------------CPKALRIVVMPHVTREHIEEFLEDLKEI  373 (373)
T ss_pred             ----------------------CCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence                                  1468999999888888888888888764

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR01814 kynureninase kynureninase

Probab=99.86  E-value=3.2e-19  Score=189.87  Aligned_cols=281  Identities=14%  Similarity=0.122  Sum_probs=178.2

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCC---EEEEcCCCCcchHHHHHHhcccCCcEE----EEeCC
Q 009523          203 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGG---HIVTTTDCYRKTRIFIETVLPKMGITA----TVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd---~VIv~~~~y~~t~~~~~~~l~~~Gv~v----~~vd~  273 (532)
                      .+.+++ + +++|++  +.++++|++++++.++.+++++|+   .|+++..+|++....+...+++.|+++    ..++.
T Consensus        73 ~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  150 (406)
T TIGR01814        73 DESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP  150 (406)
T ss_pred             hhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc
Confidence            344444 5 788873  566777777999999998876653   688888999987665544556678776    34432


Q ss_pred             -----CCHHHHHHhhc--CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEEC
Q 009523          274 -----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  345 (532)
Q Consensus       274 -----~dle~Le~al~--~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S  345 (532)
                           .|++++++.++  ..+|++|++++++|.+|.++|+++|.++||++|+++++|++++.+. +++..++|+|+++.|
T Consensus       151 ~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s  230 (406)
T TIGR01814       151 REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWC  230 (406)
T ss_pred             CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEc
Confidence                 26788888774  1269999999999999999999999999999999999999987663 455557799999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHH-hh----------------------hcCCCccHHHHHHHHHhHHHH-----
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-HH----------------------VLGGALNPNAAYLIIRGMKTL-----  397 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~-~~----------------------~~G~~~~~~~a~l~l~~l~tl-----  397 (532)
                      .||+++++.+  +|+++.++. ...+... ..                      ...++.+....+.+..+++.+     
T Consensus       231 ~hK~l~g~pG--~~l~v~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~  307 (406)
T TIGR01814       231 TYKYLNAGPG--AGAFVHEKH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGM  307 (406)
T ss_pred             CccccCCCCC--eEEEEehhh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCH
Confidence            9999864421  454444433 2222110 00                      001233333444344455443     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC----CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          398 HLRVQQQNSTALRMAKILEAHP----KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       398 ~~r~~~~~~~a~~la~~L~~~p----~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                      ....++..+..+++.+.|++.+    ++. +..|.   .+         ...+++++|.++.+   ...+.+.|...++.
T Consensus       308 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~-i~~~~---~~---------~~r~~~v~~~~~~~---~~~~~~~L~~~gi~  371 (406)
T TIGR01814       308 EALRKKSLLLTDYLEELIKARCGGPPVLT-IITPR---DH---------AQRGCQLSLTHPVP---GKAVFQALIKRGVI  371 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCceE-EeCCC---Ch---------hhcCCeEEEEecCC---HHHHHHHHHHCCEE
Confidence            2223344455556666665532    232 22221   11         11367889988722   23444455444544


Q ss_pred             ecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHhh
Q 009523          474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVEDFEDLKADVLQALHA  531 (532)
Q Consensus       474 vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~ed~~dli~dL~~AL~~  531 (532)
                      +...                           .++.||+|+ +..++++.|+.+.++|++
T Consensus       372 v~~~---------------------------~~~~iRiS~~~~~nt~~did~l~~~l~~  403 (406)
T TIGR01814       372 GDKR---------------------------EPSVIRVAPVPLYNTFVDVYDAVNVLEE  403 (406)
T ss_pred             Eecc---------------------------CCCeEEEechhccCCHHHHHHHHHHHHH
Confidence            3210                           136899999 578777777888777764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.86  E-value=2.4e-19  Score=191.32  Aligned_cols=254  Identities=19%  Similarity=0.158  Sum_probs=167.8

Q ss_pred             chhHHHHHH----HHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH-hcccCCcEEEEeCC
Q 009523          200 NPTTVVVEE----KMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP  273 (532)
Q Consensus       200 ~p~~~~Le~----~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~-~l~~~Gv~v~~vd~  273 (532)
                      .+..+.+++    .+++++|.+.. ++++||++|+..++.+++++||+|+++.++|.+....... .+...|.++..++.
T Consensus        66 ~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  145 (416)
T PRK00011         66 CEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV  145 (416)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCc
Confidence            445555655    88999998655 6678999999999999999999999999999764321111 12334566666543


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCCcEE
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLV  342 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~gaDiv  342 (532)
                            .|+++++++++++++++|+++.++  +|...|+++|.++|+++|+++|+|++++.+..     ..+.. ++|++
T Consensus       146 ~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~  222 (416)
T PRK00011        146 DEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV  222 (416)
T ss_pred             CcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence                  378999999975468999986544  45678999999999999999999999654321     12334 78999


Q ss_pred             EECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhc--CCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~--G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~~la~~L  415 (532)
                      +.|+||+++|+   .||+++++ ++++++++......  +....+..+.+.....+    .+..++++..++++++.+.|
T Consensus       223 ~~S~~K~l~g~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L  299 (416)
T PRK00011        223 TTTTHKTLRGP---RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL  299 (416)
T ss_pred             EecCCcCCCCC---CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999655   37888885 68888877654321  11111122211111111    24566778889999999999


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      ++. ++. +. +.   .           ..++++++.+++.......+.+.|+..++.++.
T Consensus       300 ~~~-g~~-~~-~~---~-----------~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~  343 (416)
T PRK00011        300 AER-GFR-VV-SG---G-----------TDNHLVLVDLRSKGLTGKEAEAALEEANITVNK  343 (416)
T ss_pred             HhC-CCe-ee-ec---C-----------CCCeEEEEeCcccCCCHHHHHHHHHHcCcEEcc
Confidence            875 342 21 11   0           023578888753211234455556555666654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.85  E-value=3.9e-19  Score=179.36  Aligned_cols=263  Identities=20%  Similarity=0.218  Sum_probs=189.6

Q ss_pred             ccccccccCChHHHHHHhhcc-cCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcC
Q 009523          169 VNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT  247 (532)
Q Consensus       169 ~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~  247 (532)
                      ++|.++.=+..+.+++....+ .+.-.||  .+|..+++++++++++|.+.++|++||++|+.++|.+.++||+.||+..
T Consensus         4 f~SDn~~g~~~~m~eam~~a~~~~~~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~   81 (342)
T COG2008           4 FRSDNVAGPTPEMREALAAANAVGDDVYG--EDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHE   81 (342)
T ss_pred             cccCccCCCCHHHHHHHHhccccCCCCCC--CCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEec
Confidence            456677767777776666544 3333454  5799999999999999998899999999999999999999999999999


Q ss_pred             CCCcchHHHHHHhcccC--CcEEEEeCC----CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCH---HHHHHHH
Q 009523          248 DCYRKTRIFIETVLPKM--GITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDV---KLVSDLC  313 (532)
Q Consensus       248 ~~y~~t~~~~~~~l~~~--Gv~v~~vd~----~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl---~~I~~la  313 (532)
                      ..|-.+.+.-  ..+-+  +.++..++.    .++++|++.+++.     .+.++++++..|..|+++++   ++|.++|
T Consensus        82 ~aHi~~~E~G--a~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~  159 (342)
T COG2008          82 TAHIYTDECG--APEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVC  159 (342)
T ss_pred             cccceecccC--cHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHH
Confidence            8886543211  11112  234433442    2799999988642     36777777887788999985   5677789


Q ss_pred             HhCCCEEEEECC--C----CCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHH--
Q 009523          314 HKKGAIVCIDGT--F----ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN--  385 (532)
Q Consensus       314 ~~~gi~lIvDet--~----a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~--  385 (532)
                      |++|++|++|.+  +    +.......+..++|++..++||.++.+.   +.+++++.+++++++.++...|+.+...  
T Consensus       160 k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~  236 (342)
T COG2008         160 KEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKARF  236 (342)
T ss_pred             HHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhhH
Confidence            999999999999  1    1122334455689999999999998763   6677889999999998888888765432  


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          386 AAYLIIRGMKTLHLRVQQQNST--ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       386 ~a~l~l~~l~tl~~r~~~~~~~--a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      .+...+..++.-..++....+|  +++|++.|++.|+++ +..|.                -.+++-+.++.
T Consensus       237 laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~-~~~~~----------------~tN~vf~~l~~  291 (342)
T COG2008         237 LAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVK-LAFPV----------------ETNMVFVRLPE  291 (342)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCce-eccCC----------------cccEEEEECCh
Confidence            2333344455544455555566  899999999888774 33331                24688888874

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.85  E-value=6.1e-19  Score=187.17  Aligned_cols=253  Identities=17%  Similarity=0.183  Sum_probs=169.2

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------CC-CEEEEcCCCCcchHHHHHHhcc-----
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~---------~G-d~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      ..++...+|+++|+++.+.+.+++++||++|+..+++....         +| ++||+.+..|++.......+..     
T Consensus        79 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~  158 (396)
T PRK04073         79 FHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYK  158 (396)
T ss_pred             cCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence            45677889999999999888899999999999999886531         34 6788888888774321111110     


Q ss_pred             -cCC---cEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          263 -KMG---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       263 -~~G---v~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                       .++   ..+..++..|++++++++++ ++++|++|+|+||+|.+.|    +++|.++|+++|+++|+||++.....   
T Consensus       159 ~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~  237 (396)
T PRK04073        159 RGFGPMLPGIKKIPYGDLEALKAAITP-NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK  237 (396)
T ss_pred             cCCCCCCCCceEeCCCCHHHHHHhccc-CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH
Confidence             011   12345677789999999976 6999999999999999987    78999999999999999999764211   


Q ss_pred             ---ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHH
Q 009523          332 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  406 (532)
Q Consensus       332 ---~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~  406 (532)
                         ........|+++  ++|.+|+++ ...|++++++++++.+...........++..++.++..++.+.  ...++..+
T Consensus       238 ~~~~~~~~~~pdi~~--~sK~lg~gg-~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~  314 (396)
T PRK04073        238 LFACDWDNVTPDMYI--LGKALGGGV-FPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLE  314 (396)
T ss_pred             HHHhhhcCCCCCEEE--ecccccCCC-CcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence               122233467776  789998764 3468888999888877542221122246666666666666442  12234445


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                      ..+++.+.|++..      ++.+.          ..++.|.++.++++.   ....|.+.|...++.
T Consensus       315 ~~~~l~~~L~~l~------~~~i~----------~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~  362 (396)
T PRK04073        315 LGEYFKEQLKEID------NPMIK----------EVRGRGLFIGVELNE---PARPYCEALKEEGLL  362 (396)
T ss_pred             HHHHHHHHHHhhc------CCccc----------ceecceEEEEEEecc---hHHHHHHHHHHCCeE
Confidence            5666666666531      12111          113457889998863   234566666544543

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.85  E-value=1.2e-19  Score=185.30  Aligned_cols=221  Identities=19%  Similarity=0.237  Sum_probs=158.5

Q ss_pred             CCCCCC-CCch-hHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          192 SFEYGR-YGNP-TTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       192 ~~~Y~R-~~~p-~~~~Le~~lA~l~ga----~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      -+.|+| ||.| .+..|++++++++|.    ++.|++|.|. +++..++++++.+||+||+.+|.|......    ....
T Consensus        62 ~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~----~~ma  137 (420)
T KOG0257|consen   62 TNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQ----VVMA  137 (420)
T ss_pred             hccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhH----Hhhc
Confidence            456776 5554 567788999998774    3445555555 999999999999999999999999875533    3344


Q ss_pred             CcEEEEeCC-------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCC
Q 009523          265 GITATVIDP-------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       265 Gv~v~~vd~-------------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~  328 (532)
                      |...++++.             .|.++++.++++ +||+|++++||||||.+.+   +++|+++|++||+++|.||+|.-
T Consensus       138 G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~  216 (420)
T KOG0257|consen  138 GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEW  216 (420)
T ss_pred             CCcceeeccccccccccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHH
Confidence            555555542             289999999998 8999999999999999997   77899999999999999999643


Q ss_pred             CCc-------c--cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCC-CccHHHHH--HHHH-hH-
Q 009523          329 PLN-------Q--KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG-ALNPNAAY--LIIR-GM-  394 (532)
Q Consensus       329 ~~~-------~--~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~-~~~~~~a~--l~l~-~l-  394 (532)
                      .+.       +  .|-.....+-+.|++|++|-.|. ..||+++++.++..++..+....- +..+...+  .+.. ++ 
T Consensus       217 ~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGW-rlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~  295 (420)
T KOG0257|consen  217 LVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGW-RLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELA  295 (420)
T ss_pred             HhhCCCcceeeecCCchhheEEEeccccceeeeeee-eeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhh
Confidence            211       1  12222346889999999997764 578999988888877766554332 22232111  1111 11 


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          395 -------KTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       395 -------~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                             .......+...+++..|++.|++.
T Consensus       296 ~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  296 CLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   223335566678889999999886

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.85  E-value=1.8e-19  Score=186.85  Aligned_cols=267  Identities=15%  Similarity=0.108  Sum_probs=177.7

Q ss_pred             chhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc------------CC--CEEEEcCCCCcchHHHHHHhc
Q 009523          200 NPTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP------------AG--GHIVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~------------~G--d~VIv~~~~y~~t~~~~~~~l  261 (532)
                      ....+++.+.+++++|.+    +.+++++|++|+..++.++..            +|  +.|+++++.|.+.....    
T Consensus        37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~----  112 (345)
T cd06450          37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA----  112 (345)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH----
Confidence            334444556667777864    688889999999999887742            33  37888888888754332    


Q ss_pred             ccCCcEEEEeCC-----CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc
Q 009523          262 PKMGITATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN  331 (532)
Q Consensus       262 ~~~Gv~v~~vd~-----~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~  331 (532)
                      ...|.+++.++.     .|+++|++++++.     ++++|+++.|+||+|.+.|+++|+++|+++|+++++|++++.+..
T Consensus       113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~  192 (345)
T cd06450         113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLL  192 (345)
T ss_pred             HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHh
Confidence            334677776653     3799999998651     478999999999999999999999999999999999999875432


Q ss_pred             -ccccc------cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH--HHHHHHHH
Q 009523          332 -QKALS------LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--KTLHLRVQ  402 (532)
Q Consensus       332 -~~~l~------~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l--~tl~~r~~  402 (532)
                       .....      .++|.+..|+||+++++.  ..|+++.+                   ....+.+++.+  ..+..+++
T Consensus       193 ~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~  251 (345)
T cd06450         193 PFPEPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR-------------------ALKLWATLRRFGRDGYGEHID  251 (345)
T ss_pred             hChhhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHH
Confidence             11111      268999999999887653  24555433                   22223333222  33456667


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHHHHHHHcCCCceeecCCCc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      +..+.++++.+.|++.+++..+..|                 .++++.|.+++.   ......+.+.|...++.+..+  
T Consensus       252 ~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~--  312 (345)
T cd06450         252 RIVDLAKYLAELIRADPGFELLGEP-----------------NLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPA--  312 (345)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEecCC-----------------ceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEe--
Confidence            7778888999999888776332111                 246888888752   133455666665443211111  


Q ss_pred             ccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHhh
Q 009523          480 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALHA  531 (532)
Q Consensus       480 ~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~AL~~  531 (532)
                             ..             .+ .++.+|+|++.. +.++.++.+.++|++
T Consensus       313 -------~~-------------~~-~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         313 -------TT-------------LG-GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             -------eE-------------EC-CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence                   00             00 246899999976 367777778777765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN02231 alanine transaminase

Probab=99.85  E-value=1.3e-18  Score=190.61  Aligned_cols=216  Identities=15%  Similarity=0.170  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhcc-CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~-~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .....|++.||+++    |.    ++.++++++++|+..++..++. +||.|+++.|.|.....    .+...|.++..+
T Consensus       168 ~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~----~~~~~g~~~v~~  243 (534)
T PLN02231        168 QGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSA----SIALHGGTLVPY  243 (534)
T ss_pred             CCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHH----HHHHcCCEEEEE
Confidence            34567788888765    32    3455555556999999999984 89999999999987543    344556666665


Q ss_pred             CC-------CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc--c-
Q 009523          272 DP-------ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--K-  333 (532)
Q Consensus       272 d~-------~dle~Le~al~~~-----~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~--~-  333 (532)
                      +.       .|+++|++++++.     ++|+|++++|+||||.+++   +++|+++|+++|++||+||+|......  . 
T Consensus       244 ~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~  323 (534)
T PLN02231        244 YLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKK  323 (534)
T ss_pred             ecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence            32       2789999888541     5899999999999999997   567888899999999999997653221  0 


Q ss_pred             --cc-c----cC------CcEEEECCccccCC-CCCcEEEEEEe---ChHHHHHHHHHhhhcCCCccHHHHHHHHHhH--
Q 009523          334 --AL-S----LG------ADLVLHSATKFIGG-HNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--  394 (532)
Q Consensus       334 --~l-~----~g------aDivv~S~sK~lgg-~gd~~gG~lv~---~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l--  394 (532)
                        .+ .    .|      .-++++|+||.+.| .| .++||++.   ++++++.+.+.... ..+.+.....++...+  
T Consensus       324 ~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~~-~~~s~~~~Q~~~~~~l~~  401 (534)
T PLN02231        324 FHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVASV-NLCSNISGQILASLVMSP  401 (534)
T ss_pred             cccHHHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHhCC
Confidence              11 0    11      23778999997643 43 56898875   67888888765442 2222222222222222  


Q ss_pred             --------HH----HHHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          395 --------KT----LHLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       395 --------~t----l~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                              +.    .....+...++++.+.+.|++++++.
T Consensus       402 p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~  441 (534)
T PLN02231        402 PKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT  441 (534)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence                    11    11113445577778888888776653

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.84  E-value=6.9e-19  Score=201.81  Aligned_cols=325  Identities=15%  Similarity=0.081  Sum_probs=205.2

Q ss_pred             cccCCCCCCCCCchhHHHHHHHHHhhhCCC--c-E-EEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcc
Q 009523          188 KRRASFEYGRYGNPTTVVVEEKMSALEGAE--S-T-VIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       188 ~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~--~-~-i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      +.++.|..++......++.|+++|+++|++  + . ++++++++|+++++.++ +++||+||++...|.+...++ ..++
T Consensus        65 np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~  143 (805)
T PLN02724         65 NPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYAL  143 (805)
T ss_pred             CCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHH
Confidence            444445556666778899999999999972  3 3 44455669999998887 789999999999998876543 5566


Q ss_pred             cCCcEEEEeCCC-------------C--HHHHHHhhc---------CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--
Q 009523          263 KMGITATVIDPA-------------D--MEGLEAALN---------NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--  316 (532)
Q Consensus       263 ~~Gv~v~~vd~~-------------d--le~Le~al~---------~~~tklV~lesP~NptG~v~dl~~I~~la~~~--  316 (532)
                      +.|+++.+++.+             +  .++|++.++         ..++++|.+.+.+|.+|.++|++.|.++++..  
T Consensus       144 ~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~  223 (805)
T PLN02724        144 EKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHS  223 (805)
T ss_pred             HcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhccc
Confidence            779999887643             1  144655431         12578999999999999999999775555432  


Q ss_pred             ------CCEEEEECCCCCC-CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-------------
Q 009523          317 ------GAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------------  376 (532)
Q Consensus       317 ------gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-------------  376 (532)
                            ++++++|.+++.+ .+.+..++++|+++.|+||++|++.+  .|+++.++++.+.+.....             
T Consensus       224 ~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~  301 (805)
T PLN02724        224 NFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADID  301 (805)
T ss_pred             ccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccc
Confidence                  3689999997665 44566678999999999999994432  6888888777766543211             


Q ss_pred             -----------hcCCCccHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHhCC------CceEEeCCCCCCCch
Q 009523          377 -----------VLGGALNPNAAYLIIRGMKTLHL-----RVQQQNSTALRMAKILEAHP------KVKRVHYPGLKSHPE  434 (532)
Q Consensus       377 -----------~~G~~~~~~~a~l~l~~l~tl~~-----r~~~~~~~a~~la~~L~~~p------~v~~V~~Pgl~s~p~  434 (532)
                                 .-.++.+......+..+++.+..     ..++..+.++++.+.|.+.+      .| .++-|.-.. +.
T Consensus       302 ~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v-~iyg~~~~~-~~  379 (805)
T PLN02724        302 FVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVC-VLYGNHTFK-LE  379 (805)
T ss_pred             eeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEE-EEcCCCCCC-CC
Confidence                       01122333333333344544332     12233355666667777654      23 333231000 00


Q ss_pred             hhhHhhhcCCcccEEEEEEcCC------HHHHHHHHHHcCCCceeecCCCcccccccCccc-cccCCCHHHHH-------
Q 009523          435 HHIATQQMTGFGGVVSFEVDGD------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIM-SYWDLSQSERL-------  500 (532)
Q Consensus       435 ~~l~~~~~~g~G~~vsf~l~g~------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~-s~~~~~~~~~~-------  500 (532)
                             ....+++++|.+.+.      ...+..+.   ...+|.+..|..+.    |... .+-.+..++..       
T Consensus       380 -------~~~r~~ivsFnv~~~~~~~v~~~~v~~l~---~~~gI~vR~G~~Ca----~~~~~~~lg~~~~~l~~~~~~~~  445 (805)
T PLN02724        380 -------FHIQGPIVTFNLKRADGSWVGHREVEKLA---SLSGIQLRTGCFCN----PGACAKYLGLSHKDLQANFEAGH  445 (805)
T ss_pred             -------cccccCEEEEEEEcCCCCEeCHHHHHHHH---HhcCcEEeeccccC----chHHHHHcCCCHHHHHHHhhcCC
Confidence                   012478999999752      12234433   34578888886533    2211 11112221111       


Q ss_pred             --------hcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          501 --------KYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       501 --------~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                              ..+...|.||+|+|..++.+.++.|.++|++
T Consensus       446 ~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~  484 (805)
T PLN02724        446 VCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIIS  484 (805)
T ss_pred             ccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHH
Confidence                    0122358999999999988888888888864

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.84  E-value=1.4e-18  Score=182.72  Aligned_cols=286  Identities=14%  Similarity=0.131  Sum_probs=185.1

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---c----CCCEEEEcCCCCcchHHHHHHh-c-----
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETV-L-----  261 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all---~----~Gd~VIv~~~~y~~t~~~~~~~-l-----  261 (532)
                      ..+|.++...+|++++++++|.+++++++||++|+..+++.+.   .    +||+|++.++.|++........ .     
T Consensus        63 ~~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~  142 (379)
T TIGR00707        63 SNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQ  142 (379)
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhh
Confidence            3557789999999999999999999999999999998887552   2    3799999999998743222111 0     


Q ss_pred             ---ccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc-C---HHHHHHHHHhCCCEEEEECCCCCCCcc--
Q 009523          262 ---PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFATPLNQ--  332 (532)
Q Consensus       262 ---~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~-d---l~~I~~la~~~gi~lIvDet~a~~~~~--  332 (532)
                         .....++.+++.+|++++++.+++ ++++|++++++|++|... +   +++|.++|+++|+++|+||++......  
T Consensus       143 ~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~  221 (379)
T TIGR00707       143 KGFEPLVPGFSYAPYNDIESLKKAIDD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK  221 (379)
T ss_pred             ccCCCCCCCceeeCCCCHHHHHHHhhh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch
Confidence               111123444555689999999987 699999987777777643 3   789999999999999999997632111  


Q ss_pred             ----cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHH
Q 009523          333 ----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  406 (532)
Q Consensus       333 ----~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~  406 (532)
                          .......|++  +++|.+++ | .+.|++++++++++.+...........++..+..+...++.+.  ...++..+
T Consensus       222 ~~~~~~~~~~~d~~--t~sK~~~~-G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~  297 (379)
T TIGR00707       222 FFAYEHYGIEPDII--TLAKGLGG-G-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKE  297 (379)
T ss_pred             hhhHHhcCCCCCEE--EEcccccC-C-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                1112234655  58999993 3 4678999999888887653222222345666666555555332  23445556


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      +.+.+.+.|++...  ..   +..          ...+.|.+++++++.+   ...|.+.|...++.+..+         
T Consensus       298 ~~~~~~~~l~~~~~--~~---~~~----------~~~~~g~~~~~~~~~~---~~~~~~~l~~~Gv~v~~~---------  350 (379)
T TIGR00707       298 KGDYFKERLEELGK--NY---PNK----------EVRGKGLMLGIELEAP---CKDIVKKALEKGLLVNCA---------  350 (379)
T ss_pred             HHHHHHHHHHHHHh--hC---CCC----------ccccCceEEEEEecCc---HHHHHHHHHHCCcEEeeC---------
Confidence            66667776665311  11   110          0122477899998643   345666665556554431         


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                        ..+.|||++....+++.++.+.++|+
T Consensus       351 ------------------~~~~lRi~~~~~~t~~~i~~~~~~l~  376 (379)
T TIGR00707       351 ------------------GPKVLRFLPPLIITKEEIDEAVSALE  376 (379)
T ss_pred             ------------------CCCEEEEECCCcCCHHHHHHHHHHHH
Confidence                              13689999876444444455544444

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.84  E-value=2.3e-18  Score=183.08  Aligned_cols=288  Identities=19%  Similarity=0.163  Sum_probs=189.8

Q ss_pred             CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcc---------cCC
Q 009523          199 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---------KMG  265 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~---------~~G  265 (532)
                      .++...+|+++|+++.+  .+.+++++||++|+..++..+.  .++|+|++.++.|++..........         ...
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  156 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL  156 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            46788999999999998  5788999999999999998763  5789999999999985433222111         112


Q ss_pred             cEEEEeCCC-----------CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCC
Q 009523          266 ITATVIDPA-----------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       266 v~v~~vd~~-----------dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~  328 (532)
                      .++..++.+           |+++|++.+++  .++++|+++..+|++|.+.+    +++|.++|++||+++|+||++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g  236 (413)
T cd00610         157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG  236 (413)
T ss_pred             CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            345556655           78999998875  35889999888888899887    99999999999999999999764


Q ss_pred             CC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHH--HHHhhhcCCCccHHHHHHHHHhHHHHH--
Q 009523          329 PL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNPNAAYLIIRGMKTLH--  398 (532)
Q Consensus       329 ~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l--~~~~~~~G~~~~~~~a~l~l~~l~tl~--  398 (532)
                      ..      .........|++  |++|.+++ | ...|++++++++++.+  ...........++..+..+...++.+.  
T Consensus       237 ~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~  312 (413)
T cd00610         237 FGRTGKMFAFEHFGVEPDIV--TLGKGLGG-G-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE  312 (413)
T ss_pred             CCcCcchhhHhhcCCCCCeE--EEcccccC-c-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            21      111122334655  67899997 3 4578888898888876  222211222345555555555555443  


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HHHHHHHHHHcCCCc
Q 009523          399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKFIDALKIPY  471 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~~~~~~~l~~L~~~~  471 (532)
                      ...++..++.+++.+.|++....    ++. ..         ...+.|.++++.+...       ......|.+.|...+
T Consensus       313 ~~~~~~~~~~~~l~~~l~~~~~~----~~~-~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  378 (413)
T cd00610         313 GLLENAAELGEYLRERLRELAEK----HPL-VG---------DVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERG  378 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhh----CCc-EE---------EeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCC
Confidence            23445556666666666653210    010 00         0124578999998643       134566776666556


Q ss_pred             eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       472 i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +.+..++                           .+.+|+++.....++.++.+.++|++
T Consensus       379 v~v~~~~---------------------------~~~lR~~~~~~~t~~~i~~~~~~l~~  411 (413)
T cd00610         379 LLLRPSG---------------------------GNVIRLLPPLIITEEEIDEGLDALDE  411 (413)
T ss_pred             eEEeecC---------------------------CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence            5444321                           35799999887666555666655543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02368 alanine transaminase

Probab=99.84  E-value=9.2e-19  Score=186.16  Aligned_cols=221  Identities=14%  Similarity=0.162  Sum_probs=150.4

Q ss_pred             CCCCchh-HHHHHHHHHhhh----CC---CcEEEeCCH-HHHHHHHHHHhc-cCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNPT-TVVVEEKMSALE----GA---ESTVIMASG-MSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~----ga---~~~i~~sSG-~~Ai~~al~all-~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .+|+.+. ...|+++||+++    |.   ++.|++++| ++++..++.+++ ++||.|++++|+|.....    .+...|
T Consensus       101 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~----~~~~~g  176 (407)
T PLN02368        101 GAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSA----TISLLG  176 (407)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHH----HHHHcC
Confidence            3454433 457888888776    42   234555555 589999999987 799999999999998653    344567


Q ss_pred             cEEEEeCC-------CCHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCC
Q 009523          266 ITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  330 (532)
Q Consensus       266 v~v~~vd~-------~dle~Le~al~~-----~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~  330 (532)
                      .++..++.       .|+++|++++++     .++|++++++|+||||.+++   +++|+++|+++|++||+||+|....
T Consensus       177 ~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~  256 (407)
T PLN02368        177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI  256 (407)
T ss_pred             CEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            77666642       378999998863     15899999999999999998   4567788999999999999976532


Q ss_pred             c-----ccc-c----c-------cCCcEEEECCcccc-CCCCCcEEEEEE---eChHHHHHHHHHhhhcCCCccHHHHHH
Q 009523          331 N-----QKA-L----S-------LGADLVLHSATKFI-GGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYL  389 (532)
Q Consensus       331 ~-----~~~-l----~-------~gaDivv~S~sK~l-gg~gd~~gG~lv---~~~~li~~l~~~~~~~G~~~~~~~a~l  389 (532)
                      .     ..+ .    .       .+..++++|+||.| +-.| .+.||++   +++++++.+...... ..+.+....++
T Consensus       257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~a  334 (407)
T PLN02368        257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIF  334 (407)
T ss_pred             cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHH
Confidence            1     111 1    1       12458899999998 4454 4678888   478888888776422 23344444444


Q ss_pred             HHHhHH--------------HHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          390 IIRGMK--------------TLHLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       390 ~l~~l~--------------tl~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                      +...++              .+....+...+++..+.+.|++.|++.
T Consensus       335 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~  381 (407)
T PLN02368        335 MGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVV  381 (407)
T ss_pred             HHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence            444332              111223444566777888888877653

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.3e-18  Score=185.00  Aligned_cols=213  Identities=16%  Similarity=0.152  Sum_probs=140.4

Q ss_pred             hhHHHHHHHHHhhhCC-------CcEEE---eCCHHHHHHHHHH---HhccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          201 PTTVVVEEKMSALEGA-------ESTVI---MASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga-------~~~i~---~sSG~~Ai~~al~---all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      ....+||+++++++..       ++.|+   +.+|++|+..++.   ++++|||+|++++|+|+...    ..++..|.+
T Consensus        72 ~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~  147 (404)
T PTZ00376         72 EGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV----NIFKSAGLN  147 (404)
T ss_pred             CCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCc
Confidence            4466788888886521       12343   5555577776654   67899999999999998855    345566777


Q ss_pred             EEEeCC---C----CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc--
Q 009523          268 ATVIDP---A----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--  333 (532)
Q Consensus       268 v~~vd~---~----dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~--  333 (532)
                      +..++.   +    |++.++++++.  .+++++++++|+||||.+++   +++|+++|++||+++|+|++|.......  
T Consensus       148 ~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  227 (404)
T PTZ00376        148 VKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLD  227 (404)
T ss_pred             eeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHH
Confidence            777764   2    68899888852  24678888999999999997   5577888999999999999986543211  


Q ss_pred             ----cc----ccC-CcEEEECCccccCCCCCcEEEEE---EeChHHHHHHH----HHhhhcCCCccHHHHHHHHHhHHH-
Q 009523          334 ----AL----SLG-ADLVLHSATKFIGGHNDVLAGSI---SGSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMKT-  396 (532)
Q Consensus       334 ----~l----~~g-aDivv~S~sK~lgg~gd~~gG~l---v~~~~li~~l~----~~~~~~G~~~~~~~a~l~l~~l~t-  396 (532)
                          +.    ..+ ..+++.|+||.++.+|. +.||+   ++++++++.+.    ........+.+...+.++...++. 
T Consensus       228 ~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl-RvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  306 (404)
T PTZ00376        228 KDAYAIRLFAERGVEFLVAQSFSKNMGLYGE-RIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDP  306 (404)
T ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCccccccc-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCH
Confidence                11    111 34899999999996653 57776   56777655443    222222333344444444443321 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhC
Q 009523          397 ---------LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       397 ---------l~~r~~~~~~~a~~la~~L~~~  418 (532)
                               +....++..++++.+.+.|+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  337 (404)
T PTZ00376        307 ELRAEWLSELKEMSGRIQNMRQLLYDELKAL  337 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     1122234456667777788765

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.84  E-value=3.5e-18  Score=183.28  Aligned_cols=210  Identities=18%  Similarity=0.198  Sum_probs=162.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh---------ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al---------l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .+...+||+++|+++|.+.+++++||++|+..++.++         ++|||+||++.++|.++...+    ...|.++++
T Consensus        62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v----~~~G~~pv~  137 (438)
T PRK15407         62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI----IQNGLVPVF  137 (438)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEE
Confidence            4678899999999999999999999999999988875         488999999999998876443    345778777


Q ss_pred             eCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEE
Q 009523          271 IDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLV  342 (532)
Q Consensus       271 vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDiv  342 (532)
                      +|.+      |++++++++++ +|++|++++   ++|...|+++|.++|+++|++||+|++++.+...+....|  .|+.
T Consensus       138 vdvd~~~~~id~~~le~~i~~-~tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~  213 (438)
T PRK15407        138 VDVELPTYNIDASLLEAAVSP-KTKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIA  213 (438)
T ss_pred             EecCCCcCCcCHHHHHHHcCc-CCeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceE
Confidence            7642      78999999987 799999965   4677889999999999999999999998765433322222  3899


Q ss_pred             EECCc--cccCCCCCcEEEEEEeCh-HHHHHHHHHhhh-------------------------------------cC--C
Q 009523          343 LHSAT--KFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-------------------------------------LG--G  380 (532)
Q Consensus       343 v~S~s--K~lgg~gd~~gG~lv~~~-~li~~l~~~~~~-------------------------------------~G--~  380 (532)
                      ++|++  |.+..+.   ||+++.++ ++.++++..+..                                     .|  .
T Consensus       214 ~fSf~~~k~~~~ge---GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~  290 (438)
T PRK15407        214 TLSFYPAHHITMGE---GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNL  290 (438)
T ss_pred             EEeCCCCCCccccC---ceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccccc
Confidence            99885  5565432   68888765 444444432210                                     11  2


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      .++.+.|.+.+..|+.++.++++..++++++.+.|.+.+.
T Consensus       291 rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~  330 (438)
T PRK15407        291 KITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED  330 (438)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            4567788888999999999999999999999999987664

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.83  E-value=3e-18  Score=184.68  Aligned_cols=211  Identities=22%  Similarity=0.225  Sum_probs=151.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      +++...+||++++++++.+.++++++|++|+..++.++++||| |+++++.|..+...+    ...|.+++.++.     
T Consensus        76 ~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i----~~~G~~~v~v~~~~~~~  150 (460)
T PRK13238         76 GSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHI----ELNGATAVDLVIDEALD  150 (460)
T ss_pred             CCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHH----HHcCCEEEEEecccccc
Confidence            4567899999999999999999999999999999999999999 999998887655333    345666665542     


Q ss_pred             ----------CCHHHHHHhhcC---CCeeEEEEeCCCCCCC-cccC---HHHHHHHHHhCCCEEEEECCCCC--------
Q 009523          274 ----------ADMEGLEAALNN---NNVSLFFTESPTNPFL-RCVD---VKLVSDLCHKKGAIVCIDGTFAT--------  328 (532)
Q Consensus       274 ----------~dle~Le~al~~---~~tklV~lesP~NptG-~v~d---l~~I~~la~~~gi~lIvDet~a~--------  328 (532)
                                .|+++|++++++   .+|++|++++|+||+| .+.+   +++|.++|++||+++|+|+++..        
T Consensus       151 ~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~  230 (460)
T PRK13238        151 TGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQ  230 (460)
T ss_pred             ccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhh
Confidence                      478999999974   2699999999999998 7776   57899999999999999997521        


Q ss_pred             ---CCccccc-------ccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhh------hcCCCccHHHHHHHH
Q 009523          329 ---PLNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH------VLGGALNPNAAYLII  391 (532)
Q Consensus       329 ---~~~~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~------~~G~~~~~~~a~l~l  391 (532)
                         .+.....       ....|+++.|.+|.+.++   .||+++.+ ++++++++....      .+|+ ++......+.
T Consensus       231 ~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g-~~~~~~~Ala  306 (460)
T PRK13238        231 REPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGG-LAGRDMEALA  306 (460)
T ss_pred             ccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccC-cHHHHHHHHH
Confidence               1111111       124799999999987655   37888887 578888876531      1222 2333233333


Q ss_pred             HhHHH--HHHHHHHHHHHHHHHHHHHHhC
Q 009523          392 RGMKT--LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       392 ~~l~t--l~~r~~~~~~~a~~la~~L~~~  418 (532)
                      .+++.  -....+...+++++|.+.|.+.
T Consensus       307 ~~l~e~~~~~~~~~~~~~~~~l~~~L~~~  335 (460)
T PRK13238        307 VGLYEGMDEDYLAYRIGQVEYLGEGLEEA  335 (460)
T ss_pred             hhHHHhhChHHHHHHHHHHHHHHHHHHHC
Confidence            34433  1223344445678889988874

>PLN02672 methionine S-methyltransferase

Probab=99.83  E-value=2.3e-18  Score=197.97  Aligned_cols=211  Identities=16%  Similarity=0.120  Sum_probs=146.5

Q ss_pred             HHHHHHHHHhhhCCC----cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          203 TVVVEEKMSALEGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~----~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      .+.+.+.+++.+|.+    +.|++++|+ +++..++.++++|||+|+++.|+|+...    ..++..|.++..++.+   
T Consensus       736 r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~----~~a~~~Ga~vv~Vpl~~e~  811 (1082)
T PLN02672        736 RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYV----SAAKFLKANFRRIPTKSSD  811 (1082)
T ss_pred             HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEeccccc
Confidence            678888888887752    357777776 7888889999999999999999998754    3445568888777642   


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCC-CCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc---------cc-c-
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPT-NPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---------KA-L-  335 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~-NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~---------~~-l-  335 (532)
                          |+++|++++++.+.++|++++|+ ||||.+++   +++|+++|++||++||+||+|......         .+ . 
T Consensus       812 gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~  891 (1082)
T PLN02672        812 GFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILS  891 (1082)
T ss_pred             CCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHH
Confidence                57889999865335689999998 99999997   567788899999999999998632110         00 0 


Q ss_pred             cc------CCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCC-ccHHHHHHHHHhH--------HHHHH
Q 009523          336 SL------GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA-LNPNAAYLIIRGM--------KTLHL  399 (532)
Q Consensus       336 ~~------gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~-~~~~~a~l~l~~l--------~tl~~  399 (532)
                      ..      ...+++.|+||.++.+| .+.||+++++ ++++.++......+.. .+...+..++..+        +.+..
T Consensus       892 ~~~~~sks~nVIvL~SfSKkf~lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e  970 (1082)
T PLN02672        892 RLKSSNPSFAVALLGGLSTELLSGG-HEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAE  970 (1082)
T ss_pred             HhccccCCceEEEEeCcHHhhccHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            01      13478899999998777 4678999865 5888887654322221 2222222222211        12233


Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q 009523          400 RVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~  418 (532)
                      ..+...++.+.+.+.|+++
T Consensus       971 ~r~~Lk~rRd~L~e~L~~~  989 (1082)
T PLN02672        971 QKKILKSRAERLKETLEAC  989 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHC
Confidence            3344567778888899876

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.83  E-value=5.7e-18  Score=179.66  Aligned_cols=285  Identities=19%  Similarity=0.179  Sum_probs=183.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc----------CCCEEEEcCCCCcchHHHHHHhcc------
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKTRIFIETVLP------  262 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~----------~Gd~VIv~~~~y~~t~~~~~~~l~------  262 (532)
                      .++..+.+++.++++.+.+.+++++||++|+..++..+..          .+++|++.+..|++..........      
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~  150 (400)
T PTZ00125         71 YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYN  150 (400)
T ss_pred             cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhc
Confidence            4678889999999998888999999999999999986631          347888888888874322111100      


Q ss_pred             ---cCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCC-----
Q 009523          263 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-----  330 (532)
Q Consensus       263 ---~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~-----  330 (532)
                         .....+..++..|+++|+++++..++++|++|+++||+|.+.|    +++|.++|++||+++|+||++....     
T Consensus       151 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~  230 (400)
T PTZ00125        151 NFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKL  230 (400)
T ss_pred             cCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence               0111234556679999999996337999999999999999998    9999999999999999999975311     


Q ss_pred             -cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHH
Q 009523          331 -NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  407 (532)
Q Consensus       331 -~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~  407 (532)
                       .........|+++  ++|.++++. ...|++++++++++.+...........++..+..+...++.+..  ..++..+.
T Consensus       231 ~~~~~~~~~pd~~~--~sK~l~~g~-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~  307 (400)
T PTZ00125        231 LAHDHEGVKPDIVL--LGKALSGGL-YPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRL  307 (400)
T ss_pred             hHHHhcCCCCCEEE--EcccccCCC-cCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             1111223357776  679998643 24688889999888775432211122356666665555554431  12233344


Q ss_pred             HHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          408 ALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       408 a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      .+.+.+.|++.    +.+..+                  ++.|.+++++++. +......|.+.|...++.+..+     
T Consensus       308 ~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----  364 (400)
T PTZ00125        308 GEVFRDGLKELLKKSPWVKEI------------------RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT-----  364 (400)
T ss_pred             HHHHHHHHHHHHhcCCCeEEE------------------ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeec-----
Confidence            44455555442    211111                  2357788998864 2234556666665445443321     


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                            .++.|||+..+    ++.++.++.|.++|.+
T Consensus       365 ----------------------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        365 ----------------------HDNIIRFAPPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             ----------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                                  14689999654    3455666666666653

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.82  E-value=3.5e-18  Score=180.81  Aligned_cols=287  Identities=16%  Similarity=0.159  Sum_probs=185.2

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh----ccCCC----EEEEcCCCCcchHHHHHHhcc--c----
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVLP--K----  263 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al----l~~Gd----~VIv~~~~y~~t~~~~~~~l~--~----  263 (532)
                      +.++...+|+++|+++.+.+.+++++||++|+..+++.+    ..+||    +||+.++.|++........-.  .    
T Consensus        70 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~  149 (389)
T PRK01278         70 YRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEG  149 (389)
T ss_pred             cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence            567888999999999987788999999999999998866    45676    899999999985433211100  0    


Q ss_pred             C---CcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc----CHHHHHHHHHhCCCEEEEECCCCCCCc-----
Q 009523          264 M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN-----  331 (532)
Q Consensus       264 ~---Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~----dl~~I~~la~~~gi~lIvDet~a~~~~-----  331 (532)
                      +   .-.+..++..|++++++++++ ++++|++|.++|++|...    .+++|.++|++||+++|+||++.....     
T Consensus       150 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~  228 (389)
T PRK01278        150 FGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF  228 (389)
T ss_pred             CCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce
Confidence            0   011233455689999999987 799999999888888443    488999999999999999999763211     


Q ss_pred             -ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHH
Q 009523          332 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTA  408 (532)
Q Consensus       332 -~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a  408 (532)
                       ........|++  |++|.++++  ...|++++++++++.+...........++..++.++..++.+..  ..++..++.
T Consensus       229 ~~~~~~~~pdi~--t~sK~l~~G--~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~  304 (389)
T PRK01278        229 AHEWAGVTPDIM--AVAKGIGGG--FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMG  304 (389)
T ss_pred             eecccCCCCCEE--EEehhccCC--cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence             11112234654  689999843  46788889888877765433222233567777776666665421  233444555


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      +++.+.|++...    .+|.+.         ...++.|.++++++..   ....|.+.|...++.+..|           
T Consensus       305 ~~l~~~l~~l~~----~~~~~~---------~~v~g~G~~~~i~~~~---~~~~~~~~l~~~GV~~~p~-----------  357 (389)
T PRK01278        305 LYLKQKLEGLVD----RFPDVI---------EEVRGKGLLLGLKCVV---PNRDLVQALRDEGLLTVGA-----------  357 (389)
T ss_pred             HHHHHHHHHHHh----hCCCce---------eeEecccEEEEEEEec---CHHHHHHHHHHCCeEEeec-----------
Confidence            555555554210    011100         0123457788888853   2345666554445443322           


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhhC
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHAI  532 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~l  532 (532)
                                      ..+.|||++.+    ++.++.++.|+++|+++
T Consensus       358 ----------------~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~~  389 (389)
T PRK01278        358 ----------------GDNVVRLLPPLIITEEEIDEALERLERAAESL  389 (389)
T ss_pred             ----------------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHhC
Confidence                            14689998654    44566666777776643

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.82  E-value=2e-18  Score=186.32  Aligned_cols=220  Identities=18%  Similarity=0.126  Sum_probs=143.6

Q ss_pred             CCCCCCCchhHHH-HHHHHHhhhCCC-cEE-Ee---CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcc----
Q 009523          193 FEYGRYGNPTTVV-VEEKMSALEGAE-STV-IM---ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP----  262 (532)
Q Consensus       193 ~~Y~R~~~p~~~~-Le~~lA~l~ga~-~~i-~~---sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~----  262 (532)
                      |..|.......+. .++++++++|++ +.+ +.   +||++|+.+++.+++++||+|++.+..|++.........+    
T Consensus        71 ~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~  150 (452)
T PTZ00094         71 YYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVS  150 (452)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccc
Confidence            3333333333442 457999999984 222 33   6899999999999999999999999999886532211100    


Q ss_pred             --cCCcEEEEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          263 --KMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       263 --~~Gv~v~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                        ..++++..++.     .|+++|++++++.++++|++.  ++.+|...|+++|.++|+++|+++++|++++.+..    
T Consensus       151 ~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~  228 (452)
T PTZ00094        151 ATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGV  228 (452)
T ss_pred             cceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCC
Confidence              11233333332     289999999965457787763  34599999999999999999999999999876543    


Q ss_pred             -ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-----hhcCCCccHHHHHHHHHhHHHH-----HHH
Q 009523          332 -QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNAAYLIIRGMKTL-----HLR  400 (532)
Q Consensus       332 -~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-----~~~G~~~~~~~a~l~l~~l~tl-----~~r  400 (532)
                       ..+.. ++|+++.|+||+++|+.   ||+++.++++.+.+....     ..+.+..++...+.+..+++.+     ...
T Consensus       229 ~~~~~~-~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~  304 (452)
T PTZ00094        229 LPSPFP-YADVVTTTTHKSLRGPR---SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEY  304 (452)
T ss_pred             CCCCCC-CCcEEEcCCccCCCCCC---ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHH
Confidence             12333 79999999999997664   566666665444332211     1111233444333334444443     234


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 009523          401 VQQQNSTALRMAKILEAH  418 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~  418 (532)
                      .++..++++++.+.|.+.
T Consensus       305 ~~~i~~l~~~l~~~L~~~  322 (452)
T PTZ00094        305 AKQVLKNAKALAAALEKR  322 (452)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            456667888888888764

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.82  E-value=2.6e-18  Score=186.58  Aligned_cols=145  Identities=17%  Similarity=0.249  Sum_probs=107.7

Q ss_pred             cEEEeCCHHHHHHHHHHH-----hccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-------CCHHHHHHhhcC
Q 009523          218 STVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN  285 (532)
Q Consensus       218 ~~i~~sSG~~Ai~~al~a-----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-------~dle~Le~al~~  285 (532)
                      +++++++|++|+..++.+     +++|||+|++++|.|.......  .+...|+.++.++.       .|+++|++++++
T Consensus       163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~--~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~  240 (527)
T PRK09275        163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIP--ELPRYDLEVVHINADEENEWQYPDSELEKLRDP  240 (527)
T ss_pred             eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHH--HHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence            355555566999988876     6899999999999998755332  13334566655542       267899998877


Q ss_pred             CCeeEEEEeCCCCCCCcccC---HHHHHHHHHh--CCCEEEEECCCCCCCc-c-cccc--cCCcEEEECCccccCCCCCc
Q 009523          286 NNVSLFFTESPTNPFLRCVD---VKLVSDLCHK--KGAIVCIDGTFATPLN-Q-KALS--LGADLVLHSATKFIGGHNDV  356 (532)
Q Consensus       286 ~~tklV~lesP~NptG~v~d---l~~I~~la~~--~gi~lIvDet~a~~~~-~-~~l~--~gaDivv~S~sK~lgg~gd~  356 (532)
                       ++|+|++++|+||||.+++   +++|+++|++  ++++||+||+|..... . ....  ....+++.|+||+++..|. 
T Consensus       241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~-  318 (527)
T PRK09275        241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGW-  318 (527)
T ss_pred             -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHh-
Confidence             7999999999999999998   6678888854  5999999999876432 1 1111  1245899999999987764 


Q ss_pred             EEEEEEeChH
Q 009523          357 LAGSISGSGK  366 (532)
Q Consensus       357 ~gG~lv~~~~  366 (532)
                      +.||++++++
T Consensus       319 RlG~i~~~~~  328 (527)
T PRK09275        319 RLGVIALHED  328 (527)
T ss_pred             HHhhhhcCch
Confidence            5788888775

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.82  E-value=6.2e-19  Score=179.73  Aligned_cols=167  Identities=19%  Similarity=0.262  Sum_probs=132.1

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      +.+--.++.....++++.+|+++|+++++++++| ++++..++.+++++||+|++++++|.+....+    ...|+++.+
T Consensus        50 ~~d~l~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~  125 (294)
T cd00615          50 GLDDLLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVY  125 (294)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEE
Confidence            3444455677789999999999999888875555 58999999999999999999999998866443    345777766


Q ss_pred             eCC-----------CCHHHHHHhhcC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC------cc
Q 009523          271 IDP-----------ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQ  332 (532)
Q Consensus       271 vd~-----------~dle~Le~al~~-~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~------~~  332 (532)
                      ++.           .|++++++++++ .++++|++++| |++|.+.|+++|+++|+++|+++++|++++..+      ..
T Consensus       126 v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~  204 (294)
T cd00615         126 LKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPS  204 (294)
T ss_pred             ecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCc
Confidence            642           378999999864 26899999998 699999999999999999999999999986532      22


Q ss_pred             cccccCCcEEEECCccccCCCCCcEEEEEEeCh
Q 009523          333 KALSLGADLVLHSATKFIGGHNDVLAGSISGSG  365 (532)
Q Consensus       333 ~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~  365 (532)
                      .....|+|+++.|+||+++|..  .+|++..+.
T Consensus       205 ~~~~~~~div~~S~hK~l~g~~--~~~~l~~~~  235 (294)
T cd00615         205 SAAMAGADIVVQSTHKTLPALT--QGSMIHVKG  235 (294)
T ss_pred             chhhcCCcEEEEchhcccchHh--HHHHHHhCC
Confidence            3345689999999999998653  345555544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK08637 hypothetical protein; Provisional

Probab=99.81  E-value=3.2e-17  Score=173.52  Aligned_cols=288  Identities=13%  Similarity=0.135  Sum_probs=169.1

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhC-----C--C--cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhc
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEG-----A--E--STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~g-----a--~--~~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l  261 (532)
                      .+.|+.  ......|++.+++...     .  +  +.|++++| ++++.+++.+++++||+|++++|+|+.....+   .
T Consensus        37 ~~~Y~~--~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~---~  111 (388)
T PRK08637         37 IFPYAP--PQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTF---N  111 (388)
T ss_pred             ccCCCC--CCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH---H
Confidence            345553  2335667777776541     1  2  23455555 59999999999999999999999998754322   1


Q ss_pred             ccCCcEEEEeCC------CCHHHHHHhhc---CCCeeEEEEeCCCCCCCcccCH---HHHHHHHHh-----CCCEEEEEC
Q 009523          262 PKMGITATVIDP------ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVDV---KLVSDLCHK-----KGAIVCIDG  324 (532)
Q Consensus       262 ~~~Gv~v~~vd~------~dle~Le~al~---~~~tklV~lesP~NptG~v~dl---~~I~~la~~-----~gi~lIvDe  324 (532)
                      ...|.++..++.      .|++++++.++   +..++++++++|+||||.+++.   ++|+++|++     +++++|+||
T Consensus       112 ~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De  191 (388)
T PRK08637        112 TRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD  191 (388)
T ss_pred             HhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence            235777776653      26889988876   2246678888999999999984   566666654     899999999


Q ss_pred             CCCCCCcc----cc-c----cc-CCc--EEEECCccccCCCCCcEEEEEEe------ChHHHHHHHHHh----hhcCCCc
Q 009523          325 TFATPLNQ----KA-L----SL-GAD--LVLHSATKFIGGHNDVLAGSISG------SGKLVTQIRNLH----HVLGGAL  382 (532)
Q Consensus       325 t~a~~~~~----~~-l----~~-gaD--ivv~S~sK~lgg~gd~~gG~lv~------~~~li~~l~~~~----~~~G~~~  382 (532)
                      +|......    .+ .    +. +..  +++.|+||.++.+| .+.||++.      ++++++.+....    .......
T Consensus       192 ~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  270 (388)
T PRK08637        192 AYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNG  270 (388)
T ss_pred             cchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCC
Confidence            97643211    01 1    11 122  23459999888776 46788874      357777665321    1111233


Q ss_pred             cHHHHHHHHHhHHH--HHHHH----HHHHHHHHHHHHHHHhCC---CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEE
Q 009523          383 NPNAAYLIIRGMKT--LHLRV----QQQNSTALRMAKILEAHP---KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV  453 (532)
Q Consensus       383 ~~~~a~l~l~~l~t--l~~r~----~~~~~~a~~la~~L~~~p---~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l  453 (532)
                      +.....++...++.  +...+    ....++...+.+.|++++   .+ .+ +|               ...|.++|+.+
T Consensus       271 s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-~~-~~---------------~~~g~~~~~~l  333 (388)
T PRK08637        271 PHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAW-QA-YP---------------FNSGYFMCLKL  333 (388)
T ss_pred             CcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-cc-cc---------------ccceEEEEecC
Confidence            44444443333321  11111    122233344455665542   11 11 11               11456788888


Q ss_pred             cCCHHHHHHHHHHc-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHH
Q 009523          454 DGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQAL  529 (532)
Q Consensus       454 ~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed---~~dli~dL~~AL  529 (532)
                      ++  .....|.+.+ +..++++..                           ...+++||+++..+   .++.++.|.+++
T Consensus       334 ~~--~~~~~l~~~l~~~~gv~~~~---------------------------~~~~~iRi~~~~~~~~~i~~~~~~l~~~~  384 (388)
T PRK08637        334 KG--VDAEELRVHLLEKYGIGTIA---------------------------LNETDLRIAFSCVEEEDIPELFDSIYKAI  384 (388)
T ss_pred             Ch--HHHHHHHHHHhhhcceEEEe---------------------------ccCCceEEEeecCCHHHHHHHHHHHHHHH
Confidence            63  3456677666 344554321                           01468999998644   445556666666


Q ss_pred             hh
Q 009523          530 HA  531 (532)
Q Consensus       530 ~~  531 (532)
                      .+
T Consensus       385 ~~  386 (388)
T PRK08637        385 KD  386 (388)
T ss_pred             Hh
Confidence            54

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.81  E-value=1e-17  Score=180.57  Aligned_cols=283  Identities=19%  Similarity=0.252  Sum_probs=184.1

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----C
Q 009523          203 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----D  275 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----d  275 (532)
                      ..++++.+++++|.+  ..+++++|++++..++.++ ..+||+|+++++.|+.+...+.......|++++.++.+    |
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d  193 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD  193 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence            444557889999974  4556777778888888887 47999999999999887766655556678998888754    7


Q ss_pred             HHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEE--ECCCCCCCcccccccCCcEEEECCccc----
Q 009523          276 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHSATKF----  349 (532)
Q Consensus       276 le~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIv--Det~a~~~~~~~l~~gaDivv~S~sK~----  349 (532)
                      +++|++++++ +|++|++++| |+||.+.|+++|.++|+++|+++++  |... .+....+.++|+|+++.|.+|+    
T Consensus       194 ~~~l~~~i~~-~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~-~g~~~~~~~~~~D~~~~s~~k~~~~~  270 (447)
T PRK00451        194 LEALEAAVDD-DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVS-LGLLKPPGEYGADIVVGEGQPLGIPL  270 (447)
T ss_pred             HHHHHHhcCC-CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHH-hccCCCcccCCCCEEEECCCcCCCCC
Confidence            8999999987 6999999999 8999999999999999999999998  5442 2222345578999999987775    


Q ss_pred             -cCCCCCcEEEEEEeChHHHHHHHH-------------------------HhhhcCC-Cc---cH---HHHHHHHH--hH
Q 009523          350 -IGGHNDVLAGSISGSGKLVTQIRN-------------------------LHHVLGG-AL---NP---NAAYLIIR--GM  394 (532)
Q Consensus       350 -lgg~gd~~gG~lv~~~~li~~l~~-------------------------~~~~~G~-~~---~~---~~a~l~l~--~l  394 (532)
                       ++|++   +|+++.++++++.+..                         .+...+. ..   .+   ..++..++  +-
T Consensus       271 ~~~Gpg---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~  347 (447)
T PRK00451        271 SFGGPY---LGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGP  347 (447)
T ss_pred             CCCCCC---chHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCH
Confidence             55554   7888888877776310                         0000010 00   11   12221111  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009523          395 KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP  474 (532)
Q Consensus       395 ~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~v  474 (532)
                      +.+....++..++++++.+.|++.+++...  ++    +           +..++.+.++.+   ...+.+.|...++.+
T Consensus       348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~----~-----------~~~~~~v~~~~~---~~~~~~~L~~~gi~~  407 (447)
T PRK00451        348 EGLRELAEQNHQKAHYLAERLAEIGGVELF--DG----P-----------FFNEFVVRLPKP---AEEVNEALLEKGILG  407 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CC----C-----------eEEEEEEecCCC---HHHHHHHHHhcCCCC
Confidence            234455566778888888999887665321  11    0           112233444322   345566655444322


Q ss_pred             cCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          475 SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       475 s~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .+-      ..+    |.  +       +. .+.+|+|++..++++.++.+.++|++
T Consensus       408 ~~~------~~~----~~--~-------~~-~~~~rvs~~~~~t~e~i~~l~~~L~~  444 (447)
T PRK00451        408 GYD------LGR----YY--P-------EL-GNHLLVCVTEKRTKEDIDALVAALGE  444 (447)
T ss_pred             Ccc------ccc----cc--C-------Cc-CCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            110      001    00  0       11 36899999876777777777777764

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.81  E-value=9.3e-18  Score=177.59  Aligned_cols=288  Identities=16%  Similarity=0.217  Sum_probs=185.5

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCC-------CEEEEcCCCCcchHHHHHHhc------
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------GHIVTTTDCYRKTRIFIETVL------  261 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~G-------d~VIv~~~~y~~t~~~~~~~l------  261 (532)
                      ...|.++...+|+++|+++.+.+.+++++||++|+..+++.+...+       ++|++.++.|++........-      
T Consensus        75 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  154 (396)
T PRK02627         75 SNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQ  154 (396)
T ss_pred             ccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCcccc
Confidence            4456789999999999999888889999999999999999765443       679999999987432211111      


Q ss_pred             ---ccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc-ccC---HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          262 ---PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-CVD---VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       262 ---~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~-v~d---l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                         ......+..++..|++++++++.+ ++++|++++++||+|. +.+   +++|.++|+++|+++|+||++.....   
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~  233 (396)
T PRK02627        155 EGFEPLVEGFIYVPFNDIEALKAAITD-KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK  233 (396)
T ss_pred             ccCCCCCCCceEeCCCCHHHHHHhcCC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc
Confidence               000112344556689999999976 7999999999999984 444   78999999999999999999763211   


Q ss_pred             ---ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHH
Q 009523          332 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  406 (532)
Q Consensus       332 ---~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~  406 (532)
                         ........|++  +++|.+++ | ...|++++++++++.+...........++..++.+...++.+..  .+++..+
T Consensus       234 ~~~~~~~~~~pdi~--t~sK~~~~-G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~  309 (396)
T PRK02627        234 LFAYQHYGIEPDIM--TLAKGLGG-G-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAE  309 (396)
T ss_pred             eeeehhcCCCCCEE--EEcchhhC-C-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHH
Confidence               11122234654  58999994 3 56788999988887775422222233567777766666664432  2333444


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      +.+++.+.|.+...    .+|..          ...++.|.+++++++.   ....|.+.+...++.+..+         
T Consensus       310 ~~~~~~~~l~~~~~----~~~~~----------~~~~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~---------  363 (396)
T PRK02627        310 VGEYLRAKLRELLE----KYPGI----------KEVRGLGLMIGIELDR---PAAEIVKKALEKGLLINVT---------  363 (396)
T ss_pred             HHHHHHHHHHHHHH----hCCCe----------eeeccCcEEEEEEecC---cHHHHHHHHHHCCeEEeec---------
Confidence            45555555543210    01111          0113457889999842   2455666655445544332         


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                        ..+.|||++.+    ++.++.++.|.++|+.
T Consensus       364 ------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        364 ------------------GDNVLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             ------------------CCCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence                              13579998753    4455566666666654

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.81  E-value=1.1e-17  Score=177.32  Aligned_cols=213  Identities=14%  Similarity=0.111  Sum_probs=137.1

Q ss_pred             hhHHHHHHHHHhhhCC-------CcEE--EeCCH-HHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          201 PTTVVVEEKMSALEGA-------ESTV--IMASG-MSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga-------~~~i--~~sSG-~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      ....+|++++++++..       ++.+  ++++| ++|+..++..+  ++|||+|++++|+|.....    .++..|+++
T Consensus        69 ~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~----~~~~~g~~~  144 (396)
T PRK09257         69 EGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRA----IFEAAGLEV  144 (396)
T ss_pred             CCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHH----HHHHcCCcE
Confidence            4456788888887521       2222  55555 59999998665  5899999999999998653    445567777


Q ss_pred             EEeCC-------CCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----
Q 009523          269 TVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       269 ~~vd~-------~dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----  332 (532)
                      +.++.       .|+++++++++.  .+++++++++|+||||.+++   +++|+++|++||+++|+|++|......    
T Consensus       145 v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~  224 (396)
T PRK09257        145 KTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEED  224 (396)
T ss_pred             EEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHH
Confidence            76642       278899888752  13567777999999999998   557888899999999999998654321    


Q ss_pred             -ccc---c-c-CCcEEEECCccccCCCCCcEEEEEEe---ChHHH----HHHHHHhhhcCCCccHHHHHHHHHhHH----
Q 009523          333 -KAL---S-L-GADLVLHSATKFIGGHNDVLAGSISG---SGKLV----TQIRNLHHVLGGALNPNAAYLIIRGMK----  395 (532)
Q Consensus       333 -~~l---~-~-gaDivv~S~sK~lgg~gd~~gG~lv~---~~~li----~~l~~~~~~~G~~~~~~~a~l~l~~l~----  395 (532)
                       .++   . . ...+++.|+||.++.+| .+.||+++   +++.+    ..++..........+...+.++.+.++    
T Consensus       225 ~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  303 (396)
T PRK09257        225 AYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPEL  303 (396)
T ss_pred             HHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHH
Confidence             111   1 1 23588999999999766 45788762   44433    333333222223334444333333222    


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          396 ------TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       396 ------tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                            .+....++..++.+.+.+.|+++
T Consensus       304 ~~~~~~~~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        304 RAEWEAELEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  12222334456666777777765

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.5e-17  Score=167.29  Aligned_cols=223  Identities=17%  Similarity=0.174  Sum_probs=154.1

Q ss_pred             CchhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          199 GNPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~g--------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      +.......|+++|+++.        +++++++++..+||..++.++.+||..|++++|.|+-    +...+...|++|++
T Consensus       101 ps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~----Y~~~a~~~~lEVR~  176 (447)
T KOG0259|consen  101 PSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPL----YDTRAIYSGLEVRY  176 (447)
T ss_pred             CccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCch----HHHhhhhcCceeEe
Confidence            45567778899998843        3466666666799999999999999999999999974    22345667999999


Q ss_pred             eCCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc-
Q 009523          271 IDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL-  335 (532)
Q Consensus       271 vd~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l-  335 (532)
                      +|..       |++.+|+++++ +|.++++.+|+||+|.++.   +++|+++|+++|+++|.||+|.-.+.    +-|. 
T Consensus       177 ydlLPe~~weIDL~~veal~DE-NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg  255 (447)
T KOG0259|consen  177 YDLLPEKDWEIDLDGVEALADE-NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMG  255 (447)
T ss_pred             ecccCcccceechHHHHHhhcc-CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchh
Confidence            8742       89999999988 7999999999999999987   78999999999999999999754221    1111 


Q ss_pred             ---ccCCcEEEECCccccCCCCCcEEEEEEeCh--------HHHHHHHHHhhhcCCCccHHHHHH---HHHhHH-HHHHH
Q 009523          336 ---SLGADLVLHSATKFIGGHNDVLAGSISGSG--------KLVTQIRNLHHVLGGALNPNAAYL---IIRGMK-TLHLR  400 (532)
Q Consensus       336 ---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~--------~li~~l~~~~~~~G~~~~~~~a~l---~l~~l~-tl~~r  400 (532)
                         ..-..+.+.+.+|-+--+|.. .||++..+        ..++.+........+......+++   +.+.-+ -+..+
T Consensus       256 ~fssiVPVitlggisKrW~VPGWR-lGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~  334 (447)
T KOG0259|consen  256 KFSSIVPVITLGGISKRWIVPGWR-LGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKK  334 (447)
T ss_pred             hccccCceEeecccccccccCCce-eeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHH
Confidence               122357888999977777764 67777532        233444444332222111111111   111111 13344


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCC
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYP  427 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~P  427 (532)
                      ..-...|++-..++|++.|.+....-|
T Consensus       335 ~~~lk~na~l~y~~Lk~IP~l~cp~kP  361 (447)
T KOG0259|consen  335 LSFLKSNADLCYSRLKDIPCLTCPVKP  361 (447)
T ss_pred             HHHHHhhHHHHHHHHhcCCCcccCcCC
Confidence            455567788888999998876533333

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.80  E-value=2.8e-17  Score=178.34  Aligned_cols=145  Identities=17%  Similarity=0.249  Sum_probs=107.9

Q ss_pred             cEEEeCCHHHHHHHHHHH-----hccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC------------CCHHHHH
Q 009523          218 STVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------------ADMEGLE  280 (532)
Q Consensus       218 ~~i~~sSG~~Ai~~al~a-----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~------------~dle~Le  280 (532)
                      +++++++|++|+..++.+     ++.|||+|+++.|.|........  +...|++++.++.            .|.++|+
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~--l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~  234 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE--LPRYDFEVVRIKADEMTEDGTHTWQYPDKELE  234 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH--HhcCCcEEEEeecccccccccccCCCCHHHHH
Confidence            455566666999988876     78999999999999987554321  3344666665542            2568899


Q ss_pred             HhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhC--CCEEEEECCCCCCCc--cccccc--CCcEEEECCccccC
Q 009523          281 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLN--QKALSL--GADLVLHSATKFIG  351 (532)
Q Consensus       281 ~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~--gi~lIvDet~a~~~~--~~~l~~--gaDivv~S~sK~lg  351 (532)
                      +++++ ++|+|++++|+||||.+++   +++|+++|+++  +++||+||+|.....  ......  ...+++.|+||++|
T Consensus       235 ~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg  313 (521)
T TIGR03801       235 KLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFG  313 (521)
T ss_pred             HhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhcc
Confidence            88776 7999999999999999998   56778889876  899999999875432  111111  23589999999998


Q ss_pred             CCCCcEEEEEEeChH
Q 009523          352 GHNDVLAGSISGSGK  366 (532)
Q Consensus       352 g~gd~~gG~lv~~~~  366 (532)
                      ..|. +.|+++++++
T Consensus       314 ~~G~-RlG~i~~~~~  327 (521)
T TIGR03801       314 ATGW-RLGTIALHKD  327 (521)
T ss_pred             Cchh-hhhhhhcCch
Confidence            7764 5788888754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.80  E-value=2.1e-17  Score=176.14  Aligned_cols=212  Identities=17%  Similarity=0.183  Sum_probs=152.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      +++...+||+++++++|.+.++++++|++|+..+++++++|||.| ++++.|..+...+    ...|.++++++.     
T Consensus        51 ~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i----~~~Ga~pv~v~i~~~~~  125 (431)
T cd00617          51 GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHI----EANGAVPVDLVIDEAHD  125 (431)
T ss_pred             CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHH----HhCCCEeEEEecccccc
Confidence            456788999999999999999999999999999999999999987 5778887765333    334555554432     


Q ss_pred             ----------CCHHHHHHhhcCC---CeeEEEEeCCCCCC-CcccCH---HHHHHHHHhCCCEEEEECCCCC--------
Q 009523          274 ----------ADMEGLEAALNNN---NVSLFFTESPTNPF-LRCVDV---KLVSDLCHKKGAIVCIDGTFAT--------  328 (532)
Q Consensus       274 ----------~dle~Le~al~~~---~tklV~lesP~Npt-G~v~dl---~~I~~la~~~gi~lIvDet~a~--------  328 (532)
                                .|+++|++++++.   ++++|++++|+||+ |.+.++   ++|.++|++||++||.|++...        
T Consensus       126 ~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~  205 (431)
T cd00617         126 AQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKE  205 (431)
T ss_pred             cccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhc
Confidence                      3789999999862   38999999999998 888864   5789999999999999999321        


Q ss_pred             ---CCccccc-------ccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhh-----cCCCccHHHHHHHHH
Q 009523          329 ---PLNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----LGGALNPNAAYLIIR  392 (532)
Q Consensus       329 ---~~~~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~-----~G~~~~~~~a~l~l~  392 (532)
                         .+...+.       ....|.+..|++|..+.+   +||++++++ +++++++.....     ..+.++......+..
T Consensus       206 r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~  282 (431)
T cd00617         206 REEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQ  282 (431)
T ss_pred             ccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHH
Confidence               1111111       124789999999987765   489999986 588888753311     112233333333333


Q ss_pred             hHHHH--HHHHHHHHHHHHHHHHHHHhC
Q 009523          393 GMKTL--HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       393 ~l~tl--~~r~~~~~~~a~~la~~L~~~  418 (532)
                      +++..  ...+++..++++++.+.|++.
T Consensus       283 gL~e~~~~~~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         283 GLREAVEEDYLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            55332  244555666778899999876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK07505 hypothetical protein; Provisional

Probab=99.80  E-value=8.6e-17  Score=171.00  Aligned_cols=192  Identities=20%  Similarity=0.194  Sum_probs=135.9

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc----cCCC-EEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all----~~Gd-~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ++..+..++++++|+++.+. +.++++||++|+..++..+.    .+|+ .||+.+..|++.......... .+.++..+
T Consensus        87 ~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~  164 (402)
T PRK07505         87 RVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETI  164 (402)
T ss_pred             hhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEe
Confidence            35677889999999999998 88999999999988875432    2233 365666666664432222222 35678888


Q ss_pred             CCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC--------CCcccccc---cCCc
Q 009523          272 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--------PLNQKALS---LGAD  340 (532)
Q Consensus       272 d~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~--------~~~~~~l~---~gaD  340 (532)
                      +..|++++++++++ +++++++++|+||+|.+.|+++|.++|+++|+++|+||+++.        ++......   ....
T Consensus       165 ~~~d~~~l~~~~~~-~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~  243 (402)
T PRK07505        165 DHNDLDALEDICKT-NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERT  243 (402)
T ss_pred             CCCCHHHHHHHHhc-CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCe
Confidence            88999999999876 578899999999999999999999999999999999999732        11111111   1234


Q ss_pred             EEEECCccccCCCCCcEEEEEE-eChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMK  395 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv-~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~  395 (532)
                      +++.|++|.+++.    ||+++ +++++++.++....  .+++.+++..+..+...++
T Consensus       244 i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~  297 (402)
T PRK07505        244 IIAASLGKAFGAS----GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAE  297 (402)
T ss_pred             EEEEechhhhhcc----CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHH
Confidence            7778999999865    46765 47788887766433  2334455555555444444

>PLN02397 aspartate transaminase

Probab=99.79  E-value=4.3e-17  Score=174.56  Aligned_cols=214  Identities=15%  Similarity=0.157  Sum_probs=136.1

Q ss_pred             chhHHHHHHHHHhhhCCC-------c-E----EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          200 NPTTVVVEEKMSALEGAE-------S-T----VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~-------~-~----i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      .....+|++++++++...       + +    ++.++|+.++...+..++.|||+|++++|+|+....    .++..|.+
T Consensus        90 ~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~----~~~~~g~~  165 (423)
T PLN02397         90 IEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHN----IFRDAGVP  165 (423)
T ss_pred             cCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHH----HHHHcCCe
Confidence            345667888888876321       2 2    223444445555666666799999999999987553    34556777


Q ss_pred             EEEeCC-------CCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc--
Q 009523          268 ATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--  333 (532)
Q Consensus       268 v~~vd~-------~dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~--  333 (532)
                      +..++.       .|++.+++.++.  .+++++++++|+||||.+++   +++|+++|+++|+++|+||+|.......  
T Consensus       166 ~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~  245 (423)
T PLN02397        166 VRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLD  245 (423)
T ss_pred             EEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchh
Confidence            766642       268878777752  26899999999999999997   4567888899999999999986543211  


Q ss_pred             ----c---cc-cC-CcEEEECCccccCCCCCcEEEEEE---eChHHHHHH----HHHhhhcCCCccHHHHHHHHHhHHH-
Q 009523          334 ----A---LS-LG-ADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQI----RNLHHVLGGALNPNAAYLIIRGMKT-  396 (532)
Q Consensus       334 ----~---l~-~g-aDivv~S~sK~lgg~gd~~gG~lv---~~~~li~~l----~~~~~~~G~~~~~~~a~l~l~~l~t-  396 (532)
                          +   .. .+ ..+++.|+||.++..|. +.||++   +++++++.+    .........+.+...+.++...++. 
T Consensus       246 ~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~-RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~  324 (423)
T PLN02397        246 ADAQSVRMFVEDGHEILVAQSYAKNMGLYGE-RVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDP  324 (423)
T ss_pred             hhhHHHHHHHhcCCcEEEEEECcccCCCccc-cceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCH
Confidence                1   11 12 24889999999997664 567763   355555433    3333222223344444444333321 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhC
Q 009523          397 ---------LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       397 ---------l~~r~~~~~~~a~~la~~L~~~  418 (532)
                               +....++..++++.+.+.|+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        325 ELFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     2222334456677777888775

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.78  E-value=9.9e-17  Score=168.88  Aligned_cols=252  Identities=18%  Similarity=0.172  Sum_probs=166.2

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc-cCC-CEEEEcCCCCcchHHHHHHhccc------C---C
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRKTRIFIETVLPK------M---G  265 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all-~~G-d~VIv~~~~y~~t~~~~~~~l~~------~---G  265 (532)
                      ...++...+|.+.+++..+.+.+++++||++|+..+++... -+| ++|++.++.|++...........      +   .
T Consensus        67 ~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~  146 (377)
T PRK02936         67 LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLL  146 (377)
T ss_pred             ccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCC
Confidence            34567777888888887766788999999999999998532 244 67888888888643211111100      0   1


Q ss_pred             cEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc------cccc
Q 009523          266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QKAL  335 (532)
Q Consensus       266 v~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~------~~~l  335 (532)
                      ..+..++.+|++++++.+.+ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+||++.....      ....
T Consensus       147 ~~~~~~~~~d~~~l~~~~~~-~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~  225 (377)
T PRK02936        147 PGFTHVPFNDIKALKEVMNE-EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQF  225 (377)
T ss_pred             CCceEeCCCCHHHHHHhccC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhh
Confidence            13445666789999999986 6999999999998887643    89999999999999999999753211      1111


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAK  413 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~  413 (532)
                      ....|++  +++|.+++ | ..+|++++++++.+.+...........++..+..+...++.+.  ..+++..++.+++.+
T Consensus       226 ~~~~di~--t~sK~l~~-G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~  301 (377)
T PRK02936        226 GLDPDIV--TVAKGLGN-G-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQ  301 (377)
T ss_pred             CCCCcEE--EEcccccC-C-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            2234655  58999994 3 4678999999888877543222222356777777666666542  344555566777777


Q ss_pred             HHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009523          414 ILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP  474 (532)
Q Consensus       414 ~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~v  474 (532)
                      .|++.    +.+..+                  ++.|.+++++++..   ...+.+.+...++.+
T Consensus       302 ~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~~---~~~~~~~l~~~gv~v  345 (377)
T PRK02936        302 KLQEELEHLECVKNI------------------RGKGLMIGIECTEE---VAPVIEQLREEGLLV  345 (377)
T ss_pred             HHHHHHhhCCcEEeE------------------eecceEEEEEecch---HHHHHHHHHHCCeEE
Confidence            76652    222111                  23467899999743   445666655445433

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=2.9e-17  Score=168.94  Aligned_cols=290  Identities=17%  Similarity=0.209  Sum_probs=198.2

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhccC-----CCEEEEcCCCCcch-HHH--------H
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVPA-----GGHIVTTTDCYRKT-RIF--------I  257 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all~~-----Gd~VIv~~~~y~~t-~~~--------~  257 (532)
                      |.-.-|.++...+|.++|+++.+ .+.+++++||+||++.+++...+.     ..+||.....|++- ...        +
T Consensus        76 h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky  155 (404)
T COG4992          76 HVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKY  155 (404)
T ss_pred             hcccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhh
Confidence            44455788999999999999996 889999999999999999855322     23788888888872 110        1


Q ss_pred             HHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC----
Q 009523          258 ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----  329 (532)
Q Consensus       258 ~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~----  329 (532)
                      ...+...--.+++++.+|++++++++++ +|.+|++|......|.+.+    ++++.++|++||+++|.||++...    
T Consensus       156 ~~~F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG  234 (404)
T COG4992         156 RKGFGPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG  234 (404)
T ss_pred             ccCCCCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc
Confidence            1222222224667888999999999998 7999999999999998876    789999999999999999996431    


Q ss_pred             --CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH--HhhhcCCCccHHHHHHHHHhHHHHHH--HHHH
Q 009523          330 --LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLHL--RVQQ  403 (532)
Q Consensus       330 --~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~--~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~  403 (532)
                        +.......-.||++  +.|.+||+  ...|+++.++.+.+.+..  ....+|+  +|+++..+...++.+..  -+++
T Consensus       235 k~fA~e~~gV~PDI~t--laK~LgGG--~PigA~la~~~~~~~~~~G~HgSTfGG--NpLacAv~~a~l~~l~~e~ll~~  308 (404)
T COG4992         235 KLFAYEHYGVEPDILT--LAKALGGG--FPIGAMLATEEIASAFTPGDHGSTFGG--NPLACAVALAVLEVLLEEGLLEN  308 (404)
T ss_pred             hHHHHHHhCCCCCEEE--eeccccCC--ccceeeEEchhhhhcCCCCcccCCCCc--CHHHHHHHHHHHHHHcchhHHHH
Confidence              22333444568887  89999976  467777777544444332  2233443  68888877777776532  2333


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..+...++.+.|++..    ..||-          -+..+|.|.|+.+++.... .+..++..+...++-+...      
T Consensus       309 v~~~g~~~~~~L~~l~----~~~~~----------v~~vRG~GLmiGiel~~~~-~a~~~~~~~~~~gvL~~~a------  367 (404)
T COG4992         309 VREKGEYLLQRLRELK----RRYPL----------VKEVRGRGLMIGIELKEPY-RARDIVRALREEGVLVLPA------  367 (404)
T ss_pred             HHHHHHHHHHHHHHHh----hcCCc----------eeeeecceeEEEEEecCcc-cHHHHHHHHHHCCeEEecC------
Confidence            3344445555555431    11221          1234678999999997532 4566777776555433221      


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~~  531 (532)
                                           .++.|||.-.    .|+.++.++.|+++|+.
T Consensus       368 ---------------------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~  398 (404)
T COG4992         368 ---------------------GPNVIRFLPPLVITEEEIDEALDALERALAA  398 (404)
T ss_pred             ---------------------CCCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence                                 2457787654    47788888888888864

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.77  E-value=3.2e-16  Score=166.44  Aligned_cols=289  Identities=15%  Similarity=0.173  Sum_probs=183.4

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcchHHHHHHhc-------
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVL-------  261 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all--------~~Gd~VIv~~~~y~~t~~~~~~~l-------  261 (532)
                      .+.++...+|+++|+++.+.+.+++++||++|+..+++...        ...++||..+..|++........-       
T Consensus        73 ~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~  152 (397)
T TIGR03246        73 GYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ  152 (397)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence            35678889999999999988899999999999999998652        123568888888877432111110       


Q ss_pred             --ccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc-C---HHHHHHHHHhCCCEEEEECCCCCC------
Q 009523          262 --PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFATP------  329 (532)
Q Consensus       262 --~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~-d---l~~I~~la~~~gi~lIvDet~a~~------  329 (532)
                        ......+..++.+|++++++++.+ ++++|++|.++++.|.+. |   +++|.++|++||+++|+||++...      
T Consensus       153 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~  231 (397)
T TIGR03246       153 GFAPLPGGIKHAPYNDLAAAKALISD-KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGEL  231 (397)
T ss_pred             CCCCCCCceEEeCCCCHHHHHHHhcc-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccc
Confidence              011123456777899999999976 699999998777777554 2   889999999999999999996221      


Q ss_pred             CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHH
Q 009523          330 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  407 (532)
Q Consensus       330 ~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~  407 (532)
                      +........+|++  +++|.++++  ...|++++++++++.+...........+|..+..++..++.+.  ...++..++
T Consensus       232 ~a~~~~gv~pDi~--t~~K~lggG--~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  307 (397)
T TIGR03246       232 YAYMHYGVTPDIL--TSAKALGGG--FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQR  307 (397)
T ss_pred             hhhhhcCCCCCEE--EeehhhhCC--cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            1111222345766  589999743  4678888898888777532211111235665655555555432  233444556


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      .+++.+.|++...    .++..          ...+|.|.++.+++... ......|...|...++-+...         
T Consensus       308 ~~~l~~~L~~l~~----~~~~~----------~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------  364 (397)
T TIGR03246       308 HDLFVDGLEKINA----RYNVF----------SEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA---------  364 (397)
T ss_pred             HHHHHHHHHHHHh----cCCCe----------EeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec---------
Confidence            6666666665321    11110          11245678888888542 134566766665544332210         


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                        ..+.||++..+    ++.++.++.|++++.+
T Consensus       365 ------------------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       365 ------------------GPNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             ------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                              13689997654    4455666666666653

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.77  E-value=1.1e-16  Score=170.90  Aligned_cols=287  Identities=15%  Similarity=0.021  Sum_probs=186.9

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEE--eCCHHHHHHHHHHHhc----c----CC-----CEEEEcCCCCcchHHHHHHhc
Q 009523          201 PTTVVVEEKMSALEGAE----STVI--MASGMSASTVMLLALV----P----AG-----GHIVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~----~~i~--~sSG~~Ai~~al~all----~----~G-----d~VIv~~~~y~~t~~~~~~~l  261 (532)
                      ...++.++.+++++|.+    +.++  +++|++|+++++.+..    .    .|     .+|+++..+|.+....    +
T Consensus        80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka----~  155 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF----A  155 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH----H
Confidence            55666788999999975    3333  5788899999886542    1    12     3799999999886543    3


Q ss_pred             ccCCcEEEEeCC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC------CCEEEEECCCCCC
Q 009523          262 PKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATP  329 (532)
Q Consensus       262 ~~~Gv~v~~vd~------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~------gi~lIvDet~a~~  329 (532)
                      +..|++++.++.      .|+++|++++++ +|.+|.+...+|.+|.+.|+++|+++|+++      |+++++|.+|+.+
T Consensus       156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~-~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~  234 (431)
T TIGR01788       156 RYFDVELREVPMDPGRYVIDPEQVVEAVDE-NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGF  234 (431)
T ss_pred             HHcCceeEEEecCCCceeeCHHHHHHHHhh-CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHH
Confidence            445666666543      278999999987 699999999999999999999999999999      9999999998842


Q ss_pred             C--------cccccccCCcEEEECCcccc-CCCCCcEEEEEEeChH--HHHHHHHHhhhcC----------CCc--cHHH
Q 009523          330 L--------NQKALSLGADLVLHSATKFI-GGHNDVLAGSISGSGK--LVTQIRNLHHVLG----------GAL--NPNA  386 (532)
Q Consensus       330 ~--------~~~~l~~gaDivv~S~sK~l-gg~gd~~gG~lv~~~~--li~~l~~~~~~~G----------~~~--~~~~  386 (532)
                      .        ..+....++|.+..|.||++ ++.+   .|+++.+++  +.+.+.......+          +..  ....
T Consensus       235 ~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g---~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~  311 (431)
T TIGR01788       235 IAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG---VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIA  311 (431)
T ss_pred             HHHHhCCCchhhcCCCCceEEEECchhccCCCCC---cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHH
Confidence            1        11212357899999999988 6554   576665543  2222211000111          111  1223


Q ss_pred             HHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHH
Q 009523          387 AYLIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATI  461 (532)
Q Consensus       387 a~l~l~~--l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~~~~  461 (532)
                      .|+.++.  ...+...+++..+.++++.+.|++.|.++-+. |.    |           ..++++|.+++.   .....
T Consensus       312 ~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~-~~----~-----------~~~iV~Fr~~~~~~~~~~~~  375 (431)
T TIGR01788       312 QYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIIS-DG----S-----------GIPLVAFKLKDDADPGYTLY  375 (431)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-CC----C-----------CceEEEEEeCCCCCCCcCHH
Confidence            4554433  33456667788889999999999988765442 21    1           246899998751   12334


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCC-CCeEEEEec----CCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM-DNLVRFSFG----VEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~-~~~IRlSvG----~ed~~dli~dL~~AL~~l  532 (532)
                      .+.+.|...++.++.=      ..|.               ++. .-.+|+++-    .+..+++++||..++..+
T Consensus       376 ~l~~~L~~~G~~~~~~------~~p~---------------~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       376 DLSHRLRERGWIVPAY------TLPK---------------NAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHHHHCCCcccCC------CCCC---------------ccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            5556665444332110      0111               111 236899884    356788888888887653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.77  E-value=1.4e-17  Score=153.45  Aligned_cols=156  Identities=23%  Similarity=0.271  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCC-----
Q 009523          203 TVVVEEKMSALE--GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-----  275 (532)
Q Consensus       203 ~~~Le~~lA~l~--ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~d-----  275 (532)
                      .+++++.+++++  +.+.++++++|++|+.++++++.++|++|+++++.|++...   ..+...|.++..++.++     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~   78 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG   78 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence            468999999999  77889999999999999999998889999999999998763   23456688888776431     


Q ss_pred             H--HHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc----cccccCCcEEEECCccc
Q 009523          276 M--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGADLVLHSATKF  349 (532)
Q Consensus       276 l--e~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~----~~l~~gaDivv~S~sK~  349 (532)
                      .  +.+++.....+++++++++++|++|...|+++|.++|+++|+++|+|+++..+...    .+...++|+++.|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~  158 (170)
T cd01494          79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN  158 (170)
T ss_pred             hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence            1  24544443347999999999999999999999999999999999999997765433    35567899999999999


Q ss_pred             cCCCCCcEEEEEEeC
Q 009523          350 IGGHNDVLAGSISGS  364 (532)
Q Consensus       350 lgg~gd~~gG~lv~~  364 (532)
                      +++.+   +|+++.+
T Consensus       159 ~~~~~---~G~l~~~  170 (170)
T cd01494         159 LGGEG---GGVVIVK  170 (170)
T ss_pred             cCCCc---eEEEEeC
Confidence            99854   7888753

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.77  E-value=2.9e-16  Score=167.01  Aligned_cols=285  Identities=14%  Similarity=0.198  Sum_probs=182.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcchHHHH-H--------Hhc
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFI-E--------TVL  261 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all--------~~Gd~VIv~~~~y~~t~~~~-~--------~~l  261 (532)
                      .++...+|+++|+++.+.+.+++++||++|+..+++...        ...+.|+..+..|++..... .        ..+
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~  159 (403)
T PRK05093         80 TNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGF  159 (403)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcC
Confidence            456678999999999887899999999999999988541        12356888888887743211 1        111


Q ss_pred             ccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc-C----HHHHHHHHHhCCCEEEEECCCCCCCc-cc--
Q 009523          262 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D----VKLVSDLCHKKGAIVCIDGTFATPLN-QK--  333 (532)
Q Consensus       262 ~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~-d----l~~I~~la~~~gi~lIvDet~a~~~~-~~--  333 (532)
                      ......+..++.+|++++++.+.+ ++++|++| |.||+|.+. +    +++|.++|++||+++|+||++..... -.  
T Consensus       160 ~~~~~~~~~~~~~d~~~l~~~l~~-~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~  237 (403)
T PRK05093        160 GPKPADITHVPFNDLAAVKAVIDD-HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF  237 (403)
T ss_pred             CCCCCCcEEeCCCCHHHHHHHhcC-CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch
Confidence            112234566788899999999976 69999998 666666554 3    88999999999999999999763211 11  


Q ss_pred             ---ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHH
Q 009523          334 ---ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTA  408 (532)
Q Consensus       334 ---~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a  408 (532)
                         ......|+  .|++|.+++ | ...|++++++++++.+...........++..++.+...++.+.  ...++..++.
T Consensus       238 ~~~~~~~~pdi--~s~sK~l~~-G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~  313 (403)
T PRK05093        238 AYMHYGVTPDI--LTSAKALGG-G-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARR  313 (403)
T ss_pred             hhhhcCCCCCE--EEecccccC-C-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence               11223454  578999994 3 5789999999988877643222222346666666666555432  2344555666


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      +.+.+.|++...    .++..          ...++.|.+++++++.+. ....+|.+.+...++.+..+          
T Consensus       314 ~~l~~~L~~~~~----~~~~~----------~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~----------  369 (403)
T PRK05093        314 QRFVDGLQKINQ----KYGVF----------SEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVA----------  369 (403)
T ss_pred             HHHHHHHHHHHh----hCCCe----------EeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecC----------
Confidence            777777766421    01100          011245778999986431 24556776665445443321          


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                                       ..+.|||++...    +.++.++.|.++++
T Consensus       370 -----------------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~  399 (403)
T PRK05093        370 -----------------GPDVLRFAPSLVIEEADIDEGLARFEKAVA  399 (403)
T ss_pred             -----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence                             136899987664    34445555555554

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.77  E-value=1e-16  Score=174.13  Aligned_cols=165  Identities=15%  Similarity=0.234  Sum_probs=123.8

Q ss_pred             hhHHHHHHHHHhhhCCCcE-EEeCCHHHHHHHH---HH-HhccCCC----EEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSALEGAEST-VIMASGMSASTVM---LL-ALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~-i~~sSG~~Ai~~a---l~-all~~Gd----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ....++++.+++++|.+.+ +..++|+.+....   +. .+.++||    +|+++++.|+.+...    +...|++++.+
T Consensus       113 el~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~----~~~~G~~vv~v  188 (481)
T PRK04366        113 ELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPAS----AAMAGFKVVEI  188 (481)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHH----HHHcCCEEEEe
Confidence            3456678999999998654 4446676443322   22 3456776    999999999876643    45578888887


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCCC-C-cccccccCCcEEE
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-L-NQKALSLGADLVL  343 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~~-~-~~~~l~~gaDivv  343 (532)
                      +.     .|+++|++++++ +|++|++++|+ |+|.+ .|+++|+++||++|++++||+++... + ..++.++|+|+++
T Consensus       189 ~~~~~~~~D~e~L~~~i~~-~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~  266 (481)
T PRK04366        189 PSNEDGLVDLEALKAAVGE-DTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVH  266 (481)
T ss_pred             ecCCCCCcCHHHHHhhccc-CCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEE
Confidence            64     378999999987 69999999988 99987 58999999999999999999997532 1 2367788999999


Q ss_pred             ECCccccCCC---CCcEEEEEEeChHHHHHH
Q 009523          344 HSATKFIGGH---NDVLAGSISGSGKLVTQI  371 (532)
Q Consensus       344 ~S~sK~lgg~---gd~~gG~lv~~~~li~~l  371 (532)
                      .|.||+++++   |..-+|+++.++++.+.+
T Consensus       267 ~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l  297 (481)
T PRK04366        267 LNLHKTFSTPHGGGGPGSGPVGVKEELAPFL  297 (481)
T ss_pred             EechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence            9999998744   112367888877766654

>PLN03032 serine decarboxylase; Provisional

Probab=99.76  E-value=2.3e-16  Score=165.40  Aligned_cols=225  Identities=17%  Similarity=0.143  Sum_probs=164.9

Q ss_pred             hcccCCCCCCCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh
Q 009523          187 EKRRASFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV  260 (532)
Q Consensus       187 ~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~--~--~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~  260 (532)
                      +++...|.|++......+++++.+++++|.+  +  .+++++|++|+..++....  .++++|+++...|.+.....   
T Consensus        52 gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa---  128 (374)
T PLN03032         52 GDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA---  128 (374)
T ss_pred             CCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHH---
Confidence            4455667888888888889999999999973  3  4888899999988887543  35679999999999876543   


Q ss_pred             cccCCcEEEEeC--C---CCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-----CEEEEECCCCC
Q 009523          261 LPKMGITATVID--P---ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-----AIVCIDGTFAT  328 (532)
Q Consensus       261 l~~~Gv~v~~vd--~---~dle~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~g-----i~lIvDet~a~  328 (532)
                       +.+|+.++.++  .   .|+++|+++++++  +|.+|++...+|++|.+.|+++|+++|+++|     +++++|.+++.
T Consensus       129 -~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg  207 (374)
T PLN03032        129 -RMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFG  207 (374)
T ss_pred             -HHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchh
Confidence             33344444443  2   3899999999753  4778888889999999999999999999996     58999999865


Q ss_pred             CC-ccc------ccccCCcEEEECCccccC-CCCCcEEEEEEeChHHHHHHHHHh--------hhcCCCc--cHHHHHHH
Q 009523          329 PL-NQK------ALSLGADLVLHSATKFIG-GHNDVLAGSISGSGKLVTQIRNLH--------HVLGGAL--NPNAAYLI  390 (532)
Q Consensus       329 ~~-~~~------~l~~gaDivv~S~sK~lg-g~gd~~gG~lv~~~~li~~l~~~~--------~~~G~~~--~~~~a~l~  390 (532)
                      +. ++.      ....++|.++.|.||+++ |.+   .|+++.+++.++.+....        ...|+..  .....|..
T Consensus       208 ~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g---~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~  284 (374)
T PLN03032        208 LMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMP---CGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYT  284 (374)
T ss_pred             hhhhccCCCcccCCCcCCcEEEECcccccCCCcC---eEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHH
Confidence            42 210      123479999999999999 554   677777766665443211        1223322  24556655


Q ss_pred             HH--hHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          391 IR--GMKTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       391 l~--~l~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ++  |.+.+..++++..++++++.+.|++.
T Consensus       285 l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        285 LRRKGYRGIKRDVQHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44  55667788889999999999999875

>PRK02769 histidine decarboxylase; Provisional

Probab=99.76  E-value=2.4e-16  Score=166.00  Aligned_cols=235  Identities=17%  Similarity=0.144  Sum_probs=160.9

Q ss_pred             ccCCCCCCCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcc
Q 009523          189 RRASFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       189 ~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~--~--~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      ....+.|++......+++.+.+|+++|.+  +  .+++++|++++..++...  +.++++|++++.+|.+....++ .+.
T Consensus        53 p~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~-~lg  131 (380)
T PRK02769         53 PYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIAR-LLR  131 (380)
T ss_pred             ccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHH-HcC
Confidence            33455666666666777888899999974  3  477788889987776543  3578999999999999765542 232


Q ss_pred             cCCcEEEEeC--CCCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCC---CEEEEECCCCCCCc----
Q 009523          263 KMGITATVID--PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG---AIVCIDGTFATPLN----  331 (532)
Q Consensus       263 ~~Gv~v~~vd--~~dle~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~g---i~lIvDet~a~~~~----  331 (532)
                      ..+..+...+  ..|+++|+++++++  +|.+|++..++|++|.+.|+++|+++|+++|   ++++||.+++.+..    
T Consensus       132 ~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~  211 (380)
T PRK02769        132 IKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVN  211 (380)
T ss_pred             CCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccC
Confidence            2222222221  13899999999763  3899999999999999999999999999998   69999999876432    


Q ss_pred             ----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--------hhcCCC--ccHHHHHHHHHhH--H
Q 009523          332 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--------HVLGGA--LNPNAAYLIIRGM--K  395 (532)
Q Consensus       332 ----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--------~~~G~~--~~~~~a~l~l~~l--~  395 (532)
                          ++... ++|.++.|.||+++++.  ..|+++.+++..+.+....        ...|+.  ......|.+++.+  +
T Consensus       212 ~~~~~d~~~-~vDsis~s~HK~~~~P~--g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~  288 (380)
T PRK02769        212 NPPPFSFAD-GIDSIAISGHKFIGSPM--PCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSK  288 (380)
T ss_pred             ccccCCccC-CCCEEEECCcccCCCCC--CcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHH
Confidence                22223 89999999999998443  2677777776665542110        112222  1234455554433  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCC
Q 009523          396 TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG  428 (532)
Q Consensus       396 tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pg  428 (532)
                      .+..+.++..+.++++.+.|++. ++..+..|.
T Consensus       289 G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~  320 (380)
T PRK02769        289 GLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPN  320 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCC
Confidence            45566677778889999988764 555454443

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.76  E-value=6.5e-16  Score=164.58  Aligned_cols=287  Identities=14%  Similarity=0.148  Sum_probs=183.1

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcchHHHHHHhcc------
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLP------  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all--------~~Gd~VIv~~~~y~~t~~~~~~~l~------  262 (532)
                      .+.++...+|+++|+++.+.+.+++++||++|+..+++...        ....+|+..+..|++.......+-.      
T Consensus        77 ~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~  156 (406)
T PRK12381         77 GYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ  156 (406)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence            45677788999999999888889999999999999998642        1346788889989885422111100      


Q ss_pred             ---cCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc-----CHHHHHHHHHhCCCEEEEECCCCCC-C---
Q 009523          263 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATP-L---  330 (532)
Q Consensus       263 ---~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~-----dl~~I~~la~~~gi~lIvDet~a~~-~---  330 (532)
                         ..-..+..++..|++++++.+++ ++++|++| |.|++|-+.     .+++|.++|++||+++|+||++... .   
T Consensus       157 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~  234 (406)
T PRK12381        157 DFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE  234 (406)
T ss_pred             CCCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc
Confidence               00012345566789999999976 69999996 677877643     2789999999999999999996321 1   


Q ss_pred             --cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHH
Q 009523          331 --NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  406 (532)
Q Consensus       331 --~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~  406 (532)
                        .........|+  .|++|.++++  ...|++++++++++.+...........+|..+..+...++.+.  ..+++..+
T Consensus       235 ~~~~~~~~v~pDi--~t~sK~l~gG--~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~  310 (406)
T PRK12381        235 LYAYMHYGVTPDV--LTTAKALGGG--FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQ  310 (406)
T ss_pred             hhhhHhhCCCCCE--EEehhhhhCC--CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHH
Confidence              11112233565  4789999853  4678888999888877543222222346776666666555543  23344445


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCccccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      +.+++.+.|++...    .++..          ...++.|.+++++++... .....+.+.+...++.+...        
T Consensus       311 ~~~~l~~~L~~l~~----~~~~~----------~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~--------  368 (406)
T PRK12381        311 RHDWFVERLNTINA----RYGLF----------SEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA--------  368 (406)
T ss_pred             HHHHHHHHHHHHHh----hCCCE----------EEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC--------
Confidence            56666666655310    01110          111356889999986431 24456666666555443211        


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                                         .++.|||++.+    ++.++.++.|+++|+
T Consensus       369 -------------------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~  398 (406)
T PRK12381        369 -------------------GPNVVRFAPALNISEEEITTGLDRFARACE  398 (406)
T ss_pred             -------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence                               13579998876    334555566666654

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.76  E-value=9.3e-16  Score=163.03  Aligned_cols=258  Identities=19%  Similarity=0.200  Sum_probs=169.1

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---------cC-CCEEEEcCCCCcch-HHHHHHhc-----
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PA-GGHIVTTTDCYRKT-RIFIETVL-----  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all---------~~-Gd~VIv~~~~y~~t-~~~~~~~l-----  261 (532)
                      +..+...+|+++|+++.|.+.+++++||++|+..+++.+.         .+ .++|+..+..|++. ...+...-     
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~  155 (401)
T TIGR01885        76 FYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSR  155 (401)
T ss_pred             cCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccc
Confidence            3567889999999999998889999999999999998642         13 35788888888863 33221100     


Q ss_pred             ccCC---cEEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC---
Q 009523          262 PKMG---ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  329 (532)
Q Consensus       262 ~~~G---v~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~---  329 (532)
                      ..++   ..+..++..|+++|+++++.  .++.+|++|.+.+++|.+.|    +++|.++|++||+++|+||++...   
T Consensus       156 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~  235 (401)
T TIGR01885       156 TNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRT  235 (401)
T ss_pred             cccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence            0122   23455677789999998852  25889999999999999987    899999999999999999996321   


Q ss_pred             ---CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHH
Q 009523          330 ---LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQ  404 (532)
Q Consensus       330 ---~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~  404 (532)
                         +.........|+++  ++|.+++++ ...|++++++++++.++..........+|..+..+...++.+..  ..++.
T Consensus       236 G~~~~~~~~~~~~di~~--~gK~l~~g~-~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~  312 (401)
T TIGR01885       236 GKLLCVDHENVKPDIVL--LGKALSGGV-YPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENA  312 (401)
T ss_pred             chhhHHhhcCCCCCEEE--eeccccCCC-CCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence               01112234578776  569998643 24677888888888775422211112346666666666665542  22344


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHHcCCCceee
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDALKIPYIAP  474 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--~~~~~~l~~L~~~~i~v  474 (532)
                      .+..+++.+.|++.+.      + +.         ...+|.|.|+.++++.+.  .....+.+.|...++.+
T Consensus       313 ~~~~~~~~~~L~~l~~------~-~~---------~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v  368 (401)
T TIGR01885       313 EKLGEIFRDQLKKLPK------P-II---------TEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLA  368 (401)
T ss_pred             HHHHHHHHHHHHhccC------C-ce---------eEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEE
Confidence            4555666666665421      1 00         011346788888886431  24567777776555544

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PLN02624 ornithine-delta-aminotransferase

Probab=99.76  E-value=7.7e-16  Score=167.00  Aligned_cols=293  Identities=14%  Similarity=0.194  Sum_probs=182.7

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------CCC-EEEEcCCCCcchHHHHHHhc---
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AGG-HIVTTTDCYRKTRIFIETVL---  261 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~---------~Gd-~VIv~~~~y~~t~~~~~~~l---  261 (532)
                      ..++.++...+|+++|+++.+.+.+++++||++|+..+++....         ++. .|+.....|++........-   
T Consensus       111 ~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~  190 (474)
T PLN02624        111 SRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDN  190 (474)
T ss_pred             ccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCc
Confidence            33567888899999999999888899999999999999874322         133 57777777877421110110   


Q ss_pred             ---c---cCCcEEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC
Q 009523          262 ---P---KMGITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       262 ---~---~~Gv~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~  329 (532)
                         .   .....+.+++..|++.|++.++.  .++++|++|+++|++|.+.|    +++|.++|++||+++|+||++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~  270 (474)
T PLN02624        191 EATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL  270 (474)
T ss_pred             cccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence               0   01112445677789999998853  36899999999999999988    999999999999999999997531


Q ss_pred             ------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HH
Q 009523          330 ------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RV  401 (532)
Q Consensus       330 ------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~  401 (532)
                            +..+......|+++  ++|.+++++ ...|++++++++++.+...........++..+..+...++.+..  ..
T Consensus       271 GrtG~~~a~~~~~i~pDiv~--lsK~lggG~-~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~  347 (474)
T PLN02624        271 ARTGKMLACDWEEVRPDVVI--LGKALGGGV-IPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLA  347 (474)
T ss_pred             CcCcchhhHHhcCCCCCEEE--ecccccCCC-CcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHH
Confidence                  11111233467777  679998654 34677778888777664322111112466666666666665432  12


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHHHHHHHcCCCceeecCCC
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATIKFIDALKIPYIAPSFGG  478 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~~~~~~l~~L~~~~i~vs~G~  478 (532)
                      ++..+..+.+.+.|++...    .+|..         ....+|.|.++.++++..   ...+..+.+.|...++.+..+ 
T Consensus       348 ~~~~~~~~~l~~~L~~l~~----~~~~~---------i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~-  413 (474)
T PLN02624        348 ERSAKLGQELRDQLQKIQK----QFPKL---------IKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPT-  413 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hCCCc---------eEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecC-
Confidence            2223333444444443100    01100         001134678888888532   234566777766555544321 


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                                                ..+.|||+..+    ++.+++++.|+++|+
T Consensus       414 --------------------------~~~~lR~~p~l~~t~e~id~~l~~L~~~l~  443 (474)
T PLN02624        414 --------------------------HDTIIRLAPPLSISEDELQECSKALSDVLE  443 (474)
T ss_pred             --------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence                                      14679998654    445555666655554

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.74  E-value=5.9e-16  Score=165.49  Aligned_cols=290  Identities=17%  Similarity=0.151  Sum_probs=184.2

Q ss_pred             CchhHHHH----HHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccC-------------------------------CCE
Q 009523          199 GNPTTVVV----EEKMSALEGAEST-VIMASGMSASTVMLLALVPA-------------------------------GGH  242 (532)
Q Consensus       199 ~~p~~~~L----e~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~-------------------------------Gd~  242 (532)
                      ++...+.+    .++..+++|++.+ +-.-||+.|+..++.++++|                               ||+
T Consensus        89 g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~  168 (493)
T PRK13580         89 GCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQR  168 (493)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCE
Confidence            34444444    4566678898764 56679999999999999987                               899


Q ss_pred             EEEcCCCCcchHHH------HHH--hcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHH
Q 009523          243 IVTTTDCYRKTRIF------IET--VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH  314 (532)
Q Consensus       243 VIv~~~~y~~t~~~------~~~--~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~  314 (532)
                      |+..+..+++....      ...  ....+|++.. -...|.+++++.+++ ++++|++...+|. +...|+++|.++|+
T Consensus       169 i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~~~~~-~~plvii~g~S~~-~~~~dl~~i~eia~  245 (493)
T PRK13580        169 LLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAALARE-FKPLILVAGYSAY-PRRVNFAKLREIAD  245 (493)
T ss_pred             EEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccCHHHHHHHHhh-cCCEEEEeCcccc-CCCcCHHHHHHHHH
Confidence            99998888764211      000  0111222200 012389999999988 5677777788877 55889999999999


Q ss_pred             hCCCEEEEECCCCCCCcc--------cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-hhcCCCccHH
Q 009523          315 KKGAIVCIDGTFATPLNQ--------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGALNPN  385 (532)
Q Consensus       315 ~~gi~lIvDet~a~~~~~--------~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-~~~G~~~~~~  385 (532)
                      ++|+++++|++++.++..        .+. .++|+++.|+||++.|+.   ||++++++++++.+.... ..+|+.+.+.
T Consensus       246 ~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P~i~gg~l~p~  321 (493)
T PRK13580        246 EVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCPLVLGGPLPHV  321 (493)
T ss_pred             HcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCCcccCCCccHH
Confidence            999999999997665321        232 378999999999996553   799999999888885332 3456666665


Q ss_pred             HHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          386 AAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       386 ~a~l~l~~l~t----l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      .+..+....+.    ...+.++..+|++.|++.|.+... . +...+-+               ..++.+.+.+......
T Consensus       322 iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~-~-vv~ggTd---------------shIV~V~lg~~~~~g~  384 (493)
T PRK13580        322 MAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGA-R-LVTGGTD---------------NHLVLIDVTSFGLTGR  384 (493)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCC-C-ccCCCCC---------------CCEEEEEeCCHHHHHH
Confidence            44443332222    134677888999999999987531 1 1111111               3488998864322333


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcC-CCCCeEEEEecC--------CCHHHHHHHHHHHHh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG-IMDNLVRFSFGV--------EDFEDLKADVLQALH  530 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~g-i~~~~IRlSvG~--------ed~~dli~dL~~AL~  530 (532)
                      .+.+.|...+|-++.      +..|...            .| .....|||++..        ++.+.+.+.|.++++
T Consensus       385 ~a~~~L~e~GI~vn~------i~~Ptvp------------~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~  444 (493)
T PRK13580        385 QAESALLDAGIVTNR------NSIPSDP------------NGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             HHHHHHHHCCeEEcc------ccCCCCC------------CCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence            444456555655442      1223210            01 124579998764        445555666655553

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.74  E-value=2.5e-15  Score=155.84  Aligned_cols=215  Identities=18%  Similarity=0.224  Sum_probs=162.0

Q ss_pred             hhHHHHHHHHHhhhCCC--cE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          201 PTTVVVEEKMSALEGAE--ST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      ....++.+.|..+++.+  ++ ++.+||+.+++.++..+++|||+|++......+.+  +.+.++++|.+++.++.    
T Consensus        38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~  115 (383)
T COG0075          38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGE  115 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCC
Confidence            34566777888888875  44 45589999999999999999999999887766643  56788999999888864    


Q ss_pred             -CCHHHHHHhhcCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCC-CCCcccccccCCcEEEECCcccc
Q 009523          274 -ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 -~dle~Le~al~~~-~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a-~~~~~~~l~~gaDivv~S~sK~l  350 (532)
                       .|+++++++|+++ +.++|.+.+.-..||...|+++|+++|++||+++|||.+-+ .....++.++|+|+++.+..|.+
T Consensus       116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l  195 (383)
T COG0075         116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL  195 (383)
T ss_pred             CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence             3899999999842 57788887766789999999999999999999999999955 34567788899999999999999


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHH------------hhhc---C---CCccHHHHHHHHHhHH-----HHHHHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNL------------HHVL---G---GALNPNAAYLIIRGMK-----TLHLRVQQQNST  407 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~------------~~~~---G---~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~  407 (532)
                      +++.+  .|++..+++.++.+...            ...+   +   .+++....+.+..+++     -++.|.++|..+
T Consensus       196 ~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~  273 (383)
T COG0075         196 GAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRL  273 (383)
T ss_pred             cCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            97763  57777776655544321            1111   2   2222233333333333     257788999999


Q ss_pred             HHHHHHHHHhCC
Q 009523          408 ALRMAKILEAHP  419 (532)
Q Consensus       408 a~~la~~L~~~p  419 (532)
                      ++.+.+.+++..
T Consensus       274 ~~a~r~~~~alG  285 (383)
T COG0075         274 AEALRAGLEALG  285 (383)
T ss_pred             HHHHHHHHHHcC
Confidence            999999998763

>PLN00144 acetylornithine transaminase

Probab=99.73  E-value=1.9e-15  Score=159.65  Aligned_cols=283  Identities=16%  Similarity=0.175  Sum_probs=178.2

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc---------C------CCEEEEcCCCCcchHHHHHHhc-
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------A------GGHIVTTTDCYRKTRIFIETVL-  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~---------~------Gd~VIv~~~~y~~t~~~~~~~l-  261 (532)
                      +.++...+|.++|+++.+.+.+++++||++|+..+++....         +      ..+||.-...|++........- 
T Consensus        54 ~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~  133 (382)
T PLN00144         54 YHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTS  133 (382)
T ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCC
Confidence            45777888999999887777889999999999999874421         0      2468888888888432211110 


Q ss_pred             --------ccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC
Q 009523          262 --------PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       262 --------~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~  329 (532)
                              ...-..+.+++..|++++++.+..+++++|++|..+||.|...+    +++|.++|++||+++|+||++...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~  213 (382)
T PLN00144        134 KEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGL  213 (382)
T ss_pred             CccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence                    00011245667778999999987557999999988899555432    789999999999999999996532


Q ss_pred             C------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HH
Q 009523          330 L------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RV  401 (532)
Q Consensus       330 ~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~  401 (532)
                      .      ..+......|  +.+++|.++++  ...|++++++++++.+...........+|..+.++...++.+..  ..
T Consensus       214 gr~g~~~~~~~~~~~PD--i~t~sK~l~~G--~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~  289 (382)
T PLN00144        214 GRTGYLWAHEAYGVEPD--IMTLAKPLAGG--LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFL  289 (382)
T ss_pred             CccchHhhhhhcCCCCC--EEEecccccCC--cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHH
Confidence            1      1112233467  45589999865  47899999998888775422222233467776666655554421  11


Q ss_pred             HHHHHHHHHHHH----HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009523          402 QQQNSTALRMAK----ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       402 ~~~~~~a~~la~----~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      ++..+..+++.+    .+.++|.+..|                  +|.|.++|+++..   ....+...+...++.+..+
T Consensus       290 ~~~~~~g~~l~~~l~~~~~~~~~~~~v------------------rg~G~~~~l~l~~---~~~~~~~~~~~~Gv~i~~~  348 (382)
T PLN00144        290 ASVAKKGEYLRELLRRKLGGNPHVKEV------------------RGVGLLVGIQLDV---PAGPLVDACRDSGLLVLTA  348 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceee------------------ecCceEEEEEecC---ccHHHHHHHHHCCeEEeec
Confidence            222222233333    33333332222                  3568899999942   2345666655555444322


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                               + ..+.|||+.++    ++.++.++.|+++|.+
T Consensus       349 -------------------------~-~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        349 -------------------------G-KGDVVRLVPPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             -------------------------C-CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence                                     0 13689999987    3445555666666653

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.73  E-value=1.7e-15  Score=163.92  Aligned_cols=224  Identities=17%  Similarity=0.105  Sum_probs=144.5

Q ss_pred             CCCCCCC--CchhHHHHHH----HHHhhhCCC-cEEEe----CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHH--HH
Q 009523          192 SFEYGRY--GNPTTVVVEE----KMSALEGAE-STVIM----ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF--IE  258 (532)
Q Consensus       192 ~~~Y~R~--~~p~~~~Le~----~lA~l~ga~-~~i~~----sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~--~~  258 (532)
                      +|.-.||  |+...+++|+    +..++++++ ..+.+    .||+.|+..++.++++|||+|+..+...++....  ..
T Consensus        65 G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~  144 (475)
T PLN03226         65 GLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQT  144 (475)
T ss_pred             CCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhh
Confidence            3444554  5567777765    455667764 34444    8999999999999999999999966544443211  11


Q ss_pred             Hh--cccCCcEEE--EeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC
Q 009523          259 TV--LPKMGITAT--VIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       259 ~~--l~~~Gv~v~--~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~  328 (532)
                      ..  +...+..+.  .+..+      |+++|++++...++++|++ ..++ ++...|+++|.++|+++|+++++|+++..
T Consensus       145 ~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~-~~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~  222 (475)
T PLN03226        145 DGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIA-GASA-YPRDWDYARMRKIADKVGALLMCDMAHIS  222 (475)
T ss_pred             cccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEE-ecCc-CCCccCHHHHHHHHHHcCCEEEEEchhhh
Confidence            11  111222211  22222      8999999887556887766 3333 78889999999999999999999999765


Q ss_pred             CCc-----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHH-----------H---HHHHH-hhhcCCCccHHHHH
Q 009523          329 PLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-----------T---QIRNL-HHVLGGALNPNAAY  388 (532)
Q Consensus       329 ~~~-----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li-----------~---~l~~~-~~~~G~~~~~~~a~  388 (532)
                      ++.     ..+.. ++|+++.|+||++.|+.   ||+++++++++           +   .+... ...+.+.+++...+
T Consensus       223 Gli~~~~~~~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~ia  298 (475)
T PLN03226        223 GLVAAQEAASPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIA  298 (475)
T ss_pred             CcccCCCCCCCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHH
Confidence            532     12333 69999999999996663   68888776543           1   11111 11233334555444


Q ss_pred             HHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          389 LIIRGMKTL-----HLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       389 l~l~~l~tl-----~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                      .+..+++.+     ....++..+|++++++.|.+ .++.
T Consensus       299 al~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~  336 (475)
T PLN03226        299 ALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYK  336 (475)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCE
Confidence            444455543     23567777999999999987 3443

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=4.5e-16  Score=149.54  Aligned_cols=289  Identities=14%  Similarity=0.155  Sum_probs=193.1

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          197 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~-~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      +|++|...++..+++.--+- .+.+.++-|+ +.|.++++..+.|| ++|+...|+|+-.    .--+...+++|+.++.
T Consensus        65 ~~~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY----~v~A~iNd~eVvkvpl  140 (375)
T KOG0633|consen   65 VYPDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMY----VVDAAINDAEVVKVPL  140 (375)
T ss_pred             ccCCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeE----EEEeecCCceEEEecC
Confidence            44555566666666654332 4678889998 99999999999999 8999999999642    1224566888888764


Q ss_pred             C-----CHHHHHHhhcCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhC-CCEEEEECCCCCCCc-ccc----cccCCcE
Q 009523          274 A-----DMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLN-QKA----LSLGADL  341 (532)
Q Consensus       274 ~-----dle~Le~al~~~-~tklV~lesP~NptG~v~dl~~I~~la~~~-gi~lIvDet~a~~~~-~~~----l~~gaDi  341 (532)
                      +     |.+++.+.++.. ++|++|+++|+||||.+...+.|.++.+.. |.++|+||+|..+.. ...    .+...-+
T Consensus       141 ~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLi  220 (375)
T KOG0633|consen  141 NPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLI  220 (375)
T ss_pred             CCCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCcee
Confidence            3     788888887643 699999999999999999999999988764 789999999755432 111    1223347


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP-NAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~-~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ++.++||.+|-.| ++.|+-+.+..+++.+......+.-.... ..+..++.  .++.++.-.....+...+|...|.+.
T Consensus       221 vlqTlSKsfGLAG-iRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v  299 (375)
T KOG0633|consen  221 VLQTLSKSFGLAG-IRVGYGAFPLSIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEV  299 (375)
T ss_pred             ehhhhhhhcCcce-eEeecccccHHHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8899999998554 44566666778888877766655432222 22222222  34555555566667788888888887


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHH-HHHHcCCCceeecCCCcccccccCccccccCCCH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIK-FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ  496 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~-~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~  496 (532)
                      |.+..  |||-              ...+++-+++.++. ..+++ +.+.+...++-|.+-+.+-     .         
T Consensus       300 ~~~~~--~~gg--------------~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~-----~---------  349 (375)
T KOG0633|consen  300 PFLND--YPGG--------------SDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEE-----G---------  349 (375)
T ss_pred             ccccC--CCCc--------------ccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCcc-----c---------
Confidence            76654  4431              13567888887542 23333 3444445555555543321     1         


Q ss_pred             HHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHH
Q 009523          497 SERLKYGIMDNLVRFSFGVE-DFEDLKADVLQA  528 (532)
Q Consensus       497 ~~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~A  528 (532)
                              -.|.+|+++|.+ +..-+++-|++.
T Consensus       350 --------c~G~lRitvGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  350 --------CKGYLRITVGTPEENTVLMKCLKQF  374 (375)
T ss_pred             --------cceeEEEEcCCcccchHHHHHHHhh
Confidence                    258999999974 455666666654

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.73  E-value=1.2e-17  Score=169.48  Aligned_cols=218  Identities=23%  Similarity=0.298  Sum_probs=156.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      .++.+.+|++++++++|.+.++++.+|+.|+.++++++++|++.||+..+.|.-+.+.- ......|.++..++.     
T Consensus        27 ~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~g-a~~~~~G~~~~~l~~~~~G~  105 (290)
T PF01212_consen   27 EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETG-AIEELSGAKLIPLPSDDDGK  105 (290)
T ss_dssp             SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTT-HHHHHTTCEEEEEBECTGTB
T ss_pred             CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccc-hhhHhcCcEEEECCCcccCC
Confidence            47999999999999999999999999999999999999999999999988764322110 011235777777653     


Q ss_pred             CCHHHHHHhhcC-----CCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEECCCC------CCCcccccccC
Q 009523          274 ADMEGLEAALNN-----NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFA------TPLNQKALSLG  338 (532)
Q Consensus       274 ~dle~Le~al~~-----~~tklV~lesP~Npt-G~v~d---l~~I~~la~~~gi~lIvDet~a------~~~~~~~l~~g  338 (532)
                      .|+++|+++++.     .++++|++|+|+|.. |.+++   +++|.++||++|+.+++|.+-.      .......+..+
T Consensus       106 l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~  185 (290)
T PF01212_consen  106 LTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAG  185 (290)
T ss_dssp             B-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhh
Confidence            268999998865     358999999999863 77776   5678888999999999999921      11222334468


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCcc---HHHH---H--HHHHhHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN---PNAA---Y--LIIRGMKTLHLRVQQQNSTALR  410 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~---~~~a---~--l~l~~l~tl~~r~~~~~~~a~~  410 (532)
                      +|++..|++|.++.++   +++++++++++++.+.++..+|+.+.   ...+   |  ..+++++....++.+..+++++
T Consensus       186 ~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~  262 (290)
T PF01212_consen  186 ADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKR  262 (290)
T ss_dssp             SSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHC
T ss_pred             CCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999774   88999999988776666666654332   2222   1  2223333334566677788999


Q ss_pred             HHHHHHhCCC
Q 009523          411 MAKILEAHPK  420 (532)
Q Consensus       411 la~~L~~~p~  420 (532)
                      |++.|+..+.
T Consensus       263 La~~l~~~~~  272 (290)
T PF01212_consen  263 LAAGLEALGG  272 (290)
T ss_dssp             HHHCHHEECE
T ss_pred             HHHHHHHCCC
Confidence            9999887654

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.72  E-value=1.3e-15  Score=160.66  Aligned_cols=279  Identities=14%  Similarity=0.033  Sum_probs=173.7

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeC-CHHHHHHHHHHHhccC-CCEEEEcCCCCcchHHHHHHhcccCCc-EEEEeCCC
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMA-SGMSASTVMLLALVPA-GGHIVTTTDCYRKTRIFIETVLPKMGI-TATVIDPA  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~s-SG~~Ai~~al~all~~-Gd~VIv~~~~y~~t~~~~~~~l~~~Gv-~v~~vd~~  274 (532)
                      ...++.++.+++++|.+   ++++++ ||+.+++.++.+++++ ++.|++ ...|+..  +.....+++|+ +++.+...
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~--~~~~~~~~~g~~~v~~~~~~  124 (378)
T PRK03080         48 ALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK--WATDVVKQLKLEDPRVLEAD  124 (378)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH--HHHHHHhhcCCCCceEeccC
Confidence            45677889999999962   466675 8999999999999875 445554 5567653  23223356688 77776532


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCcc
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  348 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK  348 (532)
                           |+++    ++.  +++|.+.+..|.||.+.|+++|++  |++|++++||.+++.+. +++..+  +|+++.|.+|
T Consensus       125 ~g~~~d~~~----i~~--~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K  194 (378)
T PRK03080        125 YGSLPDLSA----VDF--DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQK  194 (378)
T ss_pred             CCCCCCHhh----cCC--CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhh
Confidence                 3443    332  567888899999999999999999  88999999999977543 344333  7999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHh------------------h-h-cCCC---ccHHHHHHHHHhHHHH------HH
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLH------------------H-V-LGGA---LNPNAAYLIIRGMKTL------HL  399 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~------------------~-~-~G~~---~~~~~a~l~l~~l~tl------~~  399 (532)
                      +++|+.  ..|+++.+++.++++....                  . . -+++   ++....+.+..+++.+      +.
T Consensus       195 ~l~~P~--G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~  272 (378)
T PRK03080        195 VLGGEG--GHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDA  272 (378)
T ss_pred             hCCCCC--ceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHH
Confidence            998743  2788999988877654310                  0 0 0111   2222222223344333      33


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCC
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGG  478 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~  478 (532)
                      +.+++.+.++.+.++|++.+.+. +..+    .+.        ...+.+++|.+++. ......++..+...++.+..|+
T Consensus       273 i~~r~~~l~~~l~~~l~~~~~~~-~~~~----~~~--------~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~  339 (378)
T PRK03080        273 LIARTAANASVLYDWAEKTPWAT-PLVA----DPA--------TRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEP  339 (378)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcc-cccC----Ccc--------ccCccEEEEEcCCchHHHHHHHHHHHHHcCCeecccc
Confidence            34455566777778888766432 1111    011        01245899988751 0011224444432345555543


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ..                       ..++.+|+|++..++++.++.+.++|+
T Consensus       340 ~~-----------------------~~~~~vRis~~~~~t~~di~~l~~al~  368 (378)
T PRK03080        340 YR-----------------------DAPNGLRIWCGPTVEPADVEALTPWLD  368 (378)
T ss_pred             cc-----------------------CCCCcEEEecCCCCCHHHHHHHHHHHH
Confidence            21                       014689999998776666666666665

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.72  E-value=3.9e-15  Score=151.31  Aligned_cols=269  Identities=18%  Similarity=0.209  Sum_probs=169.9

Q ss_pred             HHHHHHHHHhhhC----C------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          203 TVVVEEKMSALEG----A------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       203 ~~~Le~~lA~l~g----a------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+++++|++++    .      +..+++++++.|++++...|..|||..+++.|-|++.-.   .+-=+-|++++.+.
T Consensus       123 l~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdr---dl~~rTgveivpv~  199 (471)
T KOG0256|consen  123 LPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDR---DLRWRTGVEIVPVH  199 (471)
T ss_pred             chHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccc---cceeccCceEEEEE
Confidence            3456777777652    2      356777777799999999999999999999999998432   22224588888775


Q ss_pred             CC-------CHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccCHHH---HHHHHHhCCCEEEEECCCCCCCccc----
Q 009523          273 PA-------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATPLNQK----  333 (532)
Q Consensus       273 ~~-------dle~Le~al~~-----~~tklV~lesP~NptG~v~dl~~---I~~la~~~gi~lIvDet~a~~~~~~----  333 (532)
                      ..       +.++||+++++     .++|.|++.+|+||.|.+.+-++   +.++|.++++.+|+||+|+..+...    
T Consensus       200 c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~  279 (471)
T KOG0256|consen  200 CSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFR  279 (471)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCce
Confidence            32       57788877643     27999999999999999998665   5556779999999999977533211    


Q ss_pred             -cc--------ccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH------
Q 009523          334 -AL--------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL------  397 (532)
Q Consensus       334 -~l--------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl------  397 (532)
                       .+        .....-++.|+||-+|-+| ...|+++... ++....+++. .+|. .++..++++..-|..-      
T Consensus       280 Sv~ev~~~~~~~~~rvHivyslSKD~GlpG-fRvGviYS~ne~VvsaA~kms-sf~~-vSs~tQ~~la~LLSD~~f~~~y  356 (471)
T KOG0256|consen  280 SVLEVRKDPHLDPDRVHIVYSLSKDFGLPG-FRVGVIYSNNEDVVSAATKMS-SFGL-VSSQTQYLLASLLSDEEFTREY  356 (471)
T ss_pred             EHHHHhhccccCCCcEEEEEEeccccCCCc-eEEEEEEecChHHHHHHHHHh-hccC-CcHHHHHHHHHHhchHHHHHHH
Confidence             11        1122358899999999887 4678888755 5555555544 3444 3555555544433321      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-----C----HHHHHHHHHHc
Q 009523          398 -HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-----D----LTATIKFIDAL  467 (532)
Q Consensus       398 -~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-----~----~~~~~~~l~~L  467 (532)
                       .+..++......++.+.|++      ...|-+++            +.|-++|+.+..     +    .+.-+++++++
T Consensus       357 l~en~~Rl~~rh~~~~~gLk~------lgI~cl~s------------~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~v  418 (471)
T KOG0256|consen  357 LRENNKRLRIRHRYIVEGLKA------LGIPCLKS------------NAGLFCWVDLRKLLTSLTFEGELELWERILDNV  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhHHh------cCCceeec------------CCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhh
Confidence             11112222223344444443      33444443            356778888752     1    11223445444


Q ss_pred             CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHH
Q 009523          468 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE  519 (532)
Q Consensus       468 ~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~  519 (532)
                         ++-+|+|..+          |.+           .+|+.|+.|.-...+
T Consensus       419 ---klnlSpG~s~----------~C~-----------EpGWFRvcFAn~~~~  446 (471)
T KOG0256|consen  419 ---KLNLSPGSSC----------HCH-----------EPGWFRVCFANMSEE  446 (471)
T ss_pred             ---ccccCCCCcc----------eec-----------CCCeEEEEeccCCHH
Confidence               4456777542          221           368999999865443

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.71  E-value=1.4e-15  Score=159.10  Aligned_cols=276  Identities=12%  Similarity=0.058  Sum_probs=173.8

Q ss_pred             hhHHHHHHHHHhhhCC--C-cEEEeCC-HHHHHHHHHHHhcc---CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          201 PTTVVVEEKMSALEGA--E-STVIMAS-GMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--~-~~i~~sS-G~~Ai~~al~all~---~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...++.++.+++++|+  + +++++++ |++|+++++..+++   +||+|++.  .|.   .-+...+++.|+++++++.
T Consensus        44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g--~~~---~~~~~~a~~~g~~~~~~~~  118 (355)
T cd00611          44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTG--AWS---AKAAKEAKRYGGVVVIVAA  118 (355)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECC--HHH---HHHHHHHHhcCCCcEEEec
Confidence            5577889999999996  2 3566655 88999999999987   56666652  221   1112355777888887764


Q ss_pred             C------C-HHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEEC
Q 009523          274 A------D-MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHS  345 (532)
Q Consensus       274 ~------d-le~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S  345 (532)
                      +      + ++..+..+++ ++++|.+.+..|.||.+.+     ++++.+|++++||.+++.+ .+.+..+++  +++.|
T Consensus       119 ~~~g~~~~~~~~~~~~~~~-~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss  190 (355)
T cd00611         119 KEEGKYTKIPDVETWDLAP-DAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAG  190 (355)
T ss_pred             ccccCCCCCCCHhhcCCCC-CCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHhC--EEEee
Confidence            3      3 3333344555 7999999999999999843     4556699999999997654 345555544  56677


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHH-------hh--h---cCCCccHHHHHHHHHhHHHH------HHHHHHHHHH
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH--V---LGGALNPNAAYLIIRGMKTL------HLRVQQQNST  407 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~~--~---~G~~~~~~~a~l~l~~l~tl------~~r~~~~~~~  407 (532)
                      .+|.+|++|   .|+++.++++++++...       ..  .   .-++++....+.+..+++.+      +.+.+++.+.
T Consensus       191 ~~K~lGP~G---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l  267 (355)
T cd00611         191 AQKNLGPAG---VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQK  267 (355)
T ss_pred             cccccCCCc---eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999887   68888888877654321       00  0   11234444444444455543      3344556677


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      ++++.+.|++.|++    |.... .+..        ..+.+++|.+++. .....+++.+...|+....|          
T Consensus       268 ~~~l~~~l~~~~gl----~~~~~-~~~~--------rs~~vvsf~~~~~-~l~~~~~~~~~r~G~~~~~~----------  323 (355)
T cd00611         268 AQLLYDTIDNSNGF----YRGPV-DKRA--------RSRMNVPFRLGKE-ELEKEFLKEAEAAGMIGLKG----------  323 (355)
T ss_pred             HHHHHHHHHhCccc----cccCC-CHHH--------cCceEEEEEcCCh-hhhHHHHHHHHHCCCcccCC----------
Confidence            78888888887653    21111 1110        1345799998752 11133333322223221111          


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                         |.            ..+.||+|++..++++.|+.|.++|++
T Consensus       324 ---~~------------~~g~vR~S~~~~nt~edi~~l~~al~~  352 (355)
T cd00611         324 ---HR------------SVGGIRASIYNALSLEGVQALADFMKE  352 (355)
T ss_pred             ---Cc------------ccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence               10            136899999999888888999888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.71  E-value=5.6e-15  Score=158.14  Aligned_cols=285  Identities=16%  Similarity=0.166  Sum_probs=177.8

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHh-------c------
Q 009523          198 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETV-------L------  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~-------l------  261 (532)
                      +.++...+|.++|+++.+. +.+++++||++|+..+++..  ....++||+.++.|++........       .      
T Consensus        85 ~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  164 (423)
T TIGR00713        85 APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSP  164 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCC
Confidence            4567788999999998764 57888999999999988753  235689999999999853222110       0      


Q ss_pred             ---ccCCcEEEEeCCCCHHHHHHhhcC--CCeeEEEEe-CCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCC-
Q 009523          262 ---PKMGITATVIDPADMEGLEAALNN--NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-  330 (532)
Q Consensus       262 ---~~~Gv~v~~vd~~dle~Le~al~~--~~tklV~le-sP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~-  330 (532)
                         ...+..+..++..|+++|++++++  .++++|++| .++| +|.+.+    +++|.++|++||+++|+||++.... 
T Consensus       165 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~  243 (423)
T TIGR00713       165 GVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV  243 (423)
T ss_pred             CCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc
Confidence               001112344556689999998862  268999998 5566 788877    7899999999999999999974321 


Q ss_pred             ----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---hhcCCCccHHHHHHHHHhHHHHHH--HH
Q 009523          331 ----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLHL--RV  401 (532)
Q Consensus       331 ----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---~~~G~~~~~~~a~l~l~~l~tl~~--r~  401 (532)
                          .........|++  +++|.+++ | ..+|++++++++++.+....   .......++..+..++..++.+..  .+
T Consensus       244 g~~~~~~~~~~~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~  319 (423)
T TIGR00713       244 ALGGAQEYFGVEPDLT--TLGKIIGG-G-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVY  319 (423)
T ss_pred             CcchhHHHhCCCcchh--hhhhhhcC-C-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHH
Confidence                111123345655  69999984 3 46899999999888875321   111123567777666666665432  23


Q ss_pred             HHHHHHHHHHHHH----HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHH
Q 009523          402 QQQNSTALRMAKI----LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFID  465 (532)
Q Consensus       402 ~~~~~~a~~la~~----L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------------~~~~~~~l~  465 (532)
                      ++..+..+++.+.    +++++.+..+                  ++.|+++.+++..+            ......+.+
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~~v------------------~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (423)
T TIGR00713       320 TELDELAKRLAEGLSEVLEDTGIPHTV------------------NRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFH  381 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEE------------------EeeccEEEEEEecCCCCChhhhhcccHHHHHHHHH
Confidence            3333334444443    3344322222                  23577888777521            122345665


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhhC
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHAI  532 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~~l  532 (532)
                      .+...++.+..++                           .+.+||+...  ++.+++++.|+++|+++
T Consensus       382 ~l~~~Gv~v~~~~---------------------------~~~~~l~~~~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       382 EMLDKGVFLPPSQ---------------------------FEACFLSAAHTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             HHHHCCeEEecCC---------------------------ccceeeECCCCHHHHHHHHHHHHHHHhhC
Confidence            5554454443211                           1236777643  45667777777777653

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.71  E-value=1.2e-15  Score=154.12  Aligned_cols=283  Identities=18%  Similarity=0.225  Sum_probs=196.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      +....+||+.||+|.+.+.+++|+|..-|+...|..|.+  ||-+|......|.+...-    .+..+++-..+..+|++
T Consensus       215 s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~G----Irns~v~K~IFrHND~~  290 (570)
T KOG1360|consen  215 SKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQG----IRNSRVPKHIFRHNDLD  290 (570)
T ss_pred             CchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHH----hhhcCCcceeeccCCHH
Confidence            455778999999999999999999999888888877744  788888777777664433    34456666667889999


Q ss_pred             HHHHhhcCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---------cccccCCcEEEEC
Q 009523          278 GLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHS  345 (532)
Q Consensus       278 ~Le~al~~~---~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---------~~l~~gaDivv~S  345 (532)
                      +|+++++..   -+|+|-+|+.++..|.+.|+++|++++|+||++..+||+.+.++.-         +..-...||+..+
T Consensus       291 hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGT  370 (570)
T KOG1360|consen  291 HLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGT  370 (570)
T ss_pred             HHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccc
Confidence            999998642   4899999999999999999999999999999999999996654321         1122346999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHhC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLH-----LRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl~-----~r~~~~~~~a~~la~~L~~~  418 (532)
                      +.|.||-    +||++.+...+++.+|.+..  .+...++|.....++.+++.+.     ...+++++|..++.+.|.+.
T Consensus       371 LgKafGc----VGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~  446 (570)
T KOG1360|consen  371 LGKAFGC----VGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL  446 (570)
T ss_pred             hhhhccc----ccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999994    58999999999999987643  4556677765554554444332     22346668888898888764


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCccccccCCCHH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      .      .|-++ .|            ..++-+.+. +.....+..+.| ...+|.+-      -+-.|..      +  
T Consensus       447 G------iPVi~-~p------------SHIiPv~vg-da~l~~~~sd~Li~~h~iYvQ------aINyPTV------~--  492 (570)
T KOG1360|consen  447 G------IPVIP-NP------------SHIIPVRVG-DAALAKQASDILISKHNIYVQ------AINYPTV------A--  492 (570)
T ss_pred             C------CcccC-CC------------cceeeeecc-CHHHHHHHHHHHHHhcCeEEE------eccCCcc------c--
Confidence            2      23222 12            237777774 433333333322 11222221      1112321      0  


Q ss_pred             HHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          498 ERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                            .....+||.-...++.+..++|.++|.
T Consensus       493 ------rG~E~LRiaPTP~HT~~mm~~lv~~l~  519 (570)
T KOG1360|consen  493 ------RGTERLRIAPTPHHTPQMMNILVNALL  519 (570)
T ss_pred             ------ccceeeecCCCCCCCHHHHHHHHHHHH
Confidence                  124578988887777777777777664

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=6.5e-15  Score=155.17  Aligned_cols=276  Identities=13%  Similarity=0.093  Sum_probs=169.1

Q ss_pred             hHHHHHHHHHhhhCC--C-cEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchH-HHHHHh-----cccCCc---E
Q 009523          202 TTVVVEEKMSALEGA--E-STVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-----LPKMGI---T  267 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga--~-~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~-~~~~~~-----l~~~Gv---~  267 (532)
                      ....+++.+++.+..  + .+++++||++|+..+++...  ..+++|++.+..|++.. ..+...     ...++.   .
T Consensus        67 ~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~  146 (375)
T PRK04260         67 YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPH  146 (375)
T ss_pred             cCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCC
Confidence            445566777765432  2 25788999999998887652  45678999888888732 222110     011111   1


Q ss_pred             EEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc-c-----ccccc
Q 009523          268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-Q-----KALSL  337 (532)
Q Consensus       268 v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~-~-----~~l~~  337 (532)
                      +.+.+.+|++++++.+++ ++++|++|+++|++|.+.+    +++|.++|+++|+++|+||++..... .     .....
T Consensus       147 ~~~~~~~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~  225 (375)
T PRK04260        147 FSYAIFNDLNSVKALVNK-NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI  225 (375)
T ss_pred             eEEeCCCCHHHHHHhcCC-CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC
Confidence            233345689999998876 6899999999999998876    89999999999999999999743211 0     11123


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKIL  415 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L  415 (532)
                      ..|++  |++|.++++  ...|++++++++.+.+...........++..+..+...++.+.  ..+++..+..+++.+.|
T Consensus       226 ~pdi~--t~sK~l~~G--~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l  301 (375)
T PRK04260        226 EPDIF--TLAKGLANG--VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQL  301 (375)
T ss_pred             CCCEE--EecccccCC--cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45655  799999854  4688999998887776532211112235666666655564432  22334444444444444


Q ss_pred             Hh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          416 EA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       416 ~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .+    ++.+..+                  ++.|.+++++++.   ....|.+.+...++.+..+              
T Consensus       302 ~~~~~~~~~~~~~------------------~~~g~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~--------------  346 (375)
T PRK04260        302 QKALQDKETVTTV------------------RGLGYMIGIETTA---DLSQLVEAARDKGLIVLTA--------------  346 (375)
T ss_pred             HHHHhhCCCeeEE------------------eccceEEEEEecC---cHHHHHHHHHhCCCEEecC--------------
Confidence            33    3222211                  2357899999853   2345666665445433211              


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                   ..+.|||+......++.++.+.+.|+
T Consensus       347 -------------~~~~lR~~~~~~~t~~~i~~~l~~l~  372 (375)
T PRK04260        347 -------------GTNVIRLLPPLTLTKEEIEQGIAILS  372 (375)
T ss_pred             -------------CCCEEEEcCCCccCHHHHHHHHHHHH
Confidence                         13679999965444554555545444

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.69  E-value=6.4e-15  Score=169.31  Aligned_cols=165  Identities=15%  Similarity=0.167  Sum_probs=134.5

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHH----HHHHHHHHHhccC-CC----EEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGAESTVIMASGM----SASTVMLLALVPA-GG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~i~~sSG~----~Ai~~al~all~~-Gd----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..++++.|++++|.+.+++..+.+    +|+++++.++.++ ||    +||++...|+++...+    ...|+++++++.
T Consensus       570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a----~~~G~~vv~v~~  645 (993)
T PLN02414        570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASA----AMCGMKIVVVGT  645 (993)
T ss_pred             HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHH----HHCCCEEEEecc
Confidence            567899999999997777776665    7899999999876 88    8999999999876544    236899988875


Q ss_pred             C-----CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC--cccccccCCcEEEE
Q 009523          274 A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLH  344 (532)
Q Consensus       274 ~-----dle~Le~al~~--~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~--~~~~l~~gaDivv~  344 (532)
                      +     |+++|++++++  .+|++|++.+|+|.+|...|+++|+++||++|+++++|.++....  ...|.++|+|+++.
T Consensus       646 d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~  725 (993)
T PLN02414        646 DAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHL  725 (993)
T ss_pred             CCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEe
Confidence            3     89999999984  268999999999999999999999999999999999999975433  35677899999999


Q ss_pred             CCccccCCC---CCcEEEEEEeChHHHHHH
Q 009523          345 SATKFIGGH---NDVLAGSISGSGKLVTQI  371 (532)
Q Consensus       345 S~sK~lgg~---gd~~gG~lv~~~~li~~l  371 (532)
                      |.||+|+++   |+...|+++.++.+...+
T Consensus       726 s~HK~f~~P~G~GGPg~G~l~~~~~L~p~l  755 (993)
T PLN02414        726 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFL  755 (993)
T ss_pred             cCCccCCcCcccCCCCeeeEEEchhhcccC
Confidence            999976633   222367888877665443

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.69  E-value=8.8e-15  Score=152.76  Aligned_cols=285  Identities=11%  Similarity=0.051  Sum_probs=184.7

Q ss_pred             CCCCCCCCc---hhHHHHHHHHHhhhCC-C--cEEEeC-CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          192 SFEYGRYGN---PTTVVVEEKMSALEGA-E--STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       192 ~~~Y~R~~~---p~~~~Le~~lA~l~ga-~--~~i~~s-SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      .+..+....   ...+++++.|.++++. +  ++++++ ||+.|+++++..++.+||++++....+.+.+  +...++++
T Consensus        25 ~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~~  102 (349)
T TIGR01364        25 VMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKKY  102 (349)
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHh
Confidence            344444444   5677889999999995 2  366664 4899999999999999999887766665543  34567778


Q ss_pred             CcEEEEeC---------CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-Ccccc
Q 009523          265 GITATVID---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKA  334 (532)
Q Consensus       265 Gv~v~~vd---------~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~  334 (532)
                      |+ +..+.         ..|+++++  +++ ++++|.+.+-.+.||...+     ++++.++++++||.+++.+ .+.+.
T Consensus       103 g~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~  173 (349)
T TIGR01364       103 GV-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDV  173 (349)
T ss_pred             CC-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCH
Confidence            87 54443         12444444  334 6899999888899999886     6777789999999997654 33444


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-------h-----hhcCCCccHHHHHHHHHhHHH------
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------H-----HVLGGALNPNAAYLIIRGMKT------  396 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~-----~~~G~~~~~~~a~l~l~~l~t------  396 (532)
                      .++  |+++.|.+|++|++|   .|+++.++++++++...       .     ...-++++....+.+..+++.      
T Consensus       174 ~~~--d~~~~ssqK~lgP~G---lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG  248 (349)
T TIGR01364       174 SKF--GLIYAGAQKNIGPAG---LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGG  248 (349)
T ss_pred             HHc--cEEEEecccccCCCc---eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Confidence            444  599999999999876   78888888887655321       1     011123444444444444443      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          397 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       397 l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      ++.+.+++.+.++++.+.|++.+++.   .+..  .|..        ..+.+++|.+++. .....++..+...|+++..
T Consensus       249 ~e~i~~r~~~l~~~l~~~l~~~~gl~---~~~~--~~~~--------rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~~~~  314 (349)
T TIGR01364       249 VKAIEKRNQAKAQLLYDTIDNSNGFY---RNPV--DPRN--------RSRMNVVFTLGNE-ELEKRFLKEAEERGLVSLK  314 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCee---ccCC--CHHH--------cCCeEEEEecCCh-hHhHHHHHHHHHCCCcccC
Confidence            44455666777888888888876531   1111  1111        1346789998753 1224555554444543222


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      |..                         ..+.+|+|++.+++++.|+.|.++|++
T Consensus       315 ~~~-------------------------~~g~vRvS~~~~nt~edid~l~~al~~  344 (349)
T TIGR01364       315 GHR-------------------------SVGGMRASIYNAMPLEGVQALVDFMKE  344 (349)
T ss_pred             Ccc-------------------------ccCeeEEECcCCCCHHHHHHHHHHHHH
Confidence            210                         136899999988777777777777764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.69  E-value=4e-15  Score=150.33  Aligned_cols=258  Identities=21%  Similarity=0.307  Sum_probs=165.1

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEc-CCCCcchHHHHH------Hh
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTT-TDCYRKTRIFIE------TV  260 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~---~sSG~~Ai~~al~all~~Gd~VIv~-~~~y~~t~~~~~------~~  260 (532)
                      .+|.|   ++..++.|++..|+.+|++++++   +.||+.||.++|.++++|||+++.. ..-|-.....+-      ..
T Consensus        47 TGYGY---~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GS  123 (403)
T PF06838_consen   47 TGYGY---DDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGS  123 (403)
T ss_dssp             -TT-T---T-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSS
T ss_pred             CcCCC---CCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCC
Confidence            35555   45678999999999999999987   5799999999999999999999864 445654333331      13


Q ss_pred             cccCCcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCC----CCCCcccCHHHHHHHHHh--CCCEEEEECCCCCC
Q 009523          261 LPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATP  329 (532)
Q Consensus       261 l~~~Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~----NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~  329 (532)
                      |+.+|+.+..++..     |.+.+++++++ +||+|++.---    -|+..+.+++++++++|+  .+++++|||+|+.+
T Consensus       124 L~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEF  202 (403)
T PF06838_consen  124 LKEFGIKYREVPLTEDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEF  202 (403)
T ss_dssp             TGGGT-EEEE--B-TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTT
T ss_pred             hHHhCceeEEEeecCCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCccee
Confidence            56789999988743     79999999997 79999996432    455666677888888776  47999999999988


Q ss_pred             Cc-ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh------hhcCCCccHHHHHHHHHhHHHHHHHHH
Q 009523          330 LN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------HVLGGALNPNAAYLIIRGMKTLHLRVQ  402 (532)
Q Consensus       330 ~~-~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~------~~~G~~~~~~~a~l~l~~l~tl~~r~~  402 (532)
                      .. ..|.+.|+|++..|+-|..||+--..||+++|+++++++.....      ...|.+++.  .-.+.+|+--.+.-+.
T Consensus       203 vE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~--~R~~~QGlFlAP~vV~  280 (403)
T PF06838_consen  203 VETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGT--NRLMFQGLFLAPHVVG  280 (403)
T ss_dssp             TSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTT--HHHHHHHHHHHHHHHH
T ss_pred             ccccCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcch--HHHHHhHHhhchHHHH
Confidence            64 67889999999999999999886667999999999999875422      233444432  2234455555555555


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI  469 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~  469 (532)
                      +..+.+...+..+++...  .| .|... .+..+          -+-+++|. +.+...+|.+.++.
T Consensus       281 eAlKgaif~A~~fe~lG~--~v-~P~~~-~~R~D----------iIQai~l~-~~e~l~~FC~~iQ~  332 (403)
T PF06838_consen  281 EALKGAIFAAALFEKLGF--EV-SPKPD-DPRSD----------IIQAIELG-SPEKLIAFCQGIQA  332 (403)
T ss_dssp             HHHHHHHHHHHHHHHTT---EE-ES-TT-S--SS----------S-EEEE-S-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC--cC-CCCCC-CCCCc----------eEEEEECC-CHHHHHHHHHHHHh
Confidence            556666677777777532  12 22211 12222          26688885 57888899888753

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.69  E-value=6.1e-15  Score=154.55  Aligned_cols=277  Identities=16%  Similarity=0.095  Sum_probs=178.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCC-CEEEEcCCCCcchHHHHHHh---------ccc
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAG-GHIVTTTDCYRKTRIFIETV---------LPK  263 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~G-d~VIv~~~~y~~t~~~~~~~---------l~~  263 (532)
                      ...+.++...+|+++|+++.+.+.+++++||++|+..+++.. ...| ++||+.+..|++.....-..         ...
T Consensus        60 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p  139 (364)
T PRK04013         60 GPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEP  139 (364)
T ss_pred             cCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCC
Confidence            345778889999999999988788999999999999999855 2345 89999999998853221110         111


Q ss_pred             CCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc-C---HHHHHHHHHhCCCEEEEECCCCCC-----Ccccc
Q 009523          264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFATP-----LNQKA  334 (532)
Q Consensus       264 ~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~-d---l~~I~~la~~~gi~lIvDet~a~~-----~~~~~  334 (532)
                      .-..+..++..|++.+++.+.+ ++++|++|......|... |   +++|.++|++||+++|+||++...     +....
T Consensus       140 ~~~~~~~~~~~d~~~l~~~i~~-~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~  218 (364)
T PRK04013        140 LVPGFKHIPFNDVEAAKEAITK-ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEH  218 (364)
T ss_pred             CCCCcEEecCCCHHHHHHHhcC-CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHh
Confidence            1123455666789999999976 799999998887666654 4   899999999999999999996532     11223


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~  414 (532)
                      .....|+++  ++|.++++  ...|.++.+.++..    .........+|..+..++..++.+...  ...++++++.+.
T Consensus       219 ~gv~PDiv~--~gK~lggG--~P~~a~~~~~~~~~----~~~~~T~~gnp~~~aaa~a~l~~i~~~--~l~~~~~~~l~~  288 (364)
T PRK04013        219 YKVEPDIVT--MGKGIGNG--VPVSLTLTNFDVER----GKHGSTFGGNPLACKAVAVTLRILRRE--RLVEKAGEKFIE  288 (364)
T ss_pred             cCCCCCEEE--ecccccCC--ceeEEEEecccccC----CCcCCCCCcCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Confidence            345578888  68999975  45566666655411    111111224677777777777665431  223333333111


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      +. .+.|                  ...+|.|.|+.+++...   ...+.+.+...++-+...                 
T Consensus       289 l~-~~~v------------------~~vRG~Gl~~gve~~~~---~~~i~~~~~~~Gll~~~~-----------------  329 (364)
T PRK04013        289 IK-GERV------------------VTTRGRGLMIGIVLKKP---VGKYVEELQNRGYLVHTA-----------------  329 (364)
T ss_pred             hc-cCcc------------------eeeeeCcEEEEEEeCCc---HHHHHHHHHhCCcEEeeC-----------------
Confidence            11 1211                  12367899999999742   334555544334332211                 


Q ss_pred             CHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhh
Q 009523          495 SQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~~  531 (532)
                                ..+.|||.-.    .++.++.++.|+++|++
T Consensus       330 ----------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        330 ----------GQRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             ----------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence                      1245666543    46777788888888764

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.68  E-value=7.4e-15  Score=156.68  Aligned_cols=212  Identities=15%  Similarity=0.155  Sum_probs=153.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHH-HHHHHHHHHhcc---CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASGM-SASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG~-~Ai~~al~all~---~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+++++.++++.|.+   .++++++|+ .++.+++.++-.   +||+||++...|.++..    .+...|++++++|.
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~k----Ai~~~G~~pv~Vd~  180 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIK----AISTAGFEPRVIET  180 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHH----HHHHcCCeEEEeee
Confidence            34677899999999987   689999999 688888777642   58999999999887653    44556788777773


Q ss_pred             --------CCHHHHHHhhcCC--CeeEEEEeCCC-CCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc------cccc
Q 009523          274 --------ADMEGLEAALNNN--NVSLFFTESPT-NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALS  336 (532)
Q Consensus       274 --------~dle~Le~al~~~--~tklV~lesP~-NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~------~~l~  336 (532)
                              .|+++|+++|++.  ++.++++.+|+ .+.|.+.|+++|+++|++||+++|+|++|+.....      ....
T Consensus       181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~  260 (444)
T TIGR03531       181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIK  260 (444)
T ss_pred             eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcccc
Confidence                    2899999999752  35666666665 55678899999999999999999999998854321      2233


Q ss_pred             cC-CcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHH--HhHHHHHHHHHHHHHHHHHHH
Q 009523          337 LG-ADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMA  412 (532)
Q Consensus       337 ~g-aDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l--~~l~tl~~r~~~~~~~a~~la  412 (532)
                      .| +|++++|+||++..+++  ||+++. ++++++.++..............+|+.+  .+.+.+...+++..++++++.
T Consensus       261 ~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~  338 (444)
T TIGR03531       261 VGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK  338 (444)
T ss_pred             ccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            44 69999999999986653  677766 6677777765422111111223344332  355667777788888888888


Q ss_pred             HHHHhC
Q 009523          413 KILEAH  418 (532)
Q Consensus       413 ~~L~~~  418 (532)
                      +.|++.
T Consensus       339 ~~L~~l  344 (444)
T TIGR03531       339 ELLQKL  344 (444)
T ss_pred             HHHHHH
Confidence            888764

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.68  E-value=4.8e-14  Score=151.32  Aligned_cols=287  Identities=14%  Similarity=0.132  Sum_probs=183.0

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc----CC-CEEEEcCCCCcchHHHHHHh-----c-cc-
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETV-----L-PK-  263 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~----~G-d~VIv~~~~y~~t~~~~~~~-----l-~~-  263 (532)
                      ..+|...+|.++|+++...  +.+++++||++|+..+++....    .| .+||+....|++........     . +. 
T Consensus       114 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~  193 (442)
T TIGR03372       114 LLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPF  193 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence            4578888899999998754  4578889999999999874321    23 57888888888843211111     0 11 


Q ss_pred             --CCcEEEEeCCCCHHHHHHhhc-----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC---
Q 009523          264 --MGITATVIDPADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  329 (532)
Q Consensus       264 --~Gv~v~~vd~~dle~Le~al~-----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~---  329 (532)
                        ..-.+..++..|.+++++.++     ..++.+|++|......|.+.|    ++++.++|++||+++|+||++...   
T Consensus       194 ~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt  273 (442)
T TIGR03372       194 MPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT  273 (442)
T ss_pred             CCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc
Confidence              112345567778888877774     136899999999888898888    999999999999999999996321   


Q ss_pred             ---CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHH--HH
Q 009523          330 ---LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLR--VQ  402 (532)
Q Consensus       330 ---~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~--~~~~a~l~l~~l~tl~~r--~~  402 (532)
                         +.......-.|+++  ++|.+|++- ...|.+++++++.+.+......++++.  +|..+..++..++.+...  .+
T Consensus       274 G~~~a~e~~gv~PDivt--~gK~lg~G~-~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~  350 (442)
T TIGR03372       274 GKMFACEHEGVQPDILC--LAKALGGGV-MPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPA  350 (442)
T ss_pred             ccchhhhhcCCCCCeee--ehhhhcCCc-ccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence               11222334578887  899998641 135666778888777642111234444  677777777777765421  22


Q ss_pred             HHHHHHHHHHHHHHh----CC-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009523          403 QQNSTALRMAKILEA----HP-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       403 ~~~~~a~~la~~L~~----~p-~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      +..+..+++.+.|++    +| .+..|                  +|.|.|+.+++..+ .....+.+.+...++-++..
T Consensus       351 ~~~~~G~~l~~~L~~l~~~~~~~i~~v------------------RG~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~  411 (442)
T TIGR03372       351 QAAIKGDFLLDGFQQLAAEYPDLIIEA------------------RGKGLLMAIEFRDN-EIGYAFAKELFQQNILVAGT  411 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEE------------------ecceEEEEEEeCCh-HHHHHHHHHHHHCCcEEeec
Confidence            233334444444443    22 12222                  46788999999643 34456666665555443211


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                               +...+.|||+..+-.+++.++.+.++|++
T Consensus       412 -------------------------~~~~~~lr~~Ppl~~t~~~id~~~~~l~~  440 (442)
T TIGR03372       412 -------------------------LNNAKSIRIEPPLTITIEQCALVIKAAKD  440 (442)
T ss_pred             -------------------------CCCCCEEEEECCcccCHHHHHHHHHHHHH
Confidence                                     01236799988876666666666665543

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PLN02271 serine hydroxymethyltransferase

Probab=99.68  E-value=3.6e-14  Score=152.63  Aligned_cols=253  Identities=20%  Similarity=0.170  Sum_probs=163.5

Q ss_pred             CCCCCCC--CchhHHHHH----HHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHH--
Q 009523          192 SFEYGRY--GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE--  258 (532)
Q Consensus       192 ~~~Y~R~--~~p~~~~Le----~~lA~l~ga~~-----~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~--  258 (532)
                      +|.-.||  |+...+++|    ++..+++|++.     .+-.-||+.|+.+++.++++|||+|+..+..|++......  
T Consensus       179 G~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~  258 (586)
T PLN02271        179 GMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYT  258 (586)
T ss_pred             CCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccccc
Confidence            3433454  455555553    55556778543     3555699999999999999999999999999998654221  


Q ss_pred             ---HhcccCCcEEEEeC--C------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCC
Q 009523          259 ---TVLPKMGITATVID--P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA  327 (532)
Q Consensus       259 ---~~l~~~Gv~v~~vd--~------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a  327 (532)
                         ......|+.+..++  .      .|.++|++.+...++|+|++....+|  ...|+++|.++|+++|+++++|.++.
T Consensus       259 ~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~  336 (586)
T PLN02271        259 PGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHI  336 (586)
T ss_pred             ccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECccc
Confidence               11233454443332  2      38999998544448999999777777  77899999999999999999999976


Q ss_pred             CCCc-----ccccccCCcEEEECCccccCCCCCcEEEEEEeChH--------------------HHHHHHHHh--hhcCC
Q 009523          328 TPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------------------LVTQIRNLH--HVLGG  380 (532)
Q Consensus       328 ~~~~-----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~--------------------li~~l~~~~--~~~G~  380 (532)
                      .++.     ..|.. ++|+++.|+||++.|+.   ||+++.+++                    +.+++....  ...|+
T Consensus       337 aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgG  412 (586)
T PLN02271        337 SGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGG  412 (586)
T ss_pred             ccccccCcCCCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccC
Confidence            5532     24554 59999999999998884   677776542                    334443321  12233


Q ss_pred             CccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          381 ALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      ..+...+.++ .+++     ......++..+|++.|++.|.+. ++.-+ .-+..+               .++.+.+..
T Consensus       413 phn~~IAalA-valkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv-~ggTdn---------------HlvLvDl~~  474 (586)
T PLN02271        413 PHNNHIAALA-IALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLV-TGGTDN---------------HLLLWDLTT  474 (586)
T ss_pred             hhHHHHHHHH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEe-eCCCCc---------------ceeeecCcc
Confidence            2222222221 1222     33556778889999999999876 33222 223222               266676643


Q ss_pred             ---CHHHHHHHHHHcC
Q 009523          456 ---DLTATIKFIDALK  468 (532)
Q Consensus       456 ---~~~~~~~~l~~L~  468 (532)
                         +...+++.++...
T Consensus       475 ~g~~G~~ae~~Le~~~  490 (586)
T PLN02271        475 LGLTGKNYEKVCEMCH  490 (586)
T ss_pred             cCCCHHHHHHHHHHcC
Confidence               2355666666543

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.67  E-value=1.7e-14  Score=153.64  Aligned_cols=290  Identities=17%  Similarity=0.127  Sum_probs=177.8

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhcc----CC-----CEEEEcCCCCcchHHHHHHh-------
Q 009523          198 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP----AG-----GHIVTTTDCYRKTRIFIETV-------  260 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~~Ai~~al~all~----~G-----d~VIv~~~~y~~t~~~~~~~-------  260 (532)
                      +.++...+|.++|.++.+. +.+++++||++|+..+++....    .|     .+|+.....|++........       
T Consensus        79 ~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~  158 (408)
T PRK04612         79 FYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQ  158 (408)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccc
Confidence            4567777888999888753 6788899999999999874421    12     36888888888843211111       


Q ss_pred             --cccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC-----HHHHHHHHHhCCCEEEEECCCCCCCc--
Q 009523          261 --LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-----VKLVSDLCHKKGAIVCIDGTFATPLN--  331 (532)
Q Consensus       261 --l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d-----l~~I~~la~~~gi~lIvDet~a~~~~--  331 (532)
                        .....-.+..++..|++.++++++++++.+|++|. .+++|.+.+     +++|.++|++||+++|+||++...-.  
T Consensus       159 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP-~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G  237 (408)
T PRK04612        159 EGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEP-IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG  237 (408)
T ss_pred             cCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence              00011124456777999999999754677777754 555655543     78999999999999999999753211  


Q ss_pred             --ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHH
Q 009523          332 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  407 (532)
Q Consensus       332 --~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~  407 (532)
                        ......+.+..+.+++|.++++  ...|++++++++.+.+...........+|..+.++...++.+..  ..++..+.
T Consensus       238 ~~~a~~~~~~~pdi~t~~K~l~~G--~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~  315 (408)
T PRK04612        238 TLFAHWQEQVTPDIVTLAKALGGG--FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQ  315 (408)
T ss_pred             chhhhhhcCCCCCEEEEcchhcCC--CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence              1111234445556799999854  45677788888777665432222223467777777777766532  23333344


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      .+++.+.|++...    .++..          ...+|.|.|+.+++..+ ...+..+.+.+...++.+...         
T Consensus       316 g~~l~~~l~~l~~----~~~~i----------~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~---------  372 (408)
T PRK04612        316 SAALRAGLEALNA----EFGVF----------AQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA---------  372 (408)
T ss_pred             HHHHHHHHHHHHh----hCCCe----------eeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeC---------
Confidence            4555555543210    01110          11256788999998632 234566666666555433210         


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~~  531 (532)
                                        ..+.||+...    .++.+..++.|+++|.+
T Consensus       373 ------------------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        373 ------------------GPDVLRFVPALNLTDAELADGLARLRLALAD  403 (408)
T ss_pred             ------------------CCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence                              1356888754    35667777777777754

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.67  E-value=1.7e-15  Score=159.29  Aligned_cols=177  Identities=24%  Similarity=0.365  Sum_probs=131.9

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+.....+.++..|+++|++++++..+|+ .+|.+++++++++||.|++++++|.+.+..    +...|+.++++++.  
T Consensus        63 ~p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~a----lil~ga~Pvyi~p~~~  138 (417)
T PF01276_consen   63 DPEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNA----LILSGAIPVYIPPEDN  138 (417)
T ss_dssp             TTBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHH----HHHHTEEEEEEEEEE-
T ss_pred             CCccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHH----HHHcCCeEEEecCCcc
Confidence            45566888999999999999999999998 899999999999999999999999987643    34457777776531  


Q ss_pred             --------CH-----HHHHHhhcCC-C---eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc----
Q 009523          275 --------DM-----EGLEAALNNN-N---VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK----  333 (532)
Q Consensus       275 --------dl-----e~Le~al~~~-~---tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~----  333 (532)
                              ++     +.++++++++ .   +++|++.+|+ ..|.+.|+++|+++||+++++|+|||+++..+.+.    
T Consensus       139 ~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~  217 (417)
T PF01276_consen  139 EYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPR  217 (417)
T ss_dssp             TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGT
T ss_pred             ccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCcc
Confidence                    34     8898888653 2   3459998888 78999999999999999999999999988764433    


Q ss_pred             -ccccCCc-------EEEECCccccCCCCCcEEEEEEeChH---HHHHHHHHhhhcCCC
Q 009523          334 -ALSLGAD-------LVLHSATKFIGGHNDVLAGSISGSGK---LVTQIRNLHHVLGGA  381 (532)
Q Consensus       334 -~l~~gaD-------ivv~S~sK~lgg~gd~~gG~lv~~~~---li~~l~~~~~~~G~~  381 (532)
                       ....|+|       +++.|+||.+++..  .+.++-.+.+   -.++++.....+.++
T Consensus       218 ~a~~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~~v~~~~~~~~l~~~~TT  274 (417)
T PF01276_consen  218 SALALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDRIVDHERVNEALSMHQTT  274 (417)
T ss_dssp             TCSSTTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCCCTTHHHHHHHHHHHS-S
T ss_pred             chhhccCccccccceeeeechhhcccccc--cceEEEecCCCcccHHHHHHHHHHHcCC
Confidence             3457999       99999999999876  4566655443   246666655555443

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.67  E-value=9.7e-15  Score=153.10  Aligned_cols=276  Identities=12%  Similarity=0.029  Sum_probs=179.7

Q ss_pred             hhHHHHHHHHHhhhCC-C--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          201 PTTVVVEEKMSALEGA-E--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga-~--~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      ...++.++.|+++++. +  +++++ +||+.|+++++..++.+||++++......+..  +...++++|.. ..+...  
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~~g~~-~~~~~~~~  124 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKKYGEV-NVAASSED  124 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCc-eEEecccc
Confidence            6678889999999996 2  34444 67779999999999999998877665555433  33566777765 333211  


Q ss_pred             ----CHHHHHH-hhcCCCeeEEEEeCCCCCCCccc-CHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCc
Q 009523          275 ----DMEGLEA-ALNNNNVSLFFTESPTNPFLRCV-DVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  347 (532)
Q Consensus       275 ----dle~Le~-al~~~~tklV~lesP~NptG~v~-dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~s  347 (532)
                          +..++++ .+++ ++++|.+.+-.+.||.+. |+++|      +|++++||.+++.+ .+.+..++  |+++.|.+
T Consensus       125 ~g~~~~~~~~~~~l~~-~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssq  195 (360)
T PRK05355        125 DGFTYIPPLDEWQLSD-DAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQ  195 (360)
T ss_pred             cCCCCCCChhhccCCC-CCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEecc
Confidence                2334444 6766 689999988889999998 77766      89999999997654 33444444  59999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHH-h-----------hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNL-H-----------HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  409 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~-~-----------~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a~  409 (532)
                      |.+|++|   .|+++.++++++++... .           ...-++++....+.+..+++.      ++.+.+++.+.++
T Consensus       196 K~lgP~G---lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~  272 (360)
T PRK05355        196 KNIGPAG---LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA  272 (360)
T ss_pred             ccccCCc---eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999876   78888888877665431 1           011133444444444444443      3455566677888


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.++|++.+.+..+     . .+.+        ..+.+++|.+++. .....+++.+...|+....|            
T Consensus       273 ~l~~~l~~~~~~~~~-----~-~~~~--------rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~~~~~------------  325 (360)
T PRK05355        273 LLYDAIDSSDFYRNP-----V-APED--------RSRMNVPFTLADE-ELDKKFLAEAKAAGLVGLKG------------  325 (360)
T ss_pred             HHHHHHHhCCCcccC-----C-Chhh--------cCCcEEEEEcCCh-HHHHHHHHHHHHCCCcccCC------------
Confidence            888888887621111     0 1111        1346899998764 23345555543333222111            


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                       |.            ..+.+|+|++..++.+.|+.|.++|++
T Consensus       326 -~~------------~~g~vRiS~~~~nt~eei~~l~~~l~~  354 (360)
T PRK05355        326 -HR------------SVGGMRASIYNAMPLEGVQALVDFMKE  354 (360)
T ss_pred             -CC------------ccCcEEEECCCCCCHHHHHHHHHHHHH
Confidence             00            147899999988877777777777764

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.66  E-value=1.9e-14  Score=146.44  Aligned_cols=253  Identities=21%  Similarity=0.233  Sum_probs=169.8

Q ss_pred             CCCCCCC--CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          192 SFEYGRY--GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       192 ~~~Y~R~--~~p~~~~Le----~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      +|-.-||  |+..++.+|    ++..+++|++.+ +--.||+.|+.+++.++++|||+|+-.+..+++....-.. ..-.
T Consensus        57 GyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~-v~~s  135 (413)
T COG0112          57 GYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSP-VNFS  135 (413)
T ss_pred             CCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCC-CCcc
Confidence            4544554  455555554    566678999754 6678999999999999999999999999999885421100 0111


Q ss_pred             C--cEEEEe--C----CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCC-----CCCCc
Q 009523          265 G--ITATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLN  331 (532)
Q Consensus       265 G--v~v~~v--d----~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~-----a~~~~  331 (532)
                      |  .++...  +    ..|.|++++.+.+.++|+|++  -.+-.-+..|.+++.++|++.|++|++|-++     +.+..
T Consensus       136 G~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~--G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~  213 (413)
T COG0112         136 GKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIA--GGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH  213 (413)
T ss_pred             ceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEE--CccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC
Confidence            2  222222  2    128999999998889999997  2234567889999999999999999999993     34566


Q ss_pred             ccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHh--hhcCCCccHHHHHHH---HHhHH-HHHHHHHHH
Q 009523          332 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLH--HVLGGALNPNAAYLI---IRGMK-TLHLRVQQQ  404 (532)
Q Consensus       332 ~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~--~~~G~~~~~~~a~l~---l~~l~-tl~~r~~~~  404 (532)
                      .+|+.+ +|+|+.|.||.|.|+   .||++.+++ ++.+++.+..  ...|+.+.-..+..+   ...++ .+....++.
T Consensus       214 p~P~~~-AdvVTtTTHKTlrGP---rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qV  289 (413)
T COG0112         214 PNPLPH-ADVVTTTTHKTLRGP---RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQV  289 (413)
T ss_pred             CCCCCc-cceEeCCcccCCCCC---CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            789988 999999999999998   499999985 7888887632  122322111112111   11221 134555677


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcC
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALK  468 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L~  468 (532)
                      .+|++.|++.|.+. +++ +..-+.++|               ++-+.+..   +...++..+++..
T Consensus       290 v~NAkaLAe~l~~~-G~~-vvsGgTdnH---------------l~lVDl~~~~~~Gk~ae~~L~~~~  339 (413)
T COG0112         290 VKNAKALAEALKER-GFK-VVSGGTDNH---------------LVLVDLRSKGLTGKKAEAALERAG  339 (413)
T ss_pred             HHHHHHHHHHHHHc-CCe-EecCCccce---------------EEEEEcccCCCCHHHHHHHHHHcC
Confidence            79999999999885 332 222233332               56666652   2355666666654

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.66  E-value=7.3e-15  Score=143.39  Aligned_cols=211  Identities=18%  Similarity=0.243  Sum_probs=153.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH-
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME-  277 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle-  277 (532)
                      .......||.+||++.+.+++|+++++..|+..++.+++.|.|.|......|.+...-+ .++++++    .+|..|++ 
T Consensus       110 tq~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGi-rLckry~----h~dv~~l~~  184 (417)
T KOG1359|consen  110 TQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGI-RLCKRYR----HVDVFDLEH  184 (417)
T ss_pred             chHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhh-HHHhhhc----cchhHHHHH
Confidence            44567889999999999999999999999999999999999999999888888766555 2444432    23333333 


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc-------c--ccCCcEEEECCcc
Q 009523          278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-------L--SLGADLVLHSATK  348 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~-------l--~~gaDivv~S~sK  348 (532)
                      .+.++.+ .+.|+|.....-+..|.+.|+++|.+++++||.++++||++++++.-..       +  .-.+|++..+++|
T Consensus       185 ~l~~a~k-~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgK  263 (417)
T KOG1359|consen  185 CLISACK-MRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGK  263 (417)
T ss_pred             HHHHhhh-heEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhh
Confidence            2223333 3688999999999999999999999999999999999999887654211       1  1246899999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhC
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~~  418 (532)
                      .+||.+   ||+..++++++.-+++..+  .+...++|...-.+...+..   -...+++...+.+++.+.++..
T Consensus       264 AlGga~---GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a  335 (417)
T KOG1359|consen  264 ALGGAS---GGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA  335 (417)
T ss_pred             hhcCCC---CCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            999774   8999999999998876433  45566665432222222221   1223344556777777777653

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.66  E-value=2.7e-14  Score=151.62  Aligned_cols=235  Identities=12%  Similarity=0.085  Sum_probs=150.8

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc------CC-CEEEEcCCCCcchH-HHHHHhcccC----
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------AG-GHIVTTTDCYRKTR-IFIETVLPKM----  264 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~------~G-d~VIv~~~~y~~t~-~~~~~~l~~~----  264 (532)
                      .+.++...+|.++|++..+.+.+++++||++|+..+++....      +| ++||+.+..|++.. ..+. .....    
T Consensus        74 ~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~-~s~~~~~~~  152 (395)
T PRK03715         74 AFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMS-ASGKPGWDT  152 (395)
T ss_pred             cccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHh-hcCCccccc
Confidence            344666677777777765567899999999999999986641      23 57888888887742 2221 11100    


Q ss_pred             -----CcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------
Q 009523          265 -----GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------  329 (532)
Q Consensus       265 -----Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------  329 (532)
                           -..+..++..|++++++.+.+ ++++|++|..++..|.+.|    +++|.++|++||+++|+||++...      
T Consensus       153 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~  231 (395)
T PRK03715        153 IFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTL  231 (395)
T ss_pred             CCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcch
Confidence                 011223345689999999976 6999999999888888877    999999999999999999996531      


Q ss_pred             CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCC--CccHHHHHHHHHhHHHHHH--HHHHHH
Q 009523          330 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLIIRGMKTLHL--RVQQQN  405 (532)
Q Consensus       330 ~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~--~~~~~~a~l~l~~l~tl~~--r~~~~~  405 (532)
                      +.........|+++  ++|.++++  ...|.+++++++.....   ...++  ..+|..+..++..++.+..  .+++..
T Consensus       232 ~a~~~~gv~PDi~t--~gK~lg~G--~p~~av~~~~~i~~~~~---~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~  304 (395)
T PRK03715        232 FAYELSGIEPDIMT--LGKGIGGG--VPLAALLAKAEVAVFEA---GDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVR  304 (395)
T ss_pred             hhHhhcCCCCceee--ehhhhhCC--cceEEEEEccccccccC---CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Confidence            11222334568765  68999974  34667777777642111   11122  2357777766667666542  334444


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      +...++.+.|++...    .++ +          ...+|.|.|+.+++..
T Consensus       305 ~~g~~l~~~L~~l~~----~~~-i----------~~vrG~Glm~~i~l~~  339 (395)
T PRK03715        305 ARGEYLKEKLLELSE----ERG-L----------EGERGEGLLRALLLGK  339 (395)
T ss_pred             HHHHHHHHHHHHHhh----cCC-c----------CeEEcceeEEEEEecC
Confidence            555555555554210    011 1          1124678899999964

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.65  E-value=1.1e-13  Score=148.41  Aligned_cols=289  Identities=13%  Similarity=0.174  Sum_probs=180.1

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhccc---
Q 009523          197 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLPK---  263 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l~~---  263 (532)
                      .+.++...+|.++|+++.+  .+.+++++||++|+..+++....       +| .+||.....|++...........   
T Consensus        81 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~  160 (423)
T PRK05964         81 GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGM  160 (423)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccc
Confidence            4667888889999999875  36788999999999999875421       23 57888888898843222111100   


Q ss_pred             --------CCcEEEEeCCCC-----HHHHHHhhcC--CCeeEEEEeC-CCCCCCcccC----HHHHHHHHHhCCCEEEEE
Q 009523          264 --------MGITATVIDPAD-----MEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIVCID  323 (532)
Q Consensus       264 --------~Gv~v~~vd~~d-----le~Le~al~~--~~tklV~les-P~NptG~v~d----l~~I~~la~~~gi~lIvD  323 (532)
                              .++....++.+|     ++++++.+.+  .++.+|++|. +.+..|...+    +++|.++|++||+++|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D  240 (423)
T PRK05964        161 HALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD  240 (423)
T ss_pred             cccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence                    122222222334     7888888852  2688999988 5777787664    889999999999999999


Q ss_pred             CCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH---h-hhcCCC--ccHHHHHHHH
Q 009523          324 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H-HVLGGA--LNPNAAYLII  391 (532)
Q Consensus       324 et~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~---~-~~~G~~--~~~~~a~l~l  391 (532)
                      |++...      +........+|+++  ++|.++++. ...|++++++++.+.+...   . ..++++  .+|..+..++
T Consensus       241 Ev~tg~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~  317 (423)
T PRK05964        241 EIATGFGRTGTLFACEQAGVSPDIMC--LSKGLTGGY-LPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAAN  317 (423)
T ss_pred             chhhCCCcCcchhHHHhcCCCCCeee--eehhhhcCc-ccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHH
Confidence            996422      11122334567765  779997653 2467788899988877531   1 112332  4677766666


Q ss_pred             HhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHHc
Q 009523          392 RGMKTLH--LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDAL  467 (532)
Q Consensus       392 ~~l~tl~--~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--~~~~~~l~~L  467 (532)
                      ..++.+.  ..+++..+..+++.+.|++...     +|.+.          ..++.|.++.|++.++.  .....+...|
T Consensus       318 a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~i~----------~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l  382 (423)
T PRK05964        318 ASLDLFEDEPVLERVAALSAGLAEGLEPFRD-----LPGVA----------DVRVLGAIGAVELDRPVLERDGPALRAFA  382 (423)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc-----CCCeE----------EeecccEEEEEEeccCcchhHHHHHHHHH
Confidence            6666443  2344555566666666665311     22211          12456889999997532  1345666666


Q ss_pred             CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          468 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       468 ~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      ...++-++.                            ..+.|||+..+    ++++.+++.|+++|++
T Consensus       383 ~~~Gv~v~~----------------------------~~~~lR~~p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        383 LERGVLLRP----------------------------LGNTIYLMPPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             HHCCeEEEe----------------------------cCCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence            544433321                            02468998775    4455556666666654

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.64  E-value=2.3e-14  Score=151.37  Aligned_cols=214  Identities=19%  Similarity=0.226  Sum_probs=149.6

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe--C----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--D----  272 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v--d----  272 (532)
                      ++|+..+||+++++++|.+.++.++||+.|++.+....++|||.|  +.+.|..+....   ....|....-+  +    
T Consensus        69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ah---Ie~~Gav~vDi~~dea~~  143 (450)
T TIGR02618        69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYH---QEKNGATFVDIIIDEAHD  143 (450)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHH---HHhCCeEEEeeecccccc
Confidence            688999999999999999999999999999888776778999977  667775554321   12334332222  1    


Q ss_pred             -----C----CCHHHHHHhhcCC---CeeEEEEeCCCCCC-Cccc---CHHHHHHHHHhCCCEEEEECCCCC--CC----
Q 009523          273 -----P----ADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFAT--PL----  330 (532)
Q Consensus       273 -----~----~dle~Le~al~~~---~tklV~lesP~Npt-G~v~---dl~~I~~la~~~gi~lIvDet~a~--~~----  330 (532)
                           .    .|+++|+++|++.   ++++|.+++++|.. |.+.   ++++|.++|++||++||.|.+...  .+    
T Consensus       144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~  223 (450)
T TIGR02618       144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKE  223 (450)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhc
Confidence                 1    2799999999762   35688888999865 7885   478999999999999999999432  11    


Q ss_pred             -----ccccc-------ccCCcEEEECCccccCCCCCcEEEEEE-eChHHHHHHHHHhhhcCCC-----ccHHHHHHHHH
Q 009523          331 -----NQKAL-------SLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGA-----LNPNAAYLIIR  392 (532)
Q Consensus       331 -----~~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv-~~~~li~~l~~~~~~~G~~-----~~~~~a~l~l~  392 (532)
                           ...+.       -..+|.++.|+.|..+.+   +||+++ ++++++++++.+...+++.     ++.-....+..
T Consensus       224 re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~  300 (450)
T TIGR02618       224 REQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAI  300 (450)
T ss_pred             ccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHH
Confidence                 11122       236899999999998877   478888 6778999988876554331     22212122233


Q ss_pred             hHHHHHH--HHHHHHHHHHHHHHHHHhCCCc
Q 009523          393 GMKTLHL--RVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       393 ~l~tl~~--r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      +++....  ..++...++++|++.|.+. +|
T Consensus       301 gL~e~~~~~y~~~r~~~a~~La~~L~~~-Gv  330 (450)
T TIGR02618       301 GIREAVDYEYIEHRVKQVRYLGDKLKAA-GV  330 (450)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            4444322  2334446689999999886 44

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.64  E-value=1.3e-13  Score=148.69  Aligned_cols=292  Identities=15%  Similarity=0.160  Sum_probs=182.4

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc----CC-CEEEEcCCCCcchHHHHHHhc---------
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETVL---------  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~----~G-d~VIv~~~~y~~t~~~~~~~l---------  261 (532)
                      +.+|...+|.++|+++...  +.+++++||++|+..+++....    .| .+||.....|++........-         
T Consensus       121 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~  200 (459)
T PRK11522        121 LLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPF  200 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence            4578888999999998753  4688889999999999874421    12 368888888888432111110         


Q ss_pred             ccCCcEEEEeCCCCHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC---
Q 009523          262 PKMGITATVIDPADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  329 (532)
Q Consensus       262 ~~~Gv~v~~vd~~dle~Le~al~~-----~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~---  329 (532)
                      ....-.+..++..|.+++++.++.     .++.+|++|......|.+.|    ++++.++|++||+++|+||++...   
T Consensus       201 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRt  280 (459)
T PRK11522        201 MPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRT  280 (459)
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCcc
Confidence            011112345566688888888752     35889999999988898887    899999999999999999996321   


Q ss_pred             ---CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHH--HHH
Q 009523          330 ---LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHL--RVQ  402 (532)
Q Consensus       330 ---~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~--~~~~a~l~l~~l~tl~~--r~~  402 (532)
                         +.......-.|+++  ++|.+|++- ...|.+++++++.+.+......++++.  +|..+..++..++.+..  .++
T Consensus       281 G~~~a~e~~gv~PDivt--~gK~lggG~-~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~  357 (459)
T PRK11522        281 GKMFACEHENVQPDILC--LAKALGGGV-MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPA  357 (459)
T ss_pred             chhhhhhccCCCCCEEE--echhhhCCC-ccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence               11222333468875  899998641 135666677777766532111234444  77777777777776542  233


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      +..+..+++.+.|++..    -.+|.+         -...+|.|.|+.+++..+ +....+...+...++-+...     
T Consensus       358 ~~~~~g~~l~~~L~~l~----~~~~~~---------i~~VrG~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~-----  418 (459)
T PRK11522        358 QAEQKGDYLLDGFRQLA----REYPDL---------VQEARGKGMLMAIEFVDN-EIGYNFASEMFRQRVLVAGT-----  418 (459)
T ss_pred             HHHHHHHHHHHHHHHHH----HhCCCc---------eeeEEeceeEEEEEecCc-hHHHHHHHHHHHCCeEEEec-----
Confidence            34444555555554321    012210         012256788999999743 34556666665555443211     


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                          +...+.||+...+    ++.+++++.|+++|++
T Consensus       419 --------------------~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~  451 (459)
T PRK11522        419 --------------------LNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA  451 (459)
T ss_pred             --------------------CCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                                0124678887765    4556666677666653

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.64  E-value=2e-14  Score=150.87  Aligned_cols=284  Identities=12%  Similarity=0.051  Sum_probs=170.1

Q ss_pred             hhHHHHHHHHHhhhCC--C-cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCH
Q 009523          201 PTTVVVEEKMSALEGA--E-STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  276 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--~-~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dl  276 (532)
                      ...++.++.++++++.  + +++++ +||+.+++.++.+++.+ +.+++....|+.............+ ++..++....
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~  118 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG  118 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence            5577789999999997  2 35554 55889999999998743 3444555666654433323322233 4555543323


Q ss_pred             HHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCccccCCCCC
Q 009523          277 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHND  355 (532)
Q Consensus       277 e~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~lgg~gd  355 (532)
                      +.++..+.+ ++++|.+.+..|.||.+.|+++|   +|++|++++||.+++.+. +.+..+  +|++++|.+|++|++++
T Consensus       119 ~~~~~~~~~-~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~G  192 (361)
T TIGR01366       119 SAPEPQADP-GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGG  192 (361)
T ss_pred             CCCCCccCC-CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCc
Confidence            344444555 69999999999999999999887   588999999999976543 233332  89999999999999862


Q ss_pred             cEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHH
Q 009523          356 VLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTA  408 (532)
Q Consensus       356 ~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a  408 (532)
                        .++++.++++++++.....                     ..-++++....+.+..+++.      +..+.+++.+.+
T Consensus       193 --l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~  270 (361)
T TIGR01366       193 --LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSS  270 (361)
T ss_pred             --eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence              4556668877766542110                     00112222222233333333      233456666778


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      +++.++|++.+.++.+ .+.    +.+.      ...-..++|  +.+ .....+.+.|+..++.+..|..         
T Consensus       271 ~~l~~~l~~~~~~~~~-~~~----~~~~------s~~v~~v~~--~~g-~~~~~v~~~L~~~gI~i~~~~~---------  327 (361)
T TIGR01366       271 SRLYSWAQERPYATPF-VTD----PGKR------SQVVGTIDF--VDD-IDAATVAKILRANGIVDTEPYR---------  327 (361)
T ss_pred             HHHHHHHHhCCCcccC-CCC----hhhc------ccceEEEEC--CCc-cCHHHHHHHHHHCCCeeccCcc---------
Confidence            8888888887654221 111    1100      001134555  332 2334444555444554432200         


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                  ..  .++.+|+|+...++.+.++.|.++|+.
T Consensus       328 ------------~l--~~~~vRis~~~~~t~~di~~l~~al~~  356 (361)
T TIGR01366       328 ------------KL--GRNQLRVAMFPAIDPDDVEALTECVDW  356 (361)
T ss_pred             ------------cc--CCCcEEEEcCCCCCHHHHHHHHHHHHH
Confidence                        01  246799999987777777777766653

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.63  E-value=7.8e-14  Score=134.97  Aligned_cols=219  Identities=16%  Similarity=0.238  Sum_probs=164.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      ..|....+-+.|++++|.+.+-++.+.-+|=.+++.+++++||.|++....|..++    ..+++.|.++..++..    
T Consensus        59 ~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pe  134 (382)
T COG1103          59 TKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPE  134 (382)
T ss_pred             cCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCc
Confidence            35777777777999999987777766669999999999999999999999998876    3456778888888743    


Q ss_pred             ---CHHHHHHhh----cC--CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEE
Q 009523          275 ---DMEGLEAAL----NN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLH  344 (532)
Q Consensus       275 ---dle~Le~al----~~--~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~  344 (532)
                         +++...+.|    ++  ..+.+.++.+|....|.+.|.+.++++|+++|+++++..+|..+ .+.+..+.|+|+++.
T Consensus       135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVg  214 (382)
T COG1103         135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVG  214 (382)
T ss_pred             eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEe
Confidence               455544444    22  14789999999999999999999999999999999999998765 456777889999999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHh-h--------hcCCCccHHHHHHHHHhHHHHHHHHH---HHHHHHHHHH
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H--------VLGGALNPNAAYLIIRGMKTLHLRVQ---QQNSTALRMA  412 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-~--------~~G~~~~~~~a~l~l~~l~tl~~r~~---~~~~~a~~la  412 (532)
                      |.||.++..+  ..|++..+.++.+.+-+.. .        .+|.+.-......++..+.....|++   +-.++++++.
T Consensus       215 SGHKsmAAs~--PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv  292 (382)
T COG1103         215 SGHKSMAASA--PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFV  292 (382)
T ss_pred             cCccchhccC--CeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998766  5799988888887653322 1        34544322222223344444444444   3447788888


Q ss_pred             HHHHhCCCceE
Q 009523          413 KILEAHPKVKR  423 (532)
Q Consensus       413 ~~L~~~p~v~~  423 (532)
                      +.|++..++..
T Consensus       293 ~elEkigg~~q  303 (382)
T COG1103         293 AELEKIGGVKQ  303 (382)
T ss_pred             HHHHHhhhHHH
Confidence            88888765543

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.62  E-value=2.4e-13  Score=139.35  Aligned_cols=272  Identities=17%  Similarity=0.194  Sum_probs=170.8

Q ss_pred             EEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----CHHHHHHhhcCC-------
Q 009523          219 TVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNN-------  286 (532)
Q Consensus       219 ~i~~sSG-~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----dle~Le~al~~~-------  286 (532)
                      -++.++| +.++..+++.++..||+|++...+|.+..    ...+..|+.+..|+.+    ++|.|++.+...       
T Consensus       126 diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL----~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~  201 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL----QSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKK  201 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH----HhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccC
Confidence            4555555 59999999999999999999999998865    3456678888888754    788888877532       


Q ss_pred             -CeeEEEE-eCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCC----Cc---------c-----------ccc--
Q 009523          287 -NVSLFFT-ESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATP----LN---------Q-----------KAL--  335 (532)
Q Consensus       287 -~tklV~l-esP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~----~~---------~-----------~~l--  335 (532)
                       +++++|. .+-+||||....+   ++|.+||++|++++|+|+.|.-.    +.         +           ..+  
T Consensus       202 ~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflsl  281 (472)
T KOG0634|consen  202 PKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSL  281 (472)
T ss_pred             CCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccc
Confidence             3556664 3345999999985   48999999999999999995321    00         0           011  


Q ss_pred             -ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHH---------HHHHHHhHHHHHHHHHHHH
Q 009523          336 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA---------AYLIIRGMKTLHLRVQQQN  405 (532)
Q Consensus       336 -~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~---------a~l~l~~l~tl~~r~~~~~  405 (532)
                       ..|..|-..||||.++++  ++.||+.+++.+++++-.........++.+.         .|....-++++........
T Consensus       282 DtdGrVIr~dSFSKiiaPG--lRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt  359 (472)
T KOG0634|consen  282 DTDGRVIRNDSFSKIIAPG--LRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT  359 (472)
T ss_pred             cccccEEeccchhhhhcCc--ceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             125557788999999976  4789999999888876543332221122222         2222111233322222333


Q ss_pred             HHHHHHHHHHHhC-CCc-eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc-------CCHHHHHHHHHH-cCCCceeec
Q 009523          406 STALRMAKILEAH-PKV-KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD-------GDLTATIKFIDA-LKIPYIAPS  475 (532)
Q Consensus       406 ~~a~~la~~L~~~-p~v-~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~-------g~~~~~~~~l~~-L~~~~i~vs  475 (532)
                      ..+..+...|.+. |.- -.+..|.                .|.++||+++       ....+.+.++.. +...++-+-
T Consensus       360 ~Rrn~~l~Al~kylp~~~~~~~~P~----------------aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v  423 (472)
T KOG0634|consen  360 ERRNALLSALDKYLPKSVCEYHPPK----------------AGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLV  423 (472)
T ss_pred             HHHHHHHHHHHHhCCCCeeEEecCC----------------cceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEe
Confidence            4444455555443 443 3333332                5778899996       333444444432 334466666


Q ss_pred             CCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHH
Q 009523          476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA  528 (532)
Q Consensus       476 ~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~A  528 (532)
                      .|..+...  |...              -..-++|+|+...+.+++.+.+++-
T Consensus       424 ~G~~F~v~--p~~s--------------~~kiffRls~a~a~~e~l~~g~~rf  460 (472)
T KOG0634|consen  424 CGSWFMVD--PESS--------------WSKIFFRLSIAFAEPEKLDEGIERF  460 (472)
T ss_pred             cCceeEEc--CccC--------------CCcceEEEEeecCCHHHHHHHHHHH
Confidence            77655432  2210              0123899999998888777766643

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.62  E-value=2e-13  Score=146.08  Aligned_cols=292  Identities=15%  Similarity=0.166  Sum_probs=173.5

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc-----ccC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PKM  264 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l-----~~~  264 (532)
                      +..+.++...+|.++|+++.+.   +.+++++||++|+..+++...  ....+|+.....|+|........-     .+.
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~  156 (421)
T PRK09792         77 YQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI  156 (421)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence            4445778888899999998642   578899999999999987542  223578888888888432111110     011


Q ss_pred             C-----cEEEEeCC----------CCHHHHHHhhc----CCCeeEEEEeCCCCCCCccc-C---HHHHHHHHHhCCCEEE
Q 009523          265 G-----ITATVIDP----------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVC  321 (532)
Q Consensus       265 G-----v~v~~vd~----------~dle~Le~al~----~~~tklV~lesP~NptG~v~-d---l~~I~~la~~~gi~lI  321 (532)
                      +     ..+..++.          .+++.+++.++    ..++++|++|...+++|... |   +++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (421)
T PRK09792        157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI  236 (421)
T ss_pred             CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            1     01222222          13578888775    23689999999999999765 6   8899999999999999


Q ss_pred             EECCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH
Q 009523          322 IDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  395 (532)
Q Consensus       322 vDet~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~  395 (532)
                      +||++... .     .........|++  +++|.++++  ...|++++++++++.+...........+|..+..++..++
T Consensus       237 ~DEv~tg~gr~G~~~a~~~~~~~pDi~--t~gK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~  312 (421)
T PRK09792        237 ADEVQSGFARTGKLFAMDHYADKPDLM--TMAKSLAGG--MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLN  312 (421)
T ss_pred             EeccccCCCCCCchhHHHhcCCCCcEE--EeehhhcCC--CceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHH
Confidence            99996532 1     112222346754  589999864  4678889998888776532221122345666665555555


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH------HHHHHHHHHc
Q 009523          396 TLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL------TATIKFIDAL  467 (532)
Q Consensus       396 tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~------~~~~~~l~~L  467 (532)
                      .+..  .+++..+..+++.+.|++..    -.+|..          .+.+|.|.+++++++++.      .....+...+
T Consensus       313 ~l~~~~~~~~~~~~g~~l~~~l~~l~----~~~p~v----------~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~  378 (421)
T PRK09792        313 IIDKESLCERANQLGQRLKNTLIDAK----ESVPAI----------AAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRA  378 (421)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHH----HhCCCc----------ceecccceEEEEEecCCccCCcchHHHHHHHHHH
Confidence            4422  12222233333333333210    011211          122567899999997431      2345566555


Q ss_pred             CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHH
Q 009523          468 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQAL  529 (532)
Q Consensus       468 ~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL  529 (532)
                      ...++.+..                         .|...+.|||...+    ++.+..++.|.++|
T Consensus       379 ~~~Gv~i~~-------------------------~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l  419 (421)
T PRK09792        379 LAQGLLLLT-------------------------CGAYGNVIRFLYPLTIPDAQFDAAMKILQDAL  419 (421)
T ss_pred             HHCCcEEee-------------------------cCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence            544543311                         01124789999776    34445555555555

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.61  E-value=1.4e-13  Score=147.54  Aligned_cols=287  Identities=17%  Similarity=0.182  Sum_probs=180.4

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHh-------cc-c--C
Q 009523          198 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------LP-K--M  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~-ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~-------l~-~--~  264 (532)
                      +.++...+|.++|+++. +.+.+++++||++|+..+++....  .+++||..++.|++........       .. .  .
T Consensus        87 ~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  166 (426)
T PRK00062         87 APTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP  166 (426)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence            45677788999999876 346788999999999999986543  3678999999999854221111       00 0  0


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC---
Q 009523          265 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  329 (532)
Q Consensus       265 Gv------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~---  329 (532)
                      +.      ....++..|++++++.++.  .++++|++|.....+|.+.+    +++|.++|++||+++|+||++...   
T Consensus       167 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g  246 (426)
T PRK00062        167 GVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA  246 (426)
T ss_pred             CCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC
Confidence            11      1233455689999988852  36899999977777899988    899999999999999999996532   


Q ss_pred             --CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hc--CCCccHHHHHHHHHhHHHHHH--HHH
Q 009523          330 --LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VL--GGALNPNAAYLIIRGMKTLHL--RVQ  402 (532)
Q Consensus       330 --~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~--G~~~~~~~a~l~l~~l~tl~~--r~~  402 (532)
                        ..........|+  .+++|.++++  ...|++++++++++.++.... ..  ....+|..+..++..++.+..  ..+
T Consensus       247 ~~~~~~~~~~~pDi--~~~gK~l~~G--~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~  322 (426)
T PRK00062        247 LGGAQGYYGVTPDL--TTLGKIIGGG--LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYE  322 (426)
T ss_pred             CccHHHHhCCCcch--HhhhhHhhCC--CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHH
Confidence              111112223565  4689999853  346777888888887753211 11  123567777766666665543  334


Q ss_pred             HHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHHH
Q 009523          403 QQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFIDA  466 (532)
Q Consensus       403 ~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------------~~~~~~~l~~  466 (532)
                      +..+..+++.+.|++    ++.+..+                  ++.|.|+.+++..+            ...+..+.+.
T Consensus       323 ~~~~~~~~~~~~l~~~~~~~~~~~~v------------------rg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~  384 (426)
T PRK00062        323 ELEALTKRLAEGLKEAAKKAGIPLTV------------------NRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHA  384 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEE------------------EEecceEEEEEecCCCcchhhhccccHHHHHHHHHH
Confidence            444555555555543    2322111                  34688999988531            1234566666


Q ss_pred             cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          467 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       467 L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +...++-+...+.      +                   .-.+.+.+..++.+++++.|++++.+
T Consensus       385 l~~~Gv~v~~~~~------~-------------------~~~~~~~~t~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        385 MLDEGVYLAPSQF------E-------------------AGFVSAAHTDEDIEKTLEAARKAFAA  424 (426)
T ss_pred             HHHCCeEeecCCc------C-------------------ceeeeccCCHHHHHHHHHHHHHHHHh
Confidence            6555544432110      0                   01123344456677778888777764

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.61  E-value=3.7e-13  Score=144.67  Aligned_cols=293  Identities=15%  Similarity=0.140  Sum_probs=174.5

Q ss_pred             CCCCchhHHHHHHHHHhhh-CC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHH-HHHhc-----c-cC
Q 009523          196 GRYGNPTTVVVEEKMSALE-GA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IETVL-----P-KM  264 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~-ga-~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~-~~~~l-----~-~~  264 (532)
                      +.+.++...+|.++|+++. +. +.+++++||++|+..+++...  ....+|+..+..|++.... +....     . .+
T Consensus        81 ~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~  160 (433)
T PRK08117         81 GVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYY  160 (433)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccC
Confidence            3457788899999999998 33 456666899999999998432  2235788888888874321 10000     0 00


Q ss_pred             C---cEEEEeCC-----------------CCHHHHHHhhc----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhC
Q 009523          265 G---ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  316 (532)
Q Consensus       265 G---v~v~~vd~-----------------~dle~Le~al~----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~  316 (532)
                      +   ..+.+++.                 .+++++++.++    .+++.+|++|......|.+.+    +++|.++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~  240 (433)
T PRK08117        161 QPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH  240 (433)
T ss_pred             CCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc
Confidence            0   01122221                 14566776654    236899999999988899988    99999999999


Q ss_pred             CCEEEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHH
Q 009523          317 GAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       317 gi~lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                      |+++|+||++...-.      ......-.|+  .+++|.++++  ...|++++++++++.+...........+|..+..+
T Consensus       241 g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G--~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa  316 (433)
T PRK08117        241 GILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIASG--LPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAA  316 (433)
T ss_pred             CCEEEEecchhccCccccchhHhhcCCCCCE--eehhhhccCC--CcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHH
Confidence            999999999764211      1112223455  5799999853  46788889988887764322111123467777777


Q ss_pred             HHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----HHHHHHH
Q 009523          391 IRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LTATIKF  463 (532)
Q Consensus       391 l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----~~~~~~~  463 (532)
                      +..++.+..  .+++..+..+++.+.|++...    .+|..          ...+|.|.++++++..+     ......+
T Consensus       317 ~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~----------~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~  382 (433)
T PRK08117        317 LATLEVIKEEKLLDNANEMGAYALERLEVLKE----KHPVI----------GDVRGIGLMIGIEIVDPDGEPDGDAVEKI  382 (433)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----cCCce----------eeeecCCcEEEEEEecCCCCcchHHHHHH
Confidence            777765532  223333444445554543210    12211          11256788999998531     1234455


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      .+.+...|+.+...                         |...+.|||+..+    ++.++.++.|.+++++
T Consensus       383 ~~~l~~~Gv~~~~~-------------------------g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  429 (433)
T PRK08117        383 LDKCLEKGLLFYLC-------------------------GNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE  429 (433)
T ss_pred             HHHHHHCCCEEeec-------------------------CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            55554444322110                         1124689998654    4556666666666653

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.60  E-value=3.5e-13  Score=145.03  Aligned_cols=284  Identities=14%  Similarity=0.159  Sum_probs=172.4

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchH-HHHHHh-cc-----cCC-
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-LP-----KMG-  265 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~-~~~~~~-l~-----~~G-  265 (532)
                      +.++...+|.++|+++.+.  +.+++++||++|+..+++...  ....+|+.-...|++.. ..+... ..     .++ 
T Consensus        81 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~  160 (443)
T PRK08360         81 GFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE  160 (443)
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC
Confidence            3467778899999998764  468888999999999987542  23357888777887742 211100 00     011 


Q ss_pred             -cEEEEeCC-----------------CCHHHHHHhhc----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCE
Q 009523          266 -ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  319 (532)
Q Consensus       266 -v~v~~vd~-----------------~dle~Le~al~----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~  319 (532)
                       ..+.+++.                 .+++.+++.++    ..++++|++|...||+|.+.+    +++|.++|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~l  240 (443)
T PRK08360        161 LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGIL  240 (443)
T ss_pred             CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence             11222221                 12344556663    236999999987899998876    78999999999999


Q ss_pred             EEEECCCCCC-Cc-----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh
Q 009523          320 VCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  393 (532)
Q Consensus       320 lIvDet~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~  393 (532)
                      +|+||++... ..     ........|++  +++|.++++  ...|++++++++++.+...........++..+..++..
T Consensus       241 lI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~  316 (443)
T PRK08360        241 LVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLGGG--LPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAV  316 (443)
T ss_pred             EEEeccccCCCcCccchhhhhcCCCCCEE--EecccccCC--ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHH
Confidence            9999996532 11     11122345776  479999953  56788999998888775432222233456666666666


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HHHH
Q 009523          394 MKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTAT  460 (532)
Q Consensus       394 l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~~~~  460 (532)
                      ++.+..  ..++..+..+++.+.|++    +|.+.                  ..+|.|.|+.+++..+       ...+
T Consensus       317 l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~------------------~vrg~Gl~~gie~~~~~~~~~~~~~~~  378 (443)
T PRK08360        317 IEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIG------------------DVRGIGLMIGVDLVKDRETKERAYEEA  378 (443)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCee------------------eeeccceEEEEEEecCCcccCccHHHH
Confidence            665432  233333444445554443    22222                  2256788999998532       1234


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                      ..+...+...++-+..                           ...+.+||+..+    ++.+.+++.|+++|.
T Consensus       379 ~~~~~~l~~~Gi~~~~---------------------------~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~  425 (443)
T PRK08360        379 AKVVWRAWELGLIVTF---------------------------FSGNVLRIQPPLTIEKEVLDEGLDILEEAIE  425 (443)
T ss_pred             HHHHHHHHHCCeEEee---------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            4555555544433221                           013578886665    445566666666654

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.60  E-value=4.9e-13  Score=144.03  Aligned_cols=254  Identities=14%  Similarity=0.155  Sum_probs=157.0

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc-------ccC
Q 009523          197 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-------PKM  264 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l-------~~~  264 (532)
                      .+.++...+|.++|+++.+.   +.+.+++||++|+..+++...  ....+||..+..|++.......+-       ..+
T Consensus        81 ~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~  160 (445)
T PRK08593         81 YMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKY  160 (445)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCC
Confidence            35688889999999998753   357777999999999987432  223568888888888432111110       001


Q ss_pred             C---cEEEEeCCCC-----------------HHHHHHhhc----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhC
Q 009523          265 G---ITATVIDPAD-----------------MEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  316 (532)
Q Consensus       265 G---v~v~~vd~~d-----------------le~Le~al~----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~  316 (532)
                      +   ..+..++..|                 ++++++.+.    ..++.+|++|.+.+..|.+.+    +++|.++|++|
T Consensus       161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~  240 (445)
T PRK08593        161 GPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH  240 (445)
T ss_pred             CCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            0   1122233111                 134554442    236999999999988888876    89999999999


Q ss_pred             CCEEEEECCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHH
Q 009523          317 GAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       317 gi~lIvDet~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                      |+++|+||++... .     .........|+++  ++|.++++  ..+|++++++++++.+......+....+|..+..+
T Consensus       241 g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t--~gK~l~~G--~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa  316 (445)
T PRK08593        241 GILFAVDDIQQGLGRTGKWSSISHFNITPDLMS--FGKSLAGG--MPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAA  316 (445)
T ss_pred             CCEEEEechhhCCCcCchHHHHHhcCCCCCEee--ecccccCC--cccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHH
Confidence            9999999996421 1     1122233467775  89999854  45788999999888775322222333567777666


Q ss_pred             HHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------H
Q 009523          391 IRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------L  457 (532)
Q Consensus       391 l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~  457 (532)
                      +..++.+..  .+++..+..+++.+.|++    +|.+..                  .+|.|.++.+++..+       .
T Consensus       317 ~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~------------------vrG~Gl~~gi~l~~~~~~~~~~~  378 (445)
T PRK08593        317 LATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGD------------------VRGYGLSIGIDIVSDKKLKTRDN  378 (445)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEE------------------EeccceEEEEEEecCCCcCCCcH
Confidence            666665532  233334444555555543    332322                  256788888888531       2


Q ss_pred             HHHHHHHHHcCCCce
Q 009523          458 TATIKFIDALKIPYI  472 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i  472 (532)
                      .....+...+...++
T Consensus       379 ~~~~~~~~~~~~~Gv  393 (445)
T PRK08593        379 EAALKICNYCFEHGV  393 (445)
T ss_pred             HHHHHHHHHHHHCCe
Confidence            234556665544443

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.60  E-value=1.1e-12  Score=140.32  Aligned_cols=288  Identities=15%  Similarity=0.134  Sum_probs=173.6

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh-c----ccC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-L----PKM  264 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~-l----~~~  264 (532)
                      +....++...+|.++|+++...   +.+++++||++|+..+++...  ....+|+.....|+|.......+ -    ...
T Consensus        70 ~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~  149 (420)
T TIGR00700        70 FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKS  149 (420)
T ss_pred             ccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCccccc
Confidence            3445677788899999988742   568889999999999987432  23357888888888843221111 0    011


Q ss_pred             Cc-----EEEEeCCC----------------CHHHHHHhhc----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009523          265 GI-----TATVIDPA----------------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  315 (532)
Q Consensus       265 Gv-----~v~~vd~~----------------dle~Le~al~----~~~tklV~lesP~NptG~v~d----l~~I~~la~~  315 (532)
                      +.     .+..++..                +++.+++.+.    ..++.+|++|.....+|.+.+    +++|.++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~  229 (420)
T TIGR00700       150 GFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE  229 (420)
T ss_pred             CCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence            11     12222210                2456776652    236999999999888888776    8899999999


Q ss_pred             CCCEEEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHH
Q 009523          316 KGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  389 (532)
Q Consensus       316 ~gi~lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l  389 (532)
                      ||+++|+||++.....      ........|+++  ++|.++++  ...|++++++++++.+...........+|..+..
T Consensus       230 ~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~G--~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aa  305 (420)
T TIGR00700       230 HGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLADG--LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAA  305 (420)
T ss_pred             cCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccCC--cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHH
Confidence            9999999999654211      122233467665  89999953  5688899999888776532221222345777666


Q ss_pred             HHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------CH
Q 009523          390 IIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DL  457 (532)
Q Consensus       390 ~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g------~~  457 (532)
                      ++..++.+..  ..++..+..+++.+.|++    +|.+..+                  ++.|.++++++..      +.
T Consensus       306 a~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v------------------rg~G~~~~i~~~~~~~~~~~~  367 (420)
T TIGR00700       306 ALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDV------------------RGLGAMIAVELVDPGTTEPDA  367 (420)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEe------------------eccceEEEEEEecCCCCCccH
Confidence            6555554321  112222333334444433    3322222                  3467899998832      12


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHH
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQAL  529 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL  529 (532)
                      .....+++.+...++.+..|+.                         ..+.|||+..+    ++.++.++.|.++|
T Consensus       368 ~~~~~l~~~~~~~Gv~i~p~~~-------------------------f~~~lRl~p~l~~~~~~l~~~~~~l~~~l  418 (420)
T TIGR00700       368 GLAERIATAAHAAGLLLLTCGM-------------------------FGNIIRFLPPLTIGDELLSEGLDILCAIL  418 (420)
T ss_pred             HHHHHHHHHHHHCCeEEeccCC-------------------------CCCEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence            3456677666555655543321                         13689999865    33344455555554

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.60  E-value=9e-13  Score=142.04  Aligned_cols=290  Identities=15%  Similarity=0.127  Sum_probs=175.2

Q ss_pred             CCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcc-----cCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP-----KMG  265 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~-----~~G  265 (532)
                      .-..++...+|.++|+++.+.   +.+++++||++|+..+++..  ....++||+....|++.......+-.     ..+
T Consensus        94 ~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~  173 (443)
T PRK06058         94 MVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSG  173 (443)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccc
Confidence            334567788899999988753   46888999999999998732  22347899999999885422111100     001


Q ss_pred             -----cEEEEeC----CCC---------------HHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCC
Q 009523          266 -----ITATVID----PAD---------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  317 (532)
Q Consensus       266 -----v~v~~vd----~~d---------------le~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~g  317 (532)
                           ..+..++    ..+               ++.+++.+..+++.+|++|......|.+.|    +++|.++|++||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~g  253 (443)
T PRK06058        174 FGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENG  253 (443)
T ss_pred             cCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence                 0111111    111               233444444346999999877765666654    889999999999


Q ss_pred             CEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHH
Q 009523          318 AIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII  391 (532)
Q Consensus       318 i~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l  391 (532)
                      +++|.||++...-      .......-.|+++  ++|.++++  ...|++++++++++.+...........+|..+..++
T Consensus       254 illI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK~l~~G--~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~  329 (443)
T PRK06058        254 VVFIADEVQTGFARTGAWFACEHEGIVPDLIT--TAKGIAGG--LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAAL  329 (443)
T ss_pred             CEEEEeccccCCCcChhhhHHHhcCCCCCEEE--EcccccCC--CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHH
Confidence            9999999964321      1122233468887  57999854  467888888888877653322112234677777777


Q ss_pred             HhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------HHH
Q 009523          392 RGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------LTA  459 (532)
Q Consensus       392 ~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------~~~  459 (532)
                      ..++.+..  ..++..+..+++.+.|++    ++.+..                  .+|.|.|+.+++..+      .+.
T Consensus       330 a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G~~~~i~~~~~~~~~~~~~~  391 (443)
T PRK06058        330 AAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGD------------------VRGRGAMIAIELVKPGTTEPDAEL  391 (443)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEe------------------eeccceEEEEEEecCCCCCCcHHH
Confidence            77766532  122333334445555543    222222                  256788999998532      233


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhhC
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHAI  532 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~l  532 (532)
                      ...+++.+...++.+..++.                         ..+.||+...+    ++.++.++.|+++|+++
T Consensus       392 ~~~l~~~~~~~Gv~~~~~~~-------------------------~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        392 TKALAAAAHAAGVIVLTCGT-------------------------YGNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             HHHHHHHHHHCCeEEeccCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence            55666666555554433211                         13578886443    56677777777777653

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.60  E-value=5.6e-13  Score=142.90  Aligned_cols=289  Identities=14%  Similarity=0.162  Sum_probs=172.4

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh-cc----cCC--
Q 009523          198 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-LP----KMG--  265 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~-l~----~~G--  265 (532)
                      +.++...+|.+.|+++.+.   +.+++++||++|+..+++...  ....+||+..+.|++........ ..    ..|  
T Consensus        81 ~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~  160 (425)
T PRK08088         81 LAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG  160 (425)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence            4567777888999987763   478899999999988887542  23346777788898854332221 00    001  


Q ss_pred             -----cEEEEeCC--C------CHHHHHHhhc----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEC
Q 009523          266 -----ITATVIDP--A------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG  324 (532)
Q Consensus       266 -----v~v~~vd~--~------dle~Le~al~----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDe  324 (532)
                           +....++.  .      ++++|+++++    ..++++|++|...+..|.+.+    +++|.++|+++|+++|+||
T Consensus       161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De  240 (425)
T PRK08088        161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE  240 (425)
T ss_pred             CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence                 11111111  1      1556888775    236899999988755566555    8899999999999999999


Q ss_pred             CCCCC-Ccccc--c-ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--
Q 009523          325 TFATP-LNQKA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--  398 (532)
Q Consensus       325 t~a~~-~~~~~--l-~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--  398 (532)
                      ++... ..-..  . ..+.+.-+.|++|.++++  ...|++++++++++.+...........++..+..+...++...  
T Consensus       241 v~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G--~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~  318 (425)
T PRK08088        241 VQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG--FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE  318 (425)
T ss_pred             cccCCCcCcchhHHhhcCCCCCEEEEeccccCC--CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            97642 11111  1 234444467899999854  5689999999998887654333333456776666666665432  


Q ss_pred             HHHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-------CHHHHHHHHHHc
Q 009523          399 LRVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-------DLTATIKFIDAL  467 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-------~~~~~~~~l~~L  467 (532)
                      ..+++..+..+++.+.|.    .+|.+..+                  +|.|.++|+++..       +......+...+
T Consensus       319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v------------------~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~  380 (425)
T PRK08088        319 NLLQKANALGEKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFEDGDHSKPNAKLTAQIVARA  380 (425)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eccceEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence            122222222333333332    23332222                  3457899999942       123456666666


Q ss_pred             CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009523          468 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA  531 (532)
Q Consensus       468 ~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~~  531 (532)
                      ...++.+..++                         ...+.|||+++..    +.+..++.|.++++.
T Consensus       381 ~~~Gv~~~~~~-------------------------~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        381 RDKGLILLSCG-------------------------PYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             HhCCCEEecCC-------------------------CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence            54443322110                         1136799999853    344455666666653

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.60  E-value=4e-13  Score=142.16  Aligned_cols=288  Identities=16%  Similarity=0.168  Sum_probs=181.7

Q ss_pred             CCCCCc-hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcch-HHHHHHh-------
Q 009523          195 YGRYGN-PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKT-RIFIETV-------  260 (532)
Q Consensus       195 Y~R~~~-p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t-~~~~~~~-------  260 (532)
                      -.++.. +...++.++|.++...   +.+++.+||++|++++++..  ...+..||.....|++. ...+...       
T Consensus        92 ~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~  171 (447)
T COG0160          92 HTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYK  171 (447)
T ss_pred             cCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccc
Confidence            344433 6677788888887764   46888899999999999743  22345788888888773 2222110       


Q ss_pred             --cccCCcEEEEeCCC-----------------CHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC----HHHHHHH
Q 009523          261 --LPKMGITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDL  312 (532)
Q Consensus       261 --l~~~Gv~v~~vd~~-----------------dle~Le~al~~-----~~tklV~lesP~NptG~v~d----l~~I~~l  312 (532)
                        ...+.-.+..++..                 ..+.++..+..     .++.++++|......|.+.+    ++++.++
T Consensus       172 ~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~  251 (447)
T COG0160         172 AGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKL  251 (447)
T ss_pred             cCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHH
Confidence              01111223344311                 12345554422     25899999999999998876    7899999


Q ss_pred             HHhCCCEEEEECCCCC------CCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH-HhhhcCCCccHH
Q 009523          313 CHKKGAIVCIDGTFAT------PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LHHVLGGALNPN  385 (532)
Q Consensus       313 a~~~gi~lIvDet~a~------~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~-~~~~~G~~~~~~  385 (532)
                      |++||+++|+||++..      .+.+.....-.||++  ++|.+|++  ...|.+++++++.+.... ....++  -+|.
T Consensus       252 ~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~G--~Pl~avv~r~ei~~~~~g~~~~Tf~--GNpv  325 (447)
T COG0160         252 CREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGGG--LPLSAVVGRAEIMDWPPGGHGGTFG--GNPV  325 (447)
T ss_pred             HHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE--ecccccCC--CceeEEeccHHhcccCCcccCCCCC--cCHH
Confidence            9999999999999653      222344444579998  88999973  467888899888772211 222233  3677


Q ss_pred             HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----
Q 009523          386 AAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG----  455 (532)
Q Consensus       386 ~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g----  455 (532)
                      ++..++..|+.+..  -+++..+.-+++.+.|++    +|.|..                  .+|.|.|+.+++..    
T Consensus       326 a~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Igd------------------VRG~Glm~giE~v~d~~t  387 (447)
T COG0160         326 ACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGD------------------VRGLGLMIGVELVKDRDT  387 (447)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceec------------------ccccceEEEEEEecCCCC
Confidence            77777777765543  122222333344444432    333322                  26788999999863    


Q ss_pred             ---CHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHH
Q 009523          456 ---DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQA  528 (532)
Q Consensus       456 ---~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~A  528 (532)
                         +.+...++++.+...++-+..                         .|...+.|||..-+    |+.+..++.|+++
T Consensus       388 ~~p~~~~~~~i~~~~~~~Glil~~-------------------------~G~~~nviRi~PPL~is~e~~d~~l~il~~a  442 (447)
T COG0160         388 KEPDAELAAKIVARAFERGLLLLT-------------------------CGPHGNVLRILPPLTISDEELDEGLDILEEA  442 (447)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEec-------------------------cCCCCcEEEEeCCcccCHHHHHHHHHHHHHH
Confidence               235667777776655532211                         13346788887554    6778888888888


Q ss_pred             Hhh
Q 009523          529 LHA  531 (532)
Q Consensus       529 L~~  531 (532)
                      |..
T Consensus       443 l~~  445 (447)
T COG0160         443 LKE  445 (447)
T ss_pred             HHh
Confidence            864

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.59  E-value=1.5e-12  Score=139.41  Aligned_cols=289  Identities=14%  Similarity=0.154  Sum_probs=177.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcc-----c-
Q 009523          195 YGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----K-  263 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~-----~-  263 (532)
                      +..+.++...+|.++|+++..   .+.+++++||++|+..+++...  ....+|+.....|++.......+-.     + 
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~  156 (421)
T PRK06777         77 YQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKV  156 (421)
T ss_pred             ccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence            344567788889999998864   2578899999999999987432  2335788888888885322211100     0 


Q ss_pred             -CC---cEEEEeCCC----------CHHHHHHhhc----CCCeeEEEEeCCCCCCCcc-cC---HHHHHHHHHhCCCEEE
Q 009523          264 -MG---ITATVIDPA----------DMEGLEAALN----NNNVSLFFTESPTNPFLRC-VD---VKLVSDLCHKKGAIVC  321 (532)
Q Consensus       264 -~G---v~v~~vd~~----------dle~Le~al~----~~~tklV~lesP~NptG~v-~d---l~~I~~la~~~gi~lI  321 (532)
                       ++   -.+..++..          +++.+++.++    ..++.+|++|...+..|.. .|   +++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (421)
T PRK06777        157 GFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLI  236 (421)
T ss_pred             CCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence             00   011122211          2566777774    2368999999998888854 45   8899999999999999


Q ss_pred             EECCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH
Q 009523          322 IDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  395 (532)
Q Consensus       322 vDet~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~  395 (532)
                      +||++... .     .......-.|++  +++|.+++ | ...|++++++++++.+...........+|..+..++..++
T Consensus       237 ~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~  312 (421)
T PRK06777        237 ADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLGG-G-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLD  312 (421)
T ss_pred             EechhhCCccCCchhhhhhcCCCCCEE--eeehhhcC-C-CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            99996532 1     111122336766  58999984 3 4688899998888776543221222346777777666666


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------HHHHHHH
Q 009523          396 TLH--LRVQQQNSTALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------LTATIKF  463 (532)
Q Consensus       396 tl~--~r~~~~~~~a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------~~~~~~~  463 (532)
                      .+.  ..+++..+..+++.+.|++.    |.+..                  .+|.|.++.+++...      .+....+
T Consensus       313 ~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G~~~~i~~~~~~~~~~~~~~~~~l  374 (421)
T PRK06777        313 VIAEEKLCQRALILGAHLVEVLEKAKASCPAIVD------------------IRARGSMVAVEFNDPQTGKPSPEFTRQY  374 (421)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE------------------ecCceEEEEEEEecCccCCccHHHHHHH
Confidence            543  22334445555566655542    22222                  245788888887531      1234555


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                      ...+...++.+..++.                         ..+.|||...+    ++.++.++.|+++|.
T Consensus       375 ~~~~~~~Gv~i~~~~~-------------------------~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        375 QRQALEEGLLLLSCGV-------------------------HGNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             HHHHHhCCeEEeecCC-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            5555445555544321                         13578998864    445555666666553

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.58  E-value=5.1e-13  Score=143.11  Aligned_cols=288  Identities=13%  Similarity=0.112  Sum_probs=174.4

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh------c-ccC
Q 009523          197 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV------L-PKM  264 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~------l-~~~  264 (532)
                      .+.++...+|.++|+++.+.   +.+++++||++|+..+++...  ....+|+.....|++.......+      . ..+
T Consensus        79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~  158 (425)
T PRK07495         79 VVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF  158 (425)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence            56788888899999998753   468888999999999987442  23457888888888843111010      0 001


Q ss_pred             C---cEEEEeCCC----------CHHHHHHhhc----CCCeeEEEEeCCCCCCCccc-C---HHHHHHHHHhCCCEEEEE
Q 009523          265 G---ITATVIDPA----------DMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCID  323 (532)
Q Consensus       265 G---v~v~~vd~~----------dle~Le~al~----~~~tklV~lesP~NptG~v~-d---l~~I~~la~~~gi~lIvD  323 (532)
                      +   ..+..++..          +++++++.++    ..++++|++|.....+|.+. |   +++|.++|++||+++|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D  238 (425)
T PRK07495        159 GAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD  238 (425)
T ss_pred             CCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            1   122333322          1455677653    23699999998876677554 3   789999999999999999


Q ss_pred             CCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH
Q 009523          324 GTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL  397 (532)
Q Consensus       324 et~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl  397 (532)
                      |++... .     .........|+  .+++|.++++  ...|++++++++++.+...........+|..+..++..++.+
T Consensus       239 Ev~tG~gr~G~~~a~~~~gv~pDi--~tlsK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l  314 (425)
T PRK07495        239 EVQTGFARTGKLFAMEHHEVAADL--TTMAKGLAGG--FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVI  314 (425)
T ss_pred             chhhcCCcCCCceeecccCCCCCE--EeehhhhcCC--ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHH
Confidence            996432 1     11222223455  5589999864  467889999888877653222222234677777666666655


Q ss_pred             HH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------HHHHHHHHH
Q 009523          398 HL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------LTATIKFID  465 (532)
Q Consensus       398 ~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------~~~~~~~l~  465 (532)
                      ..  ..++..+..+++.+.|++    +|.+..                  .+|.|.++++++..+      ......+..
T Consensus       315 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~  376 (425)
T PRK07495        315 EEEDLCERANQLGNRLKQRLASLRETVPEIAD------------------IRGPGFMNAVEFNDADSGLPSAEFANRVRL  376 (425)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHhhCCCeee------------------eecCceEEEEEEecCCCCCccHHHHHHHHH
Confidence            32  223333444445555543    222222                  245688999999542      122345555


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~dL~~AL~~  531 (532)
                      .+...++-+...                         |...+.|||.    +..++.++.++.|+++|++
T Consensus       377 ~~~~~Gvl~~~~-------------------------g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~  421 (425)
T PRK07495        377 KALEKGLILLTC-------------------------GVHGNVIRFLAPITIQDDVFAEALDILEASILE  421 (425)
T ss_pred             HHHHCCeEEeec-------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            554444332210                         1113567777    4446778888888888864

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.58  E-value=4.4e-14  Score=148.07  Aligned_cols=238  Identities=21%  Similarity=0.237  Sum_probs=144.7

Q ss_pred             HHHHHhhhCCC----cE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHh-c-----ccCCcEEEE--eCC
Q 009523          207 EEKMSALEGAE----ST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-L-----PKMGITATV--IDP  273 (532)
Q Consensus       207 e~~lA~l~ga~----~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~-l-----~~~Gv~v~~--vd~  273 (532)
                      ++++.++++++    .+ +-.-||+.|+.+++.+|++|||+|+..+..+++....-... .     .....++..  +|.
T Consensus        72 ~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~  151 (399)
T PF00464_consen   72 IERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDP  151 (399)
T ss_dssp             HHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-T
T ss_pred             HHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeec
Confidence            46777889987    54 55689999999999999999999999998887743110000 0     001123323  232


Q ss_pred             ----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCC-----CCCcccccccCCcEEEE
Q 009523          274 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLNQKALSLGADLVLH  344 (532)
Q Consensus       274 ----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a-----~~~~~~~l~~gaDivv~  344 (532)
                          .|.+++++.+++.++|+|++-.-+  .....|++++.++|++.|++|++|.++.     .+...+|++. +|+++.
T Consensus       152 ~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt~  228 (399)
T PF00464_consen  152 DTGLIDYDELEKLAKEHKPKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVTG  228 (399)
T ss_dssp             TTSSB-HHHHHHHHHHH--SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEEE
T ss_pred             CCCeECHHHHHHHHhhcCCCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEEEe
Confidence                289999999887789999984333  4567899999999999999999999943     3556788887 999999


Q ss_pred             CCccccCCCCCcEEEEEEeC--------------hHHHHHHHHHhh--hcCCC-ccHHHHHHHHHhHH----HHHHHHHH
Q 009523          345 SATKFIGGHNDVLAGSISGS--------------GKLVTQIRNLHH--VLGGA-LNPNAAYLIIRGMK----TLHLRVQQ  403 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~--------------~~li~~l~~~~~--~~G~~-~~~~~a~l~l~~l~----tl~~r~~~  403 (532)
                      |.||.|.|+.   +|+++.+              +++.+++.+...  ..|+. ++..+ .++..-.+    ......++
T Consensus       229 sThKtl~GPr---ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~ia-alAval~ea~~~~fk~Ya~q  304 (399)
T PF00464_consen  229 STHKTLRGPR---GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIA-ALAVALKEALSPEFKEYAKQ  304 (399)
T ss_dssp             ESSGGG-SSS----EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHH-HHHHHHHHHTSHHHHHHHHH
T ss_pred             eccccccccC---ceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHH-HHHHHHhcccCHHHHHHHHH
Confidence            9999999985   8999998              678888876432  12221 22222 22211111    24566778


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcC
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALK  468 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L~  468 (532)
                      ..+|++.|++.|.+.. + +|..-+..               ..++++.+..   +...+.+++++..
T Consensus       305 Vv~NAk~La~~L~~~G-~-~v~~ggTd---------------~H~vlvd~~~~~~~g~~a~~~Le~~g  355 (399)
T PF00464_consen  305 VVKNAKALAEALQERG-F-KVVTGGTD---------------NHQVLVDLRSFGIDGKEAEKALEEAG  355 (399)
T ss_dssp             HHHHHHHHHHHHHHTT---EEGGGS-S---------------SSEEEEEGGGGTS-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhCC-c-EEEECCCC---------------CCeEEEEecccccchHHHHHHHHhcC
Confidence            8899999999999863 3 33332322               2378888753   2345666666654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.58  E-value=6.4e-13  Score=143.10  Aligned_cols=288  Identities=12%  Similarity=0.145  Sum_probs=174.3

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHH-H--------H
Q 009523          198 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-I--------E  258 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~-~--------~  258 (532)
                      +.++...+|.++|+++..  .+.+.+++||++|+..+++....       + ..+||.....|++.... +        .
T Consensus        89 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~  168 (445)
T PRK09221         89 MGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNR  168 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhh
Confidence            567888889999999874  36788999999999999874321       1 24788888888874211 1        0


Q ss_pred             HhcccCCcEEEEeCCC------------------CHHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHHHHHH
Q 009523          259 TVLPKMGITATVIDPA------------------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~~------------------dle~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I~~la  313 (532)
                      .........+..++..                  ..+++++.++.   .++.+|++|......|.+.|    +++|.++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc  248 (445)
T PRK09221        169 KMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREIC  248 (445)
T ss_pred             hccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence            0001111112222211                  13567777642   36899999999988899888    99999999


Q ss_pred             HhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-------hhhcCC
Q 009523          314 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG  380 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~~~~G~  380 (532)
                      +++|+++|+||++...      +..+....-.|+++  ++|.++++. ...|.+++++++++.+...       ......
T Consensus       249 ~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  325 (445)
T PRK09221        249 DKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT--FAKGLTNGA-IPMGAVIASDEIYDAFMQGPEYAIEFFHGYTY  325 (445)
T ss_pred             HHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE--eccccccCc-ccceeeEEcHHHHHhhccCcccccccccccCC
Confidence            9999999999996321      11222233458776  889998642 2356678888887766421       111112


Q ss_pred             CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--
Q 009523          381 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--  456 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--  456 (532)
                      ..+|..+..++..++.+..  .+++..+..+++.+.|++..+     +|.+          ...+|.|.++.+++...  
T Consensus       326 ~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~v----------~~vrg~Gl~~~v~~~~~~~  390 (445)
T PRK09221        326 SAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKG-----LPHV----------IDIRNIGLVAGIELAPRPG  390 (445)
T ss_pred             CcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcc-----CCCE----------EEEecCceEEEEEEecccc
Confidence            2467777666666665532  234444555555565554311     2211          12356788888888531  


Q ss_pred             --HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          457 --LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       457 --~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                        ......+.+.+...++-+..+                            .+.|||+..+    ++++.+++.|+++|.
T Consensus       391 ~~~~~~~~~~~~~~~~Gv~~~~~----------------------------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~  442 (445)
T PRK09221        391 APGARGYEAFMKCFEKGLLVRYT----------------------------GDTIALSPPLIIEKAQIDELVDALGDALR  442 (445)
T ss_pred             cccchHHHHHHHHHHCCeEEeec----------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence              112344555554444333211                            2468888554    556667777777765


Q ss_pred             h
Q 009523          531 A  531 (532)
Q Consensus       531 ~  531 (532)
                      +
T Consensus       443 ~  443 (445)
T PRK09221        443 A  443 (445)
T ss_pred             h
Confidence            4

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.58  E-value=1.1e-12  Score=140.02  Aligned_cols=285  Identities=13%  Similarity=0.054  Sum_probs=167.7

Q ss_pred             CCchhHHHHHHHHHhhh--C--CC-cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh------ccc
Q 009523          198 YGNPTTVVVEEKMSALE--G--AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV------LPK  263 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~--g--a~-~~i~~-sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~------l~~  263 (532)
                      +.++...+|.++|+++.  +  .. .++++ +||++|+..+++...  ....+||.-...|+|........      -..
T Consensus        75 ~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~  154 (412)
T TIGR02407        75 MATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQG  154 (412)
T ss_pred             cCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccC
Confidence            35677788888998874  2  22 35554 799999999988542  23367888888888853221111      011


Q ss_pred             CC---cEEEEeCC--------CCHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEE
Q 009523          264 MG---ITATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCID  323 (532)
Q Consensus       264 ~G---v~v~~vd~--------~dle~Le~al~~-----~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvD  323 (532)
                      ++   ..+..++.        ++++.+++.+.+     .++.+|++|...++.|.+.+    +++|.++|++||+++|+|
T Consensus       155 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D  234 (412)
T TIGR02407       155 AGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVD  234 (412)
T ss_pred             CCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            11   12333443        246778888852     25799999999999888543    789999999999999999


Q ss_pred             CCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-
Q 009523          324 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-  396 (532)
Q Consensus       324 et~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-  396 (532)
                      |++...      +.........|+++  ++|.+++.| ...|++++++++ +.+...........++..+..+...++. 
T Consensus       235 EV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G-~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~  310 (412)
T TIGR02407       235 DIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYG-LPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYY  310 (412)
T ss_pred             chhhCCCccchhHHhcccCCCCCEEE--echhccCCc-cceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHH
Confidence            997521      12233445678876  679999744 467888887765 4332111111112345555444445543 


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC
Q 009523          397 LHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP  470 (532)
Q Consensus       397 l~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~  470 (532)
                      +..  ..++..+..+++.+.|+.    ++.+. .                ..+|.|.+++++++.. .....+...+...
T Consensus       311 i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~----------------~vrg~Gl~~~l~l~~~-~~~~~~~~~~~~~  372 (412)
T TIGR02407       311 WSDDAFEKAVQRKSEIIQERLDRIVAEYPELI-K----------------QVRGRGLMQGIECGDG-DLAGKIAKAAFEN  372 (412)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHhhCCCce-E----------------eeecceeEEEEEecCh-HHHHHHHHHHHHC
Confidence            211  122222333444444432    22110 0                1245788999999753 4456677766655


Q ss_pred             ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHH----HHHHHHHHHH
Q 009523          471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE----DLKADVLQAL  529 (532)
Q Consensus       471 ~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~----dli~dL~~AL  529 (532)
                      ++.+...                         +..++.|||+..+-.++    .+++.|+++|
T Consensus       373 Gv~v~~~-------------------------~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l  410 (412)
T TIGR02407       373 GLIIETS-------------------------GPNDEVIKLLPPLTIDEETLQQGLDILEQAV  410 (412)
T ss_pred             CCEEecc-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            5444321                         11246799988874444    4444555544

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.57  E-value=4.5e-13  Score=139.58  Aligned_cols=222  Identities=20%  Similarity=0.266  Sum_probs=151.4

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhc------
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL------  261 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l------  261 (532)
                      .+..|+. ++..--++.+.|.++.+. +.+-+++||++|...+++..  ....|+|+....+|++....+-.-.      
T Consensus        84 ~G~~fg~-Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t  162 (432)
T COG0001          84 RGLSFGA-PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAAT  162 (432)
T ss_pred             hcCCCCC-CCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCccc
Confidence            4566665 333344566888888876 88999999999999988743  2345899999999999654432111      


Q ss_pred             ----ccCCc------EEEEeCCCCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECC
Q 009523          262 ----PKMGI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGT  325 (532)
Q Consensus       262 ----~~~Gv------~v~~vd~~dle~Le~al~~~--~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet  325 (532)
                          ...|+      .+..++-+|++.+++++++.  ++.+|++|..-...|.+.|    ++.|.++|+++|+++|.||+
T Consensus       163 ~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV  242 (432)
T COG0001         163 LGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV  242 (432)
T ss_pred             CCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence                11122      23445678999999999764  7999999988766788777    78999999999999999999


Q ss_pred             CCCC-----CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhc-CCCc--cHHHHHHHHHhHHHH
Q 009523          326 FATP-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-GGAL--NPNAAYLIIRGMKTL  397 (532)
Q Consensus       326 ~a~~-----~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~-G~~~--~~~~a~l~l~~l~tl  397 (532)
                      ...+     -.+.....-+|+.+  +.|.+||+  ...|++.++.++++.+......+ ++++  +|....+....++.+
T Consensus       243 iTGFR~~~gGaq~~~gi~PDltt--lGKiIGGG--lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l  318 (432)
T COG0001         243 ITGFRVALGGAQGYYGVEPDLTT--LGKIIGGG--LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL  318 (432)
T ss_pred             hhhcccCCcccccccCcCcchhh--hhhhhcCC--cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHH
Confidence            4321     12344445567777  89999976  47899999999998776543222 2222  455444444444444


Q ss_pred             HH---HHHHHHHHHHHHHHHHHh
Q 009523          398 HL---RVQQQNSTALRMAKILEA  417 (532)
Q Consensus       398 ~~---r~~~~~~~a~~la~~L~~  417 (532)
                      ..   -.++..+..++|.+.|++
T Consensus       319 ~~~~~~y~~l~~~~~~L~~gl~~  341 (432)
T COG0001         319 MTEEGVYERLDALGERLAEGLRA  341 (432)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHH
Confidence            33   345555666777766654

>PRK05965 hypothetical protein; Provisional

Probab=99.57  E-value=1.3e-12  Score=141.23  Aligned_cols=289  Identities=16%  Similarity=0.169  Sum_probs=175.6

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHHHHHh------c
Q 009523          198 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETV------L  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~~~~~------l  261 (532)
                      +.++...+|.++|+++..  .+.+++++||++|+..+++....       + ..+||.....|++....-...      -
T Consensus        87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~  166 (459)
T PRK05965         87 FGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFH  166 (459)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhh
Confidence            457777889999999874  35677889999999999975321       2 257898899998853211000      0


Q ss_pred             ccCCc---EEEEeCC---------CC--------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          262 PKMGI---TATVIDP---------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       262 ~~~Gv---~v~~vd~---------~d--------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                      ..++.   .+..++.         .|        ++++++.+..   +++.+|++|......|.+.+    +++|.++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~  246 (459)
T PRK05965        167 RGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR  246 (459)
T ss_pred             cccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHH
Confidence            01111   1122221         23        2567777752   36899999998877787765    789999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-----hhcCC--C
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGG--A  381 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-----~~~G~--~  381 (532)
                      +||+++|.||++...      +.......-.||++  +.|.++|+- +..|.+++++++.+.+....     ..++.  .
T Consensus       247 ~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~  323 (459)
T PRK05965        247 ELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTSGY-VPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYS  323 (459)
T ss_pred             HcCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhccCC-cceeEEEEcHHHHHHHhccccccccccccCCCC
Confidence            999999999995432      22333444579998  789998752 24677788888887664210     01222  2


Q ss_pred             ccHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--
Q 009523          382 LNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--  457 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r--~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--  457 (532)
                      .+|..+..++..++.+...  +++..+...++.+.|++.   .  .+|.+          ...+|.|.|+.+++..+.  
T Consensus       324 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l---~--~~~~v----------~~vrG~Gl~~gie~~~~~~~  388 (459)
T PRK05965        324 AHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDAL---R--AHPLV----------GDVRGRGLLGALELVADKAT  388 (459)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh---c--cCCCE----------EEEeecceEEEEEEeccccc
Confidence            4677777777777665421  222333334444444431   1  12211          123678999999985321  


Q ss_pred             --------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHH
Q 009523          458 --------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKADV  525 (532)
Q Consensus       458 --------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~dL  525 (532)
                              ....++...+...++-+..                           ..++.||+.    +..++.+++++.|
T Consensus       389 ~~~~~~~~~~~~~i~~~~~~~Gll~~~---------------------------~g~~~i~~~PpL~it~~ei~~~~~~l  441 (459)
T PRK05965        389 KTPFDAALDPADRIFDRAYANGLVFRA---------------------------FGDGVLGFAPALCCTEGEFDLIFERT  441 (459)
T ss_pred             cCCCCchhHHHHHHHHHHHhCCeEEEe---------------------------cCCcEEEEECCCcCCHHHHHHHHHHH
Confidence                    1234555555444432211                           013567877    5557777888888


Q ss_pred             HHHHhh
Q 009523          526 LQALHA  531 (532)
Q Consensus       526 ~~AL~~  531 (532)
                      +++|+.
T Consensus       442 ~~~l~~  447 (459)
T PRK05965        442 RKTLDD  447 (459)
T ss_pred             HHHHHH
Confidence            888764

>PRK12403 putative aminotransferase; Provisional

Probab=99.57  E-value=1.8e-12  Score=140.24  Aligned_cols=235  Identities=18%  Similarity=0.225  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cCCCE-EEEcCCCCcch-HHHHHHh-c---cc
Q 009523          199 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAGGH-IVTTTDCYRKT-RIFIETV-L---PK  263 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all-------~~Gd~-VIv~~~~y~~t-~~~~~~~-l---~~  263 (532)
                      .++...+|.++|+++.+.  +.+++++||++|+..+++...       ++++. |+.....|++. ...+... .   ..
T Consensus        96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~  175 (460)
T PRK12403         96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE  175 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence            567788999999999863  678999999999999998653       23334 45556667764 2211100 0   00


Q ss_pred             CC---cEEEEeCCC-------C----------HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhC
Q 009523          264 MG---ITATVIDPA-------D----------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  316 (532)
Q Consensus       264 ~G---v~v~~vd~~-------d----------le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la~~~  316 (532)
                      .+   -.+..++..       +          ++++++.+.   ..++.+|++|......|.+.+    +++|.++|++|
T Consensus       176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~  255 (460)
T PRK12403        176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY  255 (460)
T ss_pred             cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence            00   012222211       1          245655552   136889999999888888887    99999999999


Q ss_pred             CCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCC--ccHHH
Q 009523          317 GAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGA--LNPNA  386 (532)
Q Consensus       317 gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~--~~~~~  386 (532)
                      |+++|+||++...      +.......-.||++  ++|.++++- ...|.+++++++.+.+.....  .++.+  .+|..
T Consensus       256 g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~-~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~  332 (460)
T PRK12403        256 DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGY-VPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVA  332 (460)
T ss_pred             CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccccc-cceEEEEECHHHHHHHhcCCCccccCCCCCCCHHH
Confidence            9999999996321      11233334468887  899999752 134555678888777643111  12323  56888


Q ss_pred             HHHHHHhHHHHHH--HHHHHH-HHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          387 AYLIIRGMKTLHL--RVQQQN-STALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       387 a~l~l~~l~tl~~--r~~~~~-~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      +..++..++.+..  .+++.. ++.+++.+.|++    +|.+..                  .+|.|.|+.+++.
T Consensus       333 ~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrG~Gl~~gie~~  389 (460)
T PRK12403        333 AAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGE------------------VQGAGLVAALQFA  389 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe------------------EeecceEEEEEEc
Confidence            8777777776643  223332 445555555543    332222                  2567889999995

>PRK06105 aminotransferase; Provisional

Probab=99.57  E-value=1.3e-12  Score=141.20  Aligned_cols=242  Identities=14%  Similarity=0.166  Sum_probs=153.1

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc------c-CC-CEEEEcCCCCcchHHHHHHh----
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV------P-AG-GHIVTTTDCYRKTRIFIETV----  260 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all------~-~G-d~VIv~~~~y~~t~~~~~~~----  260 (532)
                      ++++.++...+|.++|+++.+.  +.+++++||++|+.++++...      . +| .+||.....|++.......+    
T Consensus        86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~  165 (460)
T PRK06105         86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLP  165 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCc
Confidence            4456788888999999998754  568888999999999998642      1 23 47888888888743111000    


Q ss_pred             --cccCCc---EEEEeCCC------------------CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHH
Q 009523          261 --LPKMGI---TATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVS  310 (532)
Q Consensus       261 --l~~~Gv---~v~~vd~~------------------dle~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~  310 (532)
                        .+.++.   .+..++..                  ..+++++++.   ..++.+|++|......|.+.+    +++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr  245 (460)
T PRK06105        166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQ  245 (460)
T ss_pred             ccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence              001111   12222211                  1356777663   236899999999887888877    89999


Q ss_pred             HHHHhCCCEEEEECCCCC-C-----CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-------hh
Q 009523          311 DLCHKKGAIVCIDGTFAT-P-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HV  377 (532)
Q Consensus       311 ~la~~~gi~lIvDet~a~-~-----~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~  377 (532)
                      ++|++||+++|+||++.. +     +.......-.||++  ++|.++++. ...|++++++++.+.+....       ..
T Consensus       246 ~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG~-~P~~av~~~~~i~~~~~~~~~~~~~~~h~  322 (460)
T PRK06105        246 AVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSSY-QPLSAVLMNEKVYDPIADESGKIGTFGHG  322 (460)
T ss_pred             HHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccCc-ccceEEEEcHHHHHHHhcccccCcccccC
Confidence            999999999999999632 1     11233344578886  899998752 34778888888887765321       11


Q ss_pred             cCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          378 LGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       378 ~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      .....+|..+..++..++.+..  .+++..+..+++.+.|++.   .+  +|.+          .+.+|.|.|+.|++.
T Consensus       323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l---~~--~~~v----------~~vrG~Gl~~gie~~  386 (460)
T PRK06105        323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL---AD--HPLV----------GEVRGVGLIAAVELV  386 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh---hc--CCCe----------EEEEecceEEEEEEe
Confidence            1123567777777777776643  2334444445555555432   01  1211          123678899999985

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.56  E-value=1.9e-12  Score=139.41  Aligned_cols=288  Identities=11%  Similarity=0.138  Sum_probs=171.7

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHH-HH--------H
Q 009523          198 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRI-FI--------E  258 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~-~~--------~  258 (532)
                      +.+|...+|.++|+++..  .+.+.+++||++|+..+++....       + ..+||+....|++... .+        .
T Consensus        86 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~  165 (442)
T PRK13360         86 MGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNR  165 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhh
Confidence            457888889999999874  36788999999999999874321       2 2579999988888421 11        0


Q ss_pred             HhcccCCcEEEEeCCC------------------CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHH
Q 009523          259 TVLPKMGITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~~------------------dle~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la  313 (532)
                      .........+.+++..                  .+++|+++++   ..++.+|++|......|.+.|    +++|.++|
T Consensus       166 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc  245 (442)
T PRK13360        166 KAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREIC  245 (442)
T ss_pred             hccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            0001001112222211                  1457777774   236899999999988899988    99999999


Q ss_pred             HhCCCEEEEECCCCC-C-----CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-------hhhcCC
Q 009523          314 HKKGAIVCIDGTFAT-P-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG  380 (532)
Q Consensus       314 ~~~gi~lIvDet~a~-~-----~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~~~~G~  380 (532)
                      ++||+++|+||++.. +     +.........|+++  ++|.++++. ...|.+++++++.+.+...       ......
T Consensus       246 ~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt--~gK~l~gG~-~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~  322 (442)
T PRK13360        246 DKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLT--CAKGLTNGA-IPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTY  322 (442)
T ss_pred             HHcCCEEEEechhhCCCCCccchhhhhcCCCCceee--eeeccccCc-cceEEEEEcHHHHHHhhcCCccccccccCCCC
Confidence            999999999999632 1     11222334468775  899998642 2345577788887766421       111112


Q ss_pred             CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--
Q 009523          381 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--  456 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--  456 (532)
                      ..+|..+..++..++.+..  ..++..+..+++.+.|++...     +|.+          ...+|.|.++.+++...  
T Consensus       323 ~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~v----------~~vrG~Gl~~~~~l~~~~~  387 (442)
T PRK13360        323 SGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRD-----APHV----------IDIRNLGLVGAVELAPRDG  387 (442)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCCe----------eeeeccceEEEEEEecCCC
Confidence            2467777776666766532  223333444555555543211     1211          11245677777777421  


Q ss_pred             --HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          457 --LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       457 --~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                        ...+..+.+.+...|+-+..                            ..+.|||+..+    ++++.+++.|+++|+
T Consensus       388 ~~~~~~~~~~~~l~~~Gvl~~~----------------------------~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~  439 (442)
T PRK13360        388 KPGKRAYEVFLKCFEKGLMIRY----------------------------TGDILALSPPLIIEEAQIDELFDILAQALK  439 (442)
T ss_pred             CcchhHHHHHHHHHHCCcEEEe----------------------------cCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence              12344555555433433221                            12468888554    556666667766665


Q ss_pred             h
Q 009523          531 A  531 (532)
Q Consensus       531 ~  531 (532)
                      +
T Consensus       440 ~  440 (442)
T PRK13360        440 E  440 (442)
T ss_pred             H
Confidence            4

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.56  E-value=1.2e-12  Score=140.22  Aligned_cols=288  Identities=15%  Similarity=0.107  Sum_probs=168.6

Q ss_pred             CCchhHHHHHHHHHhhhC----CC-cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHH-HHHHh-----ccc
Q 009523          198 YGNPTTVVVEEKMSALEG----AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETV-----LPK  263 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g----a~-~~i~~-sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~-~~~~~-----l~~  263 (532)
                      +.++...+|.++|+++..    .+ .+.++ +||++|+..+++...  ....+||.....|+|... .+...     -..
T Consensus        79 ~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~  158 (425)
T PRK09264         79 MHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQG  158 (425)
T ss_pred             cCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccC
Confidence            456777888889988642    23 34454 699999999987542  233578888888888432 11110     011


Q ss_pred             CCc---EEEEeCC--------CCHHHHHHhhcC-----CCeeEEEEeCCCCCCCccc----CHHHHHHHHHhCCCEEEEE
Q 009523          264 MGI---TATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCID  323 (532)
Q Consensus       264 ~Gv---~v~~vd~--------~dle~Le~al~~-----~~tklV~lesP~NptG~v~----dl~~I~~la~~~gi~lIvD  323 (532)
                      ++.   .+..++.        .|++++++.+++     .++.+|++|...+..|.+.    .+++|.++|++||+++|+|
T Consensus       159 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D  238 (425)
T PRK09264        159 AGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVD  238 (425)
T ss_pred             CCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe
Confidence            111   2334443        367888888853     2478999999988777655    3889999999999999999


Q ss_pred             CCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhHH
Q 009523          324 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMK  395 (532)
Q Consensus       324 et~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~a~l~l~~l~  395 (532)
                      |++...      +.........|+++  ++|.+++.| ...|++++++++ ..+...  ..+.+  .+|..+..++..++
T Consensus       239 EV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l~~~G-~pigav~~~~~i-~~~~~~--~~~~T~~gnp~~~aaa~a~l~  312 (425)
T PRK09264        239 DIQAGCGRTGTFFSFERAGITPDIVT--LSKSISGYG-LPMALVLIKPEL-DVWKPG--EHNGTFRGNNLAFVTATAALE  312 (425)
T ss_pred             chhhCCccccHHHHHhhcCCCCCEEE--eccccCCCc-cceEEEEEchhh-hccCCC--ccCCCCCCCHHHHHHHHHHHH
Confidence            997431      12233344568775  679998755 456778887765 333211  11211  24555444444442


Q ss_pred             HH-H--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          396 TL-H--LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       396 tl-~--~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                      .+ .  ...++..++.+++.+.|++...    .+|.+.         ...+|.|.+++++++. ......+...+...++
T Consensus       313 ~~~~~~~l~~~~~~~g~~l~~~l~~l~~----~~~~~~---------~~vrg~Gl~~~i~l~~-~~~~~~l~~~~~~~Gv  378 (425)
T PRK09264        313 EYWSDDAFEKEVKAKGELVRERLEEIAA----KYPGLG---------AEVRGRGMMQGIDFGD-GELAGKIAAEAFENGL  378 (425)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHH----hCCCce---------ecceecccEEEEEecC-hHHHHHHHHHHHHCCC
Confidence            21 1  1223333445555555543210    112110         1124568899999964 3445566666654454


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHh
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALH  530 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~  530 (532)
                      .+...                         +...+.|||+..    .++.++.++.|.++|+
T Consensus       379 ~~~~~-------------------------~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~  415 (425)
T PRK09264        379 IIETS-------------------------GPEDEVVKLLPPLTIDEEELEEGLDILEEAVA  415 (425)
T ss_pred             EEecc-------------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            33221                         112367888866    4556666777777665

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.56  E-value=2.5e-12  Score=140.23  Aligned_cols=288  Identities=14%  Similarity=0.123  Sum_probs=173.7

Q ss_pred             CCchhHHHHHHHHHhhhC-C--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCCcchHH-HHHHh-c---
Q 009523          198 YGNPTTVVVEEKMSALEG-A--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTRI-FIETV-L---  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g-a--~~~i~~sSG~~Ai~~al~all-------~~G-d~VIv~~~~y~~t~~-~~~~~-l---  261 (532)
                      ..++...+|.++|.+++. .  +.+++++||++|+..+++...       ++| .+||..+..|++... .+... .   
T Consensus       130 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~  209 (504)
T PLN02760        130 RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPAL  209 (504)
T ss_pred             cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhh
Confidence            356777889999988853 3  357889999999999998653       123 578888888888531 11100 0   


Q ss_pred             -ccCCc---EEEEeCCC----------C--------HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHH
Q 009523          262 -PKMGI---TATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  312 (532)
Q Consensus       262 -~~~Gv---~v~~vd~~----------d--------le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~l  312 (532)
                       ..++.   .+..++..          +        .++|++++.   +.++.+|++|......|.+.|    +++|.++
T Consensus       210 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~l  289 (504)
T PLN02760        210 HQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAV  289 (504)
T ss_pred             ccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence             01111   02222210          1        245666663   235889999999888898888    9999999


Q ss_pred             HHhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-----hhcCC-
Q 009523          313 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGG-  380 (532)
Q Consensus       313 a~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-----~~~G~-  380 (532)
                      |++||+++|+||++...      +.+.....-+|+++  ++|.++++. ...|.+++++++.+.+....     ...+. 
T Consensus       290 c~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG~-~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T  366 (504)
T PLN02760        290 LKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSAY-MPIGAVLVSPEISDVIHSQSNKLGSFAHGFT  366 (504)
T ss_pred             HHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCCc-cccceEeecHHHHhhhhcccccccCcccCCC
Confidence            99999999999996321      11222334478776  899998642 23566788888888775310     01122 


Q ss_pred             -CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH
Q 009523          381 -ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL  457 (532)
Q Consensus       381 -~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~  457 (532)
                       ..+|..+..++..++.+..  .+++..+..+++.+.|++.   .+  +|.+          ...+|.|.|+.+++..+.
T Consensus       367 ~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l---~~--~~~v----------~~vrG~Gl~~gie~~~~~  431 (504)
T PLN02760        367 YSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF---SG--SPII----------GEIRGTGLILGTEFVDNK  431 (504)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH---hc--CCCe----------eeEEeCceEEEEEEecCC
Confidence             2367877777777776543  2334444455555555442   11  1211          123678899999985321


Q ss_pred             ----------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHH
Q 009523          458 ----------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKA  523 (532)
Q Consensus       458 ----------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~  523 (532)
                                .....+.+.+...|+-+..                            ..+.|||+..    .++++.+++
T Consensus       432 ~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----------------------------~g~~lrl~Ppl~it~eeid~~~~  483 (504)
T PLN02760        432 SPNDPFPAEWGVGAYFGAECKKRGMLVRV----------------------------AGDNIMMSPPLIITPEEVDELIS  483 (504)
T ss_pred             cccccccchhHHHHHHHHHHHhCCcEEEe----------------------------cCCEEEEECCCCCCHHHHHHHHH
Confidence                      1234455555444432211                            0235788744    466777777


Q ss_pred             HHHHHHhh
Q 009523          524 DVLQALHA  531 (532)
Q Consensus       524 dL~~AL~~  531 (532)
                      .|+++|..
T Consensus       484 ~l~~al~~  491 (504)
T PLN02760        484 IYGKALKA  491 (504)
T ss_pred             HHHHHHHH
Confidence            77777753

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.56  E-value=1e-12  Score=139.34  Aligned_cols=212  Identities=19%  Similarity=0.220  Sum_probs=144.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe-------
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-------  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v-------  271 (532)
                      ++|+..+||+.+++++|.+.++.++||+.|+.+++...+++||.|  +...|..+...   .....|....-+       
T Consensus        76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~a---hI~~~Ga~fvDi~~d~a~~  150 (460)
T PRK13237         76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRY---HQELNGGIFVDIIIDEAHD  150 (460)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHH---HHHhCCcEEEeeecccccc
Confidence            688999999999999999999999999999998766668999965  55555544322   112234322211       


Q ss_pred             -------C-CCCHHHHHHhhcCC---CeeEEEEeCCCCCC-Cccc---CHHHHHHHHHhCCCEEEEECCCCCC-------
Q 009523          272 -------D-PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFATP-------  329 (532)
Q Consensus       272 -------d-~~dle~Le~al~~~---~tklV~lesP~Npt-G~v~---dl~~I~~la~~~gi~lIvDet~a~~-------  329 (532)
                             + ..|+++|+++|++.   ++++|.++.++|.. |...   ++++|.++|++||++||.|.+....       
T Consensus       151 ~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~  230 (460)
T PRK13237        151 AQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKE  230 (460)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcc
Confidence                   1 12899999999752   35578888888887 5665   6799999999999999999994322       


Q ss_pred             ----Cccccc-------ccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhc-C----CCccHHHHHHHHH
Q 009523          330 ----LNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL-G----GALNPNAAYLIIR  392 (532)
Q Consensus       330 ----~~~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~-G----~~~~~~~a~l~l~  392 (532)
                          +..++.       ...+|.++.|++|.++.+   .||+++.+ +++.++++.....+ |    +.++.-....+..
T Consensus       231 re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAv  307 (460)
T PRK13237        231 REEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAI  307 (460)
T ss_pred             cccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHh
Confidence                211221       124799999999999876   37877765 57888888764333 2    1222212112222


Q ss_pred             hHH-HHH-HHHHHHHHHHHHHHHHHHhC
Q 009523          393 GMK-TLH-LRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       393 ~l~-tl~-~r~~~~~~~a~~la~~L~~~  418 (532)
                      +++ ... ..+++..+++++|++.|.+.
T Consensus       308 gl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        308 GIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence            333 222 34455667889999999875

>PRK07046 aminotransferase; Validated

Probab=99.56  E-value=4.8e-12  Score=136.51  Aligned_cols=215  Identities=19%  Similarity=0.203  Sum_probs=145.7

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHH-HHHhc-----c---cCCc
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IETVL-----P---KMGI  266 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~-~~~~l-----~---~~Gv  266 (532)
                      ..++...+|.++|.++.+.+.+.+++||++|+..+++...  ...++|+.....|+|.... +....     .   ..|+
T Consensus       112 ~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~  191 (453)
T PRK07046        112 LPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQ  191 (453)
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCC
Confidence            4677778899999998887889999999999999987542  2346788888889885321 11100     0   0121


Q ss_pred             ------EEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCC----CCCcc
Q 009523          267 ------TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFA----TPLNQ  332 (532)
Q Consensus       267 ------~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a----~~~~~  332 (532)
                            .+..++.+|++++++.+...++.+|++|......|.+.|    ++++.++|+++|+++|+||++.    .+-.+
T Consensus       192 ~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~  271 (453)
T PRK07046        192 VHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT  271 (453)
T ss_pred             CccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh
Confidence                  234456679999999996557999999998877777766    7899999999999999999963    22112


Q ss_pred             cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-------hhcCCC--ccHHHHHHHHHhHHHHHH--HH
Q 009523          333 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGA--LNPNAAYLIIRGMKTLHL--RV  401 (532)
Q Consensus       333 ~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~~G~~--~~~~~a~l~l~~l~tl~~--r~  401 (532)
                      .....-.|+++  +.|.++|+  ...|++++++++.+.+....       ..++++  .+|..+.+++..++.+..  ..
T Consensus       272 ~~~gv~PDi~t--~gK~lggG--~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~  347 (453)
T PRK07046        272 RAHGLEPDFLV--VGKPIAGG--VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAY  347 (453)
T ss_pred             HHhCCCcccee--ehhhhcCC--CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHH
Confidence            22344578887  89999975  45788899999888775311       012222  367777666666665422  23


Q ss_pred             HHHHHHHHHHHHHHH
Q 009523          402 QQQNSTALRMAKILE  416 (532)
Q Consensus       402 ~~~~~~a~~la~~L~  416 (532)
                      ++..+..+++.+.|+
T Consensus       348 ~~~~~~g~~l~~~L~  362 (453)
T PRK07046        348 AHMLALAARLAAGLR  362 (453)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344455555554

>PRK15029 arginine decarboxylase; Provisional

Probab=99.56  E-value=2.3e-13  Score=152.77  Aligned_cols=177  Identities=15%  Similarity=0.139  Sum_probs=135.8

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+.....+.++..|+++|++++.+..+|+ .+|.+++++++++||+|++++++|.+.+.    .+...|+..+++.+.  
T Consensus       202 ~p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~----al~L~ga~Pvyl~P~~~  277 (755)
T PRK15029        202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ----GLILTGAKPVYMVPSRN  277 (755)
T ss_pred             CCCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeEEEeccccc
Confidence            45556788899999999999999999998 88999999999999999999999998764    344457777777532  


Q ss_pred             --------C-----HHHHHHhhcCC-Cee--------EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC--
Q 009523          275 --------D-----MEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--  330 (532)
Q Consensus       275 --------d-----le~Le~al~~~-~tk--------lV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~--  330 (532)
                              +     ++.++++++.+ .++        ++++.+|+ ..|.+.|+++|+++||++|++|+|||+++..+  
T Consensus       278 ~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F  356 (755)
T PRK15029        278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF  356 (755)
T ss_pred             ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHHhcCCeEEEECcccccccc
Confidence                    3     78899888543 234        89998888 78999999999999999999999999977643  


Q ss_pred             ----cc-ccc-----c-cCCc-EEEECCccccCCCCCcEEEEEEeChH--H--HHHHHHHhhhcCCC
Q 009523          331 ----NQ-KAL-----S-LGAD-LVLHSATKFIGGHNDVLAGSISGSGK--L--VTQIRNLHHVLGGA  381 (532)
Q Consensus       331 ----~~-~~l-----~-~gaD-ivv~S~sK~lgg~gd~~gG~lv~~~~--l--i~~l~~~~~~~G~~  381 (532)
                          +. .++     . .|+| +++.|.||.+++..  .+.++-.+..  .  .++++.....+.++
T Consensus       357 ~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~~~~id~~r~~~~l~~~qST  421 (755)
T PRK15029        357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATT  421 (755)
T ss_pred             CccccccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCCccccCHHHHHHHHHHHcCC
Confidence                21 233     3 6898 99999999999765  4555544322  2  24566655555543

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.56  E-value=1.8e-12  Score=149.85  Aligned_cols=288  Identities=15%  Similarity=0.156  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCH-HHHHHHHHHHh----ccCCC----EEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGAESTVIMASG-MSASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~i~~sSG-~~Ai~~al~al----l~~Gd----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..++++.|+++.|.+.+-+..+| +++..+.+.++    .++||    +|++++..|+++...    +...|++++.++.
T Consensus       544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s----a~~~G~~vv~v~~  619 (954)
T PRK05367        544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS----AVMAGMKVVVVAC  619 (954)
T ss_pred             HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH----HHHCCCEEEEECC
Confidence            45578999999999876666544 45554444333    25666    599999999886533    4556889888865


Q ss_pred             C-----CHHHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-C-cccccccCCcEEEE
Q 009523          274 A-----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-L-NQKALSLGADLVLH  344 (532)
Q Consensus       274 ~-----dle~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~-~~~~l~~gaDivv~  344 (532)
                      +     |+++|+++++++  ++.+|++.+|++..+...|+++|+++||++|+++++|.++... + ...+.+.|+|+++.
T Consensus       620 d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~  699 (954)
T PRK05367        620 DENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHL  699 (954)
T ss_pred             CCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEe
Confidence            3     789999999653  5788889888865333478999999999999999999997532 2 23566889999999


Q ss_pred             CCccccCCCC---CcEEEEEEeChHHHHHHHHHh----h---hcCCCc-cHH---------HHHHHHHhHHHHHHHHHHH
Q 009523          345 SATKFIGGHN---DVLAGSISGSGKLVTQIRNLH----H---VLGGAL-NPN---------AAYLIIRGMKTLHLRVQQQ  404 (532)
Q Consensus       345 S~sK~lgg~g---d~~gG~lv~~~~li~~l~~~~----~---~~G~~~-~~~---------~a~l~l~~l~tl~~r~~~~  404 (532)
                      |+||+|+.+-   +.-.|.+..++.+...+....    .   ..|... ++.         ..|+..-|.+.+....++.
T Consensus       700 s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~  779 (954)
T PRK05367        700 NLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVA  779 (954)
T ss_pred             cCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            9999976321   112567776654443332211    0   011111 111         1122223455566666667


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEE-EEcCC-HHHHHHHHHHcCCCceeecCCCcccc
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF-EVDGD-LTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf-~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      ..++.++++.|+++..   +.|++-....-          ...++.+ .++.. ......+.++|...|+....      
T Consensus       780 ~~~A~Yl~~~L~~~~~---~~~~~~~~~~~----------~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t------  840 (954)
T PRK05367        780 ILNANYIAKRLKDHYP---VLYTGANGRVA----------HECILDLRPLKESTGITVDDIAKRLIDYGFHAPT------  840 (954)
T ss_pred             HHHHHHHHHHHHhhcC---ccccCCCCCcc----------cceEEEeecccccCCCCHHHHHHHHHHCCCeEee------
Confidence            7889999998877532   33332110001          1235555 23310 12234556665443432111      


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                            ++           +.+ ++.+||++...+..+.++.|.++|..
T Consensus       841 ------~~-----------~pv-~~~l~i~ptE~~s~~elDr~~~al~~  871 (954)
T PRK05367        841 ------MS-----------FPV-AGTLMVEPTESESKAELDRFCDAMIA  871 (954)
T ss_pred             ------cC-----------Ccc-CCEEEEEeeecCCHHHHHHHHHHHHH
Confidence                  00           001 56899999877666667777776653

>PLN02880 tyrosine decarboxylase

Probab=99.55  E-value=1.4e-12  Score=141.75  Aligned_cols=234  Identities=14%  Similarity=0.138  Sum_probs=152.2

Q ss_pred             CchhHHHHH----HHHHhhhCCCc---------EEEeCCHHHHHHHHHHHhcc-----C-----CC-EEEEcCCCCcchH
Q 009523          199 GNPTTVVVE----EKMSALEGAES---------TVIMASGMSASTVMLLALVP-----A-----GG-HIVTTTDCYRKTR  254 (532)
Q Consensus       199 ~~p~~~~Le----~~lA~l~ga~~---------~i~~sSG~~Ai~~al~all~-----~-----Gd-~VIv~~~~y~~t~  254 (532)
                      ..|...++|    +.+++++|.++         .+++++|++|+..++.+...     .     .. .|++++..|.+..
T Consensus       116 ~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~  195 (490)
T PLN02880        116 TSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ  195 (490)
T ss_pred             cCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH
Confidence            344444444    56677777542         67888889998777654321     1     12 4566777887755


Q ss_pred             HHHHHhcccCCc-----EEEEeCC-----CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCE
Q 009523          255 IFIETVLPKMGI-----TATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI  319 (532)
Q Consensus       255 ~~~~~~l~~~Gv-----~v~~vd~-----~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~  319 (532)
                      .    .+...|+     ..+.+|.     .|+++|+++|++.     .+-+|+....+-.+|.+-|+++|+++|+++|++
T Consensus       196 K----aa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iw  271 (490)
T PLN02880        196 K----ACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMW  271 (490)
T ss_pred             H----HHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCE
Confidence            3    3334444     3333432     3889999988531     256677777778899999999999999999999


Q ss_pred             EEEECCCCCCCcccc-----cc--cCCcEEEECCccccCCCCCcEEEEEEeCh--HHHHHHHH---Hh-h----------
Q 009523          320 VCIDGTFATPLNQKA-----LS--LGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRN---LH-H----------  376 (532)
Q Consensus       320 lIvDet~a~~~~~~~-----l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~--~li~~l~~---~~-~----------  376 (532)
                      ++||++|+......+     +.  .++|.++.++||+++.+-  ..|+++.++  .+.+.+..   +. .          
T Consensus       272 lHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~--~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~  349 (490)
T PLN02880        272 FHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNF--DCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVD  349 (490)
T ss_pred             EEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCc--cEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCC
Confidence            999999887533221     11  368999999999998775  357666553  22222211   00 0          


Q ss_pred             ------hcCCCccHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccE
Q 009523          377 ------VLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGV  448 (532)
Q Consensus       377 ------~~G~~~~~~~a~l~l--~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~  448 (532)
                            ..|.....+..|..+  .|.+.+..++++..+.++++++.|++.|+++.+..|.                 .++
T Consensus       350 ~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~-----------------~~i  412 (490)
T PLN02880        350 YKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRI-----------------FSL  412 (490)
T ss_pred             hhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc-----------------eEE
Confidence                  011112234455443  3667788888888899999999999988865444332                 358


Q ss_pred             EEEEEcC
Q 009523          449 VSFEVDG  455 (532)
Q Consensus       449 vsf~l~g  455 (532)
                      +.|.+++
T Consensus       413 v~Fr~~~  419 (490)
T PLN02880        413 VCFRLVP  419 (490)
T ss_pred             EEEEEeC
Confidence            8898864

>PRK07678 aminotransferase; Validated

Probab=99.55  E-value=2.3e-12  Score=139.02  Aligned_cols=294  Identities=15%  Similarity=0.184  Sum_probs=178.0

Q ss_pred             CCCchhHHHHHHHHHhhhCCC-cEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHh-------
Q 009523          197 RYGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV-------  260 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~-------  260 (532)
                      .+.++...+|.++|+++.+.. .+++++||++|+..+++....       +| .+||.....|++........       
T Consensus        85 ~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~  164 (451)
T PRK07678         85 TQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRK  164 (451)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccc
Confidence            357788888999999988654 577779999999999875421       23 57888888888843211110       


Q ss_pred             --cccCCcEEEEeCCC--------------C---HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          261 --LPKMGITATVIDPA--------------D---MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       261 --l~~~Gv~v~~vd~~--------------d---le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                        .....-.+..++..              |   ++.+++.++   ..++.+|++|......|.+.+    ++++.++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~  244 (451)
T PRK07678        165 YKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQ  244 (451)
T ss_pred             cccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence              00000111222211              1   233566664   236999999998877777765    889999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh----hhcCC--Cc
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLGG--AL  382 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----~~~G~--~~  382 (532)
                      +||+++|+||++...      +.......-.|+++  ++|.++++. ...|.+++++++.+.+....    ..+++  ..
T Consensus       245 ~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~-~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~g  321 (451)
T PRK07678        245 KHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAY-LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGG  321 (451)
T ss_pred             HcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCC-cceeEEEEcHHHHHHHhccCcccccccCCCCCc
Confidence            999999999995321      11222344579887  799999753 34677888888887765311    01222  24


Q ss_pred             cHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-
Q 009523          383 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-  455 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-  455 (532)
                      +|..+..++..++.+..  ..++..+..+++.+.|++    ++.+..                  .+|.|.|+.+++.. 
T Consensus       322 np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~------------------vrg~Gl~~~i~~~~~  383 (451)
T PRK07678        322 NPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGD------------------IRGKGLLVGIELVND  383 (451)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE------------------EEeeceEEEEEEecC
Confidence            67777777777776643  223333444455554432    232222                  25678899999842 


Q ss_pred             -------CHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHH
Q 009523          456 -------DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKAD  524 (532)
Q Consensus       456 -------~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~d  524 (532)
                             +...+.++...+...|+-+...+       |..      +        -..+.|||+..+    ++++.+++.
T Consensus       384 ~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g-------~~v------~--------~~~~~lrl~Ppl~it~~eid~~~~~  442 (451)
T PRK07678        384 KETKEPADNDKVASVVAACKEKGLIIGKNG-------DTV------A--------GYNNVLTLSPPLVISSEEIAFIVGT  442 (451)
T ss_pred             CcccCcCchHHHHHHHHHHHHCCcEEeecC-------ccc------c--------CCCCEEEEECCCcCCHHHHHHHHHH
Confidence                   12334566666655554332211       000      0        013679997655    556667777


Q ss_pred             HHHHHhhC
Q 009523          525 VLQALHAI  532 (532)
Q Consensus       525 L~~AL~~l  532 (532)
                      |+++|+++
T Consensus       443 l~~~l~~~  450 (451)
T PRK07678        443 LKTALERI  450 (451)
T ss_pred             HHHHHHhc
Confidence            77777653

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.55  E-value=2.2e-12  Score=139.36  Aligned_cols=291  Identities=17%  Similarity=0.189  Sum_probs=174.0

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchH-HHHHHh-c---c-
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIETV-L---P-  262 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~-~~~~~~-l---~-  262 (532)
                      +..+++.++...+|.++|+++.+.  +.+++++||++|+..+++...  ....+||+-...|++.. ..+... .   . 
T Consensus       105 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~  184 (459)
T PRK06082        105 FSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQ  184 (459)
T ss_pred             CccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCccccc
Confidence            334567889999999999999864  467888999999999987442  23367888888888743 111100 0   0 


Q ss_pred             cCC---cEEEEeC--------CCC--------HHHHHHhhcC-CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCE
Q 009523          263 KMG---ITATVID--------PAD--------MEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAI  319 (532)
Q Consensus       263 ~~G---v~v~~vd--------~~d--------le~Le~al~~-~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~  319 (532)
                      .++   -.+..++        ..+        ++.+++.++. .++.+|++|...+..+.+.|   +++|.++|++||++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~l  264 (459)
T PRK06082        185 GMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVL  264 (459)
T ss_pred             CCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            000   0112222        111        3557777752 26899999998876444555   88999999999999


Q ss_pred             EEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh
Q 009523          320 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  393 (532)
Q Consensus       320 lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~  393 (532)
                      +|+||++...      +.......-.|+++  ++|.++++. ...|.+++++++...............+|..+..++..
T Consensus       265 lI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~-~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~  341 (459)
T PRK06082        265 LIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGL-VPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALAT  341 (459)
T ss_pred             EEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCC-CcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence            9999995431      11223344578887  899999753 23566777776654332110111223467777777777


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-------HHH
Q 009523          394 MKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-------TAT  460 (532)
Q Consensus       394 l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-------~~~  460 (532)
                      ++.+..  ..++..+..+++.+.|++    +|.+.                  ..+|.|.|+.+++..+.       +..
T Consensus       342 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrG~Gl~~~ve~~~~~~~~~~~~~~~  403 (459)
T PRK06082        342 IEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIG------------------DVRGIGLLWGVELVTDRHTKERAYDEA  403 (459)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCee------------------eeeeccceeEEEEccCccccCccHHHH
Confidence            766542  233344445555555543    22222                  23567899999996321       223


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~~  531 (532)
                      ..++..+...|+-+..          .                 ..+.|||+..    -++.+..++.++++|.+
T Consensus       404 ~~~~~~~~~~Gvl~~~----------~-----------------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        404 EAVLYRCLNNGLSFKV----------S-----------------QGNVIQLSPPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             HHHHHHHHhCCCEEEe----------c-----------------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            4444444333322211          0                 1356888744    46677777777777754

>PRK07482 hypothetical protein; Provisional

Probab=99.55  E-value=3.2e-12  Score=138.30  Aligned_cols=238  Identities=12%  Similarity=0.070  Sum_probs=148.8

Q ss_pred             CCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHH-H-------
Q 009523          196 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-I-------  257 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~-~-------  257 (532)
                      ..+.++...+|.++|+++..  .+.+++++||++|+..+++....       + ..+||.....|++.... +       
T Consensus        89 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~  168 (461)
T PRK07482         89 VGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSL  168 (461)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCch
Confidence            35678888899999999875  35788899999999999985421       2 25788888889884211 0       


Q ss_pred             -HHhcccCCcEEEEeCCC------------------CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHH
Q 009523          258 -ETVLPKMGITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSD  311 (532)
Q Consensus       258 -~~~l~~~Gv~v~~vd~~------------------dle~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~  311 (532)
                       .......--.+..++..                  +++++++.+.   ..++.+|++|......|.+.+    +++|.+
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~  248 (461)
T PRK07482        169 FHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQA  248 (461)
T ss_pred             hhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence             00011000011112110                  3567787774   236999999998877777754    789999


Q ss_pred             HHHhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-----hhhcCC
Q 009523          312 LCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGG  380 (532)
Q Consensus       312 la~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-----~~~~G~  380 (532)
                      +|++||+++|+||++...      +.......-+|+++  +.|.++|+- ...|.+++++++.+.+...     ...++.
T Consensus       249 lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~  325 (461)
T PRK07482        249 VLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAY-APLSGSIVGEKVWDVLEQGSDEHGAIGHGW  325 (461)
T ss_pred             HHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCc-cccceeeecHHHHHHHhcccccCCccccCC
Confidence            999999999999995422      22333344579998  789998752 1346667777777766421     001222


Q ss_pred             --CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEE
Q 009523          381 --ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE  452 (532)
Q Consensus       381 --~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~  452 (532)
                        ..+|..+.+++..++.+..  ..++..+..+++.+.|+    ++|.+..                  .+|.|.|+.++
T Consensus       326 T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~------------------vrG~Glm~gie  387 (461)
T PRK07482        326 TYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGE------------------VRGVGMLAAVE  387 (461)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE------------------EeeceeEEEEE
Confidence              2467777777777765532  12233333444444443    2333322                  35678899999


Q ss_pred             Ec
Q 009523          453 VD  454 (532)
Q Consensus       453 l~  454 (532)
                      +.
T Consensus       388 l~  389 (461)
T PRK07482        388 FV  389 (461)
T ss_pred             ec
Confidence            95

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.54  E-value=1.1e-12  Score=151.49  Aligned_cols=159  Identities=22%  Similarity=0.302  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccC--CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          203 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l~~--Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      ..++++.++++.|.+  ++-++.+++++.+.+++++ +++  +|+|++++..|+.+...++..++..|++++.++..+  
T Consensus       123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--  200 (954)
T PRK05367        123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--  200 (954)
T ss_pred             HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--
Confidence            344678999999985  4577788888877777765 445  489999999999998888777888999999988643  


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCC-CCCCcccccccCCcEEEECCccc-----cC
Q 009523          278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKF-----IG  351 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~-a~~~~~~~l~~gaDivv~S~sK~-----lg  351 (532)
                      ++.   .+ ++..+++..|+ .+|.+.|+++|+++||++|+++++|... +......|-++|+|+++.|.+||     +|
T Consensus       201 d~~---~~-~~~~vlvq~p~-~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~G  275 (954)
T PRK05367        201 ALD---HD-DVFGVLLQYPG-TSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFG  275 (954)
T ss_pred             CCC---cc-cEEEEEEecCC-CCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCC
Confidence            111   22 57778787764 7999999999999999999999999865 33345578889999999999999     77


Q ss_pred             CCCCcEEEEEEeChHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQI  371 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l  371 (532)
                      |++   +|+++.++++.+.+
T Consensus       276 GP~---aGflavr~~~~r~l  292 (954)
T PRK05367        276 GPH---AAYFAVRDAYKRSM  292 (954)
T ss_pred             CCC---EEEEEECHHHHhhC
Confidence            775   89999988776655

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.54  E-value=1.6e-12  Score=139.30  Aligned_cols=288  Identities=14%  Similarity=0.117  Sum_probs=175.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CCCEEEEcCCCCcchHHHHHHh-------
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AGGHIVTTTDCYRKTRIFIETV-------  260 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-------~Gd~VIv~~~~y~~t~~~~~~~-------  260 (532)
                      .+.++...+|.++|+++.+.  +.+++++||++|+..+++....       ...+||.....|++........       
T Consensus        82 ~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~  161 (428)
T PRK07986         82 GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSM  161 (428)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhh
Confidence            45778888999999998753  5788889999999999874431       2357999999998832111000       


Q ss_pred             ---cccCCcEEEEeC-----------CCCHHHHHHhhcC--CCeeEEEEeCC-CCCCCccc-C---HHHHHHHHHhCCCE
Q 009523          261 ---LPKMGITATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCV-D---VKLVSDLCHKKGAI  319 (532)
Q Consensus       261 ---l~~~Gv~v~~vd-----------~~dle~Le~al~~--~~tklV~lesP-~NptG~v~-d---l~~I~~la~~~gi~  319 (532)
                         .......+.+++           .+|++++++.++.  .++.+|++|.. +...|.+. +   +++|.++|++||++
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~l  241 (428)
T PRK07986        162 HSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGIL  241 (428)
T ss_pred             hhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence               000001111221           2356778887752  25889999985 55455443 2   88999999999999


Q ss_pred             EEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---hhcC--CCccHHHHH
Q 009523          320 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLG--GALNPNAAY  388 (532)
Q Consensus       320 lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---~~~G--~~~~~~~a~  388 (532)
                      +|+||++...      +.........|+++  ++|.++|+- +..|++++++++.+.+....   ..++  ...+|..+.
T Consensus       242 LI~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~a  318 (428)
T PRK07986        242 LIADEIATGFGRTGKLFACEHAGIAPDILC--LGKALTGGT-MTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA  318 (428)
T ss_pred             EEEeccccCCccCCCeeeecccCCCCCEEE--echhhhCCc-ccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHH
Confidence            9999996321      11122333468886  899997541 34677778888888775411   0112  124577777


Q ss_pred             HHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009523          389 LIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA  466 (532)
Q Consensus       389 l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~  466 (532)
                      .++..++.+..  .+++..+..+++.+.|++..     .+|.+          .+.+|.|.++.+++... .....+.+.
T Consensus       319 aa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~-----~~~~i----------~~vRg~Gl~~~ve~~~~-~~~~~~~~~  382 (428)
T PRK07986        319 VANASLSLLESGDWQQQVAAIEAQLREELAPLR-----DAPMV----------ADVRVLGAIGVVETTRP-VNMAALQRF  382 (428)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-----cCCCE----------EeEeccceEEEEEeCCc-ccHHHHHHH
Confidence            77767766542  23444455555555555421     12221          12356788999999643 234456666


Q ss_pred             cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHHHhh
Q 009523          467 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----GVEDFEDLKADVLQALHA  531 (532)
Q Consensus       467 L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G~ed~~dli~dL~~AL~~  531 (532)
                      +...++.+...                            .+.|||.-    ..++.+.+++.|+++|+.
T Consensus       383 l~~~Gl~~~~~----------------------------g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        383 FVEQGVWIRPF----------------------------GKLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHCCcEEEec----------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            65445433211                            13566643    446777778888887753

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.54  E-value=7.6e-12  Score=134.27  Aligned_cols=216  Identities=19%  Similarity=0.247  Sum_probs=144.8

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc--c--------cC
Q 009523          198 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL--P--------KM  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l--~--------~~  264 (532)
                      +.++...+|.++|.++.. .+.+.+++||++|+..+++...  ....+||.-...|++........-  .        ..
T Consensus        90 ~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  169 (428)
T PRK12389         90 TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA  169 (428)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCC
Confidence            567778888899988764 4678889999999999987442  234678888888888432211110  0        01


Q ss_pred             C------cEEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC---
Q 009523          265 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  329 (532)
Q Consensus       265 G------v~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~---  329 (532)
                      |      -.+..++..|++.+++.+++  .++.+|++|...+..|.+.|    +++|.++|+++|+++|+||++...   
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~  249 (428)
T PRK12389        170 GVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFM  249 (428)
T ss_pred             CCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence            1      13444566789999988853  25899999999888898888    999999999999999999996532   


Q ss_pred             Cc--ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-hhcCC--CccHHHHHHHHHhHHHHHH--HHH
Q 009523          330 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGG--ALNPNAAYLIIRGMKTLHL--RVQ  402 (532)
Q Consensus       330 ~~--~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-~~~G~--~~~~~~a~l~l~~l~tl~~--r~~  402 (532)
                      ..  ......-.|+++  ++|.++++  ...|.+++++++++.+.... ..+++  ..+|..+.+++..++.+..  ..+
T Consensus       250 ~~~a~~~~gv~PDivt--~gK~lggG--~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~  325 (428)
T PRK12389        250 YGGAQDLLGVEPDLTA--LGKIIGGG--LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYE  325 (428)
T ss_pred             cchhhHHhCCCCCeee--echhhcCC--CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHH
Confidence            11  122334568875  89999864  34566788888888774211 11222  3467777777777766532  233


Q ss_pred             HHHHHHHHHHHHHHh
Q 009523          403 QQNSTALRMAKILEA  417 (532)
Q Consensus       403 ~~~~~a~~la~~L~~  417 (532)
                      +..+..+++.+.|++
T Consensus       326 ~~~~~g~~l~~~L~~  340 (428)
T PRK12389        326 KLDRLGAMLEEGILE  340 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444455555555543

>PLN02590 probable tyrosine decarboxylase

Probab=99.53  E-value=5.6e-12  Score=137.77  Aligned_cols=254  Identities=15%  Similarity=0.171  Sum_probs=164.1

Q ss_pred             CCCCCCCchhHHHHH----HHHHhhhCCCc---------EEEeCCHHHHHHHHHHHhcc-----------CCCEEEEcCC
Q 009523          193 FEYGRYGNPTTVVVE----EKMSALEGAES---------TVIMASGMSASTVMLLALVP-----------AGGHIVTTTD  248 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le----~~lA~l~ga~~---------~i~~sSG~~Ai~~al~all~-----------~Gd~VIv~~~  248 (532)
                      ..++....|...++|    +.|++++|.++         .+++++|++|+..++.+...           +.-.|++++.
T Consensus       158 ~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~  237 (539)
T PLN02590        158 VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ  237 (539)
T ss_pred             ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC
Confidence            445555666666666    55666666532         68889999998777654311           1114556777


Q ss_pred             CCcchHHHHHHhcccCCc-----EEEEeCC-----CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHH
Q 009523          249 CYRKTRIFIETVLPKMGI-----TATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLC  313 (532)
Q Consensus       249 ~y~~t~~~~~~~l~~~Gv-----~v~~vd~-----~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la  313 (532)
                      .|.+...    .+...|+     ..+.+|.     .|+++|+++|++.     .+-+|+....+-.+|.+-|+++|+++|
T Consensus       238 aH~Sv~K----Aa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~  313 (539)
T PLN02590        238 THSSFRK----ACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIA  313 (539)
T ss_pred             chHHHHH----HHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHH
Confidence            8877543    3333343     3333441     3899999998542     245677777778899999999999999


Q ss_pred             HhCCCEEEEECCCCCCCcccc----ccc---CCcEEEECCccccCCCCCcEEEEEEeCh--HHHHHHHH---Hh------
Q 009523          314 HKKGAIVCIDGTFATPLNQKA----LSL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRN---LH------  375 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~~~~~~----l~~---gaDivv~S~sK~lgg~gd~~gG~lv~~~--~li~~l~~---~~------  375 (532)
                      ++||++++||++|+......+    +..   .+|-+..++||++.-+-+  .|++..++  .+.+.+..   +.      
T Consensus       314 ~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~~l~~a~~~~~~YL~~~~~~  391 (539)
T PLN02590        314 KKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRYSLIDALKTNPEYLEFKVSK  391 (539)
T ss_pred             HHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence            999999999999887543222    122   479999999999987653  56665543  23332211   11      


Q ss_pred             -----------hhcCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhc
Q 009523          376 -----------HVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM  442 (532)
Q Consensus       376 -----------~~~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~  442 (532)
                                 ..++-....+..|+.++  |.+.+..++++..+.++++.+.+++.|.++-+..|.+             
T Consensus       392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l-------------  458 (539)
T PLN02590        392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYF-------------  458 (539)
T ss_pred             cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce-------------
Confidence                       01111223455666655  5567888899999999999999999988765554432             


Q ss_pred             CCcccEEEEEEcC---CH----HHHHHHHHHcCC
Q 009523          443 TGFGGVVSFEVDG---DL----TATIKFIDALKI  469 (532)
Q Consensus       443 ~g~G~~vsf~l~g---~~----~~~~~~l~~L~~  469 (532)
                          ++|.|.+.+   +.    ....++++++..
T Consensus       459 ----~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~  488 (539)
T PLN02590        459 ----SLVCFRLAPVDGDEDQCNERNRELLAAVNS  488 (539)
T ss_pred             ----EEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence                478888763   11    223456666654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.53  E-value=2.2e-12  Score=138.30  Aligned_cols=287  Identities=13%  Similarity=0.151  Sum_probs=176.5

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchH-HHHHH------
Q 009523          197 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTR-IFIET------  259 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~-~~~~~------  259 (532)
                      .+.++...+|.++|+++..  .+.+++++||++|+..+++....       +| .+||.....|++.. ..+..      
T Consensus        83 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~  162 (429)
T PRK06173         83 GFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG  162 (429)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchh
Confidence            4567888889999999874  36788899999999999875431       33 57888888888832 11100      


Q ss_pred             hcccCC---cEEEEeCC-----------CCHHHHHHhhc--CCCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCCC
Q 009523          260 VLPKMG---ITATVIDP-----------ADMEGLEAALN--NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGA  318 (532)
Q Consensus       260 ~l~~~G---v~v~~vd~-----------~dle~Le~al~--~~~tklV~lesP-~NptG~v~d----l~~I~~la~~~gi  318 (532)
                      .-..++   ..+.+++.           .+++.|++.+.  ..++.+|++|.. .+..|.+.+    +++|.++|++||+
T Consensus       163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~  242 (429)
T PRK06173        163 MHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV  242 (429)
T ss_pred             hhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence            000000   01122221           13566777774  236999999985 766676644    7899999999999


Q ss_pred             EEEEECCCCCCCc-------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---hhcCC--CccHHH
Q 009523          319 IVCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGG--ALNPNA  386 (532)
Q Consensus       319 ~lIvDet~a~~~~-------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---~~~G~--~~~~~~  386 (532)
                      ++|+||++ +++.       ........||++  ++|.++|+- +..+.+++++++.+.+....   ..++.  ..+|..
T Consensus       243 llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG~-~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~  318 (429)
T PRK06173        243 LLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALTGGY-LTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLA  318 (429)
T ss_pred             eEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhhCCc-cccceEEecHHHHHHHhcCCCCccccCCCCCcCHHH
Confidence            99999996 3221       222333468887  899997542 34677778888887764210   11222  246777


Q ss_pred             HHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHH
Q 009523          387 AYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI  464 (532)
Q Consensus       387 a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l  464 (532)
                      +..++..++.+..  ..++..++.+++.+.|++..     .+|.+          ...+|.|.|+.+++... .....+.
T Consensus       319 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~-----~~~~v----------~~vRg~Gl~~~iel~~~-~~~~~i~  382 (429)
T PRK06173        319 CAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAA-----EFDSV----------AEVRVLGAIGVVEMKEP-VNMATLQ  382 (429)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-----cCCCe----------eeeeccceEEEEEeCCc-ccHHHHH
Confidence            7777777776542  23444455556666665321     12211          11245788999999643 2345566


Q ss_pred             HHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhh
Q 009523          465 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       465 ~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~dL~~AL~~  531 (532)
                      +.+...++-+...+                            +.|||.    +..++.+.+++.|+++|.+
T Consensus       383 ~~l~e~Gi~v~~~g----------------------------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        383 PRFVEHGIWVRPFG----------------------------KLVYIMPPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             HHHHHCCeEEEecC----------------------------CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            66655454443211                            345554    4446778888888888864

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.53  E-value=3e-12  Score=138.17  Aligned_cols=289  Identities=14%  Similarity=0.158  Sum_probs=175.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cC-CCEEEEcCCCCcchHHHHHHh------
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PA-GGHIVTTTDCYRKTRIFIETV------  260 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all-------~~-Gd~VIv~~~~y~~t~~~~~~~------  260 (532)
                      .+.++...+|.++|+++.+.  +.+++++||++|+..+++...       .+ ..+||.....|++.......+      
T Consensus        93 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~  172 (453)
T PRK06943         93 GCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALF  172 (453)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhh
Confidence            45678888899999998764  468888999999999988542       12 357999999998843111000      


Q ss_pred             ---cccCCcEEEEeCC-----------------CCHHHHHHhhcC--CCeeEEEEeC-CCCCCCcccC----HHHHHHHH
Q 009523          261 ---LPKMGITATVIDP-----------------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       261 ---l~~~Gv~v~~vd~-----------------~dle~Le~al~~--~~tklV~les-P~NptG~v~d----l~~I~~la  313 (532)
                         ....-..+..++.                 .+++++++.++.  .++.+|++|. +....|.+.+    +++|.++|
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc  252 (453)
T PRK06943        173 KDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALC  252 (453)
T ss_pred             hcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHH
Confidence               0000001112211                 124677777752  3699999998 4766677654    78999999


Q ss_pred             HhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH----hhhcCCC--
Q 009523          314 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGA--  381 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~----~~~~G~~--  381 (532)
                      ++||+++|.||++...      +..+....-.|+++  +.|.++|+- ...|.+++++++.+.+...    ....+.+  
T Consensus       253 ~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~gG~-~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~  329 (453)
T PRK06943        253 DRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGISGGY-LPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYT  329 (453)
T ss_pred             HHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhccCc-ccceEEEEcHHHHHhhcccCccCCccCCCCCC
Confidence            9999999999995321      11233344579998  789998642 2467778888888766421    0012222  


Q ss_pred             ccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---
Q 009523          382 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---  456 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---  456 (532)
                      -+|..+..++..++.+..  .+++..+..+++.+.|++.   .  .+|.+          .+.+|.|.|+.+++..+   
T Consensus       330 gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l---~--~~~~v----------~~vrG~Gl~~gvel~~~~~~  394 (453)
T PRK06943        330 GNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPL---A--AHPQV----------RHLRQRGTIFAFDVALDGDA  394 (453)
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH---h--cCCCE----------EeEeccccEEEEEEccCCCc
Confidence            367777777777766542  1233334444555555432   0  12222          12367889999999622   


Q ss_pred             -HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhh
Q 009523          457 -LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       457 -~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~dL~~AL~~  531 (532)
                       .....++...+...++-+..                            ..+.+||+    +..++.+.+++.|+++|++
T Consensus       395 ~~~~~~~i~~~~~~~Gll~~~----------------------------~g~~l~~~Ppl~it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        395 ARTFSRRFFEAALERELLLRP----------------------------IGTTVYLMPPYVLDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             chHHHHHHHHHHHHCCcEEEe----------------------------cCCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence             12244555555443432211                            02357776    3446677778888887764

>PRK06541 hypothetical protein; Provisional

Probab=99.53  E-value=6.5e-12  Score=135.81  Aligned_cols=240  Identities=14%  Similarity=0.171  Sum_probs=151.9

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHHh------
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV------  260 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~~~~~~------  260 (532)
                      .+.++...+|.++|+++...  +.+++++||++|+..+++....        ...+||.-...|++........      
T Consensus        91 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~  170 (460)
T PRK06541         91 SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF  170 (460)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhh
Confidence            46678888899999998753  5788899999999999874321        1367888888888843211111      


Q ss_pred             ---cccCCcEEEEeCC----------CC--------HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHH
Q 009523          261 ---LPKMGITATVIDP----------AD--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  312 (532)
Q Consensus       261 ---l~~~Gv~v~~vd~----------~d--------le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~l  312 (532)
                         ....-..+..++.          ++        ++.+++.++   ..++.+|++|...++.|.+.+    +++|.++
T Consensus       171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~l  250 (460)
T PRK06541        171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREI  250 (460)
T ss_pred             ccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHH
Confidence               0000011122221          12        356777775   236889999988999999988    9999999


Q ss_pred             HHhCCCEEEEECCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcC--CCc
Q 009523          313 CHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLG--GAL  382 (532)
Q Consensus       313 a~~~gi~lIvDet~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G--~~~  382 (532)
                      |++||+++|+||++... -     .........|+++  ++|.++++ -...|++++++++++.+.....  .++  ...
T Consensus       251 c~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G-~~pigav~~~~~i~~~~~~~~~~~~~~~T~~g  327 (460)
T PRK06541        251 CDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSG-YSPLGAMIASDRLFEPFLDGPTMFLHGYTFGG  327 (460)
T ss_pred             HHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCC-ccceeEEEEcHHHHHHhhcCCCccccCCCCCC
Confidence            99999999999996321 1     1222233468886  89999853 2236777888888877653211  112  224


Q ss_pred             cHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          383 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      +|..+..++..++.+..  ..++..+..+++.+.|++...     +|.+          ...+|.|.|+.+++.
T Consensus       328 np~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-----~~~v----------~~vrg~Gl~~~ie~~  386 (460)
T PRK06541        328 HPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-----LPIV----------GDVRGDGYFYGIELV  386 (460)
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-----CCCe----------EEEEecceEEEEEEe
Confidence            56777777766666532  234444556666666655311     1211          123567889999984

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.52  E-value=2.9e-12  Score=137.13  Aligned_cols=286  Identities=14%  Similarity=0.117  Sum_probs=169.5

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhcc----
Q 009523          197 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP----  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l~----  262 (532)
                      .+.++...+|.++|+++.+  .+.+.+++||++|+..+++....       +| .+|+.....|++..........    
T Consensus        79 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~  158 (422)
T PRK05630         79 GLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGG  158 (422)
T ss_pred             CcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCccc
Confidence            3567778889999999874  36788999999999999874321       23 5788889888884211111100    


Q ss_pred             ---cCC---cEEEEeCCC--------C----HHHHHHhhcCCCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCCCE
Q 009523          263 ---KMG---ITATVIDPA--------D----MEGLEAALNNNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAI  319 (532)
Q Consensus       263 ---~~G---v~v~~vd~~--------d----le~Le~al~~~~tklV~lesP-~NptG~v~d----l~~I~~la~~~gi~  319 (532)
                         .++   ..+.+++..        +    .+.+++.+.+ ++.+|++|.. ....|.+.+    +++|.++|++||++
T Consensus       159 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~l  237 (422)
T PRK05630        159 MHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDIL  237 (422)
T ss_pred             ccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence               000   011222211        1    2455666655 6999999985 666676553    78999999999999


Q ss_pred             EEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh----hhcCC--CccHHHH
Q 009523          320 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLGG--ALNPNAA  387 (532)
Q Consensus       320 lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----~~~G~--~~~~~~a  387 (532)
                      +|+||++...      +.......-.||++  ++|.++|+- ..+|++++++++.+.+....    ..++.  ..+|..+
T Consensus       238 lI~DEv~tG~GrtG~~~a~~~~gv~PDi~t--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~  314 (422)
T PRK05630        238 LIADEIATGFGRTGELFATLAAGVTPDIMC--VGKALTGGF-MSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC  314 (422)
T ss_pred             EEEecceeCCCcCchhhHHHhcCCCCCeee--eechhhcCc-cccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHH
Confidence            9999996321      11122233467885  899997531 24678888888887764210    01122  2467777


Q ss_pred             HHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH
Q 009523          388 YLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID  465 (532)
Q Consensus       388 ~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~  465 (532)
                      ..++..++.+..  ..++..+..+++.+.|+..   .  .+|.+          ...+|.|.|+.+++... .....+.+
T Consensus       315 aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l---~--~~~~v----------~~vRg~Gl~~~ie~~~~-~~~~~~~~  378 (422)
T PRK05630        315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSPL---A--HLPGV----------ADVRVLGAIGVVEMEQP-VDMEEATQ  378 (422)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh---h--cCCCe----------eeeeccccEEEEEECCc-ccHHHHHH
Confidence            766666666542  2233334445555544421   1  12221          12357799999999642 22345555


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALH  530 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~  530 (532)
                      .+...++-+...                            .+.|||...    .++.+++++.|+++|.
T Consensus       379 ~~~~~Gl~~~~~----------------------------g~~l~~~PpL~it~~~i~~~~~~l~~al~  419 (422)
T PRK05630        379 AAVDHGVWLRPF----------------------------GRLVYVMPPYITTSEQIAQICAALAAAVK  419 (422)
T ss_pred             HHHHCCeEEEec----------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHh
Confidence            554444332211                            135666554    3566777777777765

>PRK06062 hypothetical protein; Provisional

Probab=99.52  E-value=7.5e-12  Score=135.07  Aligned_cols=203  Identities=12%  Similarity=0.107  Sum_probs=133.8

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc-----c-
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----P-  262 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l-----~-  262 (532)
                      +....+.++...+|.++|+++...  +.+.+++||++|+..+++...  ....+||.....|++........-     . 
T Consensus        87 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~  166 (451)
T PRK06062         87 TVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWP  166 (451)
T ss_pred             CcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCccccc
Confidence            334467788889999999998753  578889999999999987542  233578888888888432111110     0 


Q ss_pred             ----cCCcEEEEeC---------CCC-------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009523          263 ----KMGITATVID---------PAD-------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  315 (532)
Q Consensus       263 ----~~Gv~v~~vd---------~~d-------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I~~la~~  315 (532)
                          ..|+.....+         .+|       ++++++.++.   .++.+|++|......|.+.|    +++|.++|++
T Consensus       167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~  246 (451)
T PRK06062        167 NDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDR  246 (451)
T ss_pred             CCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence                0122111111         012       5677877742   36899999999888888888    9999999999


Q ss_pred             CCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC--CCccHHHH
Q 009523          316 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAA  387 (532)
Q Consensus       316 ~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G--~~~~~~~a  387 (532)
                      ||+++|+||++...      +.........|+++  ++|.++++- +..|.+++++++.+.+.......+  ...+|..+
T Consensus       247 ~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t--~gK~lggG~-~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~  323 (451)
T PRK06062        247 HGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT--FAKGVNSGY-VPLGGVAISEAIAATFADRPYPGGLTYSGHPLAC  323 (451)
T ss_pred             cCCEEEeeccccCCCcCcHHHHHHhcCCCCCeee--echhhhcCC-cCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHH
Confidence            99999999996532      11222334578776  899999642 235667777788877653111122  12357777


Q ss_pred             HHHHHhHHHHH
Q 009523          388 YLIIRGMKTLH  398 (532)
Q Consensus       388 ~l~l~~l~tl~  398 (532)
                      ..++..++.+.
T Consensus       324 Aaa~a~L~~l~  334 (451)
T PRK06062        324 AAAVATINAME  334 (451)
T ss_pred             HHHHHHHHHHH
Confidence            77777777654

>PRK07481 hypothetical protein; Provisional

Probab=99.52  E-value=8.7e-12  Score=134.55  Aligned_cols=289  Identities=13%  Similarity=0.115  Sum_probs=171.6

Q ss_pred             CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhc-----
Q 009523          198 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVL-----  261 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l-----  261 (532)
                      +.++...+|.++|+++.+   .+.+.+++||++|+..+++....       +| .+||.....|++.......+-     
T Consensus        83 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~  162 (449)
T PRK07481         83 TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF  162 (449)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence            467888899999999874   35688889999999999875421       23 578888988988431110100     


Q ss_pred             ----c--cCCcEEEEeC------C--CCHHH--------HHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHH
Q 009523          262 ----P--KMGITATVID------P--ADMEG--------LEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  312 (532)
Q Consensus       262 ----~--~~Gv~v~~vd------~--~dle~--------Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~l  312 (532)
                          .  ..|+.....+      .  .|+++        +++++.   ..++.+|++|......|.+.+    +++|.++
T Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l  242 (449)
T PRK07481        163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV  242 (449)
T ss_pred             ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence                0  0122211111      1  14333        344442   236999999999877787765    8899999


Q ss_pred             HHhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-----hhcCCC
Q 009523          313 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGA  381 (532)
Q Consensus       313 a~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-----~~~G~~  381 (532)
                      |++||+++|.||++...      +.......-.||++  ++|.++++. +..|++++++++.+.+....     ..++.+
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  319 (449)
T PRK07481        243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGY-VPLGATMVNARIADAFEANADFGGAIMHGYT  319 (449)
T ss_pred             HHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCC-cCceEEEEcHHHHHHHhccCccccccccCCC
Confidence            99999999999995421      11233344578988  789998642 23577788888887765311     112322


Q ss_pred             --ccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-
Q 009523          382 --LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-  456 (532)
Q Consensus       382 --~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-  456 (532)
                        .+|..+..++..++.+..  ..++..+..+++.+.|++...    .+|.          ..+.+|.|.|+.+++..+ 
T Consensus       320 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~----------i~~vrG~Glm~gi~l~~~~  385 (449)
T PRK07481        320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKE----RFEL----------VGDVRGKGLMLALDLVADK  385 (449)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh----cCCC----------eEEEeecceEEEEEecccc
Confidence              367777776666665532  223333444455555543210    0111          012356788999998532 


Q ss_pred             ---------HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHH
Q 009523          457 ---------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----GVEDFEDLKA  523 (532)
Q Consensus       457 ---------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G~ed~~dli~  523 (532)
                               ......+...+...++-+...                            .+.+||+-    ..++.+.+++
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----------------------------g~~i~l~Ppl~it~~eid~~~~  437 (449)
T PRK07481        386 ATREPIDPSKGYANAVADVARENGVLVRPS----------------------------GTKIILSPPLVIQREDVDRIVD  437 (449)
T ss_pred             cccCCCCchhHHHHHHHHHHHhCCeEEEec----------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence                     122344555544344332211                            12466663    3466777788


Q ss_pred             HHHHHHhh
Q 009523          524 DVLQALHA  531 (532)
Q Consensus       524 dL~~AL~~  531 (532)
                      .|+++|++
T Consensus       438 ~l~~~l~~  445 (449)
T PRK07481        438 ALDAGLSA  445 (449)
T ss_pred             HHHHHHHh
Confidence            88888765

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.51  E-value=1.3e-11  Score=133.46  Aligned_cols=287  Identities=14%  Similarity=0.141  Sum_probs=168.7

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcc-----c--C
Q 009523          197 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----K--M  264 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~-----~--~  264 (532)
                      .+.++...+|.++|+++.+.   +.+++++||++|+..+++...  ....+||.....|+|........-.     +  +
T Consensus        93 ~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~  172 (451)
T PRK06918         93 VMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGF  172 (451)
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccC
Confidence            44578888899999998753   468888999999999987442  2335788888888885322111100     0  0


Q ss_pred             C---cEEEEeCCCC-----------------HHHHHHhh----cCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhC
Q 009523          265 G---ITATVIDPAD-----------------MEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  316 (532)
Q Consensus       265 G---v~v~~vd~~d-----------------le~Le~al----~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~  316 (532)
                      +   ..+..++..+                 ++.+++.+    ..+++.+|++|......|.+.+    +++|.++|++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~  252 (451)
T PRK06918        173 GPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH  252 (451)
T ss_pred             CCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc
Confidence            1   1122222110                 12344333    2336899999887766676554    78999999999


Q ss_pred             CCEEEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHH
Q 009523          317 GAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       317 gi~lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                      |+++|+||++.....      ...+..-.|++  |++|.++++  ...|++++++++++.+...........++..+.++
T Consensus       253 gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~G--~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa  328 (451)
T PRK06918        253 GILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGAG--VPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAA  328 (451)
T ss_pred             CCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcCC--CccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHH
Confidence            999999999653211      11122226755  699999953  56888999988887765332222223466666665


Q ss_pred             HHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-------CH
Q 009523          391 IRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-------DL  457 (532)
Q Consensus       391 l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-------~~  457 (532)
                      ...++.+..  ..++..+..+++.+.|++    ++.+..                  .+|.|.++.+++..       +.
T Consensus       329 ~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~------------------vrg~G~~~~~~~~~~~~~~~~~~  390 (451)
T PRK06918        329 LAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGD------------------VRGLGAMCAFELVQDRKTKEPDK  390 (451)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCcee------------------eccceeEEEEEEccCCCcCCCcH
Confidence            555554421  112222333444444433    222211                  13567888887731       22


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                      .....+.+.+...++.+..++.                         ..+.|||++.+    ++.++.++.|.++|+
T Consensus       391 ~~~~~l~~~~~~~Gvlv~~~~~-------------------------~~~~lrl~p~l~~t~~~id~~l~~l~~~l~  442 (451)
T PRK06918        391 TLTANICKEANKRGLLLLSAGT-------------------------YGNVIRVLMPLVITDEQLEEGLTIIEESLQ  442 (451)
T ss_pred             HHHHHHHHHHHHCCeEEeecCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence            3456677666655654433211                         13679999865    345556666666664

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.51  E-value=1.3e-11  Score=133.11  Aligned_cols=234  Identities=13%  Similarity=0.087  Sum_probs=140.9

Q ss_pred             CCchhHHHHHHHHHhhhCC----CcEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcc----c--C
Q 009523          198 YGNPTTVVVEEKMSALEGA----ESTVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP----K--M  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga----~~~i~~-sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~----~--~  264 (532)
                      +.++...+|.++|+++.+.    ...+++ +||++|+..+++...  ....+||+....|++..........    +  +
T Consensus        79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~  158 (442)
T TIGR00709        79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV  158 (442)
T ss_pred             cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence            5778888999999998753    244554 799999999987442  2335788888889885432211111    0  0


Q ss_pred             C---cEEEEeCCCC-------------H----HHHHHhhc-----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009523          265 G---ITATVIDPAD-------------M----EGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  315 (532)
Q Consensus       265 G---v~v~~vd~~d-------------l----e~Le~al~-----~~~tklV~lesP~NptG~v~d----l~~I~~la~~  315 (532)
                      +   ..+.+++..+             .    +.+++.+.     ..++.+|++|.+.+..|.+.+    +++|.++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~  238 (442)
T TIGR00709       159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK  238 (442)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            0   1122222111             1    12334442     126899999998877776653    7899999999


Q ss_pred             CCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHH
Q 009523          316 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  389 (532)
Q Consensus       316 ~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l  389 (532)
                      ||+++|.||++...      +.......-.|+++  ++|.+++ | ...|+++++++ ++.+...........+|..+..
T Consensus       239 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G-~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aa  313 (442)
T TIGR00709       239 HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-G-LPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVT  313 (442)
T ss_pred             cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-C-cccEEEEEchH-HhccCCCcCCCCCCcCHHHHHH
Confidence            99999999995432      11122334568888  8999997 4 45677777776 4433211111112246777777


Q ss_pred             HHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          390 IIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       390 ~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      ++..++.+..  -.++..+...++.+.|++    +|.+..                  .+|.|.|+.+++.
T Consensus       314 a~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~------------------vrG~Gl~~~ie~~  366 (442)
T TIGR00709       314 GTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGN------------------VRGRGLMQGIMIV  366 (442)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeee------------------eeccceEEEEEEc
Confidence            7777766532  122333344444444443    232222                  3578899999995

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.51  E-value=8.8e-12  Score=134.21  Aligned_cols=283  Identities=13%  Similarity=0.098  Sum_probs=170.7

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc-----c----
Q 009523          197 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----P----  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l-----~----  262 (532)
                      .+.++...+|.++|+++.+   .+.+++++||++|+..+++...  ...++|+.....|+|........-     .    
T Consensus        93 ~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~  172 (441)
T PRK05769         93 DFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGF  172 (441)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCC
Confidence            4667888899999999875   2578888999999999987432  234678888888888432211110     0    


Q ss_pred             -cCCcEEEEeCC----------CC--------HHHHHH-hhc----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          263 -KMGITATVIDP----------AD--------MEGLEA-ALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       263 -~~Gv~v~~vd~----------~d--------le~Le~-al~----~~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                       ...-.+..++.          .+        ++.+++ .++    ..++.+|++|......|.+.|    +++|.++|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~  252 (441)
T PRK05769        173 FPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLAD  252 (441)
T ss_pred             CCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence             00011222221          11        233555 222    236999999999888899888    999999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHH
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNA  386 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~  386 (532)
                      +||+++|+||++...      +.........|+++  ++|.++++  ...|++++++++.+.+..   ..+.+  .+|..
T Consensus       253 ~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~G--~p~gav~~~~~i~~~~~~---~~~~T~~g~p~~  325 (441)
T PRK05769        253 KYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAGG--LPLGAVIGRAELMFLPPG---SHANTFGGNPVA  325 (441)
T ss_pred             HcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccCC--cccEEEEEehhhhhcCCC---CCCCCCCcCHHH
Confidence            999999999996531      11122223458886  78999854  457788888877643321   12222  25666


Q ss_pred             HHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----
Q 009523          387 AYLIIRGMKTLHL-RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----  456 (532)
Q Consensus       387 a~l~l~~l~tl~~-r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----  456 (532)
                      +..++..++.+.. .+++..+..+++.+.|++    ++.+.                  ..+|.|.++.+++..+     
T Consensus       326 ~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~------------------~vrg~G~~~~i~~~~~~~~~~  387 (441)
T PRK05769        326 AAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIG------------------DVRGLGLMIGVELVKDRKEPD  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee------------------eeecceEEEEEEeccCCcccc
Confidence            6666666665542 223333444555555543    22211                  2256788999999532     


Q ss_pred             HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          457 LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       457 ~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      ......+.+.+...++-+..          .                 ..+.|||+..+    ++.+.+++.|+++|.+
T Consensus       388 ~~~~~~~~~~~~~~Gil~~~----------~-----------------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        388 PKLRDKVLYEAFKRGLLLLG----------A-----------------GKSAIRIIPPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             HHHHHHHHHHHHhCCcEEec----------C-----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            12344555555443433211          0                 13568888765    4556666666666654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.51  E-value=2.9e-12  Score=147.65  Aligned_cols=159  Identities=19%  Similarity=0.263  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccCC--CEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          203 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAG--GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l~~G--d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      ..+++..++++.|.+  ++-++.+++++.+++++++ +++|  |+|++++..|+.+...+...++..|++++.++..+.+
T Consensus       150 l~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~  229 (993)
T PLN02414        150 LLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD  229 (993)
T ss_pred             HHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc
Confidence            455789999999974  5778888888888777666 4544  7899999999999888877788899999998764322


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-Ccc-cccccCCcEEEECCcccc-----
Q 009523          278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQ-KALSLGADLVLHSATKFI-----  350 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~-~~l~~gaDivv~S~sK~l-----  350 (532)
                          ...+ .+..+++..|+ .+|.+.|+++|+++||++|+++++ .+.... ... .|-++|+|+++.+.+||.     
T Consensus       230 ----~~~~-~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        230 ----YSSG-DVCGVLVQYPA-TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             ----cccC-ceEEEEEecCC-CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCC
Confidence                1222 46666676665 589999999999999999999999 443221 122 477899999999999998     


Q ss_pred             CCCCCcEEEEEEeChHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQI  371 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l  371 (532)
                      ||+.   +|+++.++++.+.+
T Consensus       303 GGP~---aGflavr~~~~r~~  320 (993)
T PLN02414        303 GGPH---AAFLATSQEYKRLM  320 (993)
T ss_pred             CCCC---eeEEEECHHHHhhC
Confidence            4443   78999888765533

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.2e-13  Score=141.94  Aligned_cols=211  Identities=20%  Similarity=0.241  Sum_probs=167.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .....++|+.+|++.|.+++++|+-|-..+.+.+.+++.||.-|+.....|.+..    .-++.-|..++....+|+.+|
T Consensus       181 ~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~L  256 (519)
T KOG1357|consen  181 TEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGL  256 (519)
T ss_pred             HHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHH
Confidence            3567889999999999999999999999999999999999999999888887643    345666888998999999999


Q ss_pred             HHhhcCC------------CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc----------cccccc
Q 009523          280 EAALNNN------------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----------QKALSL  337 (532)
Q Consensus       280 e~al~~~------------~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~----------~~~l~~  337 (532)
                      |+.|++.            +.-+|++|.....-|.+.++.++.++++++..+++.||++..+..          ..+...
T Consensus       257 Er~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~  336 (519)
T KOG1357|consen  257 ERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPE  336 (519)
T ss_pred             HHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCch
Confidence            9988641            334788889999999999999999999999999999999654321          112234


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH--hhhcCCCccHHHHHHHHHhHHHH---------HHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGALNPNAAYLIIRGMKTL---------HLRVQQQNS  406 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~--~~~~G~~~~~~~a~l~l~~l~tl---------~~r~~~~~~  406 (532)
                      .+||+..+++|.+|+.    ||++.+++++++.++..  ....+..++|..+...+.+++.+         .+++++..+
T Consensus       337 dvDImMGtftKSfga~----GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~  412 (519)
T KOG1357|consen  337 DVDIMMGTFTKSFGAA----GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAE  412 (519)
T ss_pred             hheeecceehhhcccc----cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHh
Confidence            5789999999999965    69999999999988753  23456667777777767776654         356677778


Q ss_pred             HHHHHHHHHHhC
Q 009523          407 TALRMAKILEAH  418 (532)
Q Consensus       407 ~a~~la~~L~~~  418 (532)
                      |...+...|+..
T Consensus       413 ns~yfr~~l~~~  424 (519)
T KOG1357|consen  413 NSRYFRWELQKM  424 (519)
T ss_pred             hhHHHHHhhhcC
Confidence            887777776654

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.50  E-value=4.2e-12  Score=138.70  Aligned_cols=203  Identities=17%  Similarity=0.159  Sum_probs=132.8

Q ss_pred             EEEeCCHHHHHHHHHHHh----cc----------------------CCCEEEEcCCCCcchHHHHHHhcccCCc---EEE
Q 009523          219 TVIMASGMSASTVMLLAL----VP----------------------AGGHIVTTTDCYRKTRIFIETVLPKMGI---TAT  269 (532)
Q Consensus       219 ~i~~sSG~~Ai~~al~al----l~----------------------~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv---~v~  269 (532)
                      .+++++|++|+..++.+.    ++                      ++..|++++..|.+.....    ...|+   .++
T Consensus       162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa----~~lglg~~~v~  237 (522)
T TIGR03799       162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAA----DVLGIGRDNLI  237 (522)
T ss_pred             eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHH----HHcCCCcccEE
Confidence            678889999888776542    11                      2357999999998865433    33344   455


Q ss_pred             EeCC-----CCHHHHHHhhcC---CCeeEEEEe--CCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc-----
Q 009523          270 VIDP-----ADMEGLEAALNN---NNVSLFFTE--SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----  334 (532)
Q Consensus       270 ~vd~-----~dle~Le~al~~---~~tklV~le--sP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~-----  334 (532)
                      .++.     .|+++|+++|++   .+++.+++.  ..++.+|.+.|+++|+++|+++|++++||.+|+......+     
T Consensus       238 ~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~  317 (522)
T TIGR03799       238 AIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL  317 (522)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH
Confidence            4443     289999998852   134544443  5567899999999999999999999999999886533222     


Q ss_pred             c-c-cCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHH---Hhh-----------hcCCCcc-HHHHHHHHHhH--
Q 009523          335 L-S-LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRN---LHH-----------VLGGALN-PNAAYLIIRGM--  394 (532)
Q Consensus       335 l-~-~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~---~~~-----------~~G~~~~-~~~a~l~l~~l--  394 (532)
                      + . .++|.++.|.||+++++-+  .|+++.+ +.+.+.+..   +..           .-|+... ....|.+++.+  
T Consensus       318 l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~  395 (522)
T TIGR03799       318 LKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGR  395 (522)
T ss_pred             hcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhH
Confidence            1 2 2689999999997766642  5666554 455444332   100           0111111 22345554433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCC
Q 009523          395 KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  427 (532)
Q Consensus       395 ~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~P  427 (532)
                      +.+...+++..+.++++.+.|++.|+++.+..|
T Consensus       396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p  428 (522)
T TIGR03799       396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEP  428 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence            345666777888999999999999887655444

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.50  E-value=9.7e-13  Score=146.49  Aligned_cols=176  Identities=16%  Similarity=0.161  Sum_probs=132.6

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +.....+.++..|+++|+++..++.+|+ .+|.+++++++++||.|++.+++|.+.+..   .+...|+..+++.+.   
T Consensus       172 ~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~~n~  248 (720)
T PRK13578        172 HEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETARNP  248 (720)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeeccccc
Confidence            4455778899999999999999999998 889999999999999999999999986642   234457777776421   


Q ss_pred             -------C-----HHHHHHhhcCC--------C-eeEEEEeCCCCCCCcccCHHHHHHH-HHhCCCEEEEECCCCCCCcc
Q 009523          275 -------D-----MEGLEAALNNN--------N-VSLFFTESPTNPFLRCVDVKLVSDL-CHKKGAIVCIDGTFATPLNQ  332 (532)
Q Consensus       275 -------d-----le~Le~al~~~--------~-tklV~lesP~NptG~v~dl~~I~~l-a~~~gi~lIvDet~a~~~~~  332 (532)
                             +     .+.|+++|+++        + .+++++.+|+ ..|.+.|+++|+++ +|.++ +|++||+|+..+.+
T Consensus       249 ~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F  326 (720)
T PRK13578        249 FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQF  326 (720)
T ss_pred             cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhhcc
Confidence                   3     45588888653        1 5899998887 78999999999998 68888 99999998765433


Q ss_pred             cc---------cccCCc----EEEECCccccCCCCCcEEEEEEeChHHH---------HHHHHHhhhcCCC
Q 009523          333 KA---------LSLGAD----LVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGA  381 (532)
Q Consensus       333 ~~---------l~~gaD----ivv~S~sK~lgg~gd~~gG~lv~~~~li---------~~l~~~~~~~G~~  381 (532)
                      .+         ++.|+|    +++.|.||.+++.+  .+.++-.+...+         ++++.....+.++
T Consensus       327 ~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qST  395 (720)
T PRK13578        327 IPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNHIKGQARYCPHKRLNNAFMLHAST  395 (720)
T ss_pred             CcccccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcccccccccCCHHHHHHHHHHHcCC
Confidence            22         467999    99999999999775  455554443222         4565555555443

>PLN02263 serine decarboxylase

Probab=99.49  E-value=2.1e-11  Score=130.45  Aligned_cols=229  Identities=16%  Similarity=0.128  Sum_probs=157.2

Q ss_pred             CCCCCCCC---chhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcc
Q 009523          192 SFEYGRYG---NPTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       192 ~~~Y~R~~---~p~~~~Le~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      .+.++-|+   ...-.++-+.+++++|.+    ..+++++|++++..++.+.-.  +...+++++..|.+..    ..+.
T Consensus       121 p~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~----KAa~  196 (470)
T PLN02263        121 PFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAAR  196 (470)
T ss_pred             ccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH----HHHH
Confidence            45555442   223334557778888863    268899999999888776532  3447888999998755    4455


Q ss_pred             cCCcEEEEeCCC-----CHHHHHHhhcCCC--eeEEEEeCCCCCCCcccCHHHHHHHHHhCCC-----EEEEECCCCCCC
Q 009523          263 KMGITATVIDPA-----DMEGLEAALNNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGA-----IVCIDGTFATPL  330 (532)
Q Consensus       263 ~~Gv~v~~vd~~-----dle~Le~al~~~~--tklV~lesP~NptG~v~dl~~I~~la~~~gi-----~lIvDet~a~~~  330 (532)
                      .+|++++.++.+     |+++|+++|.++.  +-+|+....+-++|.+-|+++|.++|+++|+     +++||++++..+
T Consensus       197 llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~  276 (470)
T PLN02263        197 MYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLM  276 (470)
T ss_pred             hcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence            567777777643     8999999887532  5677777788899999999999999999997     999999987642


Q ss_pred             c-c--c--c--cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH---h-----hhcCCCc--cHHHHHHHHH-
Q 009523          331 N-Q--K--A--LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H-----HVLGGAL--NPNAAYLIIR-  392 (532)
Q Consensus       331 ~-~--~--~--l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~---~-----~~~G~~~--~~~~a~l~l~-  392 (532)
                      . +  .  .  ...++|-+..+.||+++.+-  ..|+++.+++.++.+...   .     ...|+..  .+...|..++ 
T Consensus       277 lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~--~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~  354 (470)
T PLN02263        277 MPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR  354 (470)
T ss_pred             hhhcccccccCCCcCccEEEECCccccCCCc--CEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH
Confidence            2 1  1  1  12248999999999998765  367777766554333211   0     1223322  2456676655 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCC
Q 009523          393 -GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP  427 (532)
Q Consensus       393 -~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~P  427 (532)
                       |.+.+..++++..++++++.+.|++. ++..+.-|
T Consensus       355 ~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p  389 (470)
T PLN02263        355 KGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNE  389 (470)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCC
Confidence             55678888899999999999999887 34344333

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.49  E-value=1.8e-11  Score=132.47  Aligned_cols=285  Identities=13%  Similarity=0.107  Sum_probs=168.0

Q ss_pred             CCCchhHHHHHHHHHhhhCCC-----cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc----c--
Q 009523          197 RYGNPTTVVVEEKMSALEGAE-----STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----P--  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~-----~~i~~-sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l----~--  262 (532)
                      .+.++...+|.++|.++...+     ..+++ +||++|+..+++...  ....+||.....|++.......+-    .  
T Consensus       102 ~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~  181 (464)
T PRK06938        102 DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKK  181 (464)
T ss_pred             ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccc
Confidence            456788888988898876432     35565 699999999987542  223578888888888432211110    0  


Q ss_pred             cCC---cEEEEeCCC-----------------CHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC----HHHHHHHH
Q 009523          263 KMG---ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       263 ~~G---v~v~~vd~~-----------------dle~Le~al~~-----~~tklV~lesP~NptG~v~d----l~~I~~la  313 (532)
                      .++   ..+.+++..                 +++.+++.+++     .++.+|++|......|.+.+    ++++.++|
T Consensus       182 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc  261 (464)
T PRK06938        182 PLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRIT  261 (464)
T ss_pred             cCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            000   112233211                 25677777753     15899999988876677665    78999999


Q ss_pred             HhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHH
Q 009523          314 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPN  385 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~  385 (532)
                      ++||+++|.||++...      +.+.....-+||++  ++|.++|+  ...|++++++++ +.+...  .++++  .+|.
T Consensus       262 ~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglggG--~PlsAv~~~~~~-~~~~~~--~~~~T~~gnpl  334 (464)
T PRK06938        262 EEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIGGS--LPLAVVVYREWL-DTWQPG--AHAGTFRGNQM  334 (464)
T ss_pred             HHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eeccccCC--CceEEEeehhHh-hccCCC--CCCCCCCcCHH
Confidence            9999999999995432      12233344579998  78999864  456667777664 433211  12222  3577


Q ss_pred             HHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---
Q 009523          386 AAYLIIRGMKTLHLR--VQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---  456 (532)
Q Consensus       386 ~a~l~l~~l~tl~~r--~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---  456 (532)
                      .+.+++..++.+...  +++..+..+++.+.|++    +|.+..                  .+|.|.|+.+++..+   
T Consensus       335 a~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~------------------VrG~Glm~gie~~~~~~~  396 (464)
T PRK06938        335 AMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD------------------VRGRGLMLGVEIVDPQGE  396 (464)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee------------------eeccceEEEEEeccCccc
Confidence            777777677665321  12222333334444432    332222                  256788999999532   


Q ss_pred             ----------HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHH
Q 009523          457 ----------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----GVEDFEDLK  522 (532)
Q Consensus       457 ----------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G~ed~~dli  522 (532)
                                ......+...+...++-+..++                         ...+.|||..    .-++.+.++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-------------------------~~~~~l~~~Ppl~it~~eid~~~  451 (464)
T PRK06938        397 PDALGHPPANGELASLIQRECLRRGLILELGG-------------------------RHGSVVRFLPPLIITAEQIDEVA  451 (464)
T ss_pred             ccccccCCccHHHHHHHHHHHHHCCeEEeecC-------------------------CCCCEEEEECCCccCHHHHHHHH
Confidence                      1223445555444443332211                         1135677763    346667777


Q ss_pred             HHHHHHHhh
Q 009523          523 ADVLQALHA  531 (532)
Q Consensus       523 ~dL~~AL~~  531 (532)
                      +.|+++|..
T Consensus       452 ~~l~~~l~~  460 (464)
T PRK06938        452 EIFAEAVAA  460 (464)
T ss_pred             HHHHHHHHH
Confidence            777777754

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.49  E-value=5.6e-12  Score=136.59  Aligned_cols=290  Identities=12%  Similarity=0.113  Sum_probs=169.8

Q ss_pred             CCCchhHHHHHHHHHhhhCC-------CcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHHHHHhc
Q 009523          197 RYGNPTTVVVEEKMSALEGA-------ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga-------~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~~~~~l  261 (532)
                      .+.++...+|.++|+++...       +.+++++||++|+..+++....       + ..+||.....|+|........-
T Consensus       103 ~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~  182 (472)
T PRK08742        103 GFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVG  182 (472)
T ss_pred             ccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhcc
Confidence            35677888899999987642       4688889999999999875421       2 2578888988988431111110


Q ss_pred             ---------ccCCcEEEEeCCC-----------------CHHHHHHhhc--CCCeeEEEEeC-CCCCCCcccC----HHH
Q 009523          262 ---------PKMGITATVIDPA-----------------DMEGLEAALN--NNNVSLFFTES-PTNPFLRCVD----VKL  308 (532)
Q Consensus       262 ---------~~~Gv~v~~vd~~-----------------dle~Le~al~--~~~tklV~les-P~NptG~v~d----l~~  308 (532)
                               ...-..+.+++..                 +++.+++.+.  ..++.+|++|. ..+..|.+.+    +++
T Consensus       183 ~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~  262 (472)
T PRK08742        183 DIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRR  262 (472)
T ss_pred             CCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHH
Confidence                     0000012222221                 2466677764  23699999998 4666676554    789


Q ss_pred             HHHHHHhCCCEEEEECCCCC----C--CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH----hhhc
Q 009523          309 VSDLCHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVL  378 (532)
Q Consensus       309 I~~la~~~gi~lIvDet~a~----~--~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~----~~~~  378 (532)
                      +.++|++||+++|.||++..    +  +.......-.||++  +.|.++|+- ...|.+++++++.+.+...    ....
T Consensus       263 lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~gG~-~Plaav~~~~ei~~~~~~~~~~~~~~h  339 (472)
T PRK08742        263 ARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLTGGF-LPLSAVLATQQLYDAFLDDSRERAFLH  339 (472)
T ss_pred             HHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEE--EcccccCCC-CCcceeeccHHHHHHhhccCccCccCc
Confidence            99999999999999999532    1  11333344579998  789998652 2356777888887766421    0112


Q ss_pred             CCC--ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          379 GGA--LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       379 G~~--~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p-~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      +.+  .+|..+.+++..++.+..  +...++++++.++|++.- .+.  .+|.+          ...+|.|.|+.|++..
T Consensus       340 ~~T~~gnpl~~Aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~~~~~~--~~~~i----------~dvRG~Gl~~giel~~  405 (472)
T PRK08742        340 SHSYTGNPLACAAALATLDIFAD--DDVIARNQPTAARMTQLAAQIG--EHPHV----------ADVRQAGMVVAFELTR  405 (472)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHh--cCCCe----------eeEeccceEEEEEecc
Confidence            322  367777776666665532  122334444433333210 000  01211          1236788999999953


Q ss_pred             CH----------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHH
Q 009523          456 DL----------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDL  521 (532)
Q Consensus       456 ~~----------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dl  521 (532)
                      +.          .....+.+.+...++-+..                            ..+.|||.-.    .++.+++
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~----------------------------~g~vi~~~PpL~it~~ei~~~  457 (472)
T PRK08742        406 GGNKRTPFPPAARVGLHAYRAALARGVVLRP----------------------------LGDVLYWMPPYCVDEAQLALL  457 (472)
T ss_pred             CccccccCCchhHHHHHHHHHHHHCCeEEEe----------------------------cCCEEEEECCCCCCHHHHHHH
Confidence            21          1123444444333432211                            0245666654    3667778


Q ss_pred             HHHHHHHHhh
Q 009523          522 KADVLQALHA  531 (532)
Q Consensus       522 i~dL~~AL~~  531 (532)
                      ++.|+++|++
T Consensus       458 ~~~l~~~l~~  467 (472)
T PRK08742        458 ADTTRHAIDE  467 (472)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.49  E-value=3.5e-11  Score=129.97  Aligned_cols=284  Identities=15%  Similarity=0.123  Sum_probs=170.4

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc-----ccCC----
Q 009523          199 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----PKMG----  265 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l-----~~~G----  265 (532)
                      .++...+|.++|+++.+.  +.+.+++||++|+..+++...  ....+||.....|+|.......+.     .+.+    
T Consensus        94 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~  173 (457)
T PRK05639         94 HSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPL  173 (457)
T ss_pred             CCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCC
Confidence            457777899999998754  568899999999999987542  234578888888888432111110     0011    


Q ss_pred             -cEEEEeCCC-------------CH--------HHHHHhh-----cCCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          266 -ITATVIDPA-------------DM--------EGLEAAL-----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       266 -v~v~~vd~~-------------dl--------e~Le~al-----~~~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                       -.+.+++..             +.        +.+++.+     ...++.+|++|......|.+.|    +++|.++|+
T Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~  253 (457)
T PRK05639        174 MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLD  253 (457)
T ss_pred             CCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence             112333321             12        2355544     1336999999998877787665    789999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHH
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY  388 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~  388 (532)
                      +||+++|+||++...      +.......-+|+++  ++|.++++  ...|++++++++.+.... ........+|..+.
T Consensus       254 ~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG--~pi~av~~~~~i~~~~~~-~~~~T~~g~p~~~a  328 (457)
T PRK05639        254 EHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVASG--MGLSGVIGRKELMDLTSG-SALLTPAANPVISA  328 (457)
T ss_pred             HcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcCC--CcceeEEehHHHHhhcCC-CcccCCCcCHHHHH
Confidence            999999999996421      11222344578888  89999864  245778888888772211 11112234677766


Q ss_pred             HHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----H
Q 009523          389 LIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----L  457 (532)
Q Consensus       389 l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----~  457 (532)
                      .++..++.+..  .+++..+..+++.+.|++    ++.+.                  +.+|.|.|+.+++..+     .
T Consensus       329 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~------------------~VrG~Gl~~gve~~~~~~~~~~  390 (457)
T PRK05639        329 AAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIG------------------DVRGKGLMIGVEIVKENGKPDP  390 (457)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEE------------------eeccceeEEEEEEecCCCCCCH
Confidence            66666665532  123333444455555543    22222                  2257888999998431     2


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                      +....+.+.+...++-+...                         |...+.|||+..+    ++.+++++.|+++|+
T Consensus       391 ~~~~~~~~~~~~~Gv~~~~~-------------------------g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~  442 (457)
T PRK05639        391 ELTGKICWRAFELGLILPSY-------------------------GMFGNVIRITPPLVITKEIAEKGLEIMERAIK  442 (457)
T ss_pred             HHHHHHHHHHHhCCeEEeec-------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence            23455665555445433211                         1124678887765    455666666666654

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.49  E-value=4.2e-12  Score=124.62  Aligned_cols=259  Identities=20%  Similarity=0.295  Sum_probs=172.6

Q ss_pred             cCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcCCC-CcchHHHH------HH
Q 009523          190 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTTDC-YRKTRIFI------ET  259 (532)
Q Consensus       190 ~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~---~sSG~~Ai~~al~all~~Gd~VIv~~~~-y~~t~~~~------~~  259 (532)
                      +.+|.|...+   ++.|++-.|+.+|++.+++   +-||+.||..+|..+++|||+++.-... |....+.+      ..
T Consensus        57 stGYGydD~G---RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~g  133 (416)
T COG4100          57 STGYGYDDLG---RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQG  133 (416)
T ss_pred             CCCCCccccc---hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcc
Confidence            4566665544   5678888999999987654   6799999999999999999998765433 33222111      01


Q ss_pred             hcccCCcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCC----CCCCCcccCHHHHHHHHHhC--CCEEEEECCCCC
Q 009523          260 VLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESP----TNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFAT  328 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP----~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~  328 (532)
                      .++.+|+...-++..     |.+.++.++++ +||+|-+.--    .-|...+.+++++.++.++-  ++++.|||+|+.
T Consensus       134 SL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE  212 (416)
T COG4100         134 SLKDFGIKYKAVPLTADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE  212 (416)
T ss_pred             cHHHhCcceeecccccCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence            355678888777643     89999999998 7999999543    24677788889999988874  799999999998


Q ss_pred             CCc-ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH------hhhcCCCccHHHHHHHHHhHHHHHHHH
Q 009523          329 PLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL------HHVLGGALNPNAAYLIIRGMKTLHLRV  401 (532)
Q Consensus       329 ~~~-~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~------~~~~G~~~~~~~a~l~l~~l~tl~~r~  401 (532)
                      ++. ..|...|+|++..|+-|.-||+--..||++.++.++++...-.      .+..|.++..  ...+.+++--.+.-.
T Consensus       213 FvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG~e~Gat~~~--l~~myqGlFlAPhvv  290 (416)
T COG4100         213 FVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIGREGGATLYS--LREMYQGLFLAPHVV  290 (416)
T ss_pred             hhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCCccccccccHHH--HHHHHhhhccchHHH
Confidence            764 5788899999999999999887555689999999999875321      1122222221  112233333223333


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI  469 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~  469 (532)
                      .+..+-+...+.+|++.      .+|.   .|.+.-     .+.--+-++++. +.+....|+.+++.
T Consensus       291 ~qa~Kga~fta~~le~l------g~~~---~P~~~~-----kRtDlIQavkf~-~~eKmIaFcqaiQ~  343 (416)
T COG4100         291 SQAVKGAHFTARFLEKL------GFPV---NPKYDA-----KRTDLIQAVKFG-SKEKMIAFCQAIQA  343 (416)
T ss_pred             HHHhhhhHHHHHHHHHc------CCCC---CCcccc-----cccchhhheecC-CHHHHHHHHHHHhh
Confidence            44445555566677654      2222   221110     011124467775 45777888888753

>PRK07480 putative aminotransferase; Validated

Probab=99.49  E-value=1.1e-11  Score=133.80  Aligned_cols=240  Identities=16%  Similarity=0.197  Sum_probs=147.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHh------
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV------  260 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~------  260 (532)
                      .+.++...+|.++|+++.+.  +.+++++||++|+..+++....       +| .+||.....|++....-...      
T Consensus        90 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~  169 (456)
T PRK07480         90 KTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYM  169 (456)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhh
Confidence            45788889999999998853  5788999999999999875421       23 46888888888842110000      


Q ss_pred             cccCCc---EEEEeCCC---------------C--HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHH
Q 009523          261 LPKMGI---TATVIDPA---------------D--MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       261 l~~~Gv---~v~~vd~~---------------d--le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la  313 (532)
                      -...+.   .+..++..               +  ++.|++.+.   ..++.+|++|......|.+.+    +++|.++|
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc  249 (456)
T PRK07480        170 HEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRIC  249 (456)
T ss_pred             hcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            000110   11222210               1  256655452   136899999999877788776    88999999


Q ss_pred             HhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH-Hh-hhcCC--Ccc
Q 009523          314 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LH-HVLGG--ALN  383 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~-~~-~~~G~--~~~  383 (532)
                      ++||+++|+||++...      +.......-.|+++  ++|.++++- ...|.+++++++.+.+.. .. ...+.  ..+
T Consensus       250 ~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gn  326 (456)
T PRK07480        250 RKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSGY-IPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGH  326 (456)
T ss_pred             HHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccCC-ccceEEEEcHHHHHHHhcCCCCcccCCCCCcC
Confidence            9999999999995321      11223334568887  799998642 235667778888777631 11 11222  246


Q ss_pred             HHHHHHHHHhHHHHHH--HHHHH-HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          384 PNAAYLIIRGMKTLHL--RVQQQ-NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       384 ~~~a~l~l~~l~tl~~--r~~~~-~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      |..+..++..|+.+..  .+++. .+..+++.+.|++..     .+|.+          .+.+|.|.|+.+++.
T Consensus       327 pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~-----~~~~i----------~~vrG~Glm~gie~~  385 (456)
T PRK07480        327 PVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELA-----DHPLV----------GEVRGVGLVGAIELV  385 (456)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhh-----cCCCe----------eeEEeecceEEEEEe
Confidence            7777777777766542  12222 233455555554321     12211          123578899999995

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.49  E-value=7.6e-12  Score=131.82  Aligned_cols=291  Identities=17%  Similarity=0.172  Sum_probs=180.7

Q ss_pred             CCCCCchhHHHHHHHHHhhhC-C--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCCcchH---------
Q 009523          195 YGRYGNPTTVVVEEKMSALEG-A--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTR---------  254 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~g-a--~~~i~~sSG~~Ai~~al~all-------~~G-d~VIv~~~~y~~t~---------  254 (532)
                      ++-...| ..+|.++|+++.+ .  +.+++.+||++|++++++..+       +|. .++|.-...|++.-         
T Consensus        82 ~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~  160 (449)
T COG0161          82 GGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGP  160 (449)
T ss_pred             cccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCc
Confidence            4445567 8899999999987 3  578888999999999997543       233 34888888998731         


Q ss_pred             -HHHHHhcccCCcEEEEeCC-----------------CCHHHHHHhhcC---CCeeEEEEeCCCCC-CCcccC----HHH
Q 009523          255 -IFIETVLPKMGITATVIDP-----------------ADMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKL  308 (532)
Q Consensus       255 -~~~~~~l~~~Gv~v~~vd~-----------------~dle~Le~al~~---~~tklV~lesP~Np-tG~v~d----l~~  308 (532)
                       ..........-..+.+++.                 ...++|++.+..   +++.++++|....- .|.+.|    +++
T Consensus       161 ~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~  240 (449)
T COG0161         161 VALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKR  240 (449)
T ss_pred             hhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHH
Confidence             1111111111111112211                 114567777754   46899999998876 676665    889


Q ss_pred             HHHHHHhCCCEEEEECCCC------CCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-h----hh
Q 009523          309 VSDLCHKKGAIVCIDGTFA------TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-H----HV  377 (532)
Q Consensus       309 I~~la~~~gi~lIvDet~a------~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-~----~~  377 (532)
                      +.++|++|||++|.||+..      ..+.......-.||++  ++|.+.++.-. .|.++.++++.+.+..- .    ..
T Consensus       241 vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY~P-l~a~l~~~~I~~~~~~~~~~~f~HG  317 (449)
T COG0161         241 VREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGYLP-LSAVLTSDRIYEAFSDGDAGAFMHG  317 (449)
T ss_pred             HHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccchh-hHhHhhhHHHHHHHhcccCCeeccC
Confidence            9999999999999999932      1222333344578988  88999877643 44555667777776542 1    11


Q ss_pred             cCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEE
Q 009523          378 LGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF  451 (532)
Q Consensus       378 ~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf  451 (532)
                      +.-+-+|.+|..++..++.+..  .+++..+...++.+.|++    +|.|..|                  ++.|.|..+
T Consensus       318 ~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV------------------R~~Gli~~i  379 (449)
T COG0161         318 HTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDV------------------RGLGLIGAI  379 (449)
T ss_pred             CccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEe------------------eccceEEEE
Confidence            2234578899888888776542  223333444455555543    2344333                  556778889


Q ss_pred             EEcCCHH--------HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHH
Q 009523          452 EVDGDLT--------ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKA  523 (532)
Q Consensus       452 ~l~g~~~--------~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~  523 (532)
                      |+..+..        ...++.......|+-+...+. .+...|.                       +.+..|+.+++++
T Consensus       380 Elv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~-~i~~~PP-----------------------liit~~eid~l~~  435 (449)
T COG0161         380 ELVADKATKTPFEARVGARVRAAALERGLLIRPLGD-VIYLMPP-----------------------LIITREEIDELVD  435 (449)
T ss_pred             EEecccccccchhhhHHHHHHHHHHHCCeEEeecCC-EEEEcCC-----------------------ccCCHHHHHHHHH
Confidence            9864322        244555555445555553322 2222332                       4455678889999


Q ss_pred             HHHHHHhh
Q 009523          524 DVLQALHA  531 (532)
Q Consensus       524 dL~~AL~~  531 (532)
                      .+.++|+.
T Consensus       436 ~l~~al~~  443 (449)
T COG0161         436 ALREALDE  443 (449)
T ss_pred             HHHHHHHH
Confidence            99988874

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.49  E-value=1.7e-11  Score=121.08  Aligned_cols=212  Identities=19%  Similarity=0.211  Sum_probs=152.7

Q ss_pred             HHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----C
Q 009523          204 VVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----D  275 (532)
Q Consensus       204 ~~Le~~lA~l~ga~--~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----d  275 (532)
                      +++.+-+...+...  . -++-++|..+.+.++..++.|||.|++-...-.+.+  +...++++|++|..++.+     .
T Consensus        53 ~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~~~  130 (385)
T KOG2862|consen   53 DEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQAVP  130 (385)
T ss_pred             HHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccCcc
Confidence            34445555555532  2 345578889999999999999999887655433322  335688999999988643     6


Q ss_pred             HHHHHHhhcCCCeeEEEEeCCCCCCCcccC-HHHHHHHHHhCCCEEEEECCCCC-CCcccccccCCcEEEECCccccCCC
Q 009523          276 MEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIGGH  353 (532)
Q Consensus       276 le~Le~al~~~~tklV~lesP~NptG~v~d-l~~I~~la~~~gi~lIvDet~a~-~~~~~~l~~gaDivv~S~sK~lgg~  353 (532)
                      ++.+++.+.++++++|+++.--.-||.++| ++.+-++||+|+++++||.+..- ...+...++|+|+......|.+|++
T Consensus       131 le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP  210 (385)
T KOG2862|consen  131 LEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAP  210 (385)
T ss_pred             HHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCC
Confidence            899999999989999999988889999999 67788999999999999998432 3345566889999999999999988


Q ss_pred             CCcEEEEEEeChHHHHHHHHHhh--------------hcCC---------CccHH-----HHHHHHHhHHHHHHHHHHHH
Q 009523          354 NDVLAGSISGSGKLVTQIRNLHH--------------VLGG---------ALNPN-----AAYLIIRGMKTLHLRVQQQN  405 (532)
Q Consensus       354 gd~~gG~lv~~~~li~~l~~~~~--------------~~G~---------~~~~~-----~a~l~l~~l~tl~~r~~~~~  405 (532)
                      .+  .+.+..++...++++....              .+|.         +.+..     .+++.+-.-+.++.+.++|.
T Consensus       211 ~G--LsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~  288 (385)
T KOG2862|consen  211 AG--LSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHR  288 (385)
T ss_pred             CC--cceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            63  3567777777676653221              1111         11111     22232333345677888999


Q ss_pred             HHHHHHHHHHHhCC
Q 009523          406 STALRMAKILEAHP  419 (532)
Q Consensus       406 ~~a~~la~~L~~~p  419 (532)
                      ++++++...|+++.
T Consensus       289 e~s~~l~~~l~~~G  302 (385)
T KOG2862|consen  289 EMSKWLKLSLEALG  302 (385)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999888863

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.48  E-value=1.3e-11  Score=133.67  Aligned_cols=215  Identities=16%  Similarity=0.164  Sum_probs=141.1

Q ss_pred             CchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh----------cccCC
Q 009523          199 GNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV----------LPKMG  265 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~----------l~~~G  265 (532)
                      .++...+|.++|.+... .+.+.+++||++|+..+++...  ...++||.....|++....+...          ....|
T Consensus       137 ~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g  216 (474)
T PLN02482        137 PCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG  216 (474)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence            56667788888888775 4678899999999999987542  23367888888898853221100          00112


Q ss_pred             c------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC----
Q 009523          266 I------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----  329 (532)
Q Consensus       266 v------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~----  329 (532)
                      +      .+..++.+|++++++.++.  +++.+|++|...+..|.+.|    +++|.++|++||+++|+||++...    
T Consensus       217 ~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~  296 (474)
T PLN02482        217 VPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY  296 (474)
T ss_pred             CCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc
Confidence            1      2344566789999988853  25899999999888888876    568999999999999999996321    


Q ss_pred             -CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-hhcCCC--ccHHHHHHHHHhHHHHHH--HHHH
Q 009523          330 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGA--LNPNAAYLIIRGMKTLHL--RVQQ  403 (532)
Q Consensus       330 -~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-~~~G~~--~~~~~a~l~l~~l~tl~~--r~~~  403 (532)
                       ..+.......|+++  ++|.+|++  ...|.+++++++++.+.... ..++++  .+|..+.+++..++.+..  ..++
T Consensus       297 ~ga~~~~gv~PDi~t--~gK~lggG--~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~  372 (474)
T PLN02482        297 GGAQEYFGITPDLTT--LGKVIGGG--LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEY  372 (474)
T ss_pred             chHhHHhCCCCCEEE--ecchhhCC--CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHH
Confidence             11122233468865  79999864  34566688999888775311 112333  356666656666665532  3344


Q ss_pred             HHHHHHHHHHHHHh
Q 009523          404 QNSTALRMAKILEA  417 (532)
Q Consensus       404 ~~~~a~~la~~L~~  417 (532)
                      ..+..+++.+.|++
T Consensus       373 ~~~~g~~l~~~L~~  386 (474)
T PLN02482        373 LDKITKKLIQGILE  386 (474)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44555556555554

>PRK07036 hypothetical protein; Provisional

Probab=99.47  E-value=3.1e-11  Score=130.76  Aligned_cols=239  Identities=13%  Similarity=0.168  Sum_probs=147.7

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHHHHHhcc-----
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      ..++...+|.++|+++...  +.+++++||++|+..+++....       + ..+|+.-...|++........-.     
T Consensus        92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~  171 (466)
T PRK07036         92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADR  171 (466)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccc
Confidence            5678888899999988753  5688889999999999875321       2 25788888888884321111100     


Q ss_pred             -cCC---cEEEEeCCCC-----------------HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          263 -KMG---ITATVIDPAD-----------------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       263 -~~G---v~v~~vd~~d-----------------le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                       .++   ..+.+++..+                 ++.+++.+.   ..++.+|++|......|.+.|    +++|.++|+
T Consensus       172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~  251 (466)
T PRK07036        172 TEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR  251 (466)
T ss_pred             ccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence             000   1122222111                 234555553   236999999999877888877    899999999


Q ss_pred             hCCCEEEEECCCCCC------Cccc-ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH---h--hhcCC--
Q 009523          315 KKGAIVCIDGTFATP------LNQK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H--HVLGG--  380 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~-~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~---~--~~~G~--  380 (532)
                      +||+++|+||++...      +... ....-.||++  ++|.++++- +..|.+++++++.+.+...   .  ...+.  
T Consensus       252 ~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  328 (466)
T PRK07036        252 RYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTSGY-QPLGAVIISERLLDVISGPNAKGNVFTHGFTY  328 (466)
T ss_pred             HcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--EccccccCc-cccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence            999999999996321      1111 2344578887  789998641 2356777888888776521   0  11221  


Q ss_pred             CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          381 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      ..+|..+..++..++.+..  .+++..+..+++.+.|+..   .  .+|.+          ...+|.|.|+.+++.
T Consensus       329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l---~--~~~~v----------~~vrG~Gl~~~ve~~  389 (466)
T PRK07036        329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL---R--ELPLV----------GDVRGDHLMACVECV  389 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh---c--cCCCE----------EEEEeeceEEEEEEc
Confidence            2367777777777776642  2333344445555555431   1  12211          123678999999995

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.47  E-value=1.2e-11  Score=133.91  Aligned_cols=288  Identities=14%  Similarity=0.136  Sum_probs=172.6

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhcc-----
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      +.++...+|.++|+++...  +.+++++||++|+..+++....       +| .+||.-...|++.......+-.     
T Consensus        96 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~  175 (460)
T PRK06916         96 LANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFH  175 (460)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccc
Confidence            4677788899999998753  5788899999999999875431       33 5788889999884321111100     


Q ss_pred             -cCC---cEEEEeCC-----------------CCHHHHHHhhcC--CCeeEEEEeC-CCCCCCcccC----HHHHHHHHH
Q 009523          263 -KMG---ITATVIDP-----------------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       263 -~~G---v~v~~vd~-----------------~dle~Le~al~~--~~tklV~les-P~NptG~v~d----l~~I~~la~  314 (532)
                       .++   ..+..++.                 .+++++++.++.  +++.+|++|. +....|.+.+    +++|.++|+
T Consensus       176 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~  255 (460)
T PRK06916        176 QVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCT  255 (460)
T ss_pred             cccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHH
Confidence             000   01112211                 124566777742  3699999998 5766676654    789999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH----h-hhcCCC--
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----H-HVLGGA--  381 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~----~-~~~G~~--  381 (532)
                      ++|+++|+||++...      +.......-.|+++  +.|.++|+. +..|++++++++.+.+..-    . ...+.+  
T Consensus       256 ~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~-~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~  332 (460)
T PRK06916        256 KYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGGY-LPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYT  332 (460)
T ss_pred             HcCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcCc-cccceeeecHHHHHHhhccccccCccccCCCCC
Confidence            999999999995321      11223344578887  799998642 2467788888887765421    0 112222  


Q ss_pred             ccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--
Q 009523          382 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--  457 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--  457 (532)
                      .+|..+..++..++.+..  ..++..+..+++.+.|++..   .  +|.+          ...+|.|.|+.+++..+.  
T Consensus       333 gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~---~--~~~v----------~~vrG~Glm~giel~~~~~~  397 (460)
T PRK06916        333 GNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLF---A--LKHV----------GDIRQLGLMVGIELVKNKET  397 (460)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh---c--CCCe----------EEeecCCceeeEEeeccccc
Confidence            367777766666665532  23344444555555555421   1  2211          123678899999985321  


Q ss_pred             --------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHH
Q 009523          458 --------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKADV  525 (532)
Q Consensus       458 --------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~dL  525 (532)
                              .....+...+...++-+...                            .+.+||.    +..++.+.+++.|
T Consensus       398 ~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------g~~l~~~Ppl~it~~~id~~~~~l  449 (460)
T PRK06916        398 KEPFEWTERVGVQVCKRSRELGMLTRPL----------------------------GNTIVFMPPLASTIDELDEMLRIL  449 (460)
T ss_pred             ccCCCchhhHHHHHHHHHHHCCeEEEec----------------------------CCEEEEeCCcccCHHHHHHHHHHH
Confidence                    11234555554444332211                            2356665    3446677777777


Q ss_pred             HHHHhh
Q 009523          526 LQALHA  531 (532)
Q Consensus       526 ~~AL~~  531 (532)
                      +++|++
T Consensus       450 ~~~l~~  455 (460)
T PRK06916        450 YKAISD  455 (460)
T ss_pred             HHHHHh
Confidence            777764

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.47  E-value=1.9e-11  Score=131.11  Aligned_cols=216  Identities=13%  Similarity=0.169  Sum_probs=141.0

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-CC-CEEEEcCCCCcchHHH-HHH-hcc---------
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-AG-GHIVTTTDCYRKTRIF-IET-VLP---------  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-~G-d~VIv~~~~y~~t~~~-~~~-~l~---------  262 (532)
                      ..++...+|.++|.++.+.  +.+.+++||++|+..+++.... .| .+|+.-...|+|.... +.. .+.         
T Consensus        90 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~  169 (433)
T PRK00615         90 LTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTH  169 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCC
Confidence            4577788888999988754  4788899999999999875421 23 5788888888884211 100 000         


Q ss_pred             cC-----CcEEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC-C
Q 009523          263 KM-----GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-L  330 (532)
Q Consensus       263 ~~-----Gv~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~-~  330 (532)
                      ..     ......++.+|++++++.+..  .++.+|++|......|.+.|    +++|.++|++||+++|+||++... .
T Consensus       170 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~  249 (433)
T PRK00615        170 LVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRV  249 (433)
T ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            00     011223355688999988853  35889999999888888877    559999999999999999997321 1


Q ss_pred             c----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcCCC--ccHHHHHHHHHhHHHHHH--HH
Q 009523          331 N----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGA--LNPNAAYLIIRGMKTLHL--RV  401 (532)
Q Consensus       331 ~----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G~~--~~~~~a~l~l~~l~tl~~--r~  401 (532)
                      .    ........|+++  ++|.+|++  ..+|++++++++++.+..... ..+++  .+|..+..++..++.+..  .+
T Consensus       250 G~~ga~~~~gv~PDi~~--~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~  325 (433)
T PRK00615        250 AQGGAAAIYHVKPDITV--YGKILGGG--LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFY  325 (433)
T ss_pred             cHhHHHHhcCCCCCeEE--EcccccCC--cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHH
Confidence            1    122233568876  89999864  357889999998887753211 12222  467777777777765532  23


Q ss_pred             HHHHHHHHHHHHHHHh
Q 009523          402 QQQNSTALRMAKILEA  417 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~  417 (532)
                      ++..++.+++.+.|++
T Consensus       326 ~~~~~~g~~l~~~l~~  341 (433)
T PRK00615        326 TQLSTLEQNFLSPIEE  341 (433)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444445555444443

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.47  E-value=6.8e-12  Score=134.86  Aligned_cols=227  Identities=21%  Similarity=0.215  Sum_probs=153.2

Q ss_pred             HHHHHHHhhhCC-C--cEEEeCCHHHHHHHHHHHhcc-----C---CC------EEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          205 VVEEKMSALEGA-E--STVIMASGMSASTVMLLALVP-----A---GG------HIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       205 ~Le~~lA~l~ga-~--~~i~~sSG~~Ai~~al~all~-----~---Gd------~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      ++-..++++++. +  ...++++|++|+.+++.+...     .   +.      .|+++...|.+...    .+..+|++
T Consensus       105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~K----aa~~lG~~  180 (460)
T COG0076         105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEK----AARYLGLG  180 (460)
T ss_pred             HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHH----HHHHhCCC
Confidence            344566667776 3  368899999999887764411     1   11      69999988887553    44445555


Q ss_pred             EEEeC--C----CCHHHHHHhhcCCCeeE--EEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc--ccc---
Q 009523          268 ATVID--P----ADMEGLEAALNNNNVSL--FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKA---  334 (532)
Q Consensus       268 v~~vd--~----~dle~Le~al~~~~tkl--V~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~--~~~---  334 (532)
                      .+.++  .    .|+++|+++++++ +..  |+....+-++|.+-|+++|+++|++++++++||++++..+.  .++   
T Consensus       181 ~~~v~~~~~~~~id~~~l~~~i~~~-t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~  259 (460)
T COG0076         181 LRRVPTVPTDYRIDVDALEEAIDEN-TIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR  259 (460)
T ss_pred             ceeEEeccCccccCHHHHHHHHHhh-ccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccch
Confidence            54443  2    2899999999884 555  77778889999999999999999999999999999887532  111   


Q ss_pred             --cc-cCCcEEEECCccccCCCCCcEEEEEEeChH--HHHHHHHHhhhc-----------CCCc--cHHHHHHHHHhH--
Q 009523          335 --LS-LGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLHHVL-----------GGAL--NPNAAYLIIRGM--  394 (532)
Q Consensus       335 --l~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~--li~~l~~~~~~~-----------G~~~--~~~~a~l~l~~l--  394 (532)
                        .. .++|-++.++||++..+-  .+|+++.+++  +.+.+.......           +...  ....+|..++.+  
T Consensus       260 ~~f~l~~vdSIt~d~HK~g~aP~--~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~  337 (460)
T COG0076         260 WDFGLEGVDSITVDGHKYGLAPI--GCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGR  337 (460)
T ss_pred             hhcCCCCceEEEECcccccCCCC--CceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCH
Confidence              11 278999999999987654  3566665443  333332111111           1111  223455554433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          395 KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       395 ~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      +.+...+++..++++++++.|++.+...-+.-|.                 .++|+|.+++
T Consensus       338 eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~-----------------l~~V~fr~~~  381 (460)
T COG0076         338 EGYRKLLDRTLELARYLAEELEKLGDFELVNEPE-----------------LPIVAFRLKD  381 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCc-----------------cceEEEEcCC
Confidence            5566777788899999999999887665565554                 3589999864

>PRK06149 hypothetical protein; Provisional

Probab=99.46  E-value=3.1e-11  Score=141.54  Aligned_cols=288  Identities=14%  Similarity=0.147  Sum_probs=177.8

Q ss_pred             CCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHh-c--------
Q 009523          195 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETV-L--------  261 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~-l--------  261 (532)
                      .+|+.++...+|.++|+++..  .+.+++++||++|+..+++..  .....+||+.+..|+|.......+ .        
T Consensus       618 ~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~  697 (972)
T PRK06149        618 NSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQA  697 (972)
T ss_pred             cccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccc
Confidence            356777888999999999884  467899999999999999832  123356888888888732111000 0        


Q ss_pred             -cc--CCcEEEEeC--------CCC-----HHHHHHhhc-----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhC
Q 009523          262 -PK--MGITATVID--------PAD-----MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  316 (532)
Q Consensus       262 -~~--~Gv~v~~vd--------~~d-----le~Le~al~-----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~  316 (532)
                       ..  .++.....+        ..+     .+++++.++     ..++.+|++|......|.+.+    +++|.++|++|
T Consensus       698 ~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~  777 (972)
T PRK06149        698 LETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR  777 (972)
T ss_pred             cCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc
Confidence             00  011111001        011     234333332     236899999999888888887    99999999999


Q ss_pred             CCEEEEECCCCC-CC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhc-CCCccHHHHH
Q 009523          317 GAIVCIDGTFAT-PL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-GGALNPNAAY  388 (532)
Q Consensus       317 gi~lIvDet~a~-~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~-G~~~~~~~a~  388 (532)
                      |+++|+||++.. +-      .........||++  ++|.+|++  ...|++++++++.+.+......+ +...+|..+.
T Consensus       778 g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~G--~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~a  853 (972)
T PRK06149        778 GGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGNG--HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCR  853 (972)
T ss_pred             CCEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccCC--eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHH
Confidence            999999999632 11      1122234578885  89999864  45788889998888775311111 1235788887


Q ss_pred             HHHHhHHHHHHHHHHHHHHH----HHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-----
Q 009523          389 LIIRGMKTLHLRVQQQNSTA----LRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-----  455 (532)
Q Consensus       389 l~l~~l~tl~~r~~~~~~~a----~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-----  455 (532)
                      .++..++.+..  ++..+++    +++.+.|++    +|.+.                  ..+|.|.|+.+++..     
T Consensus       854 aala~L~~i~~--e~l~~~~~~~G~~l~~~L~~l~~~~~~i~------------------~vrG~Gl~~gvel~~~~~~~  913 (972)
T PRK06149        854 IGMAVLDVLRE--EKLQENARRVGDHLKARLEALADRHPLIG------------------AVHGMGLYLGVELVRDRQTL  913 (972)
T ss_pred             HHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeE------------------EEeecceEEEEEEecCcccC
Confidence            77777776542  1233444    444444443    22222                  235788999999842     


Q ss_pred             --CHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHH
Q 009523          456 --DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKADVLQAL  529 (532)
Q Consensus       456 --~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~dL~~AL  529 (532)
                        ..+....+.+.+...|+-+...                         |...+.|||.    +..++.+.+++.|+++|
T Consensus       914 ~~~~~~~~~i~~~l~~~Gvl~~~~-------------------------g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l  968 (972)
T PRK06149        914 EPATEETAAICDRLLELGVIMQPT-------------------------GDHLNILKIKPPLCLDRESADFFVDMLDRVL  968 (972)
T ss_pred             CCChHHHHHHHHHHHhCCeEEeec-------------------------CCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence              1233556666665555443321                         1123567754    44567778888888887


Q ss_pred             hh
Q 009523          530 HA  531 (532)
Q Consensus       530 ~~  531 (532)
                      .+
T Consensus       969 ~~  970 (972)
T PRK06149        969 TE  970 (972)
T ss_pred             Hh
Confidence            64

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.46  E-value=1e-11  Score=141.60  Aligned_cols=212  Identities=15%  Similarity=0.156  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGAEST-VIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..++++.|+++.|-+.+ +..++|+.|..+.++++-.        ..+.|+++...|+.+..    .+...|++++.++.
T Consensus       532 i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa----sa~~~G~~Vv~V~~  607 (939)
T TIGR00461       532 IAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA----SAAMAGMQVVPVNC  607 (939)
T ss_pred             HHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH----HHHHCCCEEEEecc
Confidence            45578999999998754 5556666666555554421        23578999999977653    34556888888875


Q ss_pred             C-----CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC-HHHHHHHHHhCCCEEEEECCCCC-C-CcccccccCCcEEE
Q 009523          274 A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT-P-LNQKALSLGADLVL  343 (532)
Q Consensus       274 ~-----dle~Le~al~~--~~tklV~lesP~NptG~v~d-l~~I~~la~~~gi~lIvDet~a~-~-~~~~~l~~gaDivv  343 (532)
                      +     |+++|++++++  .++++|++.+|+| +|.+.| +++|+++||++|.++++|.++.. . ....|.++|+|+++
T Consensus       608 d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~  686 (939)
T TIGR00461       608 DQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCH  686 (939)
T ss_pred             CCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEE
Confidence            3     89999999974  3799999999999 798877 99999999999999999999744 2 33566789999999


Q ss_pred             ECCccccCCC---CCcEEEEEEeChHHHHHHHH--Hh---------hhcCCC----ccH----HHHHHHH--HhHHHHHH
Q 009523          344 HSATKFIGGH---NDVLAGSISGSGKLVTQIRN--LH---------HVLGGA----LNP----NAAYLII--RGMKTLHL  399 (532)
Q Consensus       344 ~S~sK~lgg~---gd~~gG~lv~~~~li~~l~~--~~---------~~~G~~----~~~----~~a~l~l--~~l~tl~~  399 (532)
                      .|.||+|+++   |+...|++..++.+...+..  ..         ...|..    .+.    ..+|..+  -|-+.+..
T Consensus       687 ~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~  766 (939)
T TIGR00461       687 LNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPK  766 (939)
T ss_pred             ecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHH
Confidence            9999977622   22236888887655443321  00         001111    111    2333332  23444555


Q ss_pred             HHHHHHHHHHHHHHHHHhCC
Q 009523          400 RVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p  419 (532)
                      ..+....|+.++++.|+++.
T Consensus       767 ~a~~ailnAnYl~~rL~~~~  786 (939)
T TIGR00461       767 ASVVAILNANYMATRLKDHY  786 (939)
T ss_pred             HHHHHHHHHHHHHHHhhccC
Confidence            55666789999999998754

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.46  E-value=5.3e-12  Score=131.39  Aligned_cols=237  Identities=16%  Similarity=0.210  Sum_probs=153.0

Q ss_pred             CCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc-------c-CCCEEEEcCCCCcchHH-HH-------
Q 009523          196 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV-------P-AGGHIVTTTDCYRKTRI-FI-------  257 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all-------~-~Gd~VIv~~~~y~~t~~-~~-------  257 (532)
                      ..+.++...+|.++|.++.+  .+.+++++||++|++.+++...       . ...+|+.....|++... .+       
T Consensus        54 ~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~  133 (339)
T PF00202_consen   54 SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP  133 (339)
T ss_dssp             TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred             cceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence            66788899999999999994  4678899999999999997554       2 33689999999987321 11       


Q ss_pred             -HHhcccCCcEEEEeCCCCHHH----------HHH---hhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCE
Q 009523          258 -ETVLPKMGITATVIDPADMEG----------LEA---ALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  319 (532)
Q Consensus       258 -~~~l~~~Gv~v~~vd~~dle~----------Le~---al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~  319 (532)
                       ..........+..++..++..          +++   .....++.+|++|......|...+    +++|.++|++||++
T Consensus       134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil  213 (339)
T PF00202_consen  134 YRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL  213 (339)
T ss_dssp             HHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred             ccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence             111122223445666666554          222   222336999999998877676653    78999999999999


Q ss_pred             EEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh
Q 009523          320 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  393 (532)
Q Consensus       320 lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~  393 (532)
                      +|+||++...      +........+|+++  ++|.++++  ...|.+++++++.+.+...........+|..+..++..
T Consensus       214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~gG--~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~  289 (339)
T PF00202_consen  214 LIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLGGG--LPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALAT  289 (339)
T ss_dssp             EEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGGTT--SSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHH
T ss_pred             eecccccccccccCCccceecccccCcccc--cccchhhh--hhcccccccchhhccccccccccccccchHhhhhhhhH
Confidence            9999995432      22344556689999  56999976  46777888888776653322111122357777766666


Q ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          394 MKTLHLR--VQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       394 l~tl~~r--~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      ++.+...  .++..+...++.+.|++    ++.+..|                  +|.|.|+.+++.
T Consensus       290 l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~~ie~~  338 (339)
T PF00202_consen  290 LEILEEEDLLERVRELGERLREGLRELAARYPLIGEV------------------RGIGLMIGIELV  338 (339)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEE------------------EEETTEEEEEES
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eeeCeEEEEEEE
Confidence            6655432  33333444444444432    2444333                  567889999885

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.45  E-value=1.7e-11  Score=139.08  Aligned_cols=147  Identities=16%  Similarity=0.233  Sum_probs=114.2

Q ss_pred             HHHHHHHHHhhhCCCcEEEeC-CHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGAESTVIMA-SGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~i~~s-SG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+|++.++++.|.+.+-+.. +|+.+..++++++..       + .++|+++...|+.+...    +...|++++.++.
T Consensus       545 i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas----a~~~GieVv~Vp~  620 (954)
T PRK12566        545 IDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS----AQMAGMRVVIVEC  620 (954)
T ss_pred             HHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH----HHHCCCEEEEecc
Confidence            567899999999998775554 777776666665432       2 35788999899776532    4456899988875


Q ss_pred             C-----CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC-CCc-ccccccCCcEEEE
Q 009523          274 A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-PLN-QKALSLGADLVLH  344 (532)
Q Consensus       274 ~-----dle~Le~al~~--~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~-~~~-~~~l~~gaDivv~  344 (532)
                      +     |+++|++++++  .++++|.+.+|++-.+...|+++|+++||++|+++++|.+... ... ..|.++|+|+++.
T Consensus       621 D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~  700 (954)
T PRK12566        621 DPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHM  700 (954)
T ss_pred             CCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEe
Confidence            3     89999999872  2688899989987766667799999999999999999999653 233 3467899999999


Q ss_pred             CCccccCCC
Q 009523          345 SATKFIGGH  353 (532)
Q Consensus       345 S~sK~lgg~  353 (532)
                      ++||+|+++
T Consensus       701 s~HKtf~~P  709 (954)
T PRK12566        701 NLHKTFCIP  709 (954)
T ss_pred             cCCcccCcC
Confidence            999999744

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.45  E-value=2.9e-11  Score=130.93  Aligned_cols=240  Identities=13%  Similarity=0.170  Sum_probs=147.9

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------C-CCEEEEcCCCCcchHHHHHHhc-----
Q 009523          197 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVL-----  261 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~-Gd~VIv~~~~y~~t~~~~~~~l-----  261 (532)
                      .+.++...+|.++|+++..  .+.+++++||++|+..+++....       + ..+||.....|++.......+-     
T Consensus        86 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~  165 (466)
T PRK07030         86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF  165 (466)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence            4567888889999999874  35788889999999999885421       2 3578888888888431110100     


Q ss_pred             -ccCC---cEEEEeCCC-----------------CHHHHHHhhcC--CCeeEEEEeC-CCCCCCcccC----HHHHHHHH
Q 009523          262 -PKMG---ITATVIDPA-----------------DMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       262 -~~~G---v~v~~vd~~-----------------dle~Le~al~~--~~tklV~les-P~NptG~v~d----l~~I~~la  313 (532)
                       ..++   ..+..++..                 +++++++.+..  +++.+|++|. .....|.+.+    +++|.++|
T Consensus       166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc  245 (466)
T PRK07030        166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC  245 (466)
T ss_pred             cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence             0000   012222211                 24567777742  3699999998 5665676654    78999999


Q ss_pred             HhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-----hhhcCCC-
Q 009523          314 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGGA-  381 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-----~~~~G~~-  381 (532)
                      +++|+++|+||++...      +.......-.|+++  +.|.++|+- ...|.+++++++.+.+...     ...++.+ 
T Consensus       246 ~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~  322 (466)
T PRK07030        246 DRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC--LSKALTGGY-LPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY  322 (466)
T ss_pred             HHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe--eehhccCCc-ccceEEEecHHHHHHHhcccccccccccCCCC
Confidence            9999999999995321      11233445579998  689998641 2467788888888766421     0112222 


Q ss_pred             -ccHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          382 -LNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       382 -~~~~~a~l~l~~l~tl~~r--~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                       .+|..+.+++..++.+...  .++..+..+++.+.|++..     .+|.+          ...+|.|.|+.+++.
T Consensus       323 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-----~~~~v----------~~vrG~Gl~~gie~~  383 (466)
T PRK07030        323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLA-----DHPHV----------AEVRQTGMILAIEMV  383 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-----cCCCE----------EEeEeceeEEEEEec
Confidence             3677777777777665431  2222333344444444321     12211          123578899999985

>PRK07483 hypothetical protein; Provisional

Probab=99.43  E-value=3.1e-11  Score=130.05  Aligned_cols=294  Identities=15%  Similarity=0.190  Sum_probs=172.5

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhc-----
Q 009523          197 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVL-----  261 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l-----  261 (532)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..+++....       +| .+||.....|++.......+-     
T Consensus        69 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~  148 (443)
T PRK07483         69 FFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWR  148 (443)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCccc
Confidence            3567888899999999874  36788899999999999874321       33 468888888888431110100     


Q ss_pred             -ccCC---cEEEEeCC----CC--------------HHHHHHhhc---CCCeeEEEEeCCCC-CCCcccC----HHHHHH
Q 009523          262 -PKMG---ITATVIDP----AD--------------MEGLEAALN---NNNVSLFFTESPTN-PFLRCVD----VKLVSD  311 (532)
Q Consensus       262 -~~~G---v~v~~vd~----~d--------------le~Le~al~---~~~tklV~lesP~N-ptG~v~d----l~~I~~  311 (532)
                       ..++   ..+..++.    .+              ++++++++.   ..++.+|++|.... ..|.+.+    +++|.+
T Consensus       149 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~  228 (443)
T PRK07483        149 REPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIRE  228 (443)
T ss_pred             ccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHH
Confidence             0011   11122221    11              256666553   23689999998874 3465554    889999


Q ss_pred             HHHhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCC--
Q 009523          312 LCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA--  381 (532)
Q Consensus       312 la~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~--  381 (532)
                      +|++||+++|+||++...      +.......-.||++  ++|.++++- ...|.+++++++.+.+....  ..++.+  
T Consensus       229 lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~  305 (443)
T PRK07483        229 VCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGAGY-QPIGAVLASDRIYDAIADGSGFFQHGHTYL  305 (443)
T ss_pred             HHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhccCc-cccEEEEEcHHHHHHHhcCCCccccCCCCC
Confidence            999999999999995422      11223344578888  789998651 23677778888877765311  012222  


Q ss_pred             ccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          382 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      -+|..+.+++..++.+..  .+++..+..+++.+.|++    +|.+.                  +.+|.|.|+.+++..
T Consensus       306 gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vRG~Glm~gie~~~  367 (443)
T PRK07483        306 GHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVG------------------DIRGRGLFVGVELVA  367 (443)
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCee------------------eEeecccEEEEEEee
Confidence            367777776666665532  123333334444444443    22222                  235788899999853


Q ss_pred             CH----------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe----cCCCHHHH
Q 009523          456 DL----------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----GVEDFEDL  521 (532)
Q Consensus       456 ~~----------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G~ed~~dl  521 (532)
                      +.          .....+...+...++-+...+.        .            .-|..++.|||.-    ..++.++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~--------~------------~~~~~~~~l~~~PpL~it~~eid~~  427 (443)
T PRK07483        368 DRATKAPFDPALKLHARIKREAMARGLMVYPMGG--------T------------IDGVRGDHVLLAPPFIITAAQIDEI  427 (443)
T ss_pred             cccccCCCCchhhHHHHHHHHHHHCCcEEEecCc--------c------------ccCCCCCEEEEECCCCCCHHHHHHH
Confidence            21          1234555555444433221100        0            0011135778654    44677778


Q ss_pred             HHHHHHHHhh
Q 009523          522 KADVLQALHA  531 (532)
Q Consensus       522 i~dL~~AL~~  531 (532)
                      ++.|+++|.+
T Consensus       428 ~~~l~~~l~~  437 (443)
T PRK07483        428 VERLGDAIDA  437 (443)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.43  E-value=5.3e-11  Score=127.89  Aligned_cols=287  Identities=12%  Similarity=0.118  Sum_probs=167.1

Q ss_pred             CCCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHhcc--------C------CCEEEEcCCCCcchHHHHHH
Q 009523          197 RYGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVP--------A------GGHIVTTTDCYRKTRIFIET  259 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~---ga~~~i~~sSG~~Ai~~al~all~--------~------Gd~VIv~~~~y~~t~~~~~~  259 (532)
                      .+.++...++.++|+++.   +.+.+++++||++|++.+++....        .      +.+||.....|+|.......
T Consensus        81 ~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als  160 (431)
T TIGR03251        81 DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLS  160 (431)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhh
Confidence            455677777888888875   236788999999999999875421        1      36799999999884322111


Q ss_pred             hcc------cCC-------cEEEEe--C-------------CCCHHHHHHhhc--CCCeeEEEEeCCCCCCCcccC----
Q 009523          260 VLP------KMG-------ITATVI--D-------------PADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD----  305 (532)
Q Consensus       260 ~l~------~~G-------v~v~~v--d-------------~~dle~Le~al~--~~~tklV~lesP~NptG~v~d----  305 (532)
                      .-.      .+.       +...+.  +             ..+++++++.+.  .+++.+|++|......|.+.+    
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~  240 (431)
T TIGR03251       161 LTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEF  240 (431)
T ss_pred             ccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHH
Confidence            100      000       000000  0             012445555663  236999999998887887753    


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeCh--HHHHHHHHHhhh
Q 009523          306 VKLVSDLCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHV  377 (532)
Q Consensus       306 l~~I~~la~~~gi~lIvDet~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~--~li~~l~~~~~~  377 (532)
                      +++|.++|++||+++|+||++... .     ..+......|+++  ++|.+.     ++|++.+++  ++..........
T Consensus       241 l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~~-----~~g~~~~~~i~~~~~~~~~~~~~  313 (431)
T TIGR03251       241 LRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKTQ-----VCGIMAGRRVDEVADNVFAVPSR  313 (431)
T ss_pred             HHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccCc-----cceEEecchHHHhhhhcccCccc
Confidence            889999999999999999996531 1     1223344678887  678762     357776543  222111110111


Q ss_pred             cCC--CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEE
Q 009523          378 LGG--ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV  453 (532)
Q Consensus       378 ~G~--~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l  453 (532)
                      .+.  ..+|..+.++...++.+..  ..++..+..+++.+.|++.-.    .+|.+.         ...+|.|.|+.+++
T Consensus       314 ~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~i---------~~vrg~G~~~~i~~  380 (431)
T TIGR03251       314 LNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAA----EFPHLV---------SNPRGRGLMCAFDL  380 (431)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCccce---------ecccccceeEEEEe
Confidence            122  2356666666666665432  123333444455544443100    112111         01245688999999


Q ss_pred             cCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          454 DGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       454 ~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++ ......+...+...++-+...                           ..+.|||+..+..+++.++.+.++|++
T Consensus       381 ~~-~~~~~~~~~~l~~~Gvl~~~~---------------------------g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       381 PS-TADRDEVIRQLYREGVLLLGC---------------------------GERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             CC-HHHHHHHHHHHHhCCeEEecC---------------------------CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            64 234456666665555433211                           125699999998888888888888765

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK06148 hypothetical protein; Provisional

Probab=99.42  E-value=1.1e-10  Score=137.21  Aligned_cols=288  Identities=16%  Similarity=0.127  Sum_probs=176.8

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHH-HH----HhcccCC-
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF-IE----TVLPKMG-  265 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~-~~----~~l~~~G-  265 (532)
                      +++.+|...+|.++|+++...  +.+.+++||++|+..+++...  ....+||+....|+|.... +.    ..-...+ 
T Consensus       658 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~  737 (1013)
T PRK06148        658 TRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGK  737 (1013)
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCC
Confidence            477889999999999998754  568899999999999987542  2345788888888884211 10    0000111 


Q ss_pred             ---cEEEEe--------CCC--C-------HHHHHHhhc-----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhC
Q 009523          266 ---ITATVI--------DPA--D-------MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  316 (532)
Q Consensus       266 ---v~v~~v--------d~~--d-------le~Le~al~-----~~~tklV~lesP~NptG~v~d----l~~I~~la~~~  316 (532)
                         -.+..+        +..  +       .+.+++.++     ..++.+|++|......|.+.+    +++|.++|+++
T Consensus       738 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~  817 (1013)
T PRK06148        738 GRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA  817 (1013)
T ss_pred             CCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh
Confidence               011111        111  1       134555443     136999999998877787776    88999999999


Q ss_pred             CCEEEEECCCCCC-------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHHH
Q 009523          317 GAIVCIDGTFATP-------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAA  387 (532)
Q Consensus       317 gi~lIvDet~a~~-------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~a  387 (532)
                      |+++|.||++...       +.+.....-.||++  +.|.+|++  ...|++++++++.+.+.... .++++  .+|..+
T Consensus       818 g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lggG--~Plgav~~~~ei~~~~~~g~-~~~~Tf~gnpla~  892 (1013)
T PRK06148        818 GGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGNG--HPMGAVVTTREIADSFDNGM-EYFNTFGGNPVSC  892 (1013)
T ss_pred             CCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccCC--cceEEEEEcHHHHhhccCCC-ccccCCCCCHHHH
Confidence            9999999995321       11222344578887  79999875  35777888888887764311 12222  367777


Q ss_pred             HHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----
Q 009523          388 YLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----  456 (532)
Q Consensus       388 ~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----  456 (532)
                      .+++..++.+..  .+++..+..+++.+.|++    +|.+.                  ..+|.|.|+.+++..+     
T Consensus       893 aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~------------------~VrG~Gl~~gvel~~~~~~~~  954 (1013)
T PRK06148        893 AIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG------------------DVRGMGLFLGIELVTDRKTKA  954 (1013)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCce------------------EEeeeceEEEEEecCCccccC
Confidence            777777766532  122233333444444433    22222                  2357889999999632     


Q ss_pred             --HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          457 --LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       457 --~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                        .+....+++.+...|+-+...                         |..++.|||...+    ++.+.+++.|+++|.
T Consensus       955 ~~~~~~~~i~~~~~~~Gvl~~~~-------------------------g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~ 1009 (1013)
T PRK06148        955 PATAIARYVKNGARERGILIGTE-------------------------GPHDNVLKIRPPLIFSRADADHLLEVLDDVLA 1009 (1013)
T ss_pred             ccHHHHHHHHHHHHhCCeEEecc-------------------------CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence              123456666665555443221                         1124677777664    556667777777765


Q ss_pred             h
Q 009523          531 A  531 (532)
Q Consensus       531 ~  531 (532)
                      +
T Consensus      1010 ~ 1010 (1013)
T PRK06148       1010 A 1010 (1013)
T ss_pred             H
Confidence            4

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.42  E-value=3.5e-13  Score=137.84  Aligned_cols=177  Identities=22%  Similarity=0.317  Sum_probs=50.8

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCC---CcchHHHHHHhcccCCcEEEEeCC---CCHHH
Q 009523          205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC---YRKTRIFIETVLPKMGITATVIDP---ADMEG  278 (532)
Q Consensus       205 ~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~---y~~t~~~~~~~l~~~Gv~v~~vd~---~dle~  278 (532)
                      .+++.++++.|+++++++++..+|+.+++.++. +|.+||+++..   +++.++. ...++.-|..++.|-.   ..+++
T Consensus        51 ~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRi-p~vm~~sGa~lvEVGttN~t~~~D  128 (367)
T PF03841_consen   51 HVEELLCELTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRI-PDVMRQSGARLVEVGTTNRTHLSD  128 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            467889999999999999999999999888876 47788888654   4554432 2455666776665543   35889


Q ss_pred             HHHhhcCCCeeEEEEeCCCCCCCc----ccCHHHHHHHHHhCCCEEEEECCCC------------CCCcccccccCCcEE
Q 009523          279 LEAALNNNNVSLFFTESPTNPFLR----CVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLGADLV  342 (532)
Q Consensus       279 Le~al~~~~tklV~lesP~NptG~----v~dl~~I~~la~~~gi~lIvDet~a------------~~~~~~~l~~gaDiv  342 (532)
                      ++++|++ +|.+++--+++|..-.    -.+++++++++++|++++++|..-+            .+-....+..|+|+|
T Consensus       129 ye~AI~e-~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  129 YEKAITE-NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             ccccccc-cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            9999998 6888877688887322    3589999999999999999998731            122234467899999


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAA  387 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a  387 (532)
                      ++|.-|.+||+.   +|+++|++++++++++..-......+-...
T Consensus       208 ~fSGdKlLGGPQ---aGiI~Gkk~lI~~lk~~pl~RalrvdK~tl  249 (367)
T PF03841_consen  208 TFSGDKLLGGPQ---AGIIVGKKELIEKLKKHPLGRALRVDKLTL  249 (367)
T ss_dssp             EEETTSSSSS-S----EEEEEEHHHHHHHHHHHHTTT-B--HHHH
T ss_pred             EEECCCcCCCCC---eEEEEeCHHHHHHHhhCCCcceEeeCHHHH
Confidence            999999999986   899999999999998654333333343333

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.42  E-value=2e-10  Score=124.23  Aligned_cols=233  Identities=13%  Similarity=0.107  Sum_probs=140.4

Q ss_pred             CCCchhHHHHHHHHHhhhCCC----cEEEe-CCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc--------
Q 009523          197 RYGNPTTVVVEEKMSALEGAE----STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL--------  261 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~----~~i~~-sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l--------  261 (532)
                      .+.++...+|.++|+++.+..    ..+++ +||++|+..+++...  ...++||.....|++........-        
T Consensus        97 ~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~  176 (459)
T PRK06931         97 DLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNA  176 (459)
T ss_pred             ccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccC
Confidence            356788888999999887532    24455 799999999987442  234678888888988543221110        


Q ss_pred             -ccCCcEEEEeCCC-------------CHHHH----HHhhc-----CCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          262 -PKMGITATVIDPA-------------DMEGL----EAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       262 -~~~Gv~v~~vd~~-------------dle~L----e~al~-----~~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                       ......+.+++..             +.+.+    ++.+.     ..++.+|++|......|.+.+    +++|.++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~  256 (459)
T PRK06931        177 VNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQ  256 (459)
T ss_pred             CCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence             0001122333321             12222    33332     125899999998877777665    789999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCC--CccHHH
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNA  386 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~--~~~~~~  386 (532)
                      +||+++|.||++...      +.......-.||++  ++|.++++  ...|++++++++ +.+...  .+++  ..+|..
T Consensus       257 ~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~gG--~Pi~av~~~~~~-~~~~~~--~~~~T~~gnpla  329 (459)
T PRK06931        257 KHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGGG--LPLAVLGIKKEF-DAWQPG--GHTGTFRGNQLA  329 (459)
T ss_pred             HcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccCC--cceeeeeeHHHH-hhccCC--CCCCCCCCCHHH
Confidence            999999999995422      12233344578988  78999875  345667766653 443221  1222  246777


Q ss_pred             HHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          387 AYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       387 a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      +..++..++.+..  ..++..+..+++.+.|++    +|.+..                  .+|.|.|+.+++.
T Consensus       330 ~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~------------------vrG~Glm~giel~  385 (459)
T PRK06931        330 MATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGN------------------VRGRGLMIGIEIV  385 (459)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEe------------------EecCceEEEEEEc
Confidence            7777777765532  122222333444444433    332222                  3577889999995

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.40  E-value=1.6e-10  Score=124.02  Aligned_cols=287  Identities=14%  Similarity=0.119  Sum_probs=172.0

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhcc----
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP----  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l~----  262 (532)
                      ...++...++.++|+++.+.  +.+++++||++|+..+++....       +| .+||+....|++.......+..    
T Consensus        84 ~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~  163 (427)
T TIGR00508        84 GFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENS  163 (427)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccc
Confidence            34567778888999988754  5788899999999998875431       23 5789999999885322111100    


Q ss_pred             ---cCC--c-EEEEeC-----------CCCHHHHHHhhcC--CCeeEEEEeCC-CCCCCccc----CHHHHHHHHHhCCC
Q 009523          263 ---KMG--I-TATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCV----DVKLVSDLCHKKGA  318 (532)
Q Consensus       263 ---~~G--v-~v~~vd-----------~~dle~Le~al~~--~~tklV~lesP-~NptG~v~----dl~~I~~la~~~gi  318 (532)
                         .++  . .+..++           ..|++++++.+..  .++.+|++|.. ++..|.+.    .+++|.++|++||+
T Consensus       164 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~  243 (427)
T TIGR00508       164 MHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDI  243 (427)
T ss_pred             ccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC
Confidence               000  0 011111           1146677777742  25889999986 55445433    48899999999999


Q ss_pred             EEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---hhcCC--CccHHHH
Q 009523          319 IVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGG--ALNPNAA  387 (532)
Q Consensus       319 ~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---~~~G~--~~~~~~a  387 (532)
                      ++|+||++...      +.........|+++  ++|.++|+ -...+.+++++++.+.++...   ..++.  ..+|..+
T Consensus       244 llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG-~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~  320 (427)
T TIGR00508       244 LLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTGG-YMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLAC  320 (427)
T ss_pred             EEEEeccccCCCcCCccchhhhcCCCCCEEE--echhhhcC-cccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHH
Confidence            99999996321      11222344578887  79999653 234677888888888776321   01111  2357777


Q ss_pred             HHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH
Q 009523          388 YLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID  465 (532)
Q Consensus       388 ~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~  465 (532)
                      ..++..++.+..  ..++..+...++.+.|++...     +|.+          ...+|.|.++.+++... .....+.+
T Consensus       321 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i----------~~vrg~G~~~~i~~~~~-~~~~~~~~  384 (427)
T TIGR00508       321 AVAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-----NPVV----------KDVRVLGAIGVVEMYKP-VNVEELQK  384 (427)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCCE----------EeEeccccEEEEEECCc-cCHHHHHH
Confidence            666666665432  234445566666666665311     2211          11256788999999632 23445665


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                      .+...++-+...                            .+.+|++..+    ++++.+++.|+++|.
T Consensus       385 ~l~~~Gv~~~~~----------------------------~~~l~~~ppl~~t~~~id~~~~~l~~~l~  425 (427)
T TIGR00508       385 KFVEQGVWIRPF----------------------------GKLIYVMPPYIITTEQLQKLTAALIEALH  425 (427)
T ss_pred             HHHHCCeEEEec----------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            655444433210                            1357776654    455666666666664

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.40  E-value=2.8e-11  Score=134.80  Aligned_cols=149  Identities=13%  Similarity=0.198  Sum_probs=118.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +.....+.++..|+++|++++.++.+|+ .+|.+++++++++||.|++++++|.+.+.    .+...|+..+++.+.   
T Consensus       193 ~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~h----aLilsga~PVYl~P~rn~  268 (714)
T PRK15400        193 HSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH----LMMMSDVTPIYFRPTRNA  268 (714)
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeEEEecccccc
Confidence            4455678899999999999999999997 88999999999999999999999998664    344567777776432   


Q ss_pred             -------C-----HHHHHHhhcCC-Cee---EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc------
Q 009523          275 -------D-----MEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------  332 (532)
Q Consensus       275 -------d-----le~Le~al~~~-~tk---lV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~------  332 (532)
                             +     .+.++++++++ +.+   .+++.+|+ ..|.+.|+++|+++|+.++  +++||+|+....+      
T Consensus       269 ~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~  345 (714)
T PRK15400        269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG  345 (714)
T ss_pred             cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCC
Confidence                   3     78899888653 233   68887885 7899999999999999887  6899998764322      


Q ss_pred             -cccccCC---c--EEEECCccccCCCC
Q 009523          333 -KALSLGA---D--LVLHSATKFIGGHN  354 (532)
Q Consensus       333 -~~l~~ga---D--ivv~S~sK~lgg~g  354 (532)
                       .++..|+   |  +++.|.||.+++.+
T Consensus       346 ~sam~~ga~~~~~i~vtQStHKtL~alT  373 (714)
T PRK15400        346 KCGMSGGRVEGKVIYETQSTHKLLAAFS  373 (714)
T ss_pred             cChhhcCCCCCCceEEEEchhhcccchh
Confidence             2334566   5  99999999999765

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.39  E-value=6.2e-11  Score=116.53  Aligned_cols=295  Identities=16%  Similarity=0.157  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHhc---cCCC--EEEEc-CCCCcchHHHH--HHhcccCCcEE
Q 009523          201 PTTVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV---PAGG--HIVTT-TDCYRKTRIFI--ETVLPKMGITA  268 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga---~~~i~~sSG~-~Ai~~al~all---~~Gd--~VIv~-~~~y~~t~~~~--~~~l~~~Gv~v  268 (532)
                      +..+.|.+.+-+-+|-   ++.|..++|+ .+...++.-+.   ..|+  +|+.+ .|.|-+.-..-  .+.+-...-++
T Consensus        78 ~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~i  157 (417)
T COG3977          78 VLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNI  157 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCc
Confidence            3444455555555564   5678888998 55555554442   2343  45554 66776532110  00110011111


Q ss_pred             EEeC------CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc------c
Q 009523          269 TVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------K  333 (532)
Q Consensus       269 ~~vd------~~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~------~  333 (532)
                      ..++      ..|.++|.  +.+ ++.+|++.-|+||||.+..   +.+|.++|++||+++++|++|+.|++-      .
T Consensus       158 el~~~g~FKY~vDF~~l~--i~e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~  234 (417)
T COG3977         158 ELLPAGQFKYHVDFEHLH--IGE-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDAT  234 (417)
T ss_pred             ccccccceeeccCHHHcc--ccc-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccc
Confidence            1111      12566654  234 6999999999999999985   556677789999999999999987652      1


Q ss_pred             ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC---CCccHHHHHHHHH-h-HHHHHHHH-HHH-HH
Q 009523          334 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG---GALNPNAAYLIIR-G-MKTLHLRV-QQQ-NS  406 (532)
Q Consensus       334 ~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G---~~~~~~~a~l~l~-~-l~tl~~r~-~~~-~~  406 (532)
                      ++-...-+.+.|+||.--++  .+.|++++++++++.+..+.....   +.+++..+.-++. + +..+...+ +-. ..
T Consensus       235 ~~w~~NiilC~SLSK~GLPG--~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~  312 (417)
T COG3977         235 PLWNENIILCMSLSKLGLPG--SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRN  312 (417)
T ss_pred             ccCCCCEEEEeehhhcCCCC--cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHH
Confidence            22112347889999975444  478999999999998876554333   3334432222211 1 11111111 111 12


Q ss_pred             HHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccE-EEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccc
Q 009523          407 TALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGV-VSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVD  484 (532)
Q Consensus       407 ~a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~-vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~  484 (532)
                      .++...+.|+. .|..+...+                ++-|.+ +|+-+++-+.....+.++|+..|+-+-.|..+....
T Consensus       313 ~~q~~~~~l~~~lp~~~~~iH----------------kpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl  376 (417)
T COG3977         313 RVQTTIAILRRYLPEYRCLIH----------------KPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGL  376 (417)
T ss_pred             HHHHHHHHHHHhcCccceeee----------------cCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCC
Confidence            23333344443 232222211                112444 456565444567788899998888888887654221


Q ss_pred             cCccccccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHh
Q 009523          485 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALH  530 (532)
Q Consensus       485 ~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~  530 (532)
                       +.             .+.-...++|+|+--++  .+.-++.|.+..+
T Consensus       377 -~~-------------ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve  410 (417)
T COG3977         377 -DK-------------EWPHTHQCMRMNYVPEPEKIEKGVAILAEEVE  410 (417)
T ss_pred             -CC-------------CCCCccceEEEecCCCHHHHHHHHHHHHHHHH
Confidence             01             11123578999987544  3444555555444

>PRK06917 hypothetical protein; Provisional

Probab=99.39  E-value=5e-10  Score=120.83  Aligned_cols=294  Identities=13%  Similarity=0.149  Sum_probs=173.8

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCCcchHHHHHHhcc----
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTRIFIETVLP----  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all-------~~G-d~VIv~~~~y~~t~~~~~~~l~----  262 (532)
                      .+.++...+|.++|+++...  +.+++++||++|+..+++...       .+| .+|+.....|++........-.    
T Consensus        70 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~  149 (447)
T PRK06917         70 QFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLR  149 (447)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence            46778888999999998754  457888999999999998542       133 5788888888884322111100    


Q ss_pred             --cC-----CcEEEEeCC---------------CCHHHHHHhhcC---CCeeEEEEeCCCCC-CCcccC----HHHHHHH
Q 009523          263 --KM-----GITATVIDP---------------ADMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKLVSDL  312 (532)
Q Consensus       263 --~~-----Gv~v~~vd~---------------~dle~Le~al~~---~~tklV~lesP~Np-tG~v~d----l~~I~~l  312 (532)
                        .+     ++.....+.               .+++.++++++.   +++.+|++|..... -|.+.+    +++|.++
T Consensus       150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~l  229 (447)
T PRK06917        150 RQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEI  229 (447)
T ss_pred             cccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHH
Confidence              00     111100110               124567777752   25999999987653 345544    7899999


Q ss_pred             HHhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCC--c
Q 009523          313 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGA--L  382 (532)
Q Consensus       313 a~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~--~  382 (532)
                      |++||+++|+||++...      +.......-.|+++  ++|.++++- ...|++++++++.+.+.....  ..+.+  .
T Consensus       230 c~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~G~-~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~g  306 (447)
T PRK06917        230 CDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGAGY-TPIAATVVSDRVMEPILRGSRSIMSGHTLSA  306 (447)
T ss_pred             HHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhccCC-cceEEEEEcHHHHHHHhccCcccccccCCCC
Confidence            99999999999995421      11222344578876  799998641 236777888888877653111  12222  4


Q ss_pred             cHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC
Q 009523          383 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD  456 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~  456 (532)
                      +|..+..++..++.+..  .+++..+..+++.+.|++    +|.+.                  ..+|.|.|+.+++..+
T Consensus       307 npl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrG~Gl~~~ie~~~~  368 (447)
T PRK06917        307 NPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIG------------------DVRGKGLLIGVEFVAD  368 (447)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEE------------------EEeecceEEEEEEecc
Confidence            67777777777766532  233444444555555543    22222                  2356788999998421


Q ss_pred             ----------HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHH
Q 009523          457 ----------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLK  522 (532)
Q Consensus       457 ----------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli  522 (532)
                                .+....+...+...++-+...+..                    ..|...+.|||+..+    ++.+.++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--------------------~~g~~~~~i~l~Ppl~it~~eid~~~  428 (447)
T PRK06917        369 KKTKQPFSKSQAVASELISVAAKNGLLLYPAVAG--------------------QDGKEGDAVIIAPPMTITYSELDELL  428 (447)
T ss_pred             CCcCCCCcchhHHHHHHHHHHHhCCcEEEecccc--------------------cCCCCCCEEEEECCCcCCHHHHHHHH
Confidence                      123455655554444333211000                    001124678887553    5566667


Q ss_pred             HHHHHHHhh
Q 009523          523 ADVLQALHA  531 (532)
Q Consensus       523 ~dL~~AL~~  531 (532)
                      +.|+++|++
T Consensus       429 ~~l~~~l~~  437 (447)
T PRK06917        429 SIFAKSVEE  437 (447)
T ss_pred             HHHHHHHHH
Confidence            777776653

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.38  E-value=9.1e-11  Score=126.39  Aligned_cols=286  Identities=13%  Similarity=0.139  Sum_probs=163.9

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhcc--------CC------CEEEEcCCCCcchHHHHHH
Q 009523          197 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--------AG------GHIVTTTDCYRKTRIFIET  259 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all~--------~G------d~VIv~~~~y~~t~~~~~~  259 (532)
                      .+.++...+|.++|+++.+   .+.+.+++||++|++.+++...+        .|      .+||.-...|+|.......
T Consensus        88 ~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als  167 (443)
T PRK08297         88 DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLS  167 (443)
T ss_pred             CcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhh
Confidence            4556777788888988762   35788999999999999985421        12      5799999999884322111


Q ss_pred             hc--c---c--CC------cEEEEe--C--C-----------CCHHHHHHhhc--CCCeeEEEEeCCCCCCCcccC----
Q 009523          260 VL--P---K--MG------ITATVI--D--P-----------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD----  305 (532)
Q Consensus       260 ~l--~---~--~G------v~v~~v--d--~-----------~dle~Le~al~--~~~tklV~lesP~NptG~v~d----  305 (532)
                      .-  .   .  +.      +....+  +  .           .+++++++.+.  .+++.+|++|......|.+.+    
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~y  247 (443)
T PRK08297        168 LTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEF  247 (443)
T ss_pred             hcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHH
Confidence            10  0   0  00      100001  0  0           12355566664  236999999988877777643    


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCC-C-----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH-H--hh
Q 009523          306 VKLVSDLCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-L--HH  376 (532)
Q Consensus       306 l~~I~~la~~~gi~lIvDet~a~~-~-----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~-~--~~  376 (532)
                      +++|.++|++||+++|.||++... -     .......-.|+++  ++|.++     ++|++.+++ +.+.... .  ..
T Consensus       248 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~~-i~~~~~~~~~~~~  319 (443)
T PRK08297        248 FAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGRR-VDEVEDNVFAVSS  319 (443)
T ss_pred             HHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecchH-HHHhhhhhccCcc
Confidence            889999999999999999996432 1     1122334578887  789985     356665543 2221111 1  01


Q ss_pred             hcCCC--ccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEE
Q 009523          377 VLGGA--LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE  452 (532)
Q Consensus       377 ~~G~~--~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~  452 (532)
                      ..+++  .+|..+.+++..++.+..  .+++..+..+++.+.|++...    .+|.+         ....+|.|.|+.++
T Consensus       320 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~---------~~~vrg~G~~~~i~  386 (443)
T PRK08297        320 RINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAA----EFPAV---------VSNVRGRGLMCAFD  386 (443)
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----HCCCc---------ceeeeccceEEEEE
Confidence            12222  467776666666665432  233444444455554543200    01211         01224578899999


Q ss_pred             EcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHH
Q 009523          453 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQA  528 (532)
Q Consensus       453 l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~A  528 (532)
                      +.. ......+...+...|+-+..+                           ..+.+||+..+    ++.+.+++.|+++
T Consensus       387 ~~~-~~~~~~~~~~l~~~Gvl~~~~---------------------------~~~~lr~~P~l~~t~~eid~~l~~l~~~  438 (443)
T PRK08297        387 LPT-TADRDEVIRRLWEEGVLVLPC---------------------------GERSIRFRPALTVTTEEIDAAIDALRRA  438 (443)
T ss_pred             ecC-HHHHHHHHHHHHHCCEEEecC---------------------------CCCeEEEECCccCCHHHHHHHHHHHHHH
Confidence            964 344556666665445433211                           12457886554    4556666666666


Q ss_pred             Hhh
Q 009523          529 LHA  531 (532)
Q Consensus       529 L~~  531 (532)
                      |..
T Consensus       439 l~~  441 (443)
T PRK08297        439 LPE  441 (443)
T ss_pred             HHh
Confidence            654

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.37  E-value=8.8e-11  Score=116.81  Aligned_cols=251  Identities=19%  Similarity=0.217  Sum_probs=163.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc------c--CCC--EEEEcCCCCcc-hHH---------HHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV------P--AGG--HIVTTTDCYRK-TRI---------FIET  259 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all------~--~Gd--~VIv~~~~y~~-t~~---------~~~~  259 (532)
                      |....++++.+++++|.+.++-+++|.||.+.++.-..      +  |.|  .|+.....|++ |..         -+..
T Consensus       100 nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~  179 (427)
T KOG1402|consen  100 NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDG  179 (427)
T ss_pred             hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhc
Confidence            44566789999999999999999999999999886432      1  323  45555666655 111         1111


Q ss_pred             hcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------
Q 009523          260 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------  329 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------  329 (532)
                      +-.-....+..++-.|.++|+.+++..+++++++|..+..-|.+.|    ++++.++|.+|++++|.||++...      
T Consensus       180 fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~  259 (427)
T KOG1402|consen  180 FGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKL  259 (427)
T ss_pred             cCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcE
Confidence            1111111256677789999999998878999999999999999987    889999999999999999996431      


Q ss_pred             CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 009523          330 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTLHLRVQQQNST  407 (532)
Q Consensus       330 ~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~  407 (532)
                      +..+....-.|+++  +.|.++|+--...+ ++++++++-.++...  ..+|+  +|+.+..+...++.+.+  ++..++
T Consensus       260 la~d~env~PDivi--lgKalSGG~~Pvsa-vl~~~~im~~~~pgeHgsTygg--NpLg~~vaiAalevi~e--ekL~er  332 (427)
T KOG1402|consen  260 LACDYENVRPDIVI--LGKALSGGVYPVSA-VLADDDIMLNIKPGEHGSTYGG--NPLGCAVAIAALEVIVE--EKLVER  332 (427)
T ss_pred             EEeehhhcCCCeEE--EeccccCCeeeeEE-EEecHHHHhccCCCccccccCC--ChHHHHHHHHHHHHHHH--HHHHHH
Confidence            22333344679999  88999976433344 455666665554322  22333  67777777777776543  455666


Q ss_pred             HHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHHHHHHHcCCC
Q 009523          408 ALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATIKFIDALKIP  470 (532)
Q Consensus       408 a~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~~~~~~l~~L~~~  470 (532)
                      +..|.+.|.    +.+.    ..|+         +.+..+|.|.+..+++...   ..++-...-.++..
T Consensus       333 a~~lG~~l~~~L~~l~~----~~p~---------~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~  389 (427)
T KOG1402|consen  333 AAKLGEILRDQLNKLQK----KFPH---------VVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKEN  389 (427)
T ss_pred             HHHHHHHHHHHHHhccc----cccc---------hhheeeccceEEEEEeccccccchhHHHHHHccccc
Confidence            666655544    3321    1222         1233467788888888632   23344444444443

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.35  E-value=4.8e-11  Score=125.67  Aligned_cols=225  Identities=18%  Similarity=0.226  Sum_probs=145.6

Q ss_pred             CCchhHHHHHH----HHHhhhCCC---------cEEEeCCHHHHHHHHHHHhcc--------CC-----C-EEEEcCCCC
Q 009523          198 YGNPTTVVVEE----KMSALEGAE---------STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCY  250 (532)
Q Consensus       198 ~~~p~~~~Le~----~lA~l~ga~---------~~i~~sSG~~Ai~~al~all~--------~G-----d-~VIv~~~~y  250 (532)
                      ...|....+|+    .+++++|.+         ..+++++|++++..++.+..+        .|     . .|++++..|
T Consensus        72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH  151 (373)
T PF00282_consen   72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH  151 (373)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-
T ss_pred             ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence            34577766764    555666655         378999999998877754321        12     2 577777788


Q ss_pred             cchHHHHHHhcccCCcEEEEeCCC-----CHHHHHHhhcCC----C-eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEE
Q 009523          251 RKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN----N-VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV  320 (532)
Q Consensus       251 ~~t~~~~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~----~-tklV~lesP~NptG~v~dl~~I~~la~~~gi~l  320 (532)
                      .+..    ..+..+|+.++.++.+     |+++|++++++.    + +-+|+....+..+|.+-|+++|+++|+++++++
T Consensus       152 ~S~~----Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wl  227 (373)
T PF00282_consen  152 YSIE----KAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWL  227 (373)
T ss_dssp             THHH----HHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EE
T ss_pred             cHHH----HhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceee
Confidence            7744    4556667777777543     788888877531    2 336666777888999999999999999999999


Q ss_pred             EEECCCCCCCcc----cccc---cCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHH----HHhh------------
Q 009523          321 CIDGTFATPLNQ----KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIR----NLHH------------  376 (532)
Q Consensus       321 IvDet~a~~~~~----~~l~---~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~----~~~~------------  376 (532)
                      +||++|+.....    +...   ..+|-+..++||+++-+-+  .|+++.++ .......    .+..            
T Consensus       228 HVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~  305 (373)
T PF00282_consen  228 HVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDY  305 (373)
T ss_dssp             EEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCE
T ss_pred             eecccccccccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccchHHHhccChhhhccccccccccccc
Confidence            999998873221    2222   2579999999999997753  56666544 3332211    0000            


Q ss_pred             ----hcCCC-ccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCC
Q 009523          377 ----VLGGA-LNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG  428 (532)
Q Consensus       377 ----~~G~~-~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pg  428 (532)
                          ..++. ...+..|..++  |.+.+..++++..+.++++++.|++.+.++.+.-|.
T Consensus       306 ~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~  364 (373)
T PF00282_consen  306 GDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPD  364 (373)
T ss_dssp             EEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTS
T ss_pred             ccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence                00111 12345665554  667788899999999999999999999876554443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.35  E-value=6.3e-11  Score=132.05  Aligned_cols=172  Identities=13%  Similarity=0.148  Sum_probs=127.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +.....+.++..|+++|++...++.+|+ .+|.+++++++++||.|++++++|.+.+.    .+...|+..+++.+.   
T Consensus       193 ~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~----aLilsga~PVYl~P~~n~  268 (713)
T PRK15399        193 HTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH----LLMMSDVVPIWLKPTRNA  268 (713)
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeeEEecccccc
Confidence            4455677899999999999999999997 88999999999999999999999998664    344567777776532   


Q ss_pred             -------C-----HHHHHHhhcCC----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEE-EEECCCCCCCcccc---
Q 009523          275 -------D-----MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTFATPLNQKA---  334 (532)
Q Consensus       275 -------d-----le~Le~al~~~----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~l-IvDet~a~~~~~~~---  334 (532)
                             +     .+.++++++++    +++++++.+|+ ..|.+.|+++|+++|   |+.+ ++||+|+....+.+   
T Consensus       269 ~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~  344 (713)
T PRK15399        269 LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQ  344 (713)
T ss_pred             cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccC
Confidence                   2     38888888653    23688888886 789999999999998   6666 69999876432222   


Q ss_pred             ----ccc--CCcEE---EECCccccCCCCCcEEEEEEeChHH-HHHHHHHhhhcCC
Q 009523          335 ----LSL--GADLV---LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGG  380 (532)
Q Consensus       335 ----l~~--gaDiv---v~S~sK~lgg~gd~~gG~lv~~~~l-i~~l~~~~~~~G~  380 (532)
                          +..  |+|.+   +.|.||.+++.+  .+.++-.+..+ .++++.....+.+
T Consensus       345 ~~sam~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~vd~~~~n~a~~m~~S  398 (713)
T PRK15399        345 GKSGMSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGEYDEETFNEAFMMHTS  398 (713)
T ss_pred             CcChhhCCCCCCeeeeeeeehhccccccc--hheeeeecCCCCHHHHHHHHHHHcC
Confidence                222  57877   999999999876  45565544332 2445554444443

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.34  E-value=6.3e-10  Score=126.92  Aligned_cols=238  Identities=15%  Similarity=0.166  Sum_probs=146.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhcc---------------------CCCEEEEcCCCCcc
Q 009523          197 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP---------------------AGGHIVTTTDCYRK  252 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~---------------------~Gd~VIv~~~~y~~  252 (532)
                      .+.++...+|.++|.+..+.   +.+++++||++|++.+++...+                     ...+||.-...|+|
T Consensus       405 ~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG  484 (817)
T PLN02974        405 ENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHG  484 (817)
T ss_pred             ccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCC
Confidence            45677788899999887652   4688889999999998874421                     12369999999988


Q ss_pred             h-HHHHHHh--------c-cc----CCcEE----EE---------eCCC-------------------------------
Q 009523          253 T-RIFIETV--------L-PK----MGITA----TV---------IDPA-------------------------------  274 (532)
Q Consensus       253 t-~~~~~~~--------l-~~----~Gv~v----~~---------vd~~-------------------------------  274 (532)
                      . ...+...        . ..    .+..+    ..         ++..                               
T Consensus       485 ~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~  564 (817)
T PLN02974        485 DTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKA  564 (817)
T ss_pred             CCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHH
Confidence            2 2111100        0 00    01000    00         0000                               


Q ss_pred             CHHHHHHhhc-------CCCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------Ccccccc
Q 009523          275 DMEGLEAALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALS  336 (532)
Q Consensus       275 dle~Le~al~-------~~~tklV~lesP-~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------~~~~~l~  336 (532)
                      ..+.+++.|+       ..++.+|++|.. .+-.|.+.+    +++|.++|++||+++|.||++...      +..+.+.
T Consensus       565 ~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~g  644 (817)
T PLN02974        565 YRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLG  644 (817)
T ss_pred             HHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcC
Confidence            0145666664       236899999985 566677764    789999999999999999996432      2233344


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH----hhhcC--CCccHHHHHHHHHhHHHHHHH--HHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLG--GALNPNAAYLIIRGMKTLHLR--VQQQNSTA  408 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~----~~~~G--~~~~~~~a~l~l~~l~tl~~r--~~~~~~~a  408 (532)
                      .-.||++  +.|.++|+- +..|++++++++.+.+..-    ...+|  ...+|..+..++..++.+...  .+...++.
T Consensus       645 v~PDIi~--~gKgLtgG~-~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~  721 (817)
T PLN02974        645 CKPDIAC--YAKLLTGGL-VPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPG  721 (817)
T ss_pred             CCCCEEe--ecccccCCC-CccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            4579998  889998752 3467778888888876421    01122  234688888877777765431  11222333


Q ss_pred             HHHH--------HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          409 LRMA--------KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       409 ~~la--------~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      .++.        +.|.++|.|..|                  +|.|.|+.+++..
T Consensus       722 ~~l~~~l~~~l~~~l~~~p~V~~V------------------Rg~Gl~~~iel~~  758 (817)
T PLN02974        722 SRLRELWDEELVRAISSLPNVERV------------------VSLGTVLALELDA  758 (817)
T ss_pred             HHHHHHHHHHHHHHHhhCCCeeEE------------------EeeeeEEEEEEec
Confidence            3332        223445555444                  4578899999964

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.32  E-value=3.9e-10  Score=115.25  Aligned_cols=284  Identities=15%  Similarity=0.138  Sum_probs=151.9

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHH-HHHHHHH-HHhcc--C----------CCEEEEcCCCCcchHHHHHHhcccC
Q 009523          201 PTTVVVEEKMSALEGA--ESTVIMASGM-SASTVML-LALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--~~~i~~sSG~-~Ai~~al-~all~--~----------Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      ....++++.+|+++|.  +++|+..+.+ .-+.-++ .+++.  +          .=+.+++-|.|-...    .+.+.+
T Consensus        69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF----ai~E~~  144 (425)
T PF12897_consen   69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF----AITEHF  144 (425)
T ss_dssp             S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH----HHHHHC
T ss_pred             CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH----HHHHhh
Confidence            3567889999999997  4566665555 2222222 12211  1          126899999997654    356778


Q ss_pred             CcEEEEeCC----CCHHHHHHhhc-CCCeeEEEEeCC--CCCCCcccCHHHHHHHHH----hCCCEEEEECCCCCCCcc-
Q 009523          265 GITATVIDP----ADMEGLEAALN-NNNVSLFFTESP--TNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLNQ-  332 (532)
Q Consensus       265 Gv~v~~vd~----~dle~Le~al~-~~~tklV~lesP--~NptG~v~dl~~I~~la~----~~gi~lIvDet~a~~~~~-  332 (532)
                      |++...|+.    .|++.+|+++. +..+|.||+ .|  +||||.++.-+.+.++|.    ..+..++.||+|+..... 
T Consensus       145 Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWc-VP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~  223 (425)
T PF12897_consen  145 GIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWC-VPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYD  223 (425)
T ss_dssp             T-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE--SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSS
T ss_pred             CcEEEecCCCCCCCCHHHHHHHHhcCCccceEEe-CCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccc
Confidence            999988864    38999999984 336899997 55  499999999777777763    468999999998765331 


Q ss_pred             --------cccc----c---CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC---ccHHHHHHHHHhH
Q 009523          333 --------KALS----L---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA---LNPNAAYLIIRGM  394 (532)
Q Consensus       333 --------~~l~----~---gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~---~~~~~a~l~l~~l  394 (532)
                              +.+.    .   +..+++.|+||.--++++  .+++.++++-++.+++......-.   ++++.-...++..
T Consensus       224 ~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG--va~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~  301 (425)
T PF12897_consen  224 EEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG--VAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDA  301 (425)
T ss_dssp             SSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS---EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSH
T ss_pred             cccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc--eeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcCh
Confidence                    1111    1   234788899996544432  578888887777766544333222   2222222233344


Q ss_pred             H-HHHHHHHHHHHH----HHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH
Q 009523          395 K-TLHLRVQQQNST----ALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID  465 (532)
Q Consensus       395 ~-tl~~r~~~~~~~----a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~  465 (532)
                      + .+...|++|.+.    .+.+.+.|+++    .++..+..|.                +|.+|+|++..+  .+.+.++
T Consensus       302 ~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~----------------GGYFIsld~~~G--~AkrvV~  363 (425)
T PF12897_consen  302 EGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK----------------GGYFISLDVLDG--TAKRVVE  363 (425)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S----------------BSS-EEEEESTT---HHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC----------------CceEEEEecCCC--hHHHHHH
Confidence            4 455566666533    22333444432    2466666664                678999998763  4567777


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVL  526 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~  526 (532)
                      ..+..|+.....|.    ..|..-             .-.+..|||.-.....+++-.+++
T Consensus       364 lakeAGV~LT~AGA----tfPyg~-------------DP~D~nIRiAPS~P~leel~~Am~  407 (425)
T PF12897_consen  364 LAKEAGVALTPAGA----TFPYGK-------------DPRDSNIRIAPSYPSLEELETAMD  407 (425)
T ss_dssp             HHHHTTEE---TTT----TSGGG---------------TTS-EEEE--SSS-HHHHHHHHH
T ss_pred             HHHHhCceeCCCCC----CCCCCC-------------CCCCCcEEecCCCCCHHHHHHHHH
Confidence            77777776655332    123210             113679999999988877655544

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.32  E-value=1.2e-10  Score=125.46  Aligned_cols=280  Identities=11%  Similarity=0.050  Sum_probs=160.6

Q ss_pred             CCchhHHHHHHHHHh----hhC--CCcEEEeCCHHHHHHHHHHHhcc--------------------------CC---CE
Q 009523          198 YGNPTTVVVEEKMSA----LEG--AESTVIMASGMSASTVMLLALVP--------------------------AG---GH  242 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~----l~g--a~~~i~~sSG~~Ai~~al~all~--------------------------~G---d~  242 (532)
                      +.++....|.++|++    +..  .+.+++++||++|+..+++....                          +|   .+
T Consensus        98 ~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~  177 (464)
T TIGR00699        98 LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLS  177 (464)
T ss_pred             CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCE
Confidence            567777777777754    443  25788889999999999875421                          11   26


Q ss_pred             EEEcCCCCcchHHHHHHhc-----ccCCc---EEEEeCC-------------------CCHHHHHHhhcC--CCeeEEEE
Q 009523          243 IVTTTDCYRKTRIFIETVL-----PKMGI---TATVIDP-------------------ADMEGLEAALNN--NNVSLFFT  293 (532)
Q Consensus       243 VIv~~~~y~~t~~~~~~~l-----~~~Gv---~v~~vd~-------------------~dle~Le~al~~--~~tklV~l  293 (532)
                      ||.....|++.........     ...+.   .+..++.                   .+++++++++++  .++.+|++
T Consensus       178 ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~  257 (464)
T TIGR00699       178 ILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIV  257 (464)
T ss_pred             EEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            9999999988432211110     00011   1111110                   135667777743  26999999


Q ss_pred             eCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------CcccccccC--CcEEEECCccccCCCCCcEEEEE
Q 009523          294 ESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLG--ADLVLHSATKFIGGHNDVLAGSI  361 (532)
Q Consensus       294 esP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------~~~~~l~~g--aDivv~S~sK~lgg~gd~~gG~l  361 (532)
                      |......|.+.+    +++|.++|++||+++|+||++...      +........  .|+++  ++|.+++.     |++
T Consensus       258 EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~g-----G~~  330 (464)
T TIGR00699       258 EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQTA-----GYF  330 (464)
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhccC-----Ccc
Confidence            999888898887    899999999999999999995321      112222222  78877  78999633     333


Q ss_pred             EeChHHHHHHHHHhhhcCC--CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CC-CceEEeCCCCCCC
Q 009523          362 SGSGKLVTQIRNLHHVLGG--ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA----HP-KVKRVHYPGLKSH  432 (532)
Q Consensus       362 v~~~~li~~l~~~~~~~G~--~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~----~p-~v~~V~~Pgl~s~  432 (532)
                      ++++ .+.....  ...++  ..+|..+..++..++.+..  ..++..+..+++.+.|++    +| .|..|..      
T Consensus       331 ~~~~-~~~~~~~--~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg------  401 (464)
T TIGR00699       331 FHDP-AFRPNKP--YRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG------  401 (464)
T ss_pred             ccch-hccCCCC--cccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc------
Confidence            3332 2111001  11222  2356666666666665532  112222223444444443    33 2222210      


Q ss_pred             chhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE
Q 009523          433 PEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS  512 (532)
Q Consensus       433 p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS  512 (532)
                                .|.|.|+.++++. .....++++.+...|+-+...                           ..+.|||.
T Consensus       402 ----------~G~Glm~gie~~~-~~~~~~i~~~~~~~Gvl~~~~---------------------------g~~~ir~~  443 (464)
T TIGR00699       402 ----------KGRGTFIAWDTPD-EAKRDKLLKKARNNGVNIGGC---------------------------GVKAIRLR  443 (464)
T ss_pred             ----------cCeEEEEEEecCC-HHHHHHHHHHHHHCCcEEecC---------------------------CCCeEEEe
Confidence                      1578899999964 344566776665545433210                           13678998


Q ss_pred             ecCCCHHHHHHHHHHHHhh
Q 009523          513 FGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       513 vG~ed~~dli~dL~~AL~~  531 (532)
                      ..+--.++.++.+.++|++
T Consensus       444 Ppl~it~~eid~~~~~l~~  462 (464)
T TIGR00699       444 PMLVFQKHHADIFLEIISK  462 (464)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            8776666666666666553

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.32  E-value=3.2e-10  Score=112.93  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcch-HHHHHHhcccCCcEEEEeCCCCHH
Q 009523          203 TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       203 ~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t-~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      -+.|-.+||-+.|+  .+++++.+-+--++-++.+.+  ++|+.||+++-.-.++ +...+......++.....-.+.++
T Consensus        78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~  157 (407)
T COG3844          78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPR  157 (407)
T ss_pred             hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChH
Confidence            35577888999997  345555544455556666554  3588888876544443 322323333334332222234678


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccccCCCCCc
Q 009523          278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDV  356 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~lgg~gd~  356 (532)
                      ++++++++ ++.+|++.+.+--||...|+.+|.+++|++|++++-|=+++.+ ++.+.-..|+|+-|.+.+||++|+.+.
T Consensus       158 ~~~~~~~d-d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGa  236 (407)
T COG3844         158 ALEEAITD-DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGA  236 (407)
T ss_pred             HHHHhhcc-ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCC
Confidence            99999988 7999999999888999999999999999999999999997665 455666789999999999999988767


Q ss_pred             EEEEEEeC
Q 009523          357 LAGSISGS  364 (532)
Q Consensus       357 ~gG~lv~~  364 (532)
                      .+|+.+.+
T Consensus       237 pa~l~v~~  244 (407)
T COG3844         237 PAGLFVAP  244 (407)
T ss_pred             ceeEEecc
Confidence            77776654

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.31  E-value=7.3e-11  Score=121.87  Aligned_cols=187  Identities=22%  Similarity=0.320  Sum_probs=134.1

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCc--chHHHHHHhcccCCcEEEEeCC---CCHHHH
Q 009523          205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR--KTRIFIETVLPKMGITATVIDP---ADMEGL  279 (532)
Q Consensus       205 ~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~--~t~~~~~~~l~~~Gv~v~~vd~---~dle~L  279 (532)
                      .+.+.++.+.|++++.++++-+.|+..++.++.+ +.+||++...--  +.. -+...++..|.++..+..   ....++
T Consensus        72 ~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~-~v~d~~~~aG~~l~EvG~tn~t~~~d~  149 (395)
T COG1921          72 ELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAF-RVPDIIRLAGAKLVEVGTTNRTHLKDY  149 (395)
T ss_pred             HHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCC-ChhHHHHHcCCEEEEecccCcCCHHHH
Confidence            4566667777788999999999999999888876 556665532111  111 133456667888777753   368899


Q ss_pred             HHhhcCCCeeEEEEeCCCC-CCCcccCHHHHHHHHHhCCCEEEEECCCCCC-----CcccccccCCcEEEECCccccCCC
Q 009523          280 EAALNNNNVSLFFTESPTN-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLVLHSATKFIGGH  353 (532)
Q Consensus       280 e~al~~~~tklV~lesP~N-ptG~v~dl~~I~~la~~~gi~lIvDet~a~~-----~~~~~l~~gaDivv~S~sK~lgg~  353 (532)
                      +.+|.+ +|++++=..-+| +.-...+.++++++||++|+++++|.+-+..     -....+..|+|+|++|..|.|||+
T Consensus       150 ~~AIne-~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGP  228 (395)
T COG1921         150 ELAINE-NTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGP  228 (395)
T ss_pred             HHHhcc-CCeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCC
Confidence            999998 466555433333 2223457889999999999999999986543     224456789999999999999998


Q ss_pred             CCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH
Q 009523          354 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL  397 (532)
Q Consensus       354 gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl  397 (532)
                      .   +|+++|++++++++++..-..+...+......+.+.++.+
T Consensus       229 q---aGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y  269 (395)
T COG1921         229 Q---AGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELY  269 (395)
T ss_pred             c---cceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHH
Confidence            5   9999999999999987665556556655555555555544

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.31  E-value=3e-10  Score=115.59  Aligned_cols=261  Identities=18%  Similarity=0.209  Sum_probs=164.5

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh-ccCC-CEEEEcCCCCcchHHHHHHh--ccc--C
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAG-GHIVTTTDCYRKTRIFIETV--LPK--M  264 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~al-l~~G-d~VIv~~~~y~~t~~~~~~~--l~~--~  264 (532)
                      |...-|-+|...++.++|++.+..  ..+++++||++|++++++.. +-.| -+||.-+..|++....-..+  +..  .
T Consensus        84 H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~  163 (442)
T KOG1404|consen   84 HTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQ  163 (442)
T ss_pred             EeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccc
Confidence            556667788888888888888765  45788899999999988744 2222 36888888888843211000  110  0


Q ss_pred             ---Cc--EEEEeC-CC--------C---------HHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009523          265 ---GI--TATVID-PA--------D---------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  314 (532)
Q Consensus       265 ---Gv--~v~~vd-~~--------d---------le~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la~  314 (532)
                         +.  .+.... ++        +         .++++..+.   +.++.+.+.|+.....|.+.+    +++..++|+
T Consensus       164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~  243 (442)
T KOG1404|consen  164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR  243 (442)
T ss_pred             cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence               01  011111 10        1         234444442   236889999999988888875    889999999


Q ss_pred             hCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---hhcCCCccHH
Q 009523          315 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPN  385 (532)
Q Consensus       315 ~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---~~~G~~~~~~  385 (532)
                      ++|.++|.||++...      +.++....-.||+.  +.|.+|.+  ...|.++..+++.+.+.+..   ..+|+  +|.
T Consensus       244 k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvT--mAKgiGnG--~Pl~AVvtt~EIa~v~~~~~~~fnTygg--nP~  317 (442)
T KOG1404|consen  244 KRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVT--MAKGIGNG--FPLGAVVTTPEIADVLNQKSSHFNTYGG--NPV  317 (442)
T ss_pred             HcCCEEEehhhhhccccccccccccccCCCccHHH--HHhhccCC--CcceeeecCHHHHHHHHhccccccccCC--Cch
Confidence            999999999995431      22232333356765  99999866  35677778888888776533   23343  677


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--------CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH
Q 009523          386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEA--------HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL  457 (532)
Q Consensus       386 ~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~--------~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~  457 (532)
                      .+...+..++-+.+  ++..+|+..+..+|.+        +|-|..                  .+|.|.|+.+|+-++.
T Consensus       318 a~avg~aVL~Vike--e~LqE~aa~vG~yl~~~l~~l~d~h~iIGd------------------VRG~GLm~GvE~V~dk  377 (442)
T KOG1404|consen  318 ACAVGLAVLKVIKE--ENLQENAAEVGSYLLEKLAALKDKHPIIGD------------------VRGRGLMLGVELVSDK  377 (442)
T ss_pred             hHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHhhcCCceee------------------cccceeEEEEEEeccc
Confidence            77776666665443  4566777766666543        233322                  2678899999986432


Q ss_pred             --------HHHHHHHHHcCCCceeecCCCc
Q 009523          458 --------TATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       458 --------~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                              .....+.+.++..|+-+.-|+.
T Consensus       378 ~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i  407 (442)
T KOG1404|consen  378 SEPKPPATAEGAVIGEQCKELGVLVGKGGI  407 (442)
T ss_pred             CCCCCcchHHHHHHHHHHHHhCeeeecccc
Confidence                    2345566666666666655543

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.28  E-value=7e-10  Score=116.62  Aligned_cols=249  Identities=14%  Similarity=0.156  Sum_probs=151.8

Q ss_pred             hhHHHHHHHHHhhhCCC--c-E-EEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCCcchHHHHHHhcccCCc-EEEEeCC-
Q 009523          201 PTTVVVEEKMSALEGAE--S-T-VIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGI-TATVIDP-  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~-~-i~~sSG~~Ai~~al~all-~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv-~v~~vd~-  273 (532)
                      ....+.++.|.++++.+  . + ++.+||+.++++++..++ ++||++++.. .|+.  ++..+.++.+|+ ++..++. 
T Consensus        39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~--r~~~eia~~~g~~~v~~l~~~  115 (374)
T TIGR01365        39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK--GWVTDVTKQLKLPDVRVLEAE  115 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH--HHHHHHHHhcCCCCcEEEcCC
Confidence            34556688888888853  2 3 456889999999999999 5898888754 4433  233356777888 4665543 


Q ss_pred             ----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcc
Q 009523          274 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  348 (532)
Q Consensus       274 ----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK  348 (532)
                          .|+++++.  ++ .   |++.+--..||...|++++.+..  +++++|||.+-+.+ .+.+..  ++|+++.|..|
T Consensus       116 ~g~~~~~~~ve~--~~-~---v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--~iDv~~tgsQK  185 (374)
T TIGR01365       116 YGKLPDLKKVDF--KN-D---VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--KLDVVTFSWQK  185 (374)
T ss_pred             CCCCCCHHHcCC--CC-C---EEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--HCcEEEEechh
Confidence                26777762  22 2   33433334579999987666332  58999999994332 222222  49999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHH---------hh----------hc-CCC---ccHHHHHHHHHhHH------HHHH
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNL---------HH----------VL-GGA---LNPNAAYLIIRGMK------TLHL  399 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~---------~~----------~~-G~~---~~~~~a~l~l~~l~------tl~~  399 (532)
                      .++++++  .++++.+++.+++....         ..          .. +.+   ++....+.+...++      .++.
T Consensus       186 ~L~~ppG--ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~  263 (374)
T TIGR01365       186 VLGGEGA--HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKP  263 (374)
T ss_pred             ccCCCCc--eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHH
Confidence            9998863  56777788777654421         00          01 212   22223333333342      2677


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH-----H-----HHHHHHHcCC
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT-----A-----TIKFIDALKI  469 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~-----~-----~~~~l~~L~~  469 (532)
                      +.+++.++++.+.+++++.+.+. + ++   .++.+        ....++.+.++.+..     .     ...|.+.++.
T Consensus       264 ~~~Rh~~~a~~l~~~l~~lg~l~-~-~~---~~~~~--------rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (374)
T TIGR01365       264 LIARADDNLAVLEAFVAKNNWIH-F-LA---ETPEI--------RSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEK  330 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcc-c-CC---CChhh--------cCCCeEEEEeCCccccccccchhhHHHHHHHHHHHH
Confidence            88899999999999999875322 1 11   10111        123456677743211     2     4667777766


Q ss_pred             CceeecCC
Q 009523          470 PYIAPSFG  477 (532)
Q Consensus       470 ~~i~vs~G  477 (532)
                      .++.+..|
T Consensus       331 ~gi~i~~G  338 (374)
T TIGR01365       331 EGVAYDIG  338 (374)
T ss_pred             CCEEEecc
Confidence            56655544

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.26  E-value=9e-10  Score=118.39  Aligned_cols=211  Identities=16%  Similarity=0.188  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc-cCC-CEEEEc-CCCCcchHHHHHH-hcccCCc------EEEE
Q 009523          202 TTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV-PAG-GHIVTT-TDCYRKTRIFIET-VLPKMGI------TATV  270 (532)
Q Consensus       202 ~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all-~~G-d~VIv~-~~~y~~t~~~~~~-~l~~~Gv------~v~~  270 (532)
                      ...+|.++|+++.. .+.+.+++||++|+..+++... -.| .+|+.. ...|++....+.. .....+.      .+..
T Consensus        89 ~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~  168 (431)
T PRK06209         89 IELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVT  168 (431)
T ss_pred             HHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccc
Confidence            33467888888874 4678899999999999988432 134 345554 3334331111100 0000111      1233


Q ss_pred             eCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc------cccccCCcEE
Q 009523          271 IDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSLGADLV  342 (532)
Q Consensus       271 vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~------~~l~~gaDiv  342 (532)
                      ++..|+++|+++++.  .++.+|++|......+..-.+++|.++|++||+++|+||++. ++..      ......+|++
T Consensus       169 ~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~  247 (431)
T PRK06209        169 FRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVPDLS  247 (431)
T ss_pred             cCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCccee
Confidence            456689999998853  258899998876443333348999999999999999999863 2211      1123346775


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHH--HHHH--hh--hcCCCc--cHHHHHHHHHhHHHHHH--HHHHHHHHHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQ--IRNL--HH--VLGGAL--NPNAAYLIIRGMKTLHL--RVQQQNSTALRMA  412 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~--l~~~--~~--~~G~~~--~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la  412 (532)
                      +  ++|.+|++  ..+|++++++++++.  +...  ..  .++.+.  +|..+..++..++.+..  .+++..++.+++.
T Consensus       248 t--~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~  323 (431)
T PRK06209        248 C--FGKALGNG--FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA  323 (431)
T ss_pred             e--ehhhhcCC--cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            5  89999974  357888888888775  2111  11  133333  45666666666665532  2344445555555


Q ss_pred             HHHHh
Q 009523          413 KILEA  417 (532)
Q Consensus       413 ~~L~~  417 (532)
                      +.|++
T Consensus       324 ~~L~~  328 (431)
T PRK06209        324 AGVNE  328 (431)
T ss_pred             HHHHH
Confidence            55543

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.26  E-value=8.2e-10  Score=118.90  Aligned_cols=158  Identities=23%  Similarity=0.332  Sum_probs=122.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      .....+.++..|+.+|+++..+..+|+ .|+..++++++++||.|++++++|.+....    +-..|...+++.+     
T Consensus        69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g----lilaGa~Pvyl~p~~np~  144 (557)
T COG1982          69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG----LILAGATPVYLEPSRNPL  144 (557)
T ss_pred             CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH----HHHcCCceEEecCCCCcc
Confidence            345677899999999999999998888 899999999999999999999999886543    3334666555542     


Q ss_pred             ------CCHHHHHHhhcCC-Ce-eEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC------cccccccCC
Q 009523          274 ------ADMEGLEAALNNN-NV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLGA  339 (532)
Q Consensus       274 ------~dle~Le~al~~~-~t-klV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~------~~~~l~~ga  339 (532)
                            .+.+.+++++.++ .. |++++.+|+ ..|.+.++++|.+.++++++++.+|++.....      +....+.|+
T Consensus       145 ~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~  223 (557)
T COG1982         145 YGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGA  223 (557)
T ss_pred             ccccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCc
Confidence                  2678888877543 34 788887776 67999999999999999999999999954322      222334689


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeC
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGS  364 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~  364 (532)
                      |+++.|.||.+++.+  .+-++-.+
T Consensus       224 ~~~tqS~HK~l~alS--QaS~iHv~  246 (557)
T COG1982         224 DFVTQSTHKLLAALS--QASMIHVK  246 (557)
T ss_pred             eEEEechhhhhhhhh--hhHHHhhC
Confidence            999999999999765  34444443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.24  E-value=1.3e-09  Score=124.54  Aligned_cols=161  Identities=20%  Similarity=0.258  Sum_probs=120.6

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-c--cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          204 VVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-V--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       204 ~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l--~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      -+++..++++.|.+  .+-++..++++.++++++. .  +++++|++++..|+.+...++..++..|++++.++   +++
T Consensus       112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~  188 (939)
T TIGR00461       112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSD  188 (939)
T ss_pred             HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHH
Confidence            34678899999976  4567777776666665553 2  23489999999999998888777888999998875   566


Q ss_pred             HHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC-CCcccccccCCcEEEECCccccCCC--CC
Q 009523          279 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIGGH--ND  355 (532)
Q Consensus       279 Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~-~~~~~~l~~gaDivv~S~sK~lgg~--gd  355 (532)
                      |++.+   ++..|++.+|+ -+|.+.|+++|++++|++|++++++.-... .+...|-++|+||++.+..++.-++  |+
T Consensus       189 l~~~~---~~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GG  264 (939)
T TIGR00461       189 IKKAV---DVFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGG  264 (939)
T ss_pred             HhhcC---CEEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCC
Confidence            76665   37889998887 689999999999999999999999665333 3456788999999988766543311  11


Q ss_pred             cEEEEEEeChHHHHHH
Q 009523          356 VLAGSISGSGKLVTQI  371 (532)
Q Consensus       356 ~~gG~lv~~~~li~~l  371 (532)
                      .-+|++..++++...+
T Consensus       265 P~aG~~a~~~~l~r~l  280 (939)
T TIGR00461       265 PHAAFFAVKDEYNRKM  280 (939)
T ss_pred             CceeeeeecHhhHhhC
Confidence            2378888877665543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.5e-10  Score=115.96  Aligned_cols=185  Identities=17%  Similarity=0.168  Sum_probs=138.4

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHH
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  280 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le  280 (532)
                      ..+-.||+.||+++|.+++++++-|-+++..++.++.+.||.|++......+..    ..++...-.+.++..+|+++++
T Consensus       139 DvHldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~le  214 (467)
T KOG1358|consen  139 DVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLE  214 (467)
T ss_pred             eeecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHH
Confidence            345679999999999999999999999999999999999999999887766544    3334344567788899999998


Q ss_pred             HhhcCCC------------eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc----------ccccC
Q 009523          281 AALNNNN------------VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK----------ALSLG  338 (532)
Q Consensus       281 ~al~~~~------------tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~----------~l~~g  338 (532)
                      ..+.+..            -+.|++|...-++|.+.|+.+|.++..+|...+++|+++..+..-+          .-...
T Consensus       215 rll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~  294 (467)
T KOG1358|consen  215 RLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITD  294 (467)
T ss_pred             HhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccc
Confidence            8775421            3678889999899999999999999999999999999976543211          11124


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHH--HHHHHHhhhcCCCccHHHHHHHHHh
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLV--TQIRNLHHVLGGALNPNAAYLIIRG  393 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li--~~l~~~~~~~G~~~~~~~a~l~l~~  393 (532)
                      +|+++.|+.-.++..    ||+.+|+.-++  +++......+...+.|..+-.+...
T Consensus       295 iDiv~~sm~~alas~----GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~a  347 (467)
T KOG1358|consen  295 IDIVTASMETALASG----GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKA  347 (467)
T ss_pred             eeeeeeccccccccc----CceeecceeeEeeeeccccceeeeccCchhhhhhHHHH
Confidence            689999999888865    57777754322  4444444455556666554444333

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.22  E-value=8.7e-10  Score=116.06  Aligned_cols=238  Identities=19%  Similarity=0.147  Sum_probs=148.6

Q ss_pred             ccccccc-cCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-CCCEEEEc
Q 009523          169 VNTSAYF-FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTT  246 (532)
Q Consensus       169 ~~sst~~-~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~-~Gd~VIv~  246 (532)
                      .+|.|.+ -++.++..+...+   .-.|+  ++|+..+|++.+++++|.+.++.+.+|..+...++..+++ +||++++.
T Consensus        46 LrSDTgT~apS~~m~aAM~~G---DD~Y~--gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~  120 (467)
T TIGR02617        46 LLTDSGTGAVTQSMQAAMMRG---DEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD  120 (467)
T ss_pred             CccCCCCCCCCHHHHHHHHcC---Ccccc--cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhccccccccccc
Confidence            3455665 3666666665542   22344  7899999999999999999999999999999999888888 78877754


Q ss_pred             CC-------CCcchHHHHHHhcccCCcEEEEe--------------C-CCCHHHHHHhhcC---CCeeEEEEeCCCCC-C
Q 009523          247 TD-------CYRKTRIFIETVLPKMGITATVI--------------D-PADMEGLEAALNN---NNVSLFFTESPTNP-F  300 (532)
Q Consensus       247 ~~-------~y~~t~~~~~~~l~~~Gv~v~~v--------------d-~~dle~Le~al~~---~~tklV~lesP~Np-t  300 (532)
                      ..       .|..+..   ......|+.+..+              + ..|+++|+++|++   .++..+.++-.+|- -
T Consensus       121 ~~~~~v~hn~~fett~---g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~G  197 (467)
T TIGR02617       121 RSKMVAFSNYFFDTTQ---GHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAG  197 (467)
T ss_pred             ccccccceEEEEecch---HHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCC
Confidence            43       1222110   1122234443322              1 1289999999975   23344444333343 4


Q ss_pred             CcccC---HHHHHHHHHhCCCEEEEECC--C--C----------CCCccccc----ccCCcEEEECCccccCCCCCcEEE
Q 009523          301 LRCVD---VKLVSDLCHKKGAIVCIDGT--F--A----------TPLNQKAL----SLGADLVLHSATKFIGGHNDVLAG  359 (532)
Q Consensus       301 G~v~d---l~~I~~la~~~gi~lIvDet--~--a----------~~~~~~~l----~~gaDivv~S~sK~lgg~gd~~gG  359 (532)
                      |.+.+   ++++.++|++||++++.|.+  +  +          .......+    ...+|.+..|++|-++.+   +||
T Consensus       198 Gqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vGg  274 (467)
T TIGR02617       198 GQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MGG  274 (467)
T ss_pred             CEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---ccc
Confidence            66776   56888899999999999997  1  1          11111111    146899999999999877   588


Q ss_pred             EEEeChH----HHHHHHHHh------hhcCCCccHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhC
Q 009523          360 SISGSGK----LVTQIRNLH------HVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       360 ~lv~~~~----li~~l~~~~------~~~G~~~~~~~a~l~l~~l~tl--~~r~~~~~~~a~~la~~L~~~  418 (532)
                      +++++++    +.++++...      ..+|+ ++.-+...+..||+..  ...+.......++|.+.|.+.
T Consensus       275 ~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGG-lagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       275 LLCFKDDSFFDVYTECRTLCVVQEGFPTYGG-LEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             eEEecchhHHHHHHHHHhhcccccCCcCcCc-hhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence            9998764    334444322      12333 3333333333455431  223344456678888888775

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.20  E-value=1.4e-08  Score=104.90  Aligned_cols=158  Identities=24%  Similarity=0.384  Sum_probs=121.5

Q ss_pred             HHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHH
Q 009523          206 VEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  280 (532)
Q Consensus       206 Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le  280 (532)
                      +...+++|.|-+  .+=++-.|+++-++++++.   -++..+++++...|+.+...++..++.+|+++..++.+|+++|+
T Consensus       125 fQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~  204 (450)
T COG0403         125 FQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLE  204 (450)
T ss_pred             HHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhh
Confidence            467889999864  4556666775555555544   22357999999999999999988899999999999999999999


Q ss_pred             HhhcCCCeeEEEEeCCCCCCC-cccCHHHHHHHHHhCCCEEEEECC-CCCCCcccccccCCcEEEECCccc-----cCCC
Q 009523          281 AALNNNNVSLFFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF-----IGGH  353 (532)
Q Consensus       281 ~al~~~~tklV~lesP~NptG-~v~dl~~I~~la~~~gi~lIvDet-~a~~~~~~~l~~gaDivv~S~sK~-----lgg~  353 (532)
                      +. .+.++..|+++.|+ -.| ...|+++|.+.+|++|+++++=.- .+-.+...|-++|+||++.+..-+     |||+
T Consensus       205 ~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGP  282 (450)
T COG0403         205 SA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGP  282 (450)
T ss_pred             hc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCc
Confidence            98 54469999999998 567 667799999999999998876322 222344577889999999997763     4544


Q ss_pred             CCcEEEEEEeChHHH
Q 009523          354 NDVLAGSISGSGKLV  368 (532)
Q Consensus       354 gd~~gG~lv~~~~li  368 (532)
                      .   +|+...++++.
T Consensus       283 h---ag~fA~~~~~~  294 (450)
T COG0403         283 H---AGYFAVKDEFK  294 (450)
T ss_pred             c---eeeeeEhHhHh
Confidence            3   78887766553

>PLN02452 phosphoserine transaminase

Probab=99.20  E-value=2.8e-09  Score=111.86  Aligned_cols=244  Identities=11%  Similarity=0.018  Sum_probs=154.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe---C-
Q 009523          201 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI---D-  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v---d-  272 (532)
                      ...++.++.|.++++.+   +++++ +||+.++.+++..++.+||++++....+.+..  +...++++|...+..   + 
T Consensus        52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r--~~~~a~~~g~~~~~~~~~~~  129 (365)
T PLN02452         52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKK--AAKEAKKYCKTNVIASGKDE  129 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCCcEEEecCCC
Confidence            45667788999999863   35555 77789999999999999998877766555533  224556666544333   1 


Q ss_pred             ----CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECC
Q 009523          273 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  346 (532)
Q Consensus       273 ----~~dle~Le~al~~~~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~  346 (532)
                          ..++++++  ..+ +.+.|++++-.-.||.. .|++++.      ++++|+|.+...+ .+++..++|+|+  .|.
T Consensus       130 ~~~~~~~~~~~~--~~~-~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~sa  198 (365)
T PLN02452        130 KYTKIPSVSEWE--LTP-DAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGA  198 (365)
T ss_pred             CCCCCCChHHcC--CCC-CCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--Eec
Confidence                12344432  122 47778775555568884 7777664      3899999996543 345555666644  699


Q ss_pred             ccccCCCCCcEEEEEEeChHHHHHHHHH-------hh--hcC---CCccHHHHHHHHHhHHH------HHHHHHHHHHHH
Q 009523          347 TKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH--VLG---GALNPNAAYLIIRGMKT------LHLRVQQQNSTA  408 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~~--~~G---~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a  408 (532)
                      +|.+|++|   .|+++.++++++++...       ..  ..+   .+++....+.+...++.      +..+.+++.+.+
T Consensus       199 qK~lGP~G---l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a  275 (365)
T PLN02452        199 QKNVGPSG---VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKA  275 (365)
T ss_pred             ccccCCCC---eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999776   67888888887664321       00  001   23344444444444443      344556677888


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP  474 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~v  474 (532)
                      +.+.++|++.+++   +.+..  .+.+        ....+++|.+++. +...+|++.++..|+..
T Consensus       276 ~~l~~~l~~~~G~---y~~~~--~~~~--------rs~~~vsF~~~~~-~~~~~f~~~~~~~g~~~  327 (365)
T PLN02452        276 DLLYDAIDESNGF---YVCPV--EKSV--------RSLMNVPFTLGGS-ELEAEFVKEAAKAGMVQ  327 (365)
T ss_pred             HHHHHHHHhCCCc---ccCCC--ChHH--------hCCeEEEEEcCCc-hhHHHHHHHHHHCCCcc
Confidence            8889999886654   11111  1111        1345889998764 46788999888766443

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.20  E-value=6.4e-09  Score=106.70  Aligned_cols=221  Identities=19%  Similarity=0.196  Sum_probs=145.2

Q ss_pred             CCCCCCCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHhccCC--C------EEEEcCCCCcc-hHHHHHH-
Q 009523          193 FEYGRYGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVPAG--G------HIVTTTDCYRK-TRIFIET-  259 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~---ga~~~i~~sSG~~Ai~~al~all~~G--d------~VIv~~~~y~~-t~~~~~~-  259 (532)
                      |..+-+-.-....|++.|.+..   .++.+.+++||++|+..+|....+..  +      .+|.-..+|++ +...+.. 
T Consensus        90 hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~  169 (433)
T KOG1401|consen   90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT  169 (433)
T ss_pred             eccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh
Confidence            4444433333667788888887   45788999999999999997543321  2      38888888887 3333321 


Q ss_pred             hcccCCc-------EEEEeCCCCHHHHHHhhcCCC--eeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCC
Q 009523          260 VLPKMGI-------TATVIDPADMEGLEAALNNNN--VSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       260 ~l~~~Gv-------~v~~vd~~dle~Le~al~~~~--tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~  326 (532)
                      .-..++.       ++.....+|..++++.++.++  +.+|++|......|.+..    +..|.++|+++|+++|.||++
T Consensus       170 ~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~  249 (433)
T KOG1401|consen  170 GNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ  249 (433)
T ss_pred             cccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh
Confidence            1122222       344445668999999998754  799999999977776653    668999999999999999996


Q ss_pred             CCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcCCC--ccHHHHHHHHHhHHHH
Q 009523          327 ATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGA--LNPNAAYLIIRGMKTL  397 (532)
Q Consensus       327 a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G~~--~~~~~a~l~l~~l~tl  397 (532)
                      ....      .+..+..-.||.+  +.|.++|+  +..|+..+++++.+.+..-.. .+|++  -+|+++..+...++++
T Consensus       250 tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~gG--lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l  325 (433)
T KOG1401|consen  250 TGLGRLGYGWAQEYFGVTPDITT--VAKPLGGG--LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDEL  325 (433)
T ss_pred             hCccccchHHHHHHhCcCCccee--ehhhccCC--ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHH
Confidence            5321      1233334567777  89999976  578888899988888764221 22333  3577777766666665


Q ss_pred             H--HHHHHHHHHHHHHHHHHHh
Q 009523          398 H--LRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       398 ~--~r~~~~~~~a~~la~~L~~  417 (532)
                      .  ..+++..+..+.|.+.|.+
T Consensus       326 ~~~e~~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  326 KDPETLKNVSKIGKELRKLLDE  347 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH
Confidence            3  2333444444444444443

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.18  E-value=8e-09  Score=109.16  Aligned_cols=209  Identities=18%  Similarity=0.217  Sum_probs=128.9

Q ss_pred             HHHHHHHHHhhhCCCcE--EEeCCHH---HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          203 TVVVEEKMSALEGAEST--VIMASGM---SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~--i~~sSG~---~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      .-+++..|+++.|-+-+  =+...++   +|+.++.+.--+.+++|+++...|+.+...++..+...|++++.++.++..
T Consensus       112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~  191 (429)
T PF02347_consen  112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG  191 (429)
T ss_dssp             HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC
T ss_pred             HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC
Confidence            44568999999998642  3444444   444444443333456999999999999888887888899999988754211


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECC--CCCCCcccccccCCcEEEECCccccCCC--
Q 009523          278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSATKFIGGH--  353 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet--~a~~~~~~~l~~gaDivv~S~sK~lgg~--  353 (532)
                      ...   .+ ++.+|++++|| -.|.+.|+++|.+++|++|+++++ .+  -+-.....|-++|+||++.+ +|.||-+  
T Consensus       192 ~~d---~~-~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~  264 (429)
T PF02347_consen  192 TTD---DD-DTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMG  264 (429)
T ss_dssp             SB----ST-TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---C
T ss_pred             Ccc---cc-CeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCC
Confidence            111   34 79999999998 589999999999999999999988 55  22234567889999999877 7776622  


Q ss_pred             -CCcEEEEEEeChHHHHHHHHH-------------------------hh---h--cCCCcc----HHHHHHHHHhHHHHH
Q 009523          354 -NDVLAGSISGSGKLVTQIRNL-------------------------HH---V--LGGALN----PNAAYLIIRGMKTLH  398 (532)
Q Consensus       354 -gd~~gG~lv~~~~li~~l~~~-------------------------~~---~--~G~~~~----~~~a~l~l~~l~tl~  398 (532)
                       |+.-+|++..+++++.++-..                         ++   .  .++...    ....|+...|-+.+.
T Consensus       265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~  344 (429)
T PF02347_consen  265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR  344 (429)
T ss_dssp             CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence             222368888777655443210                         00   0  111111    113445555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhC
Q 009523          399 LRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~  418 (532)
                      ..-++...++.++++.|.+.
T Consensus       345 ~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  345 EIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            66677788999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.01  E-value=6.7e-08  Score=97.75  Aligned_cols=254  Identities=19%  Similarity=0.178  Sum_probs=153.8

Q ss_pred             CCCCCCCC--CchhHHHHH----HHHHhhhCCC---c--EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHH--HH
Q 009523          191 ASFEYGRY--GNPTTVVVE----EKMSALEGAE---S--TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI--FI  257 (532)
Q Consensus       191 ~~~~Y~R~--~~p~~~~Le----~~lA~l~ga~---~--~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~--~~  257 (532)
                      .+|-=.||  ||...+++|    ++--+.++.+   +  .+-.-||+.|+..+..++++|+|+|.--+..+++...  +.
T Consensus        70 EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~  149 (477)
T KOG2467|consen   70 EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ  149 (477)
T ss_pred             cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc
Confidence            34554554  566666553    2222345542   2  3445699999999999999999999888777766321  11


Q ss_pred             HHhcccCCcEEEEe-------CC----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCC
Q 009523          258 ETVLPKMGITATVI-------DP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       258 ~~~l~~~Gv~v~~v-------d~----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~  326 (532)
                      .. -++.-..-+++       ++    .|.|.||+.....++|+|+.-  .+-.-+..|..++.++|.+.|++++.|-++
T Consensus       150 T~-~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG--~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAH  226 (477)
T KOG2467|consen  150 TP-TKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAG--TSAYSRLIDYARFRKIADKVGAYLMADMAH  226 (477)
T ss_pred             cC-CceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEec--cccchhhccHHHHHHHHHhcCceeehhhhh
Confidence            01 11111111111       21    278899887766678888862  234567889999999999999999999995


Q ss_pred             CC-----CCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh---------------HHHHHHHHH--hhhcCC-Ccc
Q 009523          327 AT-----PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNL--HHVLGG-ALN  383 (532)
Q Consensus       327 a~-----~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~---------------~li~~l~~~--~~~~G~-~~~  383 (532)
                      .+     .+..+|+++ +|||..+.||.+-|+.   ||++.-++               ++-+++...  ....|+ .-.
T Consensus       227 ISgLVAA~vipsPFey-~DiVTTTTHKsLRGPR---g~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNh  302 (477)
T KOG2467|consen  227 ISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGPR---GAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNH  302 (477)
T ss_pred             HHHHHhcccCCCcccc-cceeeccccccccCCc---ceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcc
Confidence            43     344567777 8999999999999984   77776432               122333321  112222 111


Q ss_pred             HHHH-HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CH
Q 009523          384 PNAA-YLIIRGM--KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DL  457 (532)
Q Consensus       384 ~~~a-~l~l~~l--~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~  457 (532)
                      ...+ +.++...  ..+....++..+|++.+++.|.++.-  ++..-|..+               .++-+.|..   +.
T Consensus       303 tIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy--~lvtgGTDn---------------HlvLvDLr~~G~dG  365 (477)
T KOG2467|consen  303 TIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGY--KLVTGGTDN---------------HLVLVDLRPKGVDG  365 (477)
T ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCc--eEecCCccc---------------eEEEEeccccCCch
Confidence            2211 1122222  23455667778999999999987532  122223222               266666653   23


Q ss_pred             HHHHHHHHHcC
Q 009523          458 TATIKFIDALK  468 (532)
Q Consensus       458 ~~~~~~l~~L~  468 (532)
                      ..++++++.+.
T Consensus       366 arvE~vle~~~  376 (477)
T KOG2467|consen  366 ARVEKVLELCH  376 (477)
T ss_pred             HHHHHHHHHhh
Confidence            56778887764

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.98  E-value=2.4e-07  Score=96.85  Aligned_cols=242  Identities=12%  Similarity=0.032  Sum_probs=143.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEE-EcCCCCcchHHHHHHhcccCCcEEEEeCC--
Q 009523          201 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIV-TTTDCYRKTRIFIETVLPKMGITATVIDP--  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~-sSG~~Ai~~al~all~~Gd~VI-v~~~~y~~t~~~~~~~l~~~Gv~v~~vd~--  273 (532)
                      ...++.++.|.++++.+   +++++ +||+.+..++...++.+||+++ +....+.+.. +. ..++++| ++..+..  
T Consensus        49 ~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r-~~-~ea~~~g-~v~~~~~~~  125 (364)
T PRK12462         49 SLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRK-AI-GEASRVA-AMRVVWDGA  125 (364)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHH-HH-HHHHhcC-CceEecCcC
Confidence            34566778888889863   35555 4567999999999999999654 3333343332 22 3455565 3443321  


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEEC
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHS  345 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S  345 (532)
                             .+++++  .+.+ +.+.|++++-.-.+|...|     ++.+.+++++|+|.+-... .+++..++  |+++.+
T Consensus       126 ~~~~~~~p~~~~~--~~~~-d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~ag  195 (364)
T PRK12462        126 ASGYRTLPSLAEL--DWDA-RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAH  195 (364)
T ss_pred             CCCCCcCCCHHHh--ccCC-CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEee
Confidence                   133443  1223 4677777554456788876     3333468999999984322 12333344  899999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHH----------hh--hcCCCccHHHHHHHHHhHHHH-------HHHHHHHHH
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNL----------HH--VLGGALNPNAAYLIIRGMKTL-------HLRVQQQNS  406 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~----------~~--~~G~~~~~~~a~l~l~~l~tl-------~~r~~~~~~  406 (532)
                      ..|.+|++|   .++++.+++++++....          ..  ..-.+++.+..|++...++.+       ..+.+++.+
T Consensus       196 sQKnlgP~G---ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~  272 (364)
T PRK12462        196 AQKNLGPAG---VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINAR  272 (364)
T ss_pred             ccccCCCCc---eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999776   56778888777654321          00  111234445555544444433       345567778


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                      .++.+.+++++.++.    |+... .+.+        +.--.+.|.+.+ .+...+|+...+..|+
T Consensus       273 ka~~ly~~id~~~~~----~~~~~-~~~~--------RS~mnv~f~~~~-~~l~~~f~~~a~~~gl  324 (364)
T PRK12462        273 KAAMLYATLDALNEV----IDCHA-HRAA--------RSTMNVAFRFRQ-PRLDTLFKEQSTEAGF  324 (364)
T ss_pred             HHHHHHHHHHhCCCc----ccCCC-Chhh--------cCcceEEEEcCC-HHHHHHHHHHHHHCCC
Confidence            888888999887542    22211 1111        112256777764 4567788888776653

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.98  E-value=1.5e-06  Score=96.49  Aligned_cols=171  Identities=12%  Similarity=0.023  Sum_probs=110.7

Q ss_pred             EEEEcCCCCcchHHHHHHhcccCCc---EEEEeCC-----CCHHHHHHhhcC----C-CeeEEEEeCCCCCCCcccCHHH
Q 009523          242 HIVTTTDCYRKTRIFIETVLPKMGI---TATVIDP-----ADMEGLEAALNN----N-NVSLFFTESPTNPFLRCVDVKL  308 (532)
Q Consensus       242 ~VIv~~~~y~~t~~~~~~~l~~~Gv---~v~~vd~-----~dle~Le~al~~----~-~tklV~lesP~NptG~v~dl~~  308 (532)
                      .++++...|.+...    .+...|+   .++.++.     .|+++|+++|++    . .+-+|+....+-.+|.+-|+++
T Consensus       224 ~vl~s~~aHyS~~K----Aa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~e  299 (608)
T TIGR03811       224 KWLVPQTKHYSWLK----AADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDK  299 (608)
T ss_pred             EEEECCCccHHHHH----HHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHH
Confidence            57777777877543    3334454   2444443     288999888853    1 2455666677788999999999


Q ss_pred             HHHHH---HhCCC--EEEEECCCCCCC---ccc------c----------------------------c--ccCCcEEEE
Q 009523          309 VSDLC---HKKGA--IVCIDGTFATPL---NQK------A----------------------------L--SLGADLVLH  344 (532)
Q Consensus       309 I~~la---~~~gi--~lIvDet~a~~~---~~~------~----------------------------l--~~gaDivv~  344 (532)
                      |+++|   +++|+  +++||++|+...   ..+      |                            +  -..+|-++.
T Consensus       300 I~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItv  379 (608)
T TIGR03811       300 IVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTI  379 (608)
T ss_pred             HHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEe
Confidence            99998   66887  699999988642   111      0                            0  026899999


Q ss_pred             CCccccCCCCCcEEEEE-EeChHHHHHHHH---Hhh--------------hcCCCcc--HHHHHHHHHhH----HHHHHH
Q 009523          345 SATKFIGGHNDVLAGSI-SGSGKLVTQIRN---LHH--------------VLGGALN--PNAAYLIIRGM----KTLHLR  400 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~l-v~~~~li~~l~~---~~~--------------~~G~~~~--~~~a~l~l~~l----~tl~~r  400 (532)
                      .+||++.-+-  .+|++ +.++++.+.+..   +..              ..|...+  ....|+.++.+    +.+...
T Consensus       380 DpHK~g~~Py--~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~  457 (608)
T TIGR03811       380 DPHKMGYIPY--SAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKL  457 (608)
T ss_pred             CcccccccCC--CeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999987664  35544 444544433321   000              1122222  45566666543    457778


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 009523          401 VQQQNSTALRMAKILEAH  418 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~  418 (532)
                      +++..++++++.+.|+++
T Consensus       458 i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       458 IGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            888889999999999884

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.89  E-value=1.4e-06  Score=89.26  Aligned_cols=213  Identities=17%  Similarity=0.144  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHhhh-CCC---------cEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEE
Q 009523          202 TTVVVEEKMSALE-GAE---------STVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  269 (532)
Q Consensus       202 ~~~~Le~~lA~l~-ga~---------~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~  269 (532)
                      ....+.+.++++. |.+         ..+-+.+|+.|+..+..-+  ..+...|.+++|+|+.....    +...|.++.
T Consensus        70 G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~I----f~~aGl~v~  145 (396)
T COG1448          70 GLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAI----FEAAGLEVE  145 (396)
T ss_pred             CcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHH----HHhcCCcee
Confidence            3455666666654 532         2467789999988876654  44566799999999876644    445677776


Q ss_pred             EeC---C----CCHHHHHHhhcCC-CeeEEEE-eCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCC---CCCcccc
Q 009523          270 VID---P----ADMEGLEAALNNN-NVSLFFT-ESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA---TPLNQKA  334 (532)
Q Consensus       270 ~vd---~----~dle~Le~al~~~-~tklV~l-esP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a---~~~~~~~  334 (532)
                      .++   .    .|.+.+.+.|+.- +-.+|++ ...+||||.-..   .++|.++.++.|.+-++|-+|-   .++..+.
T Consensus       146 ~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa  225 (396)
T COG1448         146 TYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDA  225 (396)
T ss_pred             eeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHH
Confidence            554   2    2666666655431 2334444 445799998876   5688899999999999999953   3333222


Q ss_pred             c------ccCC-cEEEECCccccCCCCCcEEEEEEe--ChHHHHH----HHHHhhhcCCCccHHHHHHH----------H
Q 009523          335 L------SLGA-DLVLHSATKFIGGHNDVLAGSISG--SGKLVTQ----IRNLHHVLGGALNPNAAYLI----------I  391 (532)
Q Consensus       335 l------~~ga-Divv~S~sK~lgg~gd~~gG~lv~--~~~li~~----l~~~~~~~G~~~~~~~a~l~----------l  391 (532)
                      .      ..+. -+|+.|+||.||--+.++|++.+.  +.+..++    ++...+..-+.++...+.++          .
T Consensus       226 ~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra  305 (396)
T COG1448         226 YALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRA  305 (396)
T ss_pred             HHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHH
Confidence            1      1122 478999999999888877775554  3344433    33322222222222222221          1


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          392 RGMKTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       392 ~~l~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      .....+...+++..+.++.+.+.|+++
T Consensus       306 ~W~~El~~Mr~Ri~~mR~~lv~~L~~~  332 (396)
T COG1448         306 EWEQELEEMRQRILEMRQALVDALKAL  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            122334444556667777788888763

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.87  E-value=6.3e-07  Score=102.48  Aligned_cols=155  Identities=18%  Similarity=0.248  Sum_probs=111.0

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh--cc-CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          204 VVVEEKMSALEGAE--STVIMASGMSASTVMLLAL--VP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       204 ~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al--l~-~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      -+++..+++|.|-+  .+=++-.++++-++++++.  .+ +..+|++++..|+.+...++..++..|++++.      ++
T Consensus       127 ~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~  200 (954)
T PRK12566        127 LNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DA  200 (954)
T ss_pred             HHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cc
Confidence            34578999999976  4455555554333333332  11 24689999999999998888888899999875      34


Q ss_pred             HHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECC--CCCCCcccccccCCcEEEECCc-----cccC
Q 009523          279 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSAT-----KFIG  351 (532)
Q Consensus       279 Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet--~a~~~~~~~l~~gaDivv~S~s-----K~lg  351 (532)
                      +++.+.+ ++..|++.+|+ -.|.+.|+++|.+++|++|+++|+ .+  .+-.+...|-++|+||++.+..     =.||
T Consensus       201 ~~~~~~~-~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~-~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~G  277 (954)
T PRK12566        201 VDNLAAH-AVFGALLQYPD-THGEIRDLRPLIDQLHGQQALACV-AADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYG  277 (954)
T ss_pred             hhhcCCC-CEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEE-EeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCC
Confidence            4555655 69999999997 689999999999999999998664 33  2223445778899999998643     2445


Q ss_pred             CCCCcEEEEEEeChHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQ  370 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~  370 (532)
                      |+.   +|++..++++..+
T Consensus       278 GP~---ag~~a~~~~~~R~  293 (954)
T PRK12566        278 GPH---AAYFACRDDYKRA  293 (954)
T ss_pred             CCC---eeeeeehHHHHhh
Confidence            553   7888887765544

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.81  E-value=3.1e-07  Score=95.16  Aligned_cols=144  Identities=16%  Similarity=0.230  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHH---HHh-ccCC----CEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALEGAEST-VIMASGMSASTVML---LAL-VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga~~~-i~~sSG~~Ai~~al---~al-l~~G----d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+|++.|.++.|-+.+ +--++|+++=.+-+   ++. -..|    +.+++++-.|+.+..    .+...|.+|+.|+
T Consensus       110 li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA----SAam~G~~VV~V~  185 (496)
T COG1003         110 LIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA----SAAMAGFKVVVVK  185 (496)
T ss_pred             HHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh----hHhhcCceEEEEe
Confidence            456788888988888765 44567775444333   333 2233    579999999987652    3455688888887


Q ss_pred             CC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCCC--CcccccccCCcEEEE
Q 009523          273 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVLH  344 (532)
Q Consensus       273 ~~-----dle~Le~al~~~~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~~--~~~~~l~~gaDivv~  344 (532)
                      .+     |+++|++.+.+ ++.++.+.+||. .|.. .++.+|+++.|++|..|..|.+-.-.  -..+|-+.|.|++=.
T Consensus       186 ~~~~G~VDlddLk~k~~~-~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~Hl  263 (496)
T COG1003         186 CDENGNVDLDDLRAKAED-NLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHL  263 (496)
T ss_pred             cCCCCCccHHHHHHHhcc-ceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEe
Confidence            54     89999999987 799999988883 3433 47999999999999999999983221  135788999999999


Q ss_pred             CCccccC
Q 009523          345 SATKFIG  351 (532)
Q Consensus       345 S~sK~lg  351 (532)
                      -+||.|.
T Consensus       264 NLHKTF~  270 (496)
T COG1003         264 NLHKTFC  270 (496)
T ss_pred             ecccccc
Confidence            9999987

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=98.73  E-value=2.9e-06  Score=86.84  Aligned_cols=157  Identities=16%  Similarity=0.225  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHhhhCC-------CcEEEeCCHH-HHHHHHHHHhc-cCCCEEEEcCCCCcchHHHHHHhcccCCc-EEEE
Q 009523          201 PTTVVVEEKMSALEGA-------ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGI-TATV  270 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga-------~~~i~~sSG~-~Ai~~al~all-~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv-~v~~  270 (532)
                      ..++.+|+.+|++...       .+-|+.|+|. .|+..++..++ .+.+-|+++-|-|+=....+    ..+|. .|.+
T Consensus       113 qGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti----~l~~~~~v~Y  188 (475)
T KOG0258|consen  113 QGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATI----SLLGGTQVPY  188 (475)
T ss_pred             cCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHH----HHhCCcccce
Confidence            4466677888877632       2345666665 88888887764 46788999998886433222    22222 2222


Q ss_pred             -eC-----CCCHHHHHHhhcC----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc----
Q 009523          271 -ID-----PADMEGLEAALNN----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----  333 (532)
Q Consensus       271 -vd-----~~dle~Le~al~~----~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~----  333 (532)
                       .|     ..|.++|++.+++    -+++++++-+|.||||.+..   +++|.++|+++|+.++.||+|-..+...    
T Consensus       189 yLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skF  268 (475)
T KOG0258|consen  189 YLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKF  268 (475)
T ss_pred             eeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcch
Confidence             23     2377888776643    25788888899999999985   7899999999999999999954322111    


Q ss_pred             -----cc-ccC---C----cEEEECCccccCCCCCcEEEEE
Q 009523          334 -----AL-SLG---A----DLVLHSATKFIGGHNDVLAGSI  361 (532)
Q Consensus       334 -----~l-~~g---a----Divv~S~sK~lgg~gd~~gG~l  361 (532)
                           .+ ++|   .    -+.++|.||.+.|--+-+||++
T Consensus       269 hSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm  309 (475)
T KOG0258|consen  269 HSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM  309 (475)
T ss_pred             HhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence                 00 111   2    1567899998876644567876

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.66  E-value=3.4e-06  Score=88.08  Aligned_cols=267  Identities=16%  Similarity=0.245  Sum_probs=161.6

Q ss_pred             HHHHhhcccCCCCCCCCCchhHHHHHHHHH----hhhCC-----------CcEEEeCCHHHHHHHHHHHh-------ccC
Q 009523          182 LIDFKEKRRASFEYGRYGNPTTVVVEEKMS----ALEGA-----------ESTVIMASGMSASTVMLLAL-------VPA  239 (532)
Q Consensus       182 ~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA----~l~ga-----------~~~i~~sSG~~Ai~~al~al-------l~~  239 (532)
                      +.+...+.-+...++...+|...+||..+.    ++++-           ...++.+|.+++...++.+.       .+.
T Consensus        90 ladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~  169 (511)
T KOG0628|consen   90 LADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKS  169 (511)
T ss_pred             HHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhc
Confidence            334444445566778889999999985444    44431           24688888888877776543       122


Q ss_pred             C-----------C-EEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----CHHHHHHhhcCC----CeeEEEEeCCCC
Q 009523          240 G-----------G-HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN----NVSLFFTESPTN  298 (532)
Q Consensus       240 G-----------d-~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~----~tklV~lesP~N  298 (532)
                      +           + .+.+++..|.+..    ..+-..|++.+.++.+     +.+.|+++|++.    -+-.+++-+.. 
T Consensus       170 ~~p~~~e~~~~~~lV~Y~SDqahssve----ka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-  244 (511)
T KOG0628|consen  170 RPPELHESSVLARLVAYCSDQAHSSVE----KACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-  244 (511)
T ss_pred             CCCcccchhhhhhheEEecCcccchHH----HhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-
Confidence            2           1 2344555665533    3334446777766543     577888888652    13334443332 


Q ss_pred             CCCcc--cCHHHHHHHHHhCCCEEEEECCCCCCCcc----cccccC---CcEEEECCccccCCCCCcEEEEEEe------
Q 009523          299 PFLRC--VDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG---ADLVLHSATKFIGGHNDVLAGSISG------  363 (532)
Q Consensus       299 ptG~v--~dl~~I~~la~~~gi~lIvDet~a~~~~~----~~l~~g---aDivv~S~sK~lgg~gd~~gG~lv~------  363 (532)
                      -|+.+  -++.+|..+|+++|++++||++|++....    +.+-.|   +|-+-.-.||++--+-|.-.=|+-.      
T Consensus       245 TT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~  324 (511)
T KOG0628|consen  245 TTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSR  324 (511)
T ss_pred             CccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeee
Confidence            34444  46999999999999999999999864332    222223   4667777888887655443222221      


Q ss_pred             ----ChHHHH--------HHHHHhhhcCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          364 ----SGKLVT--------QIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       364 ----~~~li~--------~l~~~~~~~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                          ++...+        .++.++-.+|-..-.+-.|..+|  |.+.+..+++++.+.++.+-+.+.+-+..+-+.-.  
T Consensus       325 ~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~--  402 (511)
T KOG0628|consen  325 AFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR--  402 (511)
T ss_pred             eeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc--
Confidence                111111        01222223344444556676665  66788888888888888777777665554322211  


Q ss_pred             CCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC
Q 009523          430 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP  470 (532)
Q Consensus       430 ~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~  470 (532)
                                     .=|++.|.+++..+..+.|++++...
T Consensus       403 ---------------~lgLvcFRlk~~N~~ne~Ll~~in~~  428 (511)
T KOG0628|consen  403 ---------------ILGLVCFRLKGDNEINEALLNRLNSS  428 (511)
T ss_pred             ---------------ccceeEEeecCCcHHHHHHHHHHHhc
Confidence                           22589999998767788899888653

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.55  E-value=1.2e-06  Score=91.45  Aligned_cols=216  Identities=16%  Similarity=0.143  Sum_probs=134.7

Q ss_pred             hhHHHHH----HHHHhhhCCCc---EEEeCCHHHHHHHHHHHh---ccC--C---CEEEEcCCCCcchHHHHHHhcccCC
Q 009523          201 PTTVVVE----EKMSALEGAES---TVIMASGMSASTVMLLAL---VPA--G---GHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       201 p~~~~Le----~~lA~l~ga~~---~i~~sSG~~Ai~~al~al---l~~--G---d~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      |....++    ..++.+++++.   ...+++|++++.++.+..   .+.  |   -.++++...|.    .++.+...++
T Consensus       116 p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~----a~eK~a~yf~  191 (491)
T KOG1383|consen  116 PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHA----AFEKAARYFE  191 (491)
T ss_pred             chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHH----HHHHHHhhEE
Confidence            4444444    56677787743   244566778855554422   111  2   13555444443    3455666677


Q ss_pred             cEEEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh-CCCEEEEECCCCCCCcc----c-
Q 009523          266 ITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQ----K-  333 (532)
Q Consensus       266 v~v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~-~gi~lIvDet~a~~~~~----~-  333 (532)
                      ++++.++.+      |+..+.+.+++ +|.+|+.+.|+-|+|.+-|+++|.++.-+ +++++++|.+-+.++..    . 
T Consensus       192 v~l~~V~~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~  270 (491)
T KOG1383|consen  192 VELREVPLDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNE  270 (491)
T ss_pred             EEEEeeeccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCc
Confidence            877777644      89999999998 69999999999999999999999999988 99999999996554331    1 


Q ss_pred             -cccc---CCcEEEECCccccC-CCCCcEEEEEE-eChHHH-HHHHHHhhh----------cCCCcc--HHHHHHHHH--
Q 009523          334 -ALSL---GADLVLHSATKFIG-GHNDVLAGSIS-GSGKLV-TQIRNLHHV----------LGGALN--PNAAYLIIR--  392 (532)
Q Consensus       334 -~l~~---gaDivv~S~sK~lg-g~gd~~gG~lv-~~~~li-~~l~~~~~~----------~G~~~~--~~~a~l~l~--  392 (532)
                       +.++   |..-+..+.|||-- +.|   .|+++ .++++. .++.-....          .|+..+  ...+|..+-  
T Consensus       271 ~~fdFr~p~V~Sisa~~HKYGl~~~G---~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~l  347 (491)
T KOG1383|consen  271 EEFDFRVPGVTSISADGHKYGLAPAG---SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSL  347 (491)
T ss_pred             cccccCCCCceeEeeccceeeeeecC---cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHh
Confidence             2222   33345567899743 333   34444 343332 222111111          122222  234554432  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Q 009523          393 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV  424 (532)
Q Consensus       393 ~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V  424 (532)
                      |-+.....+++..+++..|.+.+++.+++.-+
T Consensus       348 G~eGY~~~~~~ive~~~~l~egie~i~~i~i~  379 (491)
T KOG1383|consen  348 GEEGYRENTQNIVETARKLREGIENIKGIKIV  379 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccccceec
Confidence            44556778888899999999999987665433

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.55  E-value=4.1e-06  Score=85.12  Aligned_cols=271  Identities=14%  Similarity=0.143  Sum_probs=129.9

Q ss_pred             HHHHHHHHHhhh---C-C---CcEEEeCCHH-HHHHHHHHHhccC---C---CEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          203 TVVVEEKMSALE---G-A---ESTVIMASGM-SASTVMLLALVPA---G---GHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       203 ~~~Le~~lA~l~---g-a---~~~i~~sSG~-~Ai~~al~all~~---G---d~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      ..+|++.|-+|.   | +   +.-|++++|+ +.+++++.+|...   .   -+|+...|-|..... ...+++....+.
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~-qt~~f~s~~y~w  123 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPE-QTDFFDSRLYKW  123 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHH-HCCCT-BTTEEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHH-HHHhccccCccc
Confidence            455666666654   4 2   4578888887 8888888887543   1   278888887765432 223343322222


Q ss_pred             EEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCc
Q 009523          269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  347 (532)
Q Consensus       269 ~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~s  347 (532)
                      . -|...   ....-.. .+-+=++++||||.|.+-.     .+++.-+..+|.|=+|.-|.. .-+....-||.++|+|
T Consensus       124 ~-Gda~~---~~~~~~~-~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~S  193 (363)
T PF04864_consen  124 A-GDASN---FKNSDNP-SPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTLS  193 (363)
T ss_dssp             E-EECCC---GTT-S-C-CGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEEHH
T ss_pred             c-ccHHh---hccCCCC-CCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCCCCCCceEEEEEe
Confidence            1 11111   1111111 3456677899999998731     123555677899999765432 1112334589999999


Q ss_pred             cccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--------------RVQQQNSTALRMA  412 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--------------r~~~~~~~a~~la  412 (532)
                      |.-| |.+.+.||.+. ++++.+++...........+-..+.-++.-|+.+-.              -.+...+.-++|.
T Consensus       194 K~TG-HAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~  272 (363)
T PF04864_consen  194 KLTG-HAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLR  272 (363)
T ss_dssp             HHCS--GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             cccC-ccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHH
Confidence            9875 54456666655 456777777655433333343333222222222111              1112223344555


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhc-CCcccEEEEEEcC-CHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDG-DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~-~g~G~~vsf~l~g-~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+....   +..+|.++  |+|.-+-++. ...+..-|+.-.. +.+++..++.+.++.+   .-|             
T Consensus       273 ~~~~~S~---rFSLq~~~--~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~t---r~G-------------  331 (363)
T PF04864_consen  273 AAVSASK---RFSLQKFS--PQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIIT---RSG-------------  331 (363)
T ss_dssp             HHHCCSS---SEEE---S--CEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEE---EEG-------------
T ss_pred             HHHHhcC---ceecCcCC--chhccccccccCCCCCeEEEecCCcccccHHHHHHhCCccc---CCC-------------
Confidence            5554432   23444442  3443222222 3457788888763 2357888887665433   222             


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                               ..+|.+..++|||+--
T Consensus       332 ---------~~fga~~ryVRlSml~  347 (363)
T PF04864_consen  332 ---------VLFGADSRYVRLSMLK  347 (363)
T ss_dssp             ---------GGGTS-TTEEEEESSS
T ss_pred             ---------CccCCCCCeEEEeccC
Confidence                     1245667899999864

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.51  E-value=2e-06  Score=85.11  Aligned_cols=284  Identities=15%  Similarity=0.198  Sum_probs=165.5

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHh----c-ccCCc---EEEEe
Q 009523          203 TVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETV----L-PKMGI---TATVI  271 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~----l-~~~Gv---~v~~v  271 (532)
                      ++..++..+.+-+-+-+++++||++|+.++++-.   .+..| +|+-+..|++.....-++    + +.-++   +.+.+
T Consensus        89 v~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHV  167 (452)
T KOG1403|consen   89 VQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHV  167 (452)
T ss_pred             HHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEe
Confidence            3444444455555567899999999999998743   34445 555667777743221111    0 00111   11111


Q ss_pred             -CC---------------CC-----HHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEE
Q 009523          272 -DP---------------AD-----MEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC  321 (532)
Q Consensus       272 -d~---------------~d-----le~Le~al~~-----~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lI  321 (532)
                       +.               .|     .+.+++.+++     ..+.+.+.|+-.+-.|.+.|    .+++++..+.+|-+.|
T Consensus       168 APcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~I  247 (452)
T KOG1403|consen  168 APCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCI  247 (452)
T ss_pred             cCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEE
Confidence             10               01     2334444421     24667778888888898887    5688888899999999


Q ss_pred             EECCCCCC-------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH----HhhhcCCCccHHHHHHH
Q 009523          322 IDGTFATP-------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----LHHVLGGALNPNAAYLI  390 (532)
Q Consensus       322 vDet~a~~-------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~----~~~~~G~~~~~~~a~l~  390 (532)
                      .||++..+       +.+.....-.|||+  +.|-+|-+.  ..+.++..+++.+.+..    +.+.+|+  +|..++..
T Consensus       248 aDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGNGh--PVa~VattkeIA~Af~atgv~YFNTyGG--nPVsCAv~  321 (452)
T KOG1403|consen  248 ADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNGH--PVAAVATTKEIAQAFHATGVEYFNTYGG--NPVSCAVG  321 (452)
T ss_pred             eehhhhcccccchhhhhhhhhccccchhe--ecccCCCCC--eeeEEeccHHHHHHhccccceehhccCC--CchhHHHH
Confidence            99995432       12233344568887  889887433  46788888888887754    3345555  67777776


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HHHHHHH
Q 009523          391 IRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKF  463 (532)
Q Consensus       391 l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~~~~~~~  463 (532)
                      +.-++...  -+..+++++++.++|+..-+-.+..++.+          ...+|.|.++.++|-.+       ...+..+
T Consensus       322 laVm~v~e--~E~Lq~ha~~vG~~L~~lL~~~k~kh~~I----------GDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~  389 (452)
T KOG1403|consen  322 LAVMRVCE--DENLQEHAQQVGEKLEVLLRRLKQKHECI----------GDVRGVGLFIGIDLVKDRKTRTPDTKEAHWV  389 (452)
T ss_pred             HHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhhhccce----------eccccceEEEeeeeecccccCCCcHHHHHHH
Confidence            66665443  23455666666665543211001122211          12367788888987532       3455667


Q ss_pred             HHHcCCCc-eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEE----EEecCCCHHHHHHHHHHHHh
Q 009523          464 IDALKIPY-IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR----FSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       464 l~~L~~~~-i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IR----lSvG~ed~~dli~dL~~AL~  530 (532)
                      +.+|+... +-.|.-|.                         .++.+.    ++|..|+.++.+..|++.|.
T Consensus       390 v~rlke~y~VLlsaDGP-------------------------h~NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  390 VNRLKELYRVLLSADGP-------------------------HRNILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             HHHHHHhhhEEEecCCC-------------------------CCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence            77776432 44443222                         122222    57788898888888888774

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.12  E-value=4e-05  Score=79.81  Aligned_cols=152  Identities=15%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             CcEEEeCCHH-HHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC--------CCHHHHHHhhcC
Q 009523          217 ESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNN  285 (532)
Q Consensus       217 ~~~i~~sSG~-~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~--------~dle~Le~al~~  285 (532)
                      ..+++++-.+ .++.+.+.++-  ..++.||.+...+.+.+..    ....|.++..++.        .|.+.+++.+++
T Consensus        75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~ka----i~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~  150 (389)
T PF05889_consen   75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKA----IERAGLEPVVVENVLEGDELITDLEAIEAKIEE  150 (389)
T ss_dssp             CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHH----HHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHH
T ss_pred             cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHH----HHhcCCeEEEeeccCCCCeeeccHHHHHHHHHH
Confidence            4567774443 34566666663  4578999998888765533    3445777776662        257777777753


Q ss_pred             --CCeeEEEEeCCCCCCCcccC-HHHHHHHHHhCCCEEEEECCCCCCCc------ccccccC-CcEEEECCccccCCCCC
Q 009523          286 --NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADLVLHSATKFIGGHND  355 (532)
Q Consensus       286 --~~tklV~lesP~NptG~v~d-l~~I~~la~~~gi~lIvDet~a~~~~------~~~l~~g-aDivv~S~sK~lgg~gd  355 (532)
                        .+..+.++.+++--.++..| +++|+++|++||++.++-++|+....      .+....| .|+++.|+-|-|--+. 
T Consensus       151 ~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPv-  229 (389)
T PF05889_consen  151 LGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPV-  229 (389)
T ss_dssp             HCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEES-
T ss_pred             hCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecC-
Confidence              13578888888888899998 99999999999999999999875211      1223343 5899999999665332 


Q ss_pred             cEEEEEEeC-hHHHHHHHHH
Q 009523          356 VLAGSISGS-GKLVTQIRNL  374 (532)
Q Consensus       356 ~~gG~lv~~-~~li~~l~~~  374 (532)
                       .++.+.+. +..+..+...
T Consensus       230 -Ggai~As~~~~~i~~vs~~  248 (389)
T PF05889_consen  230 -GGAIMASFDPSGILAVSKE  248 (389)
T ss_dssp             -SHEEEEESSHHHHHHHHHT
T ss_pred             -CCcEEEecCHHHHHHHHHH
Confidence             13444443 4566666543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.00  E-value=9.8e-05  Score=76.63  Aligned_cols=203  Identities=12%  Similarity=0.120  Sum_probs=124.5

Q ss_pred             CcEEEeCCHHHHHHHHHHHhc---cC-----C-----C-EEEEcCCCCcchHHHHHHhcccCC---cEEEEeCCC-----
Q 009523          217 ESTVIMASGMSASTVMLLALV---PA-----G-----G-HIVTTTDCYRKTRIFIETVLPKMG---ITATVIDPA-----  274 (532)
Q Consensus       217 ~~~i~~sSG~~Ai~~al~all---~~-----G-----d-~VIv~~~~y~~t~~~~~~~l~~~G---v~v~~vd~~-----  274 (532)
                      .+.|+.++|+-++..++....   -|     |     + .+.+++.+|.+...    ....+|   -.+..|+.+     
T Consensus       160 ~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~k----aAa~lg~gtd~c~~v~t~e~Gkm  235 (510)
T KOG0629|consen  160 GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKK----AAAFLGLGTDHCIKVKTDERGKM  235 (510)
T ss_pred             CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHH----HHHHhccCCceeEEecccccCcc
Confidence            468999999855554443221   11     1     2 34455666766443    233333   234445433     


Q ss_pred             CHHHHHHhhcCCC-----eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccccc----c---cCCcEE
Q 009523          275 DMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL----S---LGADLV  342 (532)
Q Consensus       275 dle~Le~al~~~~-----tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l----~---~gaDiv  342 (532)
                      ++++||+.|...+     +-+|-...-+...|..-|++.|+++|++|+.+++||++++.++.....    -   .-+|-|
T Consensus       236 ~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~Sv  315 (510)
T KOG0629|consen  236 IPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSV  315 (510)
T ss_pred             chHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCce
Confidence            6888988774322     334444444567788999999999999999999999999886543221    1   136789


Q ss_pred             EECCccccCCCCCcEEEEEEeCh-HHHHHHHHHh---------------------hhcCCCccHHHHHHHHH--hHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLH---------------------HVLGGALNPNAAYLIIR--GMKTLH  398 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~---------------------~~~G~~~~~~~a~l~l~--~l~tl~  398 (532)
                      ..+.||++|.+-  -.++...+. .+.++..+..                     ...|-....+-.|+..+  |.+.+.
T Consensus       316 twnpHK~~gapl--qCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe  393 (510)
T KOG0629|consen  316 TWNPHKLMGAPL--QCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFE  393 (510)
T ss_pred             eecHHHhhcCcc--hhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHH
Confidence            999999998653  223333222 2333222111                     01233455666777654  455577


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEe
Q 009523          399 LRVQQQNSTALRMAKILEAHPKVKRVH  425 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p~v~~V~  425 (532)
                      ..+++..++++++.+.|++.+....+.
T Consensus       394 ~~v~k~~~lA~yl~~~lrer~~~~~l~  420 (510)
T KOG0629|consen  394 AQVDKCLRLAEYLYDRLREREGFEMLF  420 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccceehh
Confidence            788888899999999998876654443

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.74  E-value=0.00059  Score=69.46  Aligned_cols=178  Identities=16%  Similarity=0.251  Sum_probs=101.3

Q ss_pred             HHHHHHhhcCC-----CeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------Ccc--cccccC
Q 009523          276 MEGLEAALNNN-----NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQ--KALSLG  338 (532)
Q Consensus       276 le~Le~al~~~-----~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------~~~--~~l~~g  338 (532)
                      ++++|+.|.++     .+.+|++|......|.-.-    +..|.+++++||+.+||||++..+      +..  -.+..-
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            56677776432     4789999999988886642    789999999999999999995321      111  123345


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHH--HHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVT--QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~--~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~  416 (532)
                      +|+|.  |||-|-     .||+.. +++++.  ..+.....+|   .|.-..++...++.+.  .+...+|...+.+.|.
T Consensus       335 pD~vT--FSKK~q-----~gGffh-~~~frpn~pYrifNTWmG---dP~k~lll~~vv~~I~--~~~Ll~n~~~vG~~l~  401 (484)
T KOG1405|consen  335 PDVVT--FSKKFQ-----TGGFFH-DEEFRPNEPYRIFNTWMG---DPSKNLLLEEVVQEIK--REDLLNNVAHVGKALL  401 (484)
T ss_pred             cccee--hhhhhh-----cCcccc-CcccCCCchHHHhhhhcC---ChHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            78887  677665     356544 333331  1121111122   3443333333333222  2334455554444433


Q ss_pred             hC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCc
Q 009523          417 AH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       417 ~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      +- ..+ .-.||+.-         ...+|.|-++++..+.+ ..-.+|+..+++.  |+..||+
T Consensus       402 ~gL~~L-q~~~p~~~---------~~~RGrGTF~a~d~ps~-~~Rdk~i~~~~~n--Gv~~GGC  452 (484)
T KOG1405|consen  402 KGLLEL-QAKYPGKI---------NNLRGRGTFIAWDCPSG-SIRDKLILIARLN--GVNLGGC  452 (484)
T ss_pred             HHHHHH-HHhCchhh---------hcccccceEEEEeCCCh-HHHHHHHHHHHHc--Cceeccc
Confidence            21 011 12344421         23467899999999864 4556788777754  5677776

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.70  E-value=0.00041  Score=75.23  Aligned_cols=214  Identities=20%  Similarity=0.215  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhhhCCCc-EEEeCCHHHHHH---HHHHHhc-cCCC----EEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGAES-TVIMASGMSAST---VMLLALV-PAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~-~i~~sSG~~Ai~---~al~all-~~Gd----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...|++.|+++.|-+. ++--+||.++-.   .++++.+ ..|+    .-+++-..|+.+.    ..+...|.+|+.|+.
T Consensus       584 f~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP----ASA~MagmkvvpV~~  659 (1001)
T KOG2040|consen  584 FTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP----ASAAMAGMKVVPVGC  659 (1001)
T ss_pred             HHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh----hhHHhcCCEEEEeec
Confidence            4567888888888765 455577774433   3344443 3443    3566666777654    234556888887764


Q ss_pred             C-----CHHHHHHhhcCC--CeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCC-C-CcccccccCCcEEE
Q 009523          274 A-----DMEGLEAALNNN--NVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFAT-P-LNQKALSLGADLVL  343 (532)
Q Consensus       274 ~-----dle~Le~al~~~--~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~-~-~~~~~l~~gaDivv  343 (532)
                      +     |..+|++..+++  +..++.+..|+. .|.. ..+++++++.|+||--+..|.+-.. . -..+|-+.|+|+.-
T Consensus       660 ~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~H  738 (1001)
T KOG2040|consen  660 DANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCH  738 (1001)
T ss_pred             cCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCcccccccee
Confidence            3     778887776543  578899989984 3444 4699999999999999999998322 1 13578889999998


Q ss_pred             ECCccccCC-CC--CcEEEEEEeChHHHHHHHHHh----------h--------hcCCC--ccHHHHHHHHHhHHHHHHH
Q 009523          344 HSATKFIGG-HN--DVLAGSISGSGKLVTQIRNLH----------H--------VLGGA--LNPNAAYLIIRGMKTLHLR  400 (532)
Q Consensus       344 ~S~sK~lgg-~g--d~~gG~lv~~~~li~~l~~~~----------~--------~~G~~--~~~~~a~l~l~~l~tl~~r  400 (532)
                      --+||.|.- ||  +..+|=+..++.+...+....          .        .+|+.  +...-+|.-+-|.+.+...
T Consensus       739 LNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~a  818 (1001)
T KOG2040|consen  739 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDA  818 (1001)
T ss_pred             ecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchh
Confidence            899998862 22  111233333333322221100          0        11111  1111233333333334433


Q ss_pred             HHHHHHHHHHHHHHHHhCCCc
Q 009523          401 VQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v  421 (532)
                      -+...-|+.+++++|+.|-++
T Consensus       819 s~~AiLNaNYMakRLe~hYki  839 (1001)
T KOG2040|consen  819 SKIAILNANYMAKRLESHYKI  839 (1001)
T ss_pred             hHHHhhhhHHHHHHHhhccce
Confidence            344557889999999998554

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.60  E-value=0.0086  Score=61.69  Aligned_cols=272  Identities=14%  Similarity=0.070  Sum_probs=144.3

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCH-HHHHHHHHHHhccCCCE--EEEcCCCCcchHHHHHHhcccCCcEEEEeC--
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASG-MSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVID--  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG-~~Ai~~al~all~~Gd~--VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd--  272 (532)
                      ....+.++.+.++++.+   +++++.+| +....++...|+..+..  |..  ..|...-  + ...+.++......+  
T Consensus        50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~--g~Ws~~a--~-~eA~~~~~~~~~~~~~  124 (365)
T COG1932          50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDT--GAWSEFA--I-KEAKKVGKQPKLIDAR  124 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEee--eehhHhH--H-HHHHHhcccccccccc
Confidence            34566788899999874   35666555 47888888888865542  333  2332211  1 11222222111111  


Q ss_pred             -----C---CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC-HHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEE
Q 009523          273 -----P---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLV  342 (532)
Q Consensus       273 -----~---~dle~Le~al~~~~tklV~lesP~NptG~v~d-l~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDiv  342 (532)
                           .   .+++.+.  +.+ +...|+.++=..-+|.-.+ ...+   ..  +.++|+|.+-... ..++..  .-|++
T Consensus       125 ~~~~~~~~iP~~~~~~--~~~-~~ayv~~~~NeTi~Gv~v~~~p~~---~~--~~~~v~D~SS~ilsr~iDvs--k~dvi  194 (365)
T COG1932         125 IEEAGYGSIPDLSKWD--FSD-NDAYVHFCWNETISGVEVPELPDI---GS--DGLLVADASSAILSRPIDVS--KYDVI  194 (365)
T ss_pred             eeccCccCCCChhhcc--cCC-CccEEEEecCCcccceEccCCCCC---CC--CceEEEecccHHhcCCCChh--HcceE
Confidence                 1   1233222  222 2333544222223455444 1111   11  2789999883321 112222  34799


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHH--h--------hhcC---CCccHHHHHHHHHhHHHH------HHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H--------HVLG---GALNPNAAYLIIRGMKTL------HLRVQQ  403 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~--~--------~~~G---~~~~~~~a~l~l~~l~tl------~~r~~~  403 (532)
                      ..+..|.+||-|   .++++.++++++++...  .        ...+   .+++.+.-++..-.++++      ....++
T Consensus       195 yagaQKnlGpaG---ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~r  271 (365)
T COG1932         195 YAGAQKNLGPAG---LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEAR  271 (365)
T ss_pred             EEehhhccCccc---eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999887   67888899888776542  0        1112   234444444443344432      344456


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..++++.|.+++++.+.......|...              .--.+.|.+. +.+..+.|+..+...+...--|      
T Consensus       272 n~~ka~~LY~~id~s~fy~~~v~~~~R--------------S~mnV~f~~~-~~~ld~~fv~eae~~gl~~lkG------  330 (365)
T COG1932         272 NQAKAQLLYDWIDKSDFYRNLVAKANR--------------SRMNVTFTLV-DAELDKGFVAEAEAAGLIYLKG------  330 (365)
T ss_pred             HHHHHHHHHHHHHhCCccccccchhhc--------------cceeEEEEcC-cHHHHHHHHHHHHHcCCceecc------
Confidence            668899999999987543322222211              1124677776 3355577777776555322222      


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALH  530 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~  530 (532)
                             |.           . .+-+|+|++    +|+.+.|++-++...+
T Consensus       331 -------hr-----------~-vgGmRasiynA~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         331 -------HR-----------S-VGGLRASIYNAVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             -------cc-----------C-CCceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence                   11           1 233999987    3566666666555443

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.42  E-value=0.047  Score=55.16  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             EEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCc----EEEEeCC----CCHHHHHHhhcCCC-
Q 009523          219 TVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGI----TATVIDP----ADMEGLEAALNNNN-  287 (532)
Q Consensus       219 ~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv----~v~~vd~----~dle~Le~al~~~~-  287 (532)
                      .+-.-||+.|+..+..-+  .-+...|.+++|++......+    +..|.    +..+.+.    .|++.+...|+... 
T Consensus       102 ~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if----~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe  177 (410)
T KOG1412|consen  102 GVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIF----EKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPE  177 (410)
T ss_pred             ceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHH----HHcCCceeeeeeeecCCCceecHHHHHHHHhhCCC
Confidence            455678888877665433  223567999999998765443    44552    2334443    26777766665322 


Q ss_pred             eeEEEEeCC-CCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcccc----------cccCC-cEEEECCccccCC
Q 009523          288 VSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGA-DLVLHSATKFIGG  352 (532)
Q Consensus       288 tklV~lesP-~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~~----------l~~ga-Divv~S~sK~lgg  352 (532)
                      -..+++... +||||.=..   ..+|++..++.+...+.|-+|.+...-++          .+.|. -+|+.||+|-+|-
T Consensus       178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGl  257 (410)
T KOG1412|consen  178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGL  257 (410)
T ss_pred             CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccc
Confidence            234444444 799997654   45777878888999999999544322221          12233 3788999999997


Q ss_pred             CCCcEEE--EEEeChHHHHHHH
Q 009523          353 HNDVLAG--SISGSGKLVTQIR  372 (532)
Q Consensus       353 ~gd~~gG--~lv~~~~li~~l~  372 (532)
                      -+...|-  +++-++..+..+.
T Consensus       258 YneRvGnltvv~~n~a~i~~v~  279 (410)
T KOG1412|consen  258 YNERVGNLTVVVNNPAVIAGVK  279 (410)
T ss_pred             ccccccceEEEecChhHHHHHH
Confidence            7766544  3334555555443

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0098  Score=60.99  Aligned_cols=213  Identities=20%  Similarity=0.190  Sum_probs=123.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC-----CCEEEEcCCCCcchHHHHHHhcccCCcEEEEe--
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----GGHIVTTTDCYRKTRIFIETVLPKMGITATVI--  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~-----Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v--  271 (532)
                      ++.....|++.+.+.+|-+..+-+.-|-.|=+..+..++++     |.+.++..+.|..|.+.-   .+..|..+.-+  
T Consensus        77 gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h---~~~ng~~~~n~~~  153 (471)
T COG3033          77 GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGH---IQINGATPRNVYV  153 (471)
T ss_pred             ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHH---HHhcCCccccccc
Confidence            34457789999999999888888877776666666666554     555666666666654321   12223222111  


Q ss_pred             C-------------CCCHHHHHHhhcC---CCeeEEEEeCCCCC-CCccc---CHHHHHHHHHhCCCEEEEECC-CCCC-
Q 009523          272 D-------------PADMEGLEAALNN---NNVSLFFTESPTNP-FLRCV---DVKLVSDLCHKKGAIVCIDGT-FATP-  329 (532)
Q Consensus       272 d-------------~~dle~Le~al~~---~~tklV~lesP~Np-tG~v~---dl~~I~~la~~~gi~lIvDet-~a~~-  329 (532)
                      +             ..|++.|+++|++   .++..|++.--+|- .|...   .++++.++|++|+++++.|.+ |+.. 
T Consensus       154 ~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENa  233 (471)
T COG3033         154 DEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENA  233 (471)
T ss_pred             cccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhh
Confidence            1             1278999998864   24666666433443 34443   477999999999999999999 4432 


Q ss_pred             Ccccccc----------------cCCcEEEECCccccCCCCCcEEEEEEeChH----HHHHHHHHh------hhcCCCcc
Q 009523          330 LNQKALS----------------LGADLVLHSATKFIGGHNDVLAGSISGSGK----LVTQIRNLH------HVLGGALN  383 (532)
Q Consensus       330 ~~~~~l~----------------~gaDivv~S~sK~lgg~gd~~gG~lv~~~~----li~~l~~~~------~~~G~~~~  383 (532)
                      +.++.-+                .-+|-.+.|+-|----.   +||+++.+++    +...++...      ..+|+..+
T Consensus       234 YFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~G  310 (471)
T COG3033         234 YFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAG  310 (471)
T ss_pred             hhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccHHHHHHHHHhheEeeccccccCcccc
Confidence            1111000                12577777887742211   6899888764    555555322      23344333


Q ss_pred             HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhC
Q 009523          384 PNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       384 ~~~a~l~l~~l~tl--~~r~~~~~~~a~~la~~L~~~  418 (532)
                      -.... +..||+.-  ...++...+..++|++.|++.
T Consensus       311 rdmea-lAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~  346 (471)
T COG3033         311 RDMEA-LAVGLREGVNFDYLAHRVAQVQYLADGLEEA  346 (471)
T ss_pred             hhHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            22222 22344321  122333345568889988875

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0014  Score=71.18  Aligned_cols=137  Identities=20%  Similarity=0.351  Sum_probs=96.5

Q ss_pred             HHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhh
Q 009523          207 EEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL  283 (532)
Q Consensus       207 e~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al  283 (532)
                      ...++++.|-+  .+-+.--|++|-++..++. ..++.++++...+|+.+...++...+.+|++++..+   +++.....
T Consensus       169 QTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---~~~~~~s~  245 (1001)
T KOG2040|consen  169 QTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---IKEADYSS  245 (1001)
T ss_pred             HHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecC---HHHhhccc
Confidence            45677777753  4556667775555444333 455677999999999999888777788888866543   44333322


Q ss_pred             cCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECC-CCCCCcccccccCCcEEEECCccc
Q 009523          284 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       284 ~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet-~a~~~~~~~l~~gaDivv~S~sK~  349 (532)
                       + ++..|++..|. --|.+.|.+++++.+++.|.++++--- .+--+...|-++|+||++.|...+
T Consensus       246 -~-~v~gvlvQYP~-t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF  309 (1001)
T KOG2040|consen  246 -K-DVSGVLVQYPD-TEGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF  309 (1001)
T ss_pred             -c-ceeEEEEEcCC-CCCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence             2 58899998887 579999999999999999988765322 122234567789999999987654

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.07  E-value=0.0018  Score=64.92  Aligned_cols=160  Identities=16%  Similarity=0.214  Sum_probs=113.7

Q ss_pred             HHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCC---EEEEcCCCCcchHHHHHHhcccCCcEEE----EeCCC--
Q 009523          206 VEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGG---HIVTTTDCYRKTRIFIETVLPKMGITAT----VIDPA--  274 (532)
Q Consensus       206 Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd---~VIv~~~~y~~t~~~~~~~l~~~Gv~v~----~vd~~--  274 (532)
                      .-..++.+.|+.  ++-+++|=+.-+..++..+.+|-.   +|+...-.|++-.-.+...++..|+.+.    .+.+.  
T Consensus       116 il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREG  195 (465)
T KOG3846|consen  116 ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREG  195 (465)
T ss_pred             hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccccc
Confidence            345677788873  344555555666777778887753   6899988898866666566666676532    12211  


Q ss_pred             ----CHHHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCc
Q 009523          275 ----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  347 (532)
Q Consensus       275 ----dle~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~s  347 (532)
                          ..+++...|+.+  ...+|++...+-.||...|+.+|...-+..|+++=.|=+++.+ ++.....+|+|+.+....
T Consensus       196 EetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSY  275 (465)
T KOG3846|consen  196 EETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSY  275 (465)
T ss_pred             ccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeee
Confidence                234444444332  4889999889999999999999997667789999999987654 445556789999999999


Q ss_pred             cccCCCCCcEEEEEEeCh
Q 009523          348 KFIGGHNDVLAGSISGSG  365 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~  365 (532)
                      ||++.+.+-+||+.+-.+
T Consensus       276 KYlnaGaGgIgGlFvHek  293 (465)
T KOG3846|consen  276 KYLNAGAGGIGGLFVHEK  293 (465)
T ss_pred             cccccCCCccceeeeehh
Confidence            999876656788777543

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=96.24  E-value=0.28  Score=50.41  Aligned_cols=181  Identities=19%  Similarity=0.199  Sum_probs=103.3

Q ss_pred             ccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhh-hCC------Cc---EEEeCCHHHHHHH--HHHHhccCC
Q 009523          173 AYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL-EGA------ES---TVIMASGMSASTV--MLLALVPAG  240 (532)
Q Consensus       173 t~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l-~ga------~~---~i~~sSG~~Ai~~--al~all~~G  240 (532)
                      .|.+++..+.+....+..-.-+|--..  ...++.+.-+++ +|.      +.   .+-+-||+.|+..  .+.+..-++
T Consensus        69 p~vL~~VrkAE~ql~~~~ldKEYlpI~--Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~  146 (427)
T KOG1411|consen   69 PYVLPSVRKAEQQLASLSLDKEYLPIT--GLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPS  146 (427)
T ss_pred             eeeeHHHHHHHHHHhhhcccchhcccc--chHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccc
Confidence            456666665555443333334554332  234455555554 332      11   2334577755544  444445578


Q ss_pred             CEEEEcCCCCcchHHHHHHhcccCCcEEEEe---CC----CCHHHHHHhhcCC-CeeEEEE-eCCCCCCCcccC---HHH
Q 009523          241 GHIVTTTDCYRKTRIFIETVLPKMGITATVI---DP----ADMEGLEAALNNN-NVSLFFT-ESPTNPFLRCVD---VKL  308 (532)
Q Consensus       241 d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v---d~----~dle~Le~al~~~-~tklV~l-esP~NptG~v~d---l~~  308 (532)
                      ..|.+++|+|+....    .....|+.+.++   +.    .|.+.+.+.+.+. .-..|++ ...+||||.=..   .++
T Consensus       147 ~~I~ip~PTWgNh~~----if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~k  222 (427)
T KOG1411|consen  147 RDIYIPDPTWGNHKN----IFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEK  222 (427)
T ss_pred             cceeecCCcccccCc----cccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHH
Confidence            899999999987553    344556665443   32    2444433333221 1123333 245799997653   668


Q ss_pred             HHHHHHhCCCEEEEECCCCCCCcccc----------cccCCc-EEEECCccccCCCCCcEEE
Q 009523          309 VSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGAD-LVLHSATKFIGGHNDVLAG  359 (532)
Q Consensus       309 I~~la~~~gi~lIvDet~a~~~~~~~----------l~~gaD-ivv~S~sK~lgg~gd~~gG  359 (532)
                      |.++.++.+.+-+.|-+|.++..-+.          .+.|.. +++.|+.|.+|--|...|.
T Consensus       223 i~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa  284 (427)
T KOG1411|consen  223 ISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGA  284 (427)
T ss_pred             HHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccce
Confidence            88889999999999999654322111          122433 6778999999977665443

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=96.09  E-value=0.016  Score=53.50  Aligned_cols=50  Identities=14%  Similarity=0.339  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhh----C--C----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcc
Q 009523          203 TVVVEEKMSALE----G--A----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK  252 (532)
Q Consensus       203 ~~~Le~~lA~l~----g--a----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~  252 (532)
                      ..+|++++|+++    |  .    +++++++++++|+..++.+++.|||.|++++|.|++
T Consensus        94 ~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         94 LANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             cHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            345566666554    4  1    245555555699999999999999999999999974

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=93.89  E-value=0.39  Score=47.56  Aligned_cols=162  Identities=16%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             HHHHHHhhhCC---CcEEEe--CCHHHHHHHHHHHhc--cCCC-EEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          206 VEEKMSALEGA---ESTVIM--ASGMSASTVMLLALV--PAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       206 Le~~lA~l~ga---~~~i~~--sSG~~Ai~~al~all--~~Gd-~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      +.+..-.+.|.   ..++++  .+|| .+.+.+..+.  +|.. -|+-.+..-.+...   . .-..|.+...++.    
T Consensus        62 ~a~~~i~l~glhav~nc~vvpl~tgm-slslc~~s~r~krpkakyiiw~ridqks~~k---s-i~~agfepiiie~i~d~  136 (432)
T KOG3843|consen   62 FAKDAIHLAGLHAVANCFVVPLATGM-SLSLCFLSLRHKRPKAKYIIWLRIDQKSCFK---S-IIHAGFEPIIIENILDG  136 (432)
T ss_pred             HHHHHHHHhhhhhhhceeEEeccccc-cHHHHHHHHhhcCCcccEEEEEecchHHHHH---H-HHhcCCCceeeeccccc
Confidence            33333344553   455555  5666 3445555442  3433 34444433322221   1 1123555554432    


Q ss_pred             ----CCHHHHHHhhcCCCee-EEEEeCCCCC-CCccc-CHHHHHHHHHhCCCEEEEECCCCCCCc------ccccccC-C
Q 009523          274 ----ADMEGLEAALNNNNVS-LFFTESPTNP-FLRCV-DVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-A  339 (532)
Q Consensus       274 ----~dle~Le~al~~~~tk-lV~lesP~Np-tG~v~-dl~~I~~la~~~gi~lIvDet~a~~~~------~~~l~~g-a  339 (532)
                          .|++.+++.+++.... ++.+.+-+.- .-+.. .+++|+.+|..|+++-+|.++|+....      ....+.| +
T Consensus       137 d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~gri  216 (432)
T KOG3843|consen  137 DELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRI  216 (432)
T ss_pred             hHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccH
Confidence                2788888877653233 3333222221 12223 389999999999999999999875321      1112233 5


Q ss_pred             cEEEECCccccCCCCCcEEEEEEe--ChHHHHHHHHHh
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNLH  375 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~--~~~li~~l~~~~  375 (532)
                      |.++.|+-|.|--+   +||.++.  ++.+++.+.+..
T Consensus       217 da~vqsldknf~vp---vggaiia~fk~n~iq~iak~y  251 (432)
T KOG3843|consen  217 DAFVQSLDKNFMVP---VGGAIIAAFKDNFIQEIAKMY  251 (432)
T ss_pred             HHHHHHhhhcceee---cchhHhhHhHHHHHHHHHHhC
Confidence            88999999998755   4676664  456777766543

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=87.10  E-value=1.8  Score=37.50  Aligned_cols=88  Identities=18%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             HHHHHhcccCCcEEEEeCCC-CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCCc
Q 009523          255 IFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN  331 (532)
Q Consensus       255 ~~~~~~l~~~Gv~v~~vd~~-dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~~  331 (532)
                      ..+...+++.|.++.+++.+ +.+++.+.+.+.++++|.+....  +.......++++..++.  ++.+++=+.+.+..+
T Consensus        18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~   95 (121)
T PF02310_consen   18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHATADP   95 (121)
T ss_dssp             HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHH
T ss_pred             HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcCh
Confidence            34455678889999998765 46788777765578888885443  34444567777777775  789998776655444


Q ss_pred             ccccc--cCCcEEEE
Q 009523          332 QKALS--LGADLVLH  344 (532)
Q Consensus       332 ~~~l~--~gaDivv~  344 (532)
                      ...++  .++|.++.
T Consensus        96 ~~~l~~~~~~D~vv~  110 (121)
T PF02310_consen   96 EEILREYPGIDYVVR  110 (121)
T ss_dssp             HHHHHHHHTSEEEEE
T ss_pred             HHHhccCcCcceecC
Confidence            34343  57887764

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=82.27  E-value=6.8  Score=33.91  Aligned_cols=90  Identities=13%  Similarity=0.066  Sum_probs=55.9

Q ss_pred             HHHHHhcccCCcEEEEeCCC-CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC---CCEEEEECCCCCCC
Q 009523          255 IFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK---GAIVCIDGTFATPL  330 (532)
Q Consensus       255 ~~~~~~l~~~Gv~v~~vd~~-dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~---gi~lIvDet~a~~~  330 (532)
                      .++..+++..|.++.+.... .++++.+.+.+.++.+|.++.-.  +.....+.++.+.+++.   ++.+++=.......
T Consensus        17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~   94 (119)
T cd02067          17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRD   94 (119)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHHcCCCCCeEEEECCCCChh
Confidence            44556788889999876543 56777776666578888884432  23335567777777765   56666655433322


Q ss_pred             cccccccCCcEEEECC
Q 009523          331 NQKALSLGADLVLHSA  346 (532)
Q Consensus       331 ~~~~l~~gaDivv~S~  346 (532)
                      .......|+|.++...
T Consensus        95 ~~~~~~~G~D~~~~~~  110 (119)
T cd02067          95 FKFLKEIGVDAYFGPA  110 (119)
T ss_pred             HHHHHHcCCeEEECCH
Confidence            2233456888877543

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	532
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		0.0
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		3e-78
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		3e-77
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		3e-77
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		7e-77
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		2e-76
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		2e-70
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		6e-70
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-69
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		3e-69
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		2e-64
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		2e-62
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		7e-62
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		6e-60
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		8e-60
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-59
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		1e-58
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		3e-57
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		3e-57
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		4e-57
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		8e-57
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		3e-44
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		3e-44
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		2e-39
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		6e-39
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		7e-39
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		3e-38

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/422 (84%), Positives = 391/422 (92%), Gaps = 5/422 (1%)
Query: 115 DDIALVDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVN 170
           +D+ALV+      +NVQ ++L  +K  ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVN
Sbjct: 25  EDVALVENETCNDQNVQFDSLPSMK-YASFLNSDGSVAIHAGERLGRGIVTDAITTPVVN 83
Query: 171 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSAST 230
           TSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST++MASGM AST
Sbjct: 84  TSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCAST 143
Query: 231 VMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSL 290
           VMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+  LE ALN   V+L
Sbjct: 144 VMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNL 203
Query: 291 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFI 350
           FFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFATPLNQKAL+LGADLVLHSATKF+
Sbjct: 204 FFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFL 263
Query: 351 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 410
           GGHNDVLAG ISG  KLV++IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR
Sbjct: 264 GGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 323
Query: 411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP 470
           MA+ILEAHPKV+ V+YPGL+SHPEHHIA +QMTGFGG VSFEVDGDL  T KF+DALKIP
Sbjct: 324 MAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP 383
Query: 471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 530
           YIAPSFGGCESIVDQPAIMSYWDLSQS+R KYGIMDNLVRFSFGVEDF+DLKAD+LQAL 
Sbjct: 384 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALD 443
Query: 531 AI 532
           +I
Sbjct: 444 SI 445

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  289 bits (739), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 233/383 (60%), Gaps = 5/383 (1%)
Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINV 131
Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 386
           P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFN 250
Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           G++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 507 NLVRFSFGVEDFEDLKADVLQAL 529
            L+R S G+ED ED+  D+  A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 232/383 (60%), Gaps = 5/383 (1%)
Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 386
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           G++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 507 NLVRFSFGVEDFEDLKADVLQAL 529
            L+R S G+ED ED+  D+  A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 232/383 (60%), Gaps = 5/383 (1%)
Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 386
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           G++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 507 NLVRFSFGVEDFEDLKADVLQAL 529
            L+R S G+ED ED+  D+  A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  284 bits (727), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 231/383 (60%), Gaps = 5/383 (1%)
Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
             +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 386
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           G++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 507 NLVRFSFGVEDFEDLKADVLQAL 529
            L+R S G+ED ED+  D+  A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 230/383 (60%), Gaps = 5/383 (1%)
Query: 149 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 208
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 209 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 268
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 328
             +D    E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAGKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 329 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 386
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+  G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           G++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 507 NLVRFSFGVEDFEDLKADVLQAL 529
            L+R S G+ED ED+  D+  A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 224/388 (57%), Gaps = 17/388 (4%)
Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +LAIH G+       T A+  P+  TS Y      E           FEY R  NPT   
Sbjct: 22  TLAIHGGQSPDPS--TGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRFA 71
Query: 206 VEEKMSALEGAESTVIMASGMSA-STVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPK 263
            E  ++ALEG       ASGM+A STVM   L+ AG H+V   D Y  T R+F       
Sbjct: 72  YERCVAALEGGTRAFAFASGMAATSTVM--ELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129
Query: 264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 323
            G+  + +D  D    +AA+  +   + + E+PTNP L+ VD+  ++ +  K G +  +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRADT-KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--SISGSGKLVTQIRNLHHVLGGA 381
            TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G   +  + +L  Q+  L + +GG 
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248
Query: 382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 441
             P  ++L +RG+KTL LR++     AL +A+ LE HP +++V YPGL SHP+H +A +Q
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308
Query: 442 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 501
           M+GFGG+VS  + G   A  +F +  ++  +A S GG ES+V+ PA+M++  +  + R +
Sbjct: 309 MSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQ 368
Query: 502 YGIMDNLVRFSFGVEDFEDLKADVLQAL 529
            GI D LVR S G+ED  DL+ D+ +AL
Sbjct: 369 LGISDALVRLSVGIEDLGDLRGDLERAL 396

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  261 bits (668), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 3/371 (0%)
Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 343 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           +HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A 
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325
Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
            +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385
Query: 521 LKADVLQALHA 531
           L ADV QAL A
Sbjct: 386 LLADVQQALKA 396

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  260 bits (664), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 3/371 (0%)
Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 343 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           +HSAT ++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A 
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325
Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
            +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385
Query: 521 LKADVLQALHA 531
           L ADV QAL A
Sbjct: 386 LLADVQQALKA 396

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  259 bits (662), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 3/371 (0%)
Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 222
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 282
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 283 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 342
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 343 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           +HSAT ++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           + +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A 
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325
Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
            +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385
Query: 521 LKADVLQALHA 531
           L ADV QAL A
Sbjct: 386 LLADVQQALKA 396

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  243 bits (621), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 212/369 (57%), Gaps = 4/369 (1%)
Query: 167 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 226
           P+  TS + F    +  +    + + + Y R GNPT   +E K++ LE  E+ V  +SGM
Sbjct: 28  PIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM 87
Query: 227 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 286
            A    +L ++ AG H+++    Y  T    E  L K GI    I+ A    ++  +  N
Sbjct: 88  GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
Query: 287 NVSLFFTESPTNPFLRCVDVKLVSDLCH-KKGAIVCIDGTFATPLNQKALSLGADLVLHS 345
              ++F E+P NP L+ +D++ V    H ++G +V  D TF +P+    +  G D+V+HS
Sbjct: 148 TKIVYF-ETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 346 ATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 403
           ATK+I GH DV+AG I G   L+ QIR   +  + G  ++P+ A+LI RG+ TL++R++ 
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKF 463
           ++  A+++A+ L++HP V++V+YPG + H  H IA +QM  +G +++F +        K 
Sbjct: 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL 326
Query: 464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKA 523
           +D LK+  +A S GGCES++  PA M++  + + ER   GI D ++R S G+ED ++L A
Sbjct: 327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIA 386
Query: 524 DVLQALHAI 532
           D  Q L A+
Sbjct: 387 DFKQGLDAL 395

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 203/364 (55%), Gaps = 3/364 (0%)
Query: 167 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 226
           P+  TS + F  T +  D    +     Y R GNPT    EE + ++EGA  +    SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 227 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 286
            A +   LA +  G H++     Y  T       LP+ GI   +ID +D+E ++AA   N
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 287 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 346
              + + ESP NP  +  D+K ++ +CH++GA + +D TF +P   K L LGAD+ LHS 
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 347 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 405
           +K+I GH DV+ G S + + + +  I+      G  + P  A+L  RGMKTL +R+Q   
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID 465
              L++AK LE H K+ +V++PGL+S P H IA +QMTG+G    FE+     A  K ++
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-SFEAAKKLME 322
Query: 466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 525
            LK+  +A S G  +++++ PA M++  + ++   K GI   LVR S G+E+ +D+ AD+
Sbjct: 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADL 382
Query: 526 LQAL 529
            QAL
Sbjct: 383 KQAL 386

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  234 bits (598), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 202/364 (55%), Gaps = 3/364 (0%)
Query: 167 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 226
           P+  TS + F  T +  D    +     Y R GNPT    EE + ++EGA  +    SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 227 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 286
            A +   LA +  G H++     Y  T       LP+ GI   +ID +D+E ++AA   N
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 287 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 346
              + + ESP NP  +  D+K ++ +CH++GA + +D TF +P   K L LGAD+ LHS 
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 347 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 405
           + +I GH DV+ G S + + + +  I+      G  + P  A+L  RGMKTL +R+Q   
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID 465
              L++AK LE H K+ +V++PGL+S P H IA +QMTG+G    FE+     A  K ++
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-SFEAAKKLME 322
Query: 466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 525
            LK+  +A S G  +++++ PA M++  + ++   K GI   LVR S G+E+ +D+ AD+
Sbjct: 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADL 382
Query: 526 LQAL 529
            QAL
Sbjct: 383 KQAL 386

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  228 bits (581), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 141/386 (36%), Positives = 229/386 (59%), Gaps = 13/386 (3%)
Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
           AIH G+   +   + A+  P+  ++   FK+ A        + + FEY R GNPT   +E
Sbjct: 23  AIHVGQDPEQW-TSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 73
Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
           + ++AL+GA+  +  ASG++A TV +  L+ AG  I+   D Y  T  +   V  + G+ 
Sbjct: 74  KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132
Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 326
            + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+  +D TF
Sbjct: 133 ISFVDCSKIKLLEAAITPET-KLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 191
Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 385
            +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S     L  ++R L + LG   +P 
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 251
Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
             YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q TG 
Sbjct: 252 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 311
Query: 446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
            G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +++R   GI 
Sbjct: 312 TGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGIS 371
Query: 506 DNLVRFSFGVEDFEDLKADVLQALHA 531
           D L+R S G+ED EDL  D+ QAL A
Sbjct: 372 DTLIRLSVGLEDEEDLLEDLDQALKA 397

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  228 bits (580), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/386 (36%), Positives = 229/386 (59%), Gaps = 13/386 (3%)
Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
           AIH G+   +   + A+  P+  ++   FK+ A        + + FEY R GNPT   +E
Sbjct: 27  AIHVGQDPEQ-WTSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 77
Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
           + ++AL+GA+  +  ASG++A TV +  L+ AG  I+   D Y  T  +   V  + G+ 
Sbjct: 78  KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 136
Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 326
            + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+  +D TF
Sbjct: 137 ISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 195
Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 385
            +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S     L  ++R L + LG   +P 
Sbjct: 196 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 255
Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
             YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q TG 
Sbjct: 256 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 315
Query: 446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
            G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +++R   GI 
Sbjct: 316 TGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGIS 375
Query: 506 DNLVRFSFGVEDFEDLKADVLQALHA 531
           D L+R S G+ED EDL  D+ QAL A
Sbjct: 376 DTLIRLSVGLEDEEDLLEDLDQALKA 401

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 207/365 (56%), Gaps = 12/365 (3%)
Query: 162 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 221
           DA++TP+  T+   FK+ + +          ++Y R GNPT   +E  ++ L+ A+    
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153
Query: 222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 281
             SGM+A +  +  L+  G  IV   D Y  +   +  V+P+ G+    ++   ++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAA 212
Query: 282 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 341
           A+      L + ESPTNP  +  D++ +S++ H +GA+V +D +  +P+  + L LGAD+
Sbjct: 213 AIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 342 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 400
           V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331
Query: 401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 460
           +++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   Q  G G V SF + G +  +
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALS 390
Query: 461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 520
              ++  K   IA SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +D
Sbjct: 391 KHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDD 450
Query: 521 LKADV 525
           L +D+
Sbjct: 451 LISDL 455

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 205/368 (55%), Gaps = 14/368 (3%)
Query: 171 TSAYFFKKTAELIDFKEKRRAS----FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 226
           TS Y +   A      EK  A     + Y RYGNPT  V EE++  +EGA +    ASGM
Sbjct: 51  TSGYVYGSAA----VAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGM 106
Query: 227 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 286
           +A    L AL+ AG  +V     +    +    +LP+ G+    +D  D+   E AL+  
Sbjct: 107 AAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVP 166
Query: 287 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 346
             ++FF E+P+NP    VD+  V++L H  GA V +D  FATPL Q+   LG D+V++S 
Sbjct: 167 TQAVFF-ETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSG 225
Query: 347 TKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 405
           T  I G   VL G+I G  + +   ++ L    G A++   A+++++G++TL +RVQ  N
Sbjct: 226 TXHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSN 285
Query: 406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD--GDLTATIKF 463
           ++A R+A+ L  HP V+ V YP L SHP++ +A +QM+G G VV+F +D   D+     F
Sbjct: 286 ASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAF 345
Query: 464 --IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL 521
             +D +++  I+ + G  +S+V  PA  ++  +    R   G+ D +VR S G+ED +DL
Sbjct: 346 EVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDL 405
Query: 522 KADVLQAL 529
            AD+ +AL
Sbjct: 406 IADIDRAL 413

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  219 bits (559), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 205/383 (53%), Gaps = 14/383 (3%)
Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
           AIH+G R      T A+  P+  +S +       L       R  +EY R GNPT   +E
Sbjct: 22  AIHSGYR--PDPATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTALE 72
Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
             ++A+E A      +SGM+A+   L A++  G H+V   D Y  T   I+ V     + 
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132
Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 327
            T +  AD++ + AA+      L + E+PTNP L   D+  ++ L     A V +D TFA
Sbjct: 133 YTPVALADLDAVRAAIRPTT-RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFA 191
Query: 328 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNA 386
           +P  Q+ LSLGAD+VLHS T +IGGH+DV+ G+ ++   +L      L +  G    P  
Sbjct: 192 SPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFD 251
Query: 387 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 446
           AYL +RG+KTL LR+Q+ +  A  +A+ L  HP +  V YPGL SHP H +A +QM GFG
Sbjct: 252 AYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFG 311
Query: 447 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 506
           G+VS  +    TA  +      I  +A S G  ES+++ P+ M++   + S+     + D
Sbjct: 312 GMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQ---LEVPD 368
Query: 507 NLVRFSFGVEDFEDLKADVLQAL 529
           +LVR S G+ED  DL  D+ QAL
Sbjct: 369 DLVRLSVGIEDVADLLDDLKQAL 391

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  219 bits (558), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/390 (34%), Positives = 217/390 (55%), Gaps = 21/390 (5%)
Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 207
           AIHAGE +    V  ++  P+  ++ +     A  I        ++EY R  NP    +E
Sbjct: 12  AIHAGEHVD---VHGSVIEPISLSTTFKQSSPANPI-------GTYEYSRSQNPNRENLE 61
Query: 208 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 267
             ++ALE A+  +  +SG SA+T  +L  +P G H V+  D Y  T  +   V    G+ 
Sbjct: 62  RAVAALENAQYGLAFSSG-SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 268 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IVCID 323
            +  +  D+      L   N  L + E+PTNP L+  D++ V+DL  K  A    I+ +D
Sbjct: 121 TSFTN--DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 382
            TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G   
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP 238
Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQ 441
           +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A  + V  V+YPGLK+HP + +  +Q
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298
Query: 442 MTGF--GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER 499
                 GG++SF + G   A  KF  + ++  +A S GG ES+++ PA+M++  + +  R
Sbjct: 299 HRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAR 358
Query: 500 LKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
              G+ D+LVR S G+ED +DL  D+ QAL
Sbjct: 359 EASGVFDDLVRISVGIEDTDDLLEDIKQAL 388

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  219 bits (557), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 188/327 (57%), Gaps = 5/327 (1%)
Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K G
Sbjct: 3   LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK-LVSDLCHKKGAIVCIDG 324
           +    ID A    +E  L  N   ++F E+P NP L+ +D++  V     +K  +V +D 
Sbjct: 63  VEVDFIDMAVPGNIEKHLKPNTRIVYF-ETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121
Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGAL 382
           TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ ++++  +  + G  +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181
Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 442
           +P+ A+LI RG  TL +RV++    A ++A+ L  H  VK+V+YPGL  HP H IA +QM
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241
Query: 443 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 502
             FG +++F+VDG L    K +D   +  +A S GG ES++  PA M++  + + ER   
Sbjct: 242 KMFGSMIAFDVDG-LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAA 300
Query: 503 GIMDNLVRFSFGVEDFEDLKADVLQAL 529
           G+ DNL+R S G E+ +D+  D+ QAL
Sbjct: 301 GLTDNLIRLSVGCENVQDIIDDLKQAL 327

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  218 bits (554), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 200/372 (53%), Gaps = 16/372 (4%)
Query: 164 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 223
           +  P+  +S Y F        F E R  + +Y R GNPT  VV+  ++ LEG    V+  
Sbjct: 23  VVPPIHLSSTYNFTG------FNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 283
           +GMSA  ++    +  G  +V   DCY  +    +++  +       +D  D + L AAL
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 284 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 343
                 L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVL 193
Query: 344 HSATKFIGGHNDVLAGS-ISGSGKLVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHL 399
           HS T ++ GH+DV+AG  I+    +VT++    N   V GGA +   +YL++RG++TL  
Sbjct: 194 HSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250
Query: 400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 459
           R++     A  + K L+  P VK++++P L  +  H IA +Q  GFG ++SFE+DGD   
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQT 310
Query: 460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 519
             +F+  L +  +A S GG ES++   A M++  ++   R   GI + L+R S G+ED E
Sbjct: 311 LRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGE 370
Query: 520 DLKADVLQALHA 531
           DL AD+     A
Sbjct: 371 DLIADLENGFRA 382

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 196/391 (50%), Gaps = 23/391 (5%)
Query: 160 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 219
           V  A+ TPV + +A+ F+ + E+      R     Y R  NPT   +E+++  L GA   
Sbjct: 41  VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGV 100
Query: 220 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 279
           + + SGM+A +  +L L  AG  +VTT   +  T    +  LP  GI    +D  D   +
Sbjct: 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160
Query: 280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 339
           E A +     L F E+ +NP L+  D++ +S + H KG  + +D T   P   +A  LG 
Sbjct: 161 EHACDETT-KLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 340 DLVLHSATKFIGGHNDV------------------LAGSISGSGKLVTQIRNLHHV---L 378
           D+ + S+TKFI G                      LA   + +G +    +    V   L
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 379 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 438
           G +L+P+ AYL   G++T+ LR+++    A  +A  L + P+VK V++P L   P + IA
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 439 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 498
            +Q    G +++FE++    A+ +F+DALK+   A +    +S++  P  + Y   S  E
Sbjct: 340 KRQFRYAGSILTFELESK-EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEE 398
Query: 499 RLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
           RLK  I   ++R S G+E+ EDLK D+LQAL
Sbjct: 399 RLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 200/418 (47%), Gaps = 36/418 (8%)
Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +L +HAG       ++  +  P+  T++Y FK      +    +     Y R  NPT  V
Sbjct: 5   TLQLHAGYEPEPTTLSRQV--PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62
Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L ++G
Sbjct: 63  LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122
Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           I        +      AL +     ++ ES  NP L   D++ ++    +KG  + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182
Query: 326 FATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 375
           F       + L+ GA LV HS TK++GGH  V+AG+I   G          L+T+ +  +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242
Query: 376 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 412
           H L                       G AL P  A++++ GM+TL LR ++     L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302
Query: 413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEVDGDLTATIKFIDALKIPY 471
             L   P+V  V+YPGL  HP H  A +   G  G V++F + G   A  +FI  LK+  
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLIS 362
Query: 472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
              + G   ++   PA  ++  LS  E+ + G+   +VR S G+E  EDLKA++ +AL
Sbjct: 363 HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 204/402 (50%), Gaps = 40/402 (9%)
Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE---YGRYGNPTTVVVEEKMSALEGAEST 219
           A+  P+   +AY FK   E     ++R A+ E   Y R  +PT   +EE++ ALEGA   
Sbjct: 19  AVGLPIYAVAAYGFKTLEE----GQERFATGEGYVYARQKDPTAKALEERLKALEGALEA 74
Query: 220 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 279
           V++ASG +A+   LLAL+  G  +V     + +T      VL  MG+T   +DP + E +
Sbjct: 75  VVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAV 133
Query: 280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLG 338
             AL+    ++ F E+  NP L   D++ ++ L  + G  + +D TF A     + L+ G
Sbjct: 134 REALSAKTRAV-FVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 339 ADLVLHSATKFIGGHNDVLAGSISG-----------------SGKLVTQ----------I 371
           A +V+ S T +  GH  VL G++                    G++  +          +
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 372 RNLHHVLGG-ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 430
           R L   L G AL+P  AYL+ +G++T+ LRV + + TA  +A+ L+ HPKVK + YPGL 
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 431 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 490
             P H  A + +   G +++ ++ GDL    +F+ A+++   A + G   +++  P   +
Sbjct: 313 EDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRL-LKAANLGDARTLLVHPWTTT 370
Query: 491 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           +  L +  RL+ G+   LVR S G+ED  DL A   +AL A+
Sbjct: 371 HSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEAV 412

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 186/371 (50%), Gaps = 14/371 (3%)
Query: 163 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE--YGRYGNPTTVVVEEKMSALEGAESTV 220
           A+ + +   S+  F  + E      + RA+ E  YGR G  T   +++ M  LEG    V
Sbjct: 43  AVNSVIQRASSLVFD-SVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCV 101
Query: 221 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 280
           +   G +A    +LA +  G H++ T   Y  ++ F   +L K+G+T +  DP     + 
Sbjct: 102 LFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIV 161
Query: 281 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLG 338
             L  N   + F ESP +  +   DV  +          AI+ ID T+A  +  KAL  G
Sbjct: 162 KHLQPNT-KIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFG 220
Query: 339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 398
            D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++ + AY+  RG++TL 
Sbjct: 221 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG 280
Query: 399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT 458
           +R++Q + ++L++A+ L  HP+V RV++P L     H    +  TG  G+ SF +   L 
Sbjct: 281 VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN 340
Query: 459 --ATIKFIDALKIPYIAPSFGGCESIV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 514
                 ++D   +  +A S+GG ES++  +QP  ++    +   + +      L+R   G
Sbjct: 341 NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIA----AIRPQGEIDFSGTLIRLHIG 396
Query: 515 VEDFEDLKADV 525
           +ED +DL AD+
Sbjct: 397 LEDVDDLIADL 407

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  158 bits (400), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 177/346 (51%), Gaps = 13/346 (3%)
Query: 188 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 245
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 246 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 305
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 306 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 363
           V  +          AI+ ID T+A  +  KAL  G D+ + +ATK++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 225
Query: 364 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 423
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++A+ L  HP+V R
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 285
Query: 424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCES 481
           V++P L     H    +  TG  G+ SF +   L       ++D   +  +A S+GG ES
Sbjct: 286 VNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYES 345
Query: 482 IV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 525
           ++  +QP  ++    +   + +      L+R   G+ED +DL AD+
Sbjct: 346 LILANQPEHIA----AIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 387

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 176/346 (50%), Gaps = 13/346 (3%)
Query: 188 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 245
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 246 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 305
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 306 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 363
           V  +          AI+ ID T+A  +  KAL  G D+ + +AT ++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVC 225
Query: 364 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 423
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++A+ L  HP+V R
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 285
Query: 424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCES 481
           V++P L     H    +  TG  G+ SF +   L       ++D   +  +A S+GG ES
Sbjct: 286 VNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYES 345
Query: 482 IV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 525
           ++  +QP  ++    +   + +      L+R   G+ED +DL AD+
Sbjct: 346 LILANQPEHIA----AIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 387

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	532
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	0.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-154
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-153
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-152
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-152
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-149
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-148
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-147
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-146
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-145
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-144
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	1e-141
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-138
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-135
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	2e-99
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	1e-94
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	4e-93
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	1e-61
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	3e-61
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	5e-55
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	4e-50
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	7e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	1e-04
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	1e-04
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	2e-04
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	7e-04

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  575 bits (1484), Expect = 0.0
 Identities = 357/440 (81%), Positives = 391/440 (88%), Gaps = 9/440 (2%)

Query: 102 SAAATAASAITSGDDIALVDGLKNVQLEALADLK---------NEASFLSSDGSLAIHAG 152
            AAA AA+AI   D   + + +  V+ E   D             ASFL+SDGS+AIHAG
Sbjct: 6   DAAAAAAAAIAPVDTTVVNEDVALVENETCNDQNVQFDSLPSMKYASFLNSDGSVAIHAG 65

Query: 153 ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSA 212
           ERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+EEK+SA
Sbjct: 66  ERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISA 125

Query: 213 LEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 272
           LEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITATVID
Sbjct: 126 LEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVID 185

Query: 273 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ 332
           PAD+  LE ALN   V+LFFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFATPLNQ
Sbjct: 186 PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ 245

Query: 333 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 392
           KAL+LGADLVLHSATKF+GGHNDVLAG ISG  KLV++IRNLHH+LGGALNPNAAYLIIR
Sbjct: 246 KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIR 305

Query: 393 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 452
           GMKTLHLRVQQQNSTALRMA+ILEAHPKV+ V+YPGL+SHPEHHIA +QMTGFGG VSFE
Sbjct: 306 GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFE 365

Query: 453 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 512
           VDGDL  T KF+DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS+R KYGIMDNLVRFS
Sbjct: 366 VDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFS 425

Query: 513 FGVEDFEDLKADVLQALHAI 532
           FGVEDF+DLKAD+LQAL +I
Sbjct: 426 FGVEDFDDLKADILQALDSI 445

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  445 bits (1146), Expect = e-154
 Identities = 146/388 (37%), Positives = 232/388 (59%), Gaps = 5/388 (1%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
             +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +
Sbjct: 12  QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 69

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           E+K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI
Sbjct: 70  EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 129

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF
Sbjct: 130 NVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 188

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 384
            +P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 248

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
             A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+ 
Sbjct: 249 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSL 308

Query: 445 FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
            GG++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI
Sbjct: 309 PGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGI 368

Query: 505 MDNLVRFSFGVEDFEDLKADVLQALHAI 532
            D L+R S G+ED ED+  D+  A+   
Sbjct: 369 TDGLIRLSVGLEDPEDIINDLEHAIRKA 396

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  443 bits (1142), Expect = e-153
 Identities = 147/387 (37%), Positives = 221/387 (57%), Gaps = 5/387 (1%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
            AIH G          A+  PV  T+ + F             +A   Y R  NPT  ++
Sbjct: 13  RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+
Sbjct: 71  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +D AD++ LEAA+      + + ESP NP +   D+  V+ +  K GA V +D T+
Sbjct: 131 KLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 189

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 384
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P
Sbjct: 190 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 249

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
           + A L++RG+KTL+LR+ +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+ 
Sbjct: 250 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 309

Query: 445 FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
            GG+++FE+ G + A  +F++AL++   A S G  ES+   PA M++   +  ER  YGI
Sbjct: 310 PGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGI 369

Query: 505 MDNLVRFSFGVEDFEDLKADVLQALHA 531
            + LVR S G+ED +DL ADV QAL A
Sbjct: 370 SEGLVRLSVGLEDIDDLLADVQQALKA 396

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  441 bits (1137), Expect = e-152
 Identities = 131/389 (33%), Positives = 216/389 (55%), Gaps = 7/389 (1%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
             IHA  +  +     A   P+  TS + F    +  +    + + + Y R GNPT   +
Sbjct: 11  ACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNL 67

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           E K++ LE  E+ V  +SGM A    +L ++ AG H+++    Y  T    E  L K GI
Sbjct: 68  EGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI 127

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGT 325
               I+ A    ++  +  N   + + E+P NP L+ +D++ V    H + G +V  D T
Sbjct: 128 QVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNT 186

Query: 326 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALN 383
           F +P+    +  G D+V+HSATK+I GH DV+AG I G   L+ QIR   +  + G  ++
Sbjct: 187 FCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS 246

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
           P+ A+LI RG+ TL++R++ ++  A+++A+ L++HP V++V+YPG + H  H IA +QM 
Sbjct: 247 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR 306

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
            +G +++F +        K +D LK+  +A S GGCES++  PA M++  + + ER   G
Sbjct: 307 MYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAG 366

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           I D ++R S G+ED ++L AD  Q L A+
Sbjct: 367 ITDGMIRLSVGIEDADELIADFKQGLDAL 395

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  438 bits (1130), Expect = e-152
 Identities = 133/386 (34%), Positives = 205/386 (53%), Gaps = 7/386 (1%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            +  +H         V  +   P+  TS + F  T +  D    +     Y R GNPT  
Sbjct: 7   TTTLLHPKGDH----VLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVE 62

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
             EE + ++EGA  +    SGM A +   LA +  G H++     Y  T       LP+ 
Sbjct: 63  QFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF 122

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
           GI   +ID +D+E ++AA   N   + + ESP NP  +  D+K ++ +CH++GA + +D 
Sbjct: 123 GIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDA 181

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 383
           TF +P   K L LGAD+ LHS +K+I GH DV+ G  S      +  I+      G  + 
Sbjct: 182 TFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA 241

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
           P  A+L  RGMKTL +R+Q      L++AK LE H K+ +V++PGL+S P H IA +QMT
Sbjct: 242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT 301

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
           G+G    FE+     A  K ++ LK+  +A S G  +++++ PA M++  + ++   K G
Sbjct: 302 GYGSTFLFEMKS-FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQG 360

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQAL 529
           I   LVR S G+E+ +D+ AD+ QAL
Sbjct: 361 ITPELVRISVGIENVDDIIADLKQAL 386

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  431 bits (1112), Expect = e-149
 Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 9/388 (2%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
           + +  G         +     +  TS Y +   A            + Y RYGNPT  V 
Sbjct: 30  VGVRGGMLRSG---FEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVF 86

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           EE++  +EGA +    ASGM+A    L AL+ AG  +V     +    +    +LP+ G+
Sbjct: 87  EERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +D  D+   E AL+       F E+P+NP    VD+  V++L H  GA V +D  F
Sbjct: 147 QTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGALNPN 385
           ATPL Q+   LG D+V++S TK I G   VL G+I G  + +      L    G A++  
Sbjct: 206 ATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAF 265

Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
            A+++++G++TL +RVQ  N++A R+A+ L  HP V+ V YP L SHP++ +A +QM+G 
Sbjct: 266 NAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGG 325

Query: 446 GGVVSFEVDGDLTA----TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 501
           G VV+F +D           + +D +++  I+ + G  +S+V  PA  ++  +    R  
Sbjct: 326 GTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAA 385

Query: 502 YGIMDNLVRFSFGVEDFEDLKADVLQAL 529
            G+ D +VR S G+ED +DL AD+ +AL
Sbjct: 386 IGLGDGVVRISVGLEDTDDLIADIDRAL 413

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  429 bits (1105), Expect = e-148
 Identities = 126/389 (32%), Positives = 201/389 (51%), Gaps = 12/389 (3%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            ++A+ +G           +  P+  +S Y F    E          + +Y R GNPT  
Sbjct: 6   ATIAVRSGLNDDE--QYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRD 55

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
           VV+  ++ LEG    V+  +GMSA  ++    +  G  +V   DCY  +    +++  + 
Sbjct: 56  VVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG 115

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
                 +D  D + L AAL      L   ESP+NP LR VD+  +  L  + GA+  +D 
Sbjct: 116 CYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDN 174

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 383
           TF +P  Q  L+LGADLVLHS TK++ GH+DV+AG +      +VT++    + +G    
Sbjct: 175 TFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGG 234

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
              +YL++RG++TL  R++     A  + K L+  P VK++++P L  +  H IA +Q  
Sbjct: 235 AFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK 294

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
           GFG ++SFE+DGD     +F+  L +  +A S GG ES++   A M++  ++   R   G
Sbjct: 295 GFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAG 354

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           I + L+R S G+ED EDL AD+     A 
Sbjct: 355 ISETLLRISTGIEDGEDLIADLENGFRAA 383

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  428 bits (1103), Expect = e-147
 Identities = 101/390 (25%), Positives = 180/390 (46%), Gaps = 10/390 (2%)

Query: 148 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTVVV 206
            ++AG          A+ + +   S+  F          + +      YGR G  T   +
Sbjct: 30  LVNAGRSKKYT--LGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSL 87

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           ++ M  LEG    V+   G +A    +LA +  G H++ T   Y  ++ F   +L K+G+
Sbjct: 88  QQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDG 324
           T +  DP     +   L  N   + F ESP +  +   DV  +          AI+ ID 
Sbjct: 148 TTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 384
           T+A  +  KAL  G D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++ 
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDA 266

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
           + AY+  RG++TL +R++Q + ++L++A+ L  HP+V RV++P L     H    +  TG
Sbjct: 267 DTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTG 326

Query: 445 FGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 502
             G+ SF +   L       ++D   +  +A S+GG ES++          +     +  
Sbjct: 327 SSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEI-- 384

Query: 503 GIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
                L+R   G+ED +DL AD+      I
Sbjct: 385 DFSGTLIRLHIGLEDVDDLIADLDAGFARI 414

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  425 bits (1094), Expect = e-146
 Identities = 140/386 (36%), Positives = 207/386 (53%), Gaps = 14/386 (3%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            + AIH+G R      T A+  P+  +S +       L       R  +EY R GNPT  
Sbjct: 19  ATRAIHSGYRPDP--ATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRT 69

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +E  ++A+E A      +SGM+A+   L A++  G H+V   D Y  T   I+ V    
Sbjct: 70  ALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW 129

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
            +  T +  AD++ + AA+      L + E+PTNP L   D+  ++ L     A V +D 
Sbjct: 130 NVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 383
           TFA+P  Q+ LSLGAD+VLHS TK+IGGH+DV+ G++  + + L      L +  G    
Sbjct: 189 TFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPG 248

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
           P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP +  V YPGL SHP H +A +QM 
Sbjct: 249 PFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR 308

Query: 444 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 503
           GFGG+VS  +    TA  +      I  +A S G  ES+++ P+ M++   + S+     
Sbjct: 309 GFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQL---E 365

Query: 504 IMDNLVRFSFGVEDFEDLKADVLQAL 529
           + D+LVR S G+ED  DL  D+ QAL
Sbjct: 366 VPDDLVRLSVGIEDVADLLDDLKQAL 391

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  421 bits (1085), Expect = e-145
 Identities = 136/389 (34%), Positives = 227/389 (58%), Gaps = 13/389 (3%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            + AIH G+       + A+  P+  ++ +      +         + FEY R GNPT  
Sbjct: 20  ATQAIHVGQD-PEQWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRN 70

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +E+ ++AL+GA+  +  ASG++A+   +  L+ AG  I+   D Y  T  +   V  + 
Sbjct: 71  CLEKAVAALDGAKYCLAFASGLAATVT-ITHLLKAGDQIICMDDVYGGTNRYFRQVASEF 129

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCID 323
           G+  + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G  I+ +D
Sbjct: 130 GLKISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD 188

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 382
            TF +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S + + L  ++R L + LG   
Sbjct: 189 NTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVP 248

Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 442
           +P   YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q 
Sbjct: 249 SPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQC 308

Query: 443 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 502
           TG  G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +++R   
Sbjct: 309 TGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVL 368

Query: 503 GIMDNLVRFSFGVEDFEDLKADVLQALHA 531
           GI D L+R S G+ED EDL  D+ QAL A
Sbjct: 369 GISDTLIRLSVGLEDEEDLLEDLDQALKA 397

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  420 bits (1081), Expect = e-144
 Identities = 145/388 (37%), Positives = 224/388 (57%), Gaps = 15/388 (3%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            +LAIH G+       T A+  P+  TS Y      E           FEY R  NPT  
Sbjct: 21  ATLAIHGGQSPDP--STGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRF 70

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK- 263
             E  ++ALEG       ASGM+A++  ++ L+ AG H+V   D Y  T    E V  + 
Sbjct: 71  AYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129

Query: 264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 323
            G+  + +D  D    +AA+  +   + + E+PTNP L+ VD+  ++ +  K G +  +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS--ISGSGKLVTQIRNLHHVLGGA 381
            TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G   +  + +L  Q+  L + +GG 
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248

Query: 382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 441
             P  ++L +RG+KTL LR++     AL +A+ LE HP +++V YPGL SHP+H +A +Q
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308

Query: 442 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 501
           M+GFGG+VS  + G   A  +F +  ++  +A S GG ES+V+ PA+M++  +  + R +
Sbjct: 309 MSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQ 368

Query: 502 YGIMDNLVRFSFGVEDFEDLKADVLQAL 529
            GI D LVR S G+ED  DL+ D+ +AL
Sbjct: 369 LGISDALVRLSVGIEDLGDLRGDLERAL 396

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  414 bits (1066), Expect = e-141
 Identities = 128/401 (31%), Positives = 215/401 (53%), Gaps = 19/401 (4%)

Query: 133 DLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 192
           ++K EAS      +L ++   +       DA++TP+  T+ +      E           
Sbjct: 80  NIKEEASV----STLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGP 124

Query: 193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 252
           ++Y R GNPT   +E  ++ L+ A+      SGM+A +  +  L+  G  IV   D Y  
Sbjct: 125 YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGG 183

Query: 253 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 312
           +   +  V+P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEM 242

Query: 313 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQI 371
            H +GA+V +D +  +P+  + L LGAD+V+HSATKFI GH+DV+AG ++  G+ L  ++
Sbjct: 243 AHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302

Query: 372 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 431
             L +  G  L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+VK+V+Y GL  
Sbjct: 303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPD 362

Query: 432 HPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 491
           HP HH+   Q  G G V SF   G +  +   ++  K   IA SFG  +S++  P  MS+
Sbjct: 363 HPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421

Query: 492 WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             +    R   G+ ++LVR S G+ED +DL +D+  A    
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTF 462

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  405 bits (1043), Expect = e-138
 Identities = 131/395 (33%), Positives = 215/395 (54%), Gaps = 21/395 (5%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            + AIHAGE +    V  ++  P+  ++ +     A           ++EY R  NP   
Sbjct: 9   ATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPANP-------IGTYEYSRSQNPNRE 58

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +E  ++ALE A+  +  +SG + +   +L  +P G H V+  D Y  T  +   V    
Sbjct: 59  NLERAVAALENAQYGLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAH 117

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IV 320
           G+  +  +   +  L   +  N   L + E+PTNP L+  D++ V+DL  K  A    I+
Sbjct: 118 GVETSFTN-DLLNDLPQLIKEN-TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175

Query: 321 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLG 379
            +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235

Query: 380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIA 438
              +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A  + V  V+YPGLK+HP + + 
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295

Query: 439 TQQMTGF--GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ 496
            +Q      GG++SF + G   A  KF  + ++  +A S GG ES+++ PA+M++  + +
Sbjct: 296 LKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPK 355

Query: 497 SERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 531
             R   G+ D+LVR S G+ED +DL  D+ QAL  
Sbjct: 356 EAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  393 bits (1011), Expect = e-135
 Identities = 119/331 (35%), Positives = 186/331 (56%), Gaps = 5/331 (1%)

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCID 323
           G+    ID A    +E  L  N   + + E+P NP L+ +D++       K K  +V +D
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGA 381
            TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ +++   +  + G  
Sbjct: 121 NTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAI 180

Query: 382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 441
           ++P+ A+LI RG  TL +RV++    A ++A+ L  H  VK+V+YPGL  HP H IA +Q
Sbjct: 181 ISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240

Query: 442 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 501
           M  FG +++F+VDG L    K +D   +  +A S GG ES++  PA M++  + + ER  
Sbjct: 241 MKMFGSMIAFDVDG-LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREA 299

Query: 502 YGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
            G+ DNL+R S G E+ +D+  D+ QAL  +
Sbjct: 300 AGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  306 bits (785), Expect = 2e-99
 Identities = 122/411 (29%), Positives = 199/411 (48%), Gaps = 39/411 (9%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 203
            A+H  +      V  A+ TPV + +A+ F+ +   A++   +        Y R  NPT 
Sbjct: 30  RALHVPKAKRD--VHGALRTPVYDNAAFEFENSDEIAQVSLGRA---LGHVYSRSSNPTV 84

Query: 204 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 263
             +E+++  L GA   + + SGM+A +  +L L  AG  +VTT   +  T    +  LP 
Sbjct: 85  EDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS 144

Query: 264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 323
            GI    +D  D   +E A +     L F E+ +NP L+  D++ +S + H KG  + +D
Sbjct: 145 FGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD 203

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 367
            T   P   +A  LG D+ + S+TKFI G    + G +   G                  
Sbjct: 204 TTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG 263

Query: 368 ---------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH 418
                        +N    LG +L+P+ AYL   G++T+ LR+++    A  +A  L + 
Sbjct: 264 PMAFLYKARKEVFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSI 319

Query: 419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG 478
           P+VK V++P L   P + IA +Q    G +++FE++    A+ +F+DALK+   A +   
Sbjct: 320 PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK-EASYRFMDALKLIRRATNIHD 378

Query: 479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
            +S++  P  + Y   S  ERLK  I   ++R S G+E+ EDLK D+LQAL
Sbjct: 379 NKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  293 bits (752), Expect = 1e-94
 Identities = 123/422 (29%), Positives = 197/422 (46%), Gaps = 51/422 (12%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 203
           LA+ AG          A+  P+   +AY FK      E     E     + Y R  +PT 
Sbjct: 6   LAVLAGLPEDP---HGAVGLPIYAVAAYGFKTLEEGQERFATGE----GYVYARQKDPTA 58

Query: 204 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 263
             +EE++ ALEGA   V++ASG +A+   LLAL+  G  +V     + +T      VL  
Sbjct: 59  KALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118

Query: 264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 323
           MG+T   +DP + E +  AL +      F E+  NP L   D++ ++ L  + G  + +D
Sbjct: 119 MGVTVRYVDP-EPEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD 176

Query: 324 GTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------------- 367
            TF A     + L+ GA +V+ S TK+  GH  VL G++                     
Sbjct: 177 NTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236

Query: 368 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 410
                               +       G AL+P  AYL+ +G++T+ LRV + + TA  
Sbjct: 237 QIPWEALRARCFPERVRTLGLSL----CGMALSPFNAYLLFQGLETVALRVARMSETARF 292

Query: 411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP 470
           +A+ L+ HPKVK + YPGL   P H  A + +   G +++ ++ GDL    +F+ A+++ 
Sbjct: 293 LAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLL 351

Query: 471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 530
             A + G   +++  P   ++  L +  RL+ G+   LVR S G+ED  DL A   +AL 
Sbjct: 352 KAA-NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410

Query: 531 AI 532
           A+
Sbjct: 411 AV 412

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  289 bits (742), Expect = 4e-93
 Identities = 126/425 (29%), Positives = 195/425 (45%), Gaps = 52/425 (12%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 203
           L +HAG        T +   P+  T++Y FK     A L   KE       Y R  NPT 
Sbjct: 6   LQLHAGYEPEP--TTLSRQVPIYPTTSYVFKSPEHAANLFALKE---FGNIYSRIMNPTV 60

Query: 204 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 263
            V+E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L +
Sbjct: 61  DVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR 120

Query: 264 MGITATVIDPADM-EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 322
           +GI        +  E   A   +     ++ ES  NP L   D++ ++    +KG  + +
Sbjct: 121 LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIV 179

Query: 323 DGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-------------- 367
           D TF       + L+ GA LV HS TK++GGH  V+AG+I   G                
Sbjct: 180 DNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239

Query: 368 ----------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 405
                                 V  +R+     G AL P  A++++ GM+TL LR ++  
Sbjct: 240 PGYHGLRLTEAFGELAFIVKARVDGLRD----QGQALGPFEAWVVLLGMETLSLRAERHV 295

Query: 406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSFEVDGDLTATIKFI 464
              L +A  L   P+V  V+YPGL  HP H  A +      G V++F + G   A  +FI
Sbjct: 296 ENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFI 355

Query: 465 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 524
             LK+     + G   ++   PA  ++  LS  E+ + G+   +VR S G+E  EDLKA+
Sbjct: 356 SRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAE 415

Query: 525 VLQAL 529
           + +AL
Sbjct: 416 LKEAL 420

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  208 bits (530), Expect = 1e-61
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 21/282 (7%)

Query: 190 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 249
              + Y   G  T   V   +   E       + SG  A +  L  ++  G  ++  T  
Sbjct: 57  TTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGK 116

Query: 250 Y-------RKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTESP- 296
                      R        +  I    +        D E + AA+++N   +   +   
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN-TKMIGIQRSK 175

Query: 297 ---TNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 350
              T P      +K +       K   +V +D  +   +  Q+   +GADL+  S  K  
Sbjct: 176 GYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNP 235

Query: 351 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 410
           GG      G I G  + V          G      A+   ++ M             AL+
Sbjct: 236 GGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALK 295

Query: 411 MAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 451
            A    A   K+     P   +     I + Q      +++F
Sbjct: 296 GAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAF 337

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  205 bits (522), Expect = 3e-61
 Identities = 56/349 (16%), Positives = 109/349 (31%), Gaps = 37/349 (10%)

Query: 185 FKEKRRASFEYGRYGNPTTVVVEEKMSAL-------EGAESTVIMASGMSASTVMLLALV 237
           F    +       Y   +     EK++         +  +  V      SA    +LAL 
Sbjct: 40  FLIDEKDKALLNTYIGSS--YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK 97

Query: 238 PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 297
           P    I    +      I     +    + A   +   +  +   ++ +   +  T S  
Sbjct: 98  P-KKVIHYLPELPGHPSIERSCKI----VNAKYFESDKVGEILNKIDKD-TLVIITGSTM 151

Query: 298 N-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG 351
           +   +   + K V +    K AIV +D      +        AL LGADLV+ S  K + 
Sbjct: 152 DLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 211

Query: 352 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALR 410
           G      G ++G  +LV +I       G    P     I R +K  +L R+++    A  
Sbjct: 212 GP---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 268

Query: 411 MA----KILEAHPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID 465
                 + L    K +        +  P   +  +         +  +   +      + 
Sbjct: 269 FDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVY----KDDTINIKKLIEIGFNLLK 324

Query: 466 ALKIPYIAPSF--GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 512
              I  I  +   G  +S+           +  +  +K  I++++    
Sbjct: 325 NYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIK-AIVESIKMAF 372

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  190 bits (483), Expect = 5e-55
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 31/286 (10%)

Query: 192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 244
            + Y   G  +   V   +   E A       +G  A    L   +     ++       
Sbjct: 68  GYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPY 127

Query: 245 -TTTDCYRKTRIFIETVLPKMGITATVID----PADMEGLEAALN-NNNVSLFFTESPTN 298
            T  D            L + G+   ++D      D+  ++  L  ++++ L   +  T 
Sbjct: 128 DTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTG 187

Query: 299 ----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLNQKA-LSLGADLVLHSATKFIG 351
                 LR  ++  +        +  IV +D  +   + +K    +GAD++  S  K IG
Sbjct: 188 YGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIG 247

Query: 352 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 411
           G      G I+G  + VTQ      V G      + + ++R +             A++ 
Sbjct: 248 GGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKG 307

Query: 412 AKILEAHPKVKRVHYPGLKSHPEHH------IATQQMTGFGGVVSF 451
           A       ++      G    P+++      I   +      ++ F
Sbjct: 308 AVFCARIMEL-----AGFDVLPKYNDKRTDIIQAIKFNDEKKLIDF 348

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  176 bits (449), Expect = 4e-50
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 26/279 (9%)

Query: 178 KTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV 237
           +   + +      + + YG  G  +   V  ++   E A       +G  A    L   +
Sbjct: 53  QEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL 112

Query: 238 PAGGHIV--------TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALN 284
             G  ++        T  D    T       L + GI    +D       ++E +E  L 
Sbjct: 113 RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK 172

Query: 285 NN-NVSLFFTESPTN----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLN-QKALS 336
            + +++L   +  T       L   D+K + D     +K  I  +D  +   ++ ++   
Sbjct: 173 EDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD 232

Query: 337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT 396
           +GADL+  S  K IGG      G ++G+   + +      V G      + + ++R M  
Sbjct: 233 VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQ 292

Query: 397 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 435
                   +  AL+ A +         +   G +  P++
Sbjct: 293 GLFLAPHISMEALKGAILCSRI-----MELAGFEVMPKY 326

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  154 bits (390), Expect = 7e-42
 Identities = 42/270 (15%), Positives = 77/270 (28%), Gaps = 37/270 (13%)

Query: 192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 244
            + Y   G  T   V   +   E A     + SG  A + +L  ++     ++       
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 245 -TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTES--- 295
            T  +     +    + L    I  + +        D   +   +      +    S   
Sbjct: 113 DTLEEIVGIRKQGQGS-LKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGY 171

Query: 296 PTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGG 352
              P      +K +           IV +D  +   +  Q+   +GAD++  S  K  GG
Sbjct: 172 ADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGG 231

Query: 353 HNDVLAGSISGSGKLVTQIRN------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNS 406
                 G I+G   LV           +    G +L       + +G         Q   
Sbjct: 232 GLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFFLAPHVTAQAIK 289

Query: 407 TALRMAKILEAHPKVKRVHYPGLKSHPEHH 436
            A   A +L            G+++ P   
Sbjct: 290 GARFTAAMLAEF---------GVEADPVWD 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 4e-14
 Identities = 73/552 (13%), Positives = 155/552 (28%), Gaps = 188/552 (34%)

Query: 62  RFPPNFV-R-QLSTKARRNCSNIGVAQIVAASWSNSV----GSGSNSAAATAASA----- 110
            F    V R Q   K R+    +  A+ V       +    GSG    A     +     
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 111 --------ITSG---DDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAG-ERLGRG 158
                   +          +++ L+ +  +   +  + +   SS+  L IH+    L R 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRL 237

Query: 159 ----------IVTDAITTPVVNTSAYFFKKTAELIDFKEK-----RRAS-FEYGRYGNPT 202
                     +V   +             K     +   K     R     ++      T
Sbjct: 238 LKSKPYENCLLVLLNVQNA----------KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 203 TVVVEEKMSALEGAESTVIMAS--GMSASTV---------MLLALVPAGGHI-VTTTDCY 250
            + ++     L   E   ++          +           L+++       + T D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 251 RKTRIFIETVLPKMGITATVIDPADMEGL--EAALNNNNV-------SLFFTESPTNPFL 301
           +   +  + +   +  +  V++PA+   +    ++   +        SL + +   +   
Sbjct: 348 KH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--- 402

Query: 302 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI 361
              DV +V +  HK   +             K  ++                        
Sbjct: 403 ---DVMVVVNKLHKYSLVEK---------QPKESTIS----------------------- 427

Query: 362 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV 421
                       +  +                   L L+V+ +N  AL    I++ +   
Sbjct: 428 ------------IPSIY------------------LELKVKLENEYALH-RSIVDHYNIP 456

Query: 422 KRVHYPGLK---------SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI 472
           K      L          SH  HH+   +           +   +    +F++  KI + 
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-----RMTLFRMVFLDFRFLEQ-KIRHD 510

Query: 473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN----------LVRFSFGVEDFEDL- 521
           + ++    SI++         L Q +  K  I DN          ++ F   +E  E+L 
Sbjct: 511 STAWNASGSILN--------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLI 560

Query: 522 ---KADVLQ-AL 529
                D+L+ AL
Sbjct: 561 CSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 49/403 (12%), Positives = 102/403 (25%), Gaps = 133/403 (33%)

Query: 232 MLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL------NN 285
           +L     A    V   DC    +   +++L K  I   ++    + G             
Sbjct: 21  ILSVFEDA---FVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 286 NNVSLFFTES--PTNPFL------RCVDVKLVSDL---CHKKGAIVCIDGTFATPLN--- 331
             V  F  E       FL            +++ +      +   +  D       N   
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYNVSR 133

Query: 332 -------QKAL-SL--GADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQ-IRNLHHVL 378
                  ++AL  L    ++++               G + GSGK  +      +  + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLID--------------G-VLGSGKTWVALDVCLS--YKV 176

Query: 379 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEH 435
              ++    +L ++   +    ++       ++     +   H    ++    +++    
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 436 HIATQQM----------------------------TGFGGVVSF------------EVDG 455
            + ++                              T F  V  F                
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 456 DLTAT------IKFID---------ALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSER 499
            LT        +K++D          L   P         ESI D  A    W     ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDK 354

Query: 500 LKYGI---MDNLV------RF-SFGVEDF-EDLK--ADVLQAL 529
           L   I   ++ L        F    V  F         +L  +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLI 395

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +  ++    G +   +      A   ++ +L      +V   +C+  + +  E    + G
Sbjct: 59  IHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE----RAG 114

Query: 266 ITATVIDPAD-------MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCH 314
           +   ++   D        E     +        V L     P   +    DVK ++ +C 
Sbjct: 115 LNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS 174

Query: 315 KKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG 351
           +    + ++G +A   +      +GAD ++ S  K + 
Sbjct: 175 EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 27/171 (15%)

Query: 200 NPTTVVVE-EKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR--- 254
           +P  V+++  K            + +G ++    ++ +     G I+   + ++      
Sbjct: 54  HPEEVILKSMKQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL 113

Query: 255 -------IFIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV 306
                   FIET   P       V          + LNN+   L     P   +    +V
Sbjct: 114 DISQQEGHFIETHQSPLTNHYNKV--------NLSRLNNDGHKLVVLTYPN-YYGETFNV 164

Query: 307 KLVSDLCHKKGAIVCID---GTFAT--PLNQKALSLGADLVLHSATKFIGG 352
           + V    H+    V ID   G            L+  AD V+ S  K +  
Sbjct: 165 EEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPA 215

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 38/182 (20%)

Query: 207 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------I 255
           E+  + + GA+ +  +  G S S   ++ A +     +V   +C++             +
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270

Query: 256 FIETVLPKMGITATVIDPADM--EGLEAALNNN---------NVSLFFTESPTNPFLRCV 304
           ++     + GI    I P +M  E L+  ++ +           S     + T     C 
Sbjct: 271 YMVPSRNRYGIIGP-IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCY 328

Query: 305 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 350
           + K   DL  K    +  D                +A        +       HS  K +
Sbjct: 329 NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL 388

Query: 351 GG 352
             
Sbjct: 389 NA 390

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 29/173 (16%)

Query: 207 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYR----------KTRI 255
           E+ ++ +  A+ + ++ +G S +  ++ +   PAG  I+   +C++           T I
Sbjct: 201 EQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI 260

Query: 256 FIETVLPKMGITATVIDPADMEG------LEAALNNNNVSLFFTESPTNPFLRCVDVKLV 309
           +        GI    I  ++ +       ++   N          + T       +   +
Sbjct: 261 YFRPTRNAYGI-LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFI 318

Query: 310 SDLCHKKGAIV-CIDGTFA---------TPLNQKALSLGADLVLHSATKFIGG 352
                 K          +            ++   +         S  K +  
Sbjct: 319 KKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	532
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	100.0
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	100.0
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	100.0
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.96
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.96
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.96
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.96
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.96
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.96
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.96
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.95
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.95
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.95
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.95
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.95
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.95
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.95
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.95
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.95
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.95
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.95
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.95
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.95
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.95
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.95
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.94
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.94
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.94
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.94
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.94
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.94
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.94
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.94
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.94
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.94
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.94
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.94
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.94
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.94
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.94
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.94
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.94
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.94
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.94
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.94
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.94
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.94
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.94
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.94
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.94
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.94
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.94
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.93
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.93
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.93
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.93
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.93
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.93
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.93
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.93
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.93
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.93
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.93
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.93
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.93
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.93
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.93
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.93
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.93
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.93
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.93
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.93
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.93
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.93
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.93
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.92
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.92
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.92
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.92
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.92
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.92
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.92
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.92
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.92
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.92
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.92
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.92
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.92
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.92
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.92
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.92
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.92
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.91
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.91
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.91
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.91
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.91
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.91
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.91
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.91
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.9
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.9
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.9
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.9
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.9
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.9
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.9
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.9
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.9
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.9
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.9
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.89
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.89
1svv_A	359	Threonine aldolase; structural genomics, structura	99.89
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.89
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.89
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.89
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.89
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.88
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.88
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.88
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.88
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.88
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.88
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.88
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.88
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.88
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.88
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.8
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.87
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.87
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.87
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.87
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.87
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.87
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.87
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.86
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.86
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.86
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.86
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.86
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.86
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.86
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.86
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.86
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.86
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.86
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.85
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.85
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.85
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.85
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.85
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.85
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.85
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.85
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.85
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.85
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.84
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.84
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.84
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.84
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.84
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.84
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.84
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.84
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.83
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.83
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.83
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.83
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.82
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.82
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.82
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.82
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.82
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.82
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.82
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.82
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.82
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.82
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.82
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.82
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.82
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.81
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.8
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.8
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.79
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.78
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.74
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.59
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.73
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.71
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.66
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.61
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.61
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.6
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.56
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.53
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.51
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.47

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=4.8e-66  Score=551.21  Aligned_cols=385  Identities=32%  Similarity=0.487  Sum_probs=308.9

Q ss_pred             CCCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEE
Q 009523          141 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  220 (532)
Q Consensus       141 ~~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i  220 (532)
                      |.+++|++||+|..++  ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.++||++||+++|.+.++
T Consensus        24 m~~~~t~~~h~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v  101 (430)
T 3ri6_A           24 MRGFTTRALHVPKAKR--DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVL  101 (430)
T ss_dssp             -CCHHHHHHCCC----------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             cCCcchhheeCCCCCC--CCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            4568999999997653  34789999999999999999988777776667789999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCC
Q 009523          221 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  300 (532)
Q Consensus       221 ~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~Npt  300 (532)
                      +++||++|+.+++++++++||+|+++++.|+++...+...++..|+++++++.+|+++|++++++ +|++|++|+|+||+
T Consensus       102 ~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~Npt  180 (430)
T 3ri6_A          102 ALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQ  180 (430)
T ss_dssp             EESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred             EECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCC
Confidence            99999999999999999999999999999999988776677888999999999999999999987 79999999999999


Q ss_pred             CcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe--ChHH-----------
Q 009523          301 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG--SGKL-----------  367 (532)
Q Consensus       301 G~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~--~~~l-----------  367 (532)
                      |.+.|+++|+++|+++|+++|+|++|+.+..+++...|+|++++|+||+++||+++++|+++.  +..+           
T Consensus       181 G~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~  260 (430)
T 3ri6_A          181 LQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYA  260 (430)
T ss_dssp             CCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHH
T ss_pred             CeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhh
Confidence            999999999999999999999999999988889999999999999999999999999999994  3222           


Q ss_pred             -------HHHHH-HHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHh
Q 009523          368 -------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT  439 (532)
Q Consensus       368 -------i~~l~-~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~  439 (532)
                             +++++ .....+|..++++.+|+++++++++..|++++.+|+++++++|+++|.|.+|.||+++++|+|++++
T Consensus       261 ~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~  340 (430)
T 3ri6_A          261 KAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAK  340 (430)
T ss_dssp             HHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHH
T ss_pred             hhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHH
Confidence                   33333 2345678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCccc-EEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH
Q 009523          440 QQMTGFGG-VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF  518 (532)
Q Consensus       440 ~~~~g~G~-~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~  518 (532)
                      +|+ |+|+ |+||+++ +.+.+.+|+++++++++++|+|+.+|++++|++++|..++++++.+.|+++++||||||+|++
T Consensus       341 ~~~-g~Gg~~lsf~l~-~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~  418 (430)
T 3ri6_A          341 RQF-RYAGSILTFELE-SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEI  418 (430)
T ss_dssp             HHC-SSCCSEEEEECS-SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCH
T ss_pred             HhC-CCCceEEEEEEC-CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCH
Confidence            999 9999 9999998 567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 009523          519 EDLKADVLQALH  530 (532)
Q Consensus       519 ~dli~dL~~AL~  530 (532)
                      +|+++||++||+
T Consensus       419 ~dl~~dl~~al~  430 (430)
T 3ri6_A          419 EDLKEDILQALC  430 (430)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999999984

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.7e-64  Score=531.81  Aligned_cols=384  Identities=33%  Similarity=0.546  Sum_probs=360.3

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|++||+|...+   .++++.||||+|++|.|++.+++.+.+.+...+|.|+||++|+.++|+++|++++|.++++++
T Consensus        26 ~~~t~~~~~~~~~~---~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~  102 (414)
T 3ndn_A           26 SQATVGVRGGMLRS---GFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFAT  102 (414)
T ss_dssp             CHHHHHHHTTCCCC---TTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeeecCCCCC---CCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEE
Confidence            58899999997652   379999999999999999998888888777788999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+.+++++++++||+|+++++.|+++...+...++..|+++++++.+|+++|++++++ +|++|++|+|+||+|.
T Consensus       103 ~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~  181 (414)
T 3ndn_A          103 ASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQS  181 (414)
T ss_dssp             SSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999999887776667788999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-HHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~l~~~~~~~G~~  381 (532)
                      +.|+++|+++|+++|+++|+|++|+.+....++..|+|++++|+||+++++|++++|+++++++.+. .++.....+|..
T Consensus       182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~  261 (414)
T 3ndn_A          182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  261 (414)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999876677888999999999999999999888999999988776 677666778888


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----H
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----L  457 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~  457 (532)
                      +++..+++++++++++..|++++.+++++++++|+++|.+..+.||+++++|+|++++++++|+|++++|+++++    .
T Consensus       262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~  341 (414)
T 3ndn_A          262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK  341 (414)
T ss_dssp             CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876    6


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +.+.+|+++++++++++|+|+.+|++++|++++|..++++++.++|+++++||||+|+|+++|+++||++||+
T Consensus       342 ~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~  414 (414)
T 3ndn_A          342 QRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS  414 (414)
T ss_dssp             HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999984

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=4.3e-63  Score=530.37  Aligned_cols=396  Identities=87%  Similarity=1.319  Sum_probs=366.4

Q ss_pred             hhcccCCCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhC
Q 009523          136 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG  215 (532)
Q Consensus       136 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~g  215 (532)
                      ++++|++..+|++||+|...+....++++.+|||+|+||.|++.+++.+.+.++..+|.|+|+++|+.+++|++|++++|
T Consensus        49 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g  128 (445)
T 1qgn_A           49 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG  128 (445)
T ss_dssp             CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred             cccccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhC
Confidence            56777765599999999765311357999999999999999999887777766677899999999999999999999999


Q ss_pred             CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCe-eEEEEe
Q 009523          216 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV-SLFFTE  294 (532)
Q Consensus       216 a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~t-klV~le  294 (532)
                      +++.++++||++|+.+++++++++||+||++++.|++++.++...++..|+++++++.+|+++|++++++ +| ++|++|
T Consensus       129 ~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~-~tv~lV~le  207 (445)
T 1qgn_A          129 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQ-KKVNLFFTE  207 (445)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHH-SCEEEEEEE
T ss_pred             CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc-CCCCEEEEe
Confidence            9999999999999999999999999999999999999887776667888999999999999999999987 68 999999


Q ss_pred             CCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH
Q 009523          295 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL  374 (532)
Q Consensus       295 sP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~  374 (532)
                      +|+||+|.+.|+++|+++|+++|+++|+|++|+.++...++.+|+|++++|+||+++|++++++|++++++++++.++..
T Consensus       208 ~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~  287 (445)
T 1qgn_A          208 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL  287 (445)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred             CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999988777788889999999999999999988899999999999998887


Q ss_pred             hhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          375 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       375 ~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      ...+|+.++++.+|+++++++++..|++++.+++++++++|+++|.+.++.||+++++|+|+++++++++.|++++|+++
T Consensus       288 ~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~  367 (445)
T 1qgn_A          288 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD  367 (445)
T ss_dssp             HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred             HHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence            77788889999999999999999999999999999999999999999899999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          455 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       455 g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      ++.+.+.+|++.++++++++|+|+++|++.+|+.++|..++++.+.++|+++++||||+|+|++++++++|+++|+++
T Consensus       368 ~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~  445 (445)
T 1qgn_A          368 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  445 (445)
T ss_dssp             SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            765678999999999999999999999999999999999999999999999999999999999999999999999865

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=4.8e-63  Score=523.48  Aligned_cols=376  Identities=39%  Similarity=0.668  Sum_probs=349.8

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|..++  ..+++++||||++++|.|++.+        ...+|.|+|+++|+.++|+++|++++|+++++++
T Consensus        19 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~--------~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~   88 (400)
T 3nmy_A           19 SLATLAIHGGQSPD--PSTGAVMPPIYATSTYAQSSPG--------EHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAF   88 (400)
T ss_dssp             CHHHHHHHTTCCCC--TTTCBSSCCBCCCSBBBCSBTT--------BSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcchheeeCCCCCC--CCCCCcCCCccccceeeccCcc--------ccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence            47899999997763  3589999999999999998753        3467999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHh-cccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~-l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      +||++|+.+ +..++++||+|+++++.|++++..+... ++..|+++.+++.+|+++|++++++ ++++|++|+|+||+|
T Consensus        89 ~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~G  166 (400)
T 3nmy_A           89 ASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRA-DTKMVWIETPTNPML  166 (400)
T ss_dssp             SSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred             cCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhcc-CCCEEEEECCCCCCC
Confidence            999999998 5778999999999999999988877666 7778999999999999999999987 799999999999999


Q ss_pred             cccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEE-EEE-eChHHHHHHHHHhhhcC
Q 009523          302 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SIS-GSGKLVTQIRNLHHVLG  379 (532)
Q Consensus       302 ~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG-~lv-~~~~li~~l~~~~~~~G  379 (532)
                      .+.|+++|+++|+++|+++|+|++|++++...++.+|+|++++|+||+++|+++.++| +++ .+++++++++.....+|
T Consensus       167 ~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g  246 (400)
T 3nmy_A          167 KLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIG  246 (400)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHC
T ss_pred             eeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999987777888899999999999999999998899 555 46788888888888889


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA  459 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~  459 (532)
                      ..++++.+|+++++++++..|++++.+++++++++|+++|.|..|.||+++++|+|++++++++|+|+|++|+++++.+.
T Consensus       247 ~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~  326 (400)
T 3nmy_A          247 GVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDA  326 (400)
T ss_dssp             CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876677


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +.+|+++++++++++|+|+.+|++++|+.++|..++++.+.++|+++++||||+|+|+++|+++||++||+
T Consensus       327 ~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~  397 (400)
T 3nmy_A          327 AKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV  397 (400)
T ss_dssp             HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999985

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=2.4e-61  Score=512.84  Aligned_cols=383  Identities=27%  Similarity=0.451  Sum_probs=349.8

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcc-cCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      +++|+++|+|..++  ..+++++||||+|+||.|++.+++.+.+.+. ..+|.|+|+++|+.++||++||+++|++++++
T Consensus        25 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~  102 (415)
T 2fq6_A           25 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL  102 (415)
T ss_dssp             CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcCceeEeCCCCCC--CCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence            47899999997643  2478999999999999999998887777554 56799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      ++||++|+++++.+++++||+||++.+.|+++...+...++..|+++++++.+|+++|++++++ +|++|++|+|+||+|
T Consensus       103 ~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~-~tklV~~e~~~NptG  181 (415)
T 2fq6_A          103 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITM  181 (415)
T ss_dssp             ESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCT-TEEEEEEESSCTTTC
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhcc-CCcEEEEECCCCCCC
Confidence            9999999999999999999999999999999988887777888999999999999999999987 799999999999999


Q ss_pred             cccCHHHHHHHHHh--CCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC
Q 009523          302 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  379 (532)
Q Consensus       302 ~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G  379 (532)
                      .++|+++|+++|++  +|+++|+|++|+.++...++.+|+|++++|+||+++|++++++|+++++++++++++......|
T Consensus       182 ~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G  261 (415)
T 2fq6_A          182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG  261 (415)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred             EeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcC
Confidence            99999999999999  9999999999998877788889999999999999999998889999999888888887777778


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--H
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--L  457 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--~  457 (532)
                      ..+++..+++++++++++..|++++.+|++.++++|+++|.+.++.||+++++|+|+++++++++.|++++|+++++  .
T Consensus       262 ~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~  341 (415)
T 2fq6_A          262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNN  341 (415)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCH
T ss_pred             CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCH
Confidence            88899999999999999999999999999999999999999999999999999999999999988999999999873  6


Q ss_pred             HHHHHHHHHcCCCceeecCCCccccccc--CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQ--PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~--pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +++.+|++.++++++++|+|+++|++.+  |+.++|....    .++|+.+++||||+|+|+++|+|++|.++|+++
T Consensus       342 ~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~  414 (415)
T 2fq6_A          342 EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  414 (415)
T ss_dssp             HHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence            7899999999999999999999999998  8777664211    246888899999999999999999999999863

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=7.8e-59  Score=489.41  Aligned_cols=375  Identities=37%  Similarity=0.583  Sum_probs=348.7

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|..++  ..++++.||||++++|.|++.+       +...+|.|+|+++|+.++|+++||+++|.++++++
T Consensus        17 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~   87 (392)
T 3qhx_A           17 GLATRAIHSGYRPD--PATGAVNAPIYASSTFAQDGVG-------GLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAF   87 (392)
T ss_dssp             CHHHHHHHSSCCCC--TTTCBSSCCBCCCSBBCCSSTT-------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcchhheeCCCCCC--CCCCCccCCcccCcceEecCcc-------cccCCccccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            47899999997653  3588999999999999998753       23457999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+|+++.+.|+++...+...++..|+++.+++.+|+++|++++++ ++++|++++|+||+|.
T Consensus        88 ~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  166 (392)
T 3qhx_A           88 SSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLS  166 (392)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcE
Confidence            999999999999999999999999999999888777777889999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|+++|+++|+++|+|++|+.++...+...|+|++++|+||++++++++++|+++++ +++++.++......|..
T Consensus       167 ~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~  246 (392)
T 3qhx_A          167 IADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAV  246 (392)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred             EecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999998888888899999999999999999998889999997 58888888887778888


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      .+++.+++++++++++..|++++.+++++++++|+++|.+..+.||+++++|+|++++++++|.|++++|+++++.+.++
T Consensus       247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~  326 (392)
T 3qhx_A          247 PGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAE  326 (392)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHH
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997667889


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +|++.++++++++|+|+.++++++|..++|..++.+   .+|+.+++||||+|+|+++|+|++|.++|+
T Consensus       327 ~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~  392 (392)
T 3qhx_A          327 QLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG  392 (392)
T ss_dssp             HHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHhCCCceECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999888765   789999999999999999999999999984

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=2.2e-57  Score=477.46  Aligned_cols=384  Identities=35%  Similarity=0.562  Sum_probs=355.0

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+| ..   ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|...+|+++|++++|.++++++
T Consensus         5 ~~~t~~~~~~-~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~   80 (389)
T 3acz_A            5 DITTTLLHPK-GD---HVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF   80 (389)
T ss_dssp             CHHHHHHSCS-SC---CSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeEEecC-CC---CCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            4689999999 32   3479999999999999999998888877666678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+|+++++.|+++...+...++..|+++.+++..|+++|++++++ ++++|++|+|+||+|.
T Consensus        81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  159 (389)
T 3acz_A           81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP-NTKMVYLESPANPTCK  159 (389)
T ss_dssp             SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCT-TEEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCe
Confidence            999999999999999999999999999999887766667788999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|.++|+++|+++|+|++|+.++...++..++|++++|+||+++++++.++|++++++ +++++++.....+|..
T Consensus       160 ~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~  239 (389)
T 3acz_A          160 VSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL  239 (389)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999887766778889999999999999999877789999998 8999888777667888


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      .++..+++++++++++..|++++.++++.++++|++++.+.++.+|+++++|+++++.+++++.|++++|++++ .+...
T Consensus       240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~~~~  318 (389)
T 3acz_A          240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FEAAK  318 (389)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HHHHH
T ss_pred             CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999986 67788


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      ++++.++++.+++|+|+.+|++++|+.++|..++++++..+|+++++||||+|.|++++++++|.++|+++
T Consensus       319 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~~  389 (389)
T 3acz_A          319 KLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALELW  389 (389)
T ss_dssp             HHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTCC
T ss_pred             HHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999889999999999999999999999999999999999999999999999999999999999864

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=7e-57  Score=476.46  Aligned_cols=377  Identities=36%  Similarity=0.609  Sum_probs=336.5

Q ss_pred             CccccccccCCcCCCCCCC-CcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          143 SDGSLAIHAGERLGRGIVT-DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~-~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      +++|+++|+|...+  ..+ +++.||||+|+||.+++..+        ..+|.|+||++|+..+||++||+++|.++.++
T Consensus        18 ~~~t~~~h~g~~~~--~~~~~~~~~pi~~stt~~~~~~~~--------~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~   87 (403)
T 3cog_A           18 HFATQAIHVGQDPE--QWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLA   87 (403)
T ss_dssp             THHHHHHHTTCCGG--GSTTCBSSCCBCCCSCBCCC----------------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcccEEEeCCCCCC--cCCCCCccCCeeccceeecCCccc--------cCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            47899999997653  246 89999999999999987532        23588999999999999999999999989999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      ++||++|+..++. ++++||+|+++++.|++++..+...++..|+++.+++.+|+++|++++++ ++++|++++|+||+|
T Consensus        88 ~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG  165 (403)
T 3cog_A           88 FASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQ  165 (403)
T ss_dssp             ESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred             ECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCC
Confidence            9999999999999 89999999999999999887776667888999999999899999999987 799999999999999


Q ss_pred             cccCHHHHHHHHHhCC-CEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcC
Q 009523          302 RCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG  379 (532)
Q Consensus       302 ~v~dl~~I~~la~~~g-i~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G  379 (532)
                      .+.|+++|+++|+++| +++|+|++|+.+....++.+|+|++++|+||+++|++++++|+++++ +++++.++.....+|
T Consensus       166 ~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g  245 (403)
T 3cog_A          166 KVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG  245 (403)
T ss_dssp             CCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_pred             eeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC
Confidence            9999999999999999 99999999998876677788999999999999999988778999985 788888888777778


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA  459 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~  459 (532)
                      ...+++.+++++++++++..|++++.+|++.++++|++++.|+++.+|+|+++|+++++.+++++.|++++|.+++..+.
T Consensus       246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~  325 (403)
T 3cog_A          246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQH  325 (403)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHH
T ss_pred             CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999989999999999866577


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..+|+++++++.+++|+|+++|++++|+.++|..++.+.+..+|+++++||||+|+|+.+++|++|.++|++
T Consensus       326 ~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~  397 (403)
T 3cog_A          326 AEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA  397 (403)
T ss_dssp             HHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            889999999998899999999999999999999999999999999999999999999999999999999975

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=2.7e-55  Score=466.57  Aligned_cols=384  Identities=31%  Similarity=0.459  Sum_probs=343.4

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|+|...+  ..++++.||||+|++|.|++.++..+.+.++..+|.|+|+++|..++++++|++++|.+.+++++
T Consensus         3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~   80 (421)
T 2ctz_A            3 FETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATA   80 (421)
T ss_dssp             HHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             cceeeeeCCCCCC--cCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEec
Confidence            6799999997653  24799999999999999999988777766666789999999999999999999999998899999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe-CCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-DPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v-d~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      ||++|+..++.+++++||+|+++.+.|+++...+...++..|+++.++ +.+|+++|++++++ +|++|++++|+||+|.
T Consensus        81 sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~  159 (421)
T 2ctz_A           81 SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALN  159 (421)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999998776655567789999999 98899999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCC-CCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC--hHH----HHHHHH--
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS--GKL----VTQIRN--  373 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~-a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~--~~l----i~~l~~--  373 (532)
                      +.|+++|.++|+++|+++|+|+++ +.++..+++..++|++++|+||+++++++.+||+++.+  .++    ++.++.  
T Consensus       160 ~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~  239 (421)
T 2ctz_A          160 IPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ  239 (421)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCB
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhcccc
Confidence            999999999999999999999999 77665677788999999999999999887778888873  222    112210  


Q ss_pred             ------------------------HhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          374 ------------------------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       374 ------------------------~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                                              ....+|..+++..+|+++++++++..|++++.++++++.++|+++|+|..+.||++
T Consensus       240 ~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~  319 (421)
T 2ctz_A          240 PGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGL  319 (421)
T ss_dssp             GGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTS
T ss_pred             chhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCC
Confidence                                    12346778899999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009523          430 KSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL  508 (532)
Q Consensus       430 ~s~p~~~l~~~~~-~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~  508 (532)
                      +++|+|+++++++ ++.|+|++|++++..+.+.+|+++++++++++++|+.++++.+|+.++|..++++.+..+|+++++
T Consensus       320 ~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~  399 (421)
T 2ctz_A          320 PHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEM  399 (421)
T ss_dssp             TTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTE
T ss_pred             CCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCe
Confidence            9999999999999 789999999998644678899999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCHHHHHHHHHHHHh
Q 009523          509 VRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       509 IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ||+|+|+|++++++++|++||+
T Consensus       400 vRlS~g~e~~~~li~~l~~al~  421 (421)
T 2ctz_A          400 VRLSVGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             EEEECCSSCHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHhC
Confidence            9999999999999999999984

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.4e-54  Score=457.33  Aligned_cols=376  Identities=34%  Similarity=0.587  Sum_probs=340.1

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|...+   .+++++||||+++||.|++.+       ....+|.|+|++++..+++|++||+++|.++.+++
T Consensus         7 ~~~t~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~   76 (393)
T 1n8p_A            7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF   76 (393)
T ss_dssp             CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceEEecCCCcc---CCCCcCCCcccccceeecccc-------ccccCcceecCCChhHHHHHHHHHHHhCCCcEEEE
Confidence            47899999997642   479999999999999997642       12257999999999999999999999999899999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+++++. ++++||+|+++.+.|+++...+...++..|+++++++.+| ++|++++++ +|++|++++|+||+|.
T Consensus        77 ~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~  153 (393)
T 1n8p_A           77 SSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLK  153 (393)
T ss_dssp             SCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCC
T ss_pred             CChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcce
Confidence            999999999999 9999999999999999887766556788899999999878 999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhC----CCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhh
Q 009523          303 CVDVKLVSDLCHKK----GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV  377 (532)
Q Consensus       303 v~dl~~I~~la~~~----gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~  377 (532)
                      ++|+++|.++|+++    |+++|+|++|+.+...++..+|+|++++|+||++|++|++++|+++++ +++++.++.....
T Consensus       154 ~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~  233 (393)
T 1n8p_A          154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence            99999999999999    999999999987654567778999999999999999988888999985 7888888877766


Q ss_pred             cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-ceEEeCCCCCCCchhhhHhhhcCC-c-ccEEEEEEc
Q 009523          378 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQMTG-F-GGVVSFEVD  454 (532)
Q Consensus       378 ~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~-v~~V~~Pgl~s~p~~~l~~~~~~g-~-G~~vsf~l~  454 (532)
                      +|..+++..++++.++++++..++++..++++.+.++|++++. +..+.+|+++++|+++++.+++++ . |++++|+++
T Consensus       234 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~  313 (393)
T 1n8p_A          234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK  313 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred             cCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence            7888889999988889999999999999999999999999988 888999999999999999998877 7 999999998


Q ss_pred             CCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          455 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       455 g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +.......|++.++++++++|+|++++++.+|+.++|..++.+.+.++|++++.||||+|+|+++++|+++.++|++
T Consensus       314 ~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~  390 (393)
T 1n8p_A          314 GGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ  390 (393)
T ss_dssp             SCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence            76567899999999999999999999999999999999999888999999999999999999999999999999975

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=4.1e-54  Score=453.47  Aligned_cols=386  Identities=37%  Similarity=0.574  Sum_probs=318.9

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|...+  ..++++.+|+|+++||.+++..+....+.+...+|.|+|+++|..+++++++++++|.++++++
T Consensus         9 ~~~t~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~   86 (398)
T 1gc0_A            9 GFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL   86 (398)
T ss_dssp             CHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcCceeEeCCCCCC--CCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            57899999997653  3478999999999999999887665555566678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +||++|+..++.+++++||+|+++.+.|+++...+...+...|+++.+++..|+++|++++++ ++++|++++|+||+|.
T Consensus        87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  165 (398)
T 1gc0_A           87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMH  165 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCcc
Confidence            999999999999999999999999999999887765556778999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-HHHHHhhh-cCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHV-LGG  380 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~l~~~~~~-~G~  380 (532)
                      +.|+++|.++|+++|+++|+|++|+.+....++..++|+++.|+||+++++++.++|+++++++.++ .++..... +|+
T Consensus       166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~  245 (398)
T 1gc0_A          166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA  245 (398)
T ss_dssp             CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999998765556677899999999999999998777899999987766 56655555 677


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      ..++..++++.++++++..++++..++++.+.++|++++.+..+.+|+++++|+++++.+++++.|++++|++++..+.+
T Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (398)
T 1gc0_A          246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG  325 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHH
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999988889999999998644668


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .++++++++.++++|+|+.++++++|..++|..++.+.+..+|+++++||||+|+++++++|++|.++|++
T Consensus       326 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~  396 (398)
T 1gc0_A          326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA  396 (398)
T ss_dssp             HHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999975

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=4.7e-52  Score=439.35  Aligned_cols=385  Identities=33%  Similarity=0.574  Sum_probs=346.8

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|.. +  ..++++.+|+|+++++.++...+..+.+.+....|.|+|.++|+.++|++++++++|.++++++
T Consensus         7 ~~~t~~~~~~~~-~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~   83 (404)
T 1e5e_A            7 TPATACIHANPQ-K--DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT   83 (404)
T ss_dssp             CHHHHHHHSSCC-C--CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeeecCCC-C--CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEe
Confidence            368999999875 3  2368999999999999999987766555555678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      ++|++|+..++.+++++||+|+++.+.|+++...+...++..|+++++++.+|+++|++++++ ++++|++++|+||||.
T Consensus        84 ~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~  162 (404)
T 1e5e_A           84 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLK  162 (404)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             CChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCc
Confidence            999999999999999999999999999999877665567778999999998899999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHh-CCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-HHHHHhhhc-C
Q 009523          303 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-G  379 (532)
Q Consensus       303 v~dl~~I~~la~~-~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~l~~~~~~~-G  379 (532)
                      +.|+++|+++|++ +|+++|+|++|+.+....++.+|+|+++.|+||+++++++.++|++++++++++ .++...... |
T Consensus       163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g  242 (404)
T 1e5e_A          163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG  242 (404)
T ss_dssp             CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred             ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC
Confidence            9999999999999 999999999998876556677899999999999999998766799999998888 787766555 7


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA  459 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~  459 (532)
                      ...+++.++++.++++++..+++++.++++.+.++|++++.+.++.+|+|+++|+++++.+++++.|+++.|++++..+.
T Consensus       243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  322 (404)
T 1e5e_A          243 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEG  322 (404)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHH
Confidence            77889999999999999988999999999999999999999989999999999999999999889999999999754356


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..+++++++++..++++|+.+|++++|+.++|..++++++...|+++++||||+|.|+.++++++|+++++.
T Consensus       323 ~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          323 AKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA  394 (404)
T ss_dssp             HHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            778999998888899999999999999999999999999999999899999999999999999999999874

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-51  Score=435.28  Aligned_cols=381  Identities=32%  Similarity=0.505  Sum_probs=340.6

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|+++|+|...+   .+++++||||++++|.|++.+++.+.+. ...+|.|+|++++..+++|+++++++|.+++++++
T Consensus         3 ~~t~~~~~~~~~~---~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~   78 (412)
T 2cb1_A            3 YTTLAVLAGLPED---PHGAVGLPIYAVAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVLA   78 (412)
T ss_dssp             HHHHHHHTTCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             ccceeeecCCCcC---CCCCcCCCccccceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            6799999997653   4789999999999999999988777665 45679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      ||++|+..++.+++++||+|+++.+.|+++...+...++..|+++.+++.+ +++|++++++ ++++|++++|+||+|.+
T Consensus        79 ~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~-~~~~v~~~~~~n~~G~~  156 (412)
T 2cb1_A           79 SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSA-KTRAVFVETVANPALLV  156 (412)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCT-TEEEEEEESSCTTTCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhcc-CCeEEEEeCCCCCCccc
Confidence            999999999999999999999999999988776655577789999999864 9999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-----------------
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-----------------  365 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-----------------  365 (532)
                      .|+++|.++|+++|+++|+|++++.+ +...+...++|+++.|+||+++++++.+||+++.++                 
T Consensus       157 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  236 (412)
T 2cb1_A          157 PDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG  236 (412)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred             ccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence            99999999999999999999999877 666777789999999999999998877788887763                 


Q ss_pred             ----------HHHHHHHHHh-hhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCch
Q 009523          366 ----------KLVTQIRNLH-HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE  434 (532)
Q Consensus       366 ----------~li~~l~~~~-~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~  434 (532)
                                ++.+.++... ...|..+++..++++..+++.+..++++..++++++.++|.+++++..+.+|+++++|+
T Consensus       237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~  316 (412)
T 2cb1_A          237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA  316 (412)
T ss_dssp             ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred             cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence                      4455555543 44566678999999888999998888888899999999999999998899999999999


Q ss_pred             hhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec
Q 009523          435 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG  514 (532)
Q Consensus       435 ~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG  514 (532)
                      |+++++++++.|++++|.+ ++.+...+++++++++. +.|+|+.++++++|+.++|..++++++.++|+.++.||+|+|
T Consensus       317 ~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g  394 (412)
T 2cb1_A          317 HRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVG  394 (412)
T ss_dssp             HHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred             HHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEec
Confidence            9999999999999999999 67678889999998888 899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhC
Q 009523          515 VEDFEDLKADVLQALHAI  532 (532)
Q Consensus       515 ~ed~~dli~dL~~AL~~l  532 (532)
                      .++++++|++|.++|+++
T Consensus       395 ~~~~~~~i~~l~~al~~~  412 (412)
T 2cb1_A          395 LEDPLDLLALFEEALEAV  412 (412)
T ss_dssp             SSCHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHhhC
Confidence            999999999999999753

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=3.9e-49  Score=414.98  Aligned_cols=386  Identities=37%  Similarity=0.639  Sum_probs=341.5

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      ++.|+++|+|...+  ..+.++.+|+++++++.++...+....+.+....|.|+|++++..+++++++++++|.++.+++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~   85 (398)
T 2rfv_A            8 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT   85 (398)
T ss_dssp             CHHHHHHHTTCCCC--TTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCceeEeecCCcCc--cCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            46799999997643  2468899999999999999887655544555678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      ++|++|+..++.+++++||+|+++.+.|+++...+...++..|+++..++..|+++|++++++ ++++|++++|+||||.
T Consensus        86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  164 (398)
T 2rfv_A           86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLS  164 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTB
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999999877665555778999999999999999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-HHHHHhhhc-CC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-GG  380 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~l~~~~~~~-G~  380 (532)
                      +.|+++|.++|+++|+++|+|++|+.+....+...++|+++.|+||+++++++.++|++++++++++ .++.....+ |.
T Consensus       165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~  244 (398)
T 2rfv_A          165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  244 (398)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999998776556677899999999999999888666799999998887 676666666 77


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      ..++..++++.++++.+..++++..++++.+.++|++++.+..+.+|+++++|++.+..+++++.|++++|++++..+..
T Consensus       245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  324 (398)
T 2rfv_A          245 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAG  324 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred             CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHH
Confidence            78899999888999988889999999999999999999999999999999999999998887888999999998544567


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..+++.++..++++++|+.++++++|...+|..++.+.+...|+.++.||||+|.+++++++++|.++|++
T Consensus       325 ~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~  395 (398)
T 2rfv_A          325 RRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK  395 (398)
T ss_dssp             HHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence            88999998889999999999999999888898889999999999999999999999999999999999975

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=2e-47  Score=400.16  Aligned_cols=378  Identities=33%  Similarity=0.554  Sum_probs=329.9

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|.|...+  ..++++.||||++++|.|++.+        ...+|.|+||++|...+|+++|+++++.++.+++
T Consensus         4 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~   73 (386)
T 1cs1_A            4 KQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT   73 (386)
T ss_dssp             CHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeEEecCCCcc--ccCCCCCCCccccceeeccccC--------CCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence            36799999997542  3479999999999999987532        2357999999999999999999999999889999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      ++|++|+..++.+++++||+|+++.+.|+++...+...++..|+++..++.+|+++|++++++ ++++|++++|+||||.
T Consensus        74 ~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  152 (386)
T 1cs1_A           74 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLR  152 (386)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCc
Confidence            999999999999999999999999999998777665556778999999998899999999987 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|.++|+++|+++|+|++++.+....+...++|+++.|+||++++++.+++|++++++ ++++.++......+..
T Consensus       153 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~  232 (386)
T 1cs1_A          153 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT  232 (386)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999877554566788999999999999988766679999886 7888888766666667


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      .++..++.+.++++.+..++++..++++.+.++|++++.+..+.+|++.+.|++.++.++.++.|++++|.+++..+...
T Consensus       233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (386)
T 1cs1_A          233 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLR  312 (386)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHH
T ss_pred             CCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHH
Confidence            78888888888888888888899999999999999999998899999999999999988888889999999986545555


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++++..++...+.++|+.++++++|..+.|...+.+.+..+|+.++.||||++.+++++++++|.++|++
T Consensus       313 ~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~  382 (386)
T 1cs1_A          313 RFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA  382 (386)
T ss_dssp             HHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence            6666555544444589999999999988888888888899999899999999999999999999999875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=3e-47  Score=409.95  Aligned_cols=374  Identities=33%  Similarity=0.585  Sum_probs=330.7

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      +.|.++|.+...+   ..+++.+||++++++.++...        ....|.|+|+++|..+++++++++++|.+++++++
T Consensus        87 ~~~~~i~l~~g~~---~~~~~~~~i~~a~~~~~~~~~--------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~  155 (464)
T 1ibj_A           87 VSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFT  155 (464)
T ss_dssp             HHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             cCCeEEECCCCCC---CCCCCCccHHhhhhhhhhccc--------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence            6788899875321   257899999999998866432        23468899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  303 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v  303 (532)
                      +|++|+.+++. ++++||+|+++++.|+++...+...++..|+++++++..|+++|++++++ ++++|++++|+||+|.+
T Consensus       156 sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v  233 (464)
T 1ibj_A          156 SGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQI  233 (464)
T ss_dssp             SHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCC
T ss_pred             CHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEe
Confidence            99999988875 88999999999999999876665567788999999999999999999987 79999999999999999


Q ss_pred             cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCCc
Q 009523          304 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGAL  382 (532)
Q Consensus       304 ~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~~  382 (532)
                      .|+++|+++|+++|+++|+|++|+.+....+..+|+|++++|+||+++|++++++|++++++ ++++.++......|...
T Consensus       234 ~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~  313 (464)
T 1ibj_A          234 SDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL  313 (464)
T ss_dssp             CCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBC
T ss_pred             ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999877655677789999999999999998777889999985 78888887776677778


Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +++.+++++++++++..|+++..+++..++++|++++.+.++.+++|.++|+++++.++.++.|++++|+++ +.+....
T Consensus       314 ~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~~~~~~~  392 (464)
T 1ibj_A          314 APFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSKH  392 (464)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-CHHHHHH
T ss_pred             CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-CHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999998888888999999996 3445667


Q ss_pred             HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          463 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      |++.|+..++++++|+.++++++|+.++|...+.+.+..+|+.+++||||+|+|+.++++++|+++|++
T Consensus       393 ~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~  461 (464)
T 1ibj_A          393 LVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKT  461 (464)
T ss_dssp             HHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHS
T ss_pred             HHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999988888777777778888889999999999999999999999975

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=100.00  E-value=1.6e-40  Score=339.53  Aligned_cols=326  Identities=36%  Similarity=0.589  Sum_probs=288.0

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhc
Q 009523          205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN  284 (532)
Q Consensus       205 ~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~  284 (532)
                      +|++++|+++|.++.++++||++|+..++.+++++||+|+++.++|+++...+...++..|+++.+++..|+++++++++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999999877665444566799999999889999999998


Q ss_pred             CCCeeEEEEeCCCCCCCcccCHHHHHHHHHh-CCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe
Q 009523          285 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG  363 (532)
Q Consensus       285 ~~~tklV~lesP~NptG~v~dl~~I~~la~~-~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~  363 (532)
                      + ++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|+.+....+...++|+++.|+||++++++..++|++++
T Consensus        82 ~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~  160 (331)
T 1pff_A           82 P-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             T-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             C-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEe
Confidence            7 79999999999999999999999999999 999999999998654434557789999999999999887655899999


Q ss_pred             Ch-HHHHHHHHHhhh-cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhh
Q 009523          364 SG-KLVTQIRNLHHV-LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ  441 (532)
Q Consensus       364 ~~-~li~~l~~~~~~-~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~  441 (532)
                      ++ ++++.++..... .|...++..++.+.++++.+..++++..++.+.+.++|++++.+..+.++++.+.|++.++..+
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~  240 (331)
T 1pff_A          161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhh
Confidence            98 888888876655 5667888888888888988888888999999999999999988888999999998999988887


Q ss_pred             cCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009523          442 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL  521 (532)
Q Consensus       442 ~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl  521 (532)
                      .++.|++++|.++ +.+...++++..++...++|+|+.++++++|+...|...+.+.+..+|++++.||||+|.++++++
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~  319 (331)
T 1pff_A          241 MKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDI  319 (331)
T ss_dssp             CSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHH
T ss_pred             CCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHH
Confidence            7788999999997 456677777776666558899999999999988888888988888999989999999999999999


Q ss_pred             HHHHHHHHhhC
Q 009523          522 KADVLQALHAI  532 (532)
Q Consensus       522 i~dL~~AL~~l  532 (532)
                      ++++.++|+++
T Consensus       320 i~~l~~~l~~~  330 (331)
T 1pff_A          320 IDDLKQALDLV  330 (331)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999999763

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=100.00  E-value=6.1e-35  Score=310.51  Aligned_cols=324  Identities=19%  Similarity=0.248  Sum_probs=258.6

Q ss_pred             cCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHH-------H
Q 009523          190 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFI-------E  258 (532)
Q Consensus       190 ~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~---~sSG~~Ai~~al~all~~Gd~VIv~~-~~y~~t~~~~-------~  258 (532)
                      ..+|.|+|.   ..++||+++|+++|++.+++   ++||++|+..++.++++|||+|++++ +.|+++...+       .
T Consensus        65 ~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~  141 (427)
T 3i16_A           65 SSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM  141 (427)
T ss_dssp             CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred             CCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence            456777665   48999999999999998888   89999999999999999999999999 9999887655       1


Q ss_pred             HhcccCCcEEEEeCC-----CCHHHHHHhhc--CCCeeEEEEeC----CCCCCCcccCHHHHHHHHHh--CCCEEEEECC
Q 009523          259 TVLPKMGITATVIDP-----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGT  325 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~-----~dle~Le~al~--~~~tklV~les----P~NptG~v~dl~~I~~la~~--~gi~lIvDet  325 (532)
                      ..++..|+++++++.     .|+++|+++++  + +||+|++++    |+||+|.+.|+++|+++|++  +|+++++|++
T Consensus       142 ~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~-~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a  220 (427)
T 3i16_A          142 GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDE-SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNC  220 (427)
T ss_dssp             CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCT-TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred             HHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCC-CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            446678999999987     58999999998  5 799999999    99999999999999999999  9999999999


Q ss_pred             CCCCC-cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH--hhhcCCCccH-HH-HHHHHHhHHHHHHH
Q 009523          326 FATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGALNP-NA-AYLIIRGMKTLHLR  400 (532)
Q Consensus       326 ~a~~~-~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~--~~~~G~~~~~-~~-a~l~l~~l~tl~~r  400 (532)
                      |+.+. ...+...|+|++++|+||++||+++..+|+++++++++++++..  ...+|..+++ +. +++++++++++..|
T Consensus       221 ~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r  300 (427)
T 3i16_A          221 YGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHI  300 (427)
T ss_dssp             TTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHH
T ss_pred             CccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHH
Confidence            99886 67888899999999999999999888899999999999998873  3334444444 44 78899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC---
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG---  477 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G---  477 (532)
                      ++++.+++..++++|++++.  +| +|+ +++|+|++          +++|.+. +.+.+.+|++.|+.+....|+-   
T Consensus       301 ~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~----------i~~i~l~-~~~~~~~f~~~l~~~~~~~s~~~p~  365 (427)
T 3i16_A          301 SMEALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI----------IQSIKFN-DKDKLIEFCKGIQTGSPIDSFVSCE  365 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CEEEECS-SHHHHHHHHHHHHHTCSSSTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE----------EEEEEEC-CHHHHHHHHHHHhhcCcccccccCc
Confidence            99999999999999999976  67 888 78888765          8999996 5688899999998776544432   


Q ss_pred             -----CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          478 -----GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       478 -----~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                           |++.-+...+.+--..-+.|.-.+..+.+.++...-|-.+.+...-.+.+|++++
T Consensus       366 ~~~~~gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
T 3i16_A          366 PWDMPGYTDQVIMAAGAFIQGSSIELSADAPIREPYIAYLQGGLTFDHAKIGILIALSRI  425 (427)
T ss_dssp             CBCC---CCCEEEEECCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCceeeccCcCCCCccccccCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHHH
Confidence                 1111111100000000011111122345678888888888888888888888764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.5e-34  Score=305.83  Aligned_cols=324  Identities=19%  Similarity=0.233  Sum_probs=257.1

Q ss_pred             cCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHH-------
Q 009523          190 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE-------  258 (532)
Q Consensus       190 ~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~---~sSG~~Ai~~al~all~~Gd~VIv~~-~~y~~t~~~~~-------  258 (532)
                      ..+|.|+|+   ..++||+++|+++|++.+++   ++||++|+..++.++++|||+|++++ +.|+++..++.       
T Consensus        66 ~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~  142 (427)
T 3hvy_A           66 SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV  142 (427)
T ss_dssp             CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred             CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence            356777776   48999999999999998888   89999999999999999999999999 99998775551       


Q ss_pred             HhcccCCcEEEEeCC----CCHHHHHHhhc--CCCeeEEEEeC----CCCCCCcccCHHHHHHHHHh--CCCEEEEECCC
Q 009523          259 TVLPKMGITATVIDP----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTF  326 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~----~dle~Le~al~--~~~tklV~les----P~NptG~v~dl~~I~~la~~--~gi~lIvDet~  326 (532)
                      ..++..|++++.++.    .|+++|+++++  + +||+|++++    |+||+|.+.|+++|+++|++  +|+++++|+++
T Consensus       143 ~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~  221 (427)
T 3hvy_A          143 GSLREYGVKYKMVDLKDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY  221 (427)
T ss_dssp             CCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred             hHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence            346678999999987    79999999998  5 799999999    99999999999999999999  89999999999


Q ss_pred             CCCC-cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCcc--HHHHHHHHHhHHHHHHHH
Q 009523          327 ATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALN--PNAAYLIIRGMKTLHLRV  401 (532)
Q Consensus       327 a~~~-~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~--~~~a~l~l~~l~tl~~r~  401 (532)
                      +.+. ...+...|+|++++|+||+++|+++.+||+++++++++++++...  ...|...+  ...+++++++++++..|+
T Consensus       222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~  301 (427)
T 3hvy_A          222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVT  301 (427)
T ss_dssp             CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHH
Confidence            9886 578888999999999999999998888999999999999988743  22332222  233788899999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeec------
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS------  475 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs------  475 (532)
                      +++.+|+..++++|++++.  +| +|+ +++|+|++          +++|.+. +.+.+.+|++.|+.+....|      
T Consensus       302 ~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~l----------i~~~~l~-~~~~~~~f~~~l~~~~~~~s~~~p~~  366 (427)
T 3hvy_A          302 IEAVKGAVFCARIMELAGF--DV-LPK-YNDKRTDI----------IQAIKFN-DEKKLIDFIKGIQTASPVDSFVQCEA  366 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------EEEEECS-SHHHHHHHHHHHHHTCSSSTTCCC--
T ss_pred             HHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCceE----------EEEEeCC-CHHHHHHHHHHhccccccccccCCCC
Confidence            9999999999999999975  56 788 77777654          8999996 56888999999987654333      


Q ss_pred             --CCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          476 --FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       476 --~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                        +.|+++.+...+.+--..-+.|.-.+-.+.+.++...-|-.+.+...-.+.+|++++
T Consensus       367 ~~~~Gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
T 3hvy_A          367 WDMPGYEDKVIMAAGTFVQGASIELSADAPIREPYIGYLQGGLTFDHAKLGVLIALSKL  425 (427)
T ss_dssp             --------CEEEECCCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcCceeeeccccCCCccccccCCCCCCCCeeEEEcCCccHHHHHHHHHHHHHHh
Confidence              234443332211110001111111222355778889999889998888999988764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=100.00  E-value=7.7e-34  Score=300.63  Aligned_cols=320  Identities=17%  Similarity=0.191  Sum_probs=253.2

Q ss_pred             cCCCCCCCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHH------H
Q 009523          190 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------T  259 (532)
Q Consensus       190 ~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~---~sSG~~Ai~~al~all~~Gd~VIv~~-~~y~~t~~~~~------~  259 (532)
                      ..+|.|+|.   ..+.||+++|+++|++.+++   ++||++|+..++.+++++||+|++++ +.|.++...+.      .
T Consensus        51 ~~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~  127 (409)
T 3jzl_A           51 STGYGYDDE---GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQG  127 (409)
T ss_dssp             CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSS
T ss_pred             CcCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhh
Confidence            456777664   58899999999999998888   89999999999999999999999998 99998765542      3


Q ss_pred             hcccCCcEEEEeCC-----CCHHHHHHhhcCCCeeEEEEeC----CCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCC
Q 009523          260 VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFAT  328 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~-----~dle~Le~al~~~~tklV~les----P~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~  328 (532)
                      .++..|+++++++.     .|+++|++++++ +|++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+.
T Consensus       128 ~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~  206 (409)
T 3jzl_A          128 SLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE  206 (409)
T ss_dssp             CTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred             HHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence            56778999999987     689999999987 799999999    99999999999999999999  9999999999998


Q ss_pred             CC-cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh------cCCCccHHHHHHHHHhHHHHHHHH
Q 009523          329 PL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRV  401 (532)
Q Consensus       329 ~~-~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~------~G~~~~~~~a~l~l~~l~tl~~r~  401 (532)
                      ++ ..++...|+|++++|+||+++|+++.+||+++++++++++++.....      .|..+.  .+++++++++++..|+
T Consensus       207 ~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~--~~~~~l~gl~~~~~r~  284 (409)
T 3jzl_A          207 FVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLY--SLLEMYQGFFLAPHVT  284 (409)
T ss_dssp             TTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHH
T ss_pred             ccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHH--HHHHHHHHHhhHHHHH
Confidence            76 56788899999999999999999888899999999999998764321      222222  2466789999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC-----
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF-----  476 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~-----  476 (532)
                      +++.+++..++++|++++.  +| +|+ +++|+|++          +++|.++ +.+.+.+|++.|+.+....|+     
T Consensus       285 ~~~~~~a~~la~~L~~~g~--~v-~p~-~~~~~~~~----------i~~i~l~-~~~~~~~~~~~L~~~~~~~s~~~p~~  349 (409)
T 3jzl_A          285 AQAIKGARFTAAMLAEFGV--EA-DPV-WDAPRTDL----------IQSVSFH-NKEKMVAFAQAIQAASPVNAHVLPIG  349 (409)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CCEEECS-CHHHHHHHHHHHHHTSSSSTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCC--cc-cCC-CCCCCccE----------EEEEEeC-CHHHHHHHHHHHHhcCcccccCCCCC
Confidence            9999999999999999975  56 787 77777654          8899996 568889999999876544332     


Q ss_pred             ---CCcccccccCccccc-cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          477 ---GGCESIVDQPAIMSY-WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       477 ---G~~~sl~~~pa~~s~-~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                         .|++.-+...+. ++ ..-+.|.-.+-.+.+.++...-|-.+.+...-.+.+|+++
T Consensus       350 ~~~~gy~~~~~~~~~-~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (409)
T 3jzl_A          350 AYMPGYEDDVIMAAG-TFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQK  407 (409)
T ss_dssp             BCCTTCSSCEEEECC-CSSTTCSSSCEEEEESSTTTEEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCceeEecc-ccCCCcceeecCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHh
Confidence               122222111111 01 0001111112234567888888988888888888888875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.5e-27  Score=249.69  Aligned_cols=303  Identities=14%  Similarity=0.086  Sum_probs=216.1

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      |.|++...+..+++++++++++|.+  +++++++|++++.+++.++   +++||+|+++.++|+++...+....+..|.+
T Consensus        61 ~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~  140 (406)
T 3cai_A           61 HPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK  140 (406)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe
Confidence            4454445678899999999999975  5777778889999999887   7899999999999998766554444446888


Q ss_pred             EEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCc
Q 009523          268 ATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGAD  340 (532)
Q Consensus       268 v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaD  340 (532)
                      +.+++.+      |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|
T Consensus       141 v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d  219 (406)
T 3cai_A          141 VKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDAD  219 (406)
T ss_dssp             EEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCS
T ss_pred             EEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCC
Confidence            8888765      89999999987 799999999999999999999999999999999999999875432 333346899


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh---------hcCCCccHHHHHHHHHhHHH---------------
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------VLGGALNPNAAYLIIRGMKT---------------  396 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~---------~~G~~~~~~~a~l~l~~l~t---------------  396 (532)
                      +++.|+||++|+.   +||++++++++++.++....         ...++.++.....+...++.               
T Consensus       220 ~~~~s~~K~~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  296 (406)
T 3cai_A          220 VVTVNAHAWGGPP---IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER  296 (406)
T ss_dssp             EEEEEGGGGTSCS---CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred             EEEeehhhhcCCC---cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence            9999999988743   24399999888776654321         11233444433222222322               


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          397 ----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       397 ----l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                          +....++..++++++.+.|++.|++. +..|.              ...+++++|.+++  .....+.+.|...++
T Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~L~~~gi  359 (406)
T 3cai_A          297 LAVSMQSADAYLNRVFDYLMVSLRSLPLVM-LIGRP--------------EAQIPVVSFAVHK--VPADRVVQRLADNGI  359 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCTTEE-ECCCC--------------SSBCSEEEEEETT--BCHHHHHHHHHHTTE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCeE-EcCCc--------------cccCCEEEEEECC--cCHHHHHHHHHHCCc
Confidence                33444555677888888998877653 33221              0134589999874  223445555555577


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCC--CCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIM--DNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~--~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      .++.|....                ....+|..  .+.||||++..+.++.++.+.++|+++
T Consensus       360 ~v~~g~~~~----------------~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          360 LAIANTGSR----------------VLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             ECEECCSCH----------------HHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             EEecCChHH----------------HHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence            777664110                11123432  478999999887777788888887653

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.96  E-value=8e-27  Score=242.52  Aligned_cols=284  Identities=10%  Similarity=0.098  Sum_probs=213.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+..    .+...|.++..++..|+++|
T Consensus        83 ~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l  158 (384)
T 1bs0_A           83 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLE----AASLSPSQLRRFAHNDVTHL  158 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH----HHHTSSSEEEEECTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHH----HHHHcCCCEEEeCCCCHHHH
Confidence            47889999999999999889999999999999999999999999999999987654    34456899999998899999


Q ss_pred             HHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-------ccccccCCcEEEECCcccc
Q 009523          280 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------QKALSLGADLVLHSATKFI  350 (532)
Q Consensus       280 e~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-------~~~l~~gaDivv~S~sK~l  350 (532)
                      ++++++.  ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+..       ......+.|+++.|+||++
T Consensus       159 ~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~  238 (384)
T 1bs0_A          159 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF  238 (384)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred             HHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh
Confidence            9998763  389999999999999999999999999999999999999876531       1122345899999999999


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhCCCceE
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAHPKVKR  423 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl-----~~r~~~~~~~a~~la~~L~~~p~v~~  423 (532)
                      ++.    ||++++++++++.++....  ..+...++..++.+...++.+     ....++..++++++.+.|+++ ++. 
T Consensus       239 ~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-  312 (384)
T 1bs0_A          239 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT-  312 (384)
T ss_dssp             SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE-
T ss_pred             hcc----CcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc-
Confidence            954    4999999999888876432  223346666665555555443     345566667888888888876 332 


Q ss_pred             EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcC
Q 009523          424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG  503 (532)
Q Consensus       424 V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~g  503 (532)
                      +. |                +.|+++++.++. ......+.+.|...++.+..|.....                    .
T Consensus       313 ~~-~----------------~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--------------------~  354 (384)
T 1bs0_A          313 LA-D----------------SCSAIQPLIVGD-NSRALQLAEKLRQQGCWVTAIRPPTV--------------------P  354 (384)
T ss_dssp             EC-S----------------CCSSBCCEEEES-HHHHHHHHHHHHHTTEECCEECTTSS--------------------C
T ss_pred             cc-C----------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCcEEEeecCCCC--------------------C
Confidence            21 2                135678888863 24456677776655777765532110                    0


Q ss_pred             CCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          504 IMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       504 i~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..++.+||+++....++.++.+.++|++
T Consensus       355 ~~~~~~Ri~~~~~~~~~~i~~~~~~l~~  382 (384)
T 1bs0_A          355 AGTARLRLTLTAAHEMQDIDRLLEVLHG  382 (384)
T ss_dssp             TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence            1257899999987666666777777654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.96  E-value=2.3e-27  Score=248.56  Aligned_cols=305  Identities=16%  Similarity=0.155  Sum_probs=215.4

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      +.|+....+...+++++|++++|.   ++++++++|++|+.+++.++    +++||+|+++.++|+++...+....+..|
T Consensus        64 ~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g  143 (420)
T 1t3i_A           64 HQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG  143 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC
Confidence            334433356788999999999998   57888899999999999999    89999999999999997544444555678


Q ss_pred             cEEEEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCC
Q 009523          266 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA  339 (532)
Q Consensus       266 v~v~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~ga  339 (532)
                      +++..++.     .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++
T Consensus       144 ~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~  222 (420)
T 1t3i_A          144 AVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDC  222 (420)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred             cEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCC
Confidence            88888875     479999999987 799999999999999999999999999999999999999876533 23445689


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--------------------cCCCccHHHHHHHHH-hHHH--
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------LGGALNPNAAYLIIR-GMKT--  396 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--------------------~G~~~~~~~a~l~l~-~l~t--  396 (532)
                      |+++.|+||.+|+.|   +|++++++++++.++.....                    +....++..+++++. .++.  
T Consensus       223 di~~~s~sK~~~~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~  299 (420)
T 1t3i_A          223 DWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT  299 (420)
T ss_dssp             SEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEehhhhcCCCc---eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence            999999999888765   78999999888877543211                    111122333333222 3333  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          397 ---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       397 ---l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                         +....++..++++++.+.|++.+++. +..|...   .        .+.|+++.|.+++  .....+.+.|...++.
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~---~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~  365 (420)
T 1t3i_A          300 DLGMENIHNYEVELTHYLWQGLGQIPQLR-LYGPNPK---H--------GDRAALASFNVAG--LHASDVATMVDQDGIA  365 (420)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTCTTEE-EESCCGG---G--------SCBCSEEEEEETT--BCHHHHHHHHHTTTEE
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCeE-EeCCCcc---c--------cccCCEEEEEECC--CCHHHHHHHHHHCCeE
Confidence               33455666678888999998877664 3333200   0        0247789998874  2234566666666888


Q ss_pred             ecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       474 vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +..|..+..   |           ....+|. ++.||||++....++.++.+.++|+
T Consensus       366 v~~~~~~~~---~-----------~~~~~g~-~~~iRis~~~~~~~~~i~~~~~~l~  407 (420)
T 1t3i_A          366 IRSGHHCTQ---P-----------LHRLFDA-SGSARASLYFYNTKEEIDLFLQSLQ  407 (420)
T ss_dssp             CBCSCTTCH---H-----------HHHHTTC-CCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred             Eeeccccch---H-----------HHHhcCC-CCeEEEecCCCCCHHHHHHHHHHHH
Confidence            777643211   0           0112232 5789999997554444444444443

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=3.1e-27  Score=248.62  Aligned_cols=305  Identities=18%  Similarity=0.205  Sum_probs=212.7

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhcc----CCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~----~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      +++...+..+++++++++++|.+  +++++++|++|+.+++.++.+    +||+|+++.++|+++...+.. +...|+++
T Consensus        62 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~  140 (423)
T 3lvm_A           62 FGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEV  140 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEE
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEE
Confidence            33344566789999999999986  788889999999999998874    899999999999987665533 36678999


Q ss_pred             EEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEE
Q 009523          269 TVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLV  342 (532)
Q Consensus       269 ~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDiv  342 (532)
                      ..++.+     |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|++
T Consensus       141 ~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~  219 (423)
T 3lvm_A          141 TYLAPQRNGIIDLKELEAAMRD-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLM  219 (423)
T ss_dssp             EEECCCTTSCCCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEE
T ss_pred             EEeccCCCCccCHHHHHHhcCC-CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEE
Confidence            888765     89999999987 799999999999999999999999999999999999999876533 44455689999


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-------hcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  411 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-------~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~l  411 (532)
                      +.|+||.+|+.+   .|+++++++.++.+.....       ...++.+......+...++.    +....++..++++.+
T Consensus       220 ~~s~sK~~g~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l  296 (423)
T 3lvm_A          220 SFSGHKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRL  296 (423)
T ss_dssp             EEESTTTTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechHHhcCCCC---eEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888765   6788887765554433211       11233344443333333332    344455666778888


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .+.|++.|++..+..+.              .+.++++.|.+++  .....+.+.|..  +.+..|..++...       
T Consensus       297 ~~~L~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~l~~~l~~--i~v~~g~~~~~~~-------  351 (423)
T 3lvm_A          297 WNGIKDIEEVYLNGDLE--------------HGAPNILNVSFNY--VEGESLIMALKD--LAVSSGSACTSAS-------  351 (423)
T ss_dssp             HHHHTTSTTEEEESCST--------------TBCTTEEEEEETT--SCHHHHHHHTTT--EECBCCCC------------
T ss_pred             HHHHhcCCCEEEeCCcc--------------ccCCCeEEEEeCC--CCHHHHHHHHhh--heeccCccccCCC-------
Confidence            88888777764332221              1245688888864  234566666665  7777775543211       


Q ss_pred             cCCCHHHHHhcCCC----CCeEEEEecCCC----HHHHHHHHHHHHh
Q 009523          492 WDLSQSERLKYGIM----DNLVRFSFGVED----FEDLKADVLQALH  530 (532)
Q Consensus       492 ~~~~~~~~~~~gi~----~~~IRlSvG~ed----~~dli~dL~~AL~  530 (532)
                       ..+......+|+.    ++.|||+++...    .+.+++.|.++++
T Consensus       352 -~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~  397 (423)
T 3lvm_A          352 -LEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG  397 (423)
T ss_dssp             -CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -ccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence             0112233445554    489999999644    4445555555543

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.96  E-value=2.4e-27  Score=244.97  Aligned_cols=285  Identities=15%  Similarity=0.226  Sum_probs=209.6

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +.+|+++...+|++++++++|.   ++++++++|++|+.+++.+++++||+|+++.++|.+....    ++..|.++..+
T Consensus        61 ~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v  136 (367)
T 3euc_A           61 LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGV  136 (367)
T ss_dssp             TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHH----HHTTTCEEEEE
T ss_pred             hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEe
Confidence            4456667789999999999997   4566667777999999999999999999999999986543    45568888887


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhC--CCEEEEECCCCCCCcc----ccccc
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLNQ----KALSL  337 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~--gi~lIvDet~a~~~~~----~~l~~  337 (532)
                      +.     .|+++|+++++++++++|++++|+||||.+.+   +++|+++|++|  |+++|+|++|+.....    .....
T Consensus       137 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  216 (367)
T 3euc_A          137 PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDF  216 (367)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhC
Confidence            63     38999999997646999999999999999976   66777889999  9999999998753211    11234


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~  414 (532)
                      +.++++.|+||+ +.+| ...|++++++++++.++.....+  ..++..++.+...++   .+..+.++..++++++.+.
T Consensus       217 ~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  292 (367)
T 3euc_A          217 GNLLVMRTVSKL-GLAG-IRLGYVAGDPQWLEQLDKVRPPY--NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEG  292 (367)
T ss_dssp             TTEEEEEECCCT-TSCS-CCEEEEEECHHHHHHHGGGCCSS--CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecchhh-cccc-cCceeeeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999 5554 46899999999988887655433  345665555554443   3556666777888899999


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      |+++|++. + +|.                .|.++++.++ +   ...+.+.|...++.++.|+.+.             
T Consensus       293 l~~~~g~~-~-~~~----------------~~~~~~~~~~-~---~~~l~~~l~~~gi~v~~~~~~~-------------  337 (367)
T 3euc_A          293 MAAHGGVT-V-FPS----------------AANFLLARVP-D---AAQTFDRLLARKVLIKNVSKMH-------------  337 (367)
T ss_dssp             HHTSTTCE-E-CCC----------------SSSEEEEECS-C---HHHHHHHHHTTTEECEECGGGC-------------
T ss_pred             HHhCCCcE-E-CCC----------------CCeEEEEECC-C---HHHHHHHHHHCCeEEEECCccC-------------
Confidence            99887775 3 332                3668888886 3   3455666666688877765421             


Q ss_pred             CHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 009523          495 SQSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQALH  530 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL~  530 (532)
                              +..++.||||++. ++.+.+++.|+++++
T Consensus       338 --------~~~~~~iRis~~~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          338 --------PLLANCLRVTVSTPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             --------GGGTTEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             --------CCCCCEEEEecCCHHHHHHHHHHHHHHhc
Confidence                    0125799999994 334555666665543

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=1.1e-27  Score=247.04  Aligned_cols=307  Identities=14%  Similarity=0.128  Sum_probs=209.1

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all----~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .|.|++...+..+++++++++++|.+  +++++++|++|+.+++.++.    ++||+|+++++.|+++...+. .+...|
T Consensus        34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g  112 (382)
T 4hvk_A           34 VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQG  112 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcC
Confidence            35556666788889999999999975  46777778899999999987    999999999999998776553 345679


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCC
Q 009523          266 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA  339 (532)
Q Consensus       266 v~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~ga  339 (532)
                      +++..++.+     |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+ +|+|++++.+.. .+....++
T Consensus       113 ~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~  190 (382)
T 4hvk_A          113 FEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGA  190 (382)
T ss_dssp             CEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTC
T ss_pred             CEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCC
Confidence            999988754     89999999987 79999999999999999999999999999999 999999876533 33334689


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-------hhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  408 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a  408 (532)
                      |+++.|+||++|+.|   .|+++.+++.  .++...       ....++.+....+.+..+++    .+....++..+++
T Consensus       191 d~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  265 (382)
T 4hvk_A          191 DMLTISSNDIYGPKG---VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLR  265 (382)
T ss_dssp             SEEEEESGGGTSCTT---CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeHHHhcCCCc---eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999887665   4555554432  111111       11123334444443333333    2344455666777


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      +++.+.|++.|++. +..|.-             .+.+++++|.+++.  ....+.+.|...++.++.|..++....   
T Consensus       266 ~~l~~~L~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~---  326 (382)
T 4hvk_A          266 DRIIDNVLKIEESY-LNGHPE-------------KRLPNNVNVRFSYI--EGESIVLSLDMAGIQASTGSACSSKTL---  326 (382)
T ss_dssp             HHHHHHHTTSTTEE-ECSCSS-------------SBCTTEEEEEETTC--CHHHHHHHHHHTTCBCBCC-----------
T ss_pred             HHHHHHHhcCCCeE-EeCCcc-------------ccCCCEEEEEECCC--CHHHHHHHHHHCCEEEeeCCccCCCCC---
Confidence            88888888777653 322210             12356889988752  234556666666888888865432111   


Q ss_pred             ccccCCCHHHHHhcCCC----CCeEEEEecCCC----HHHHHHHHHHHHh
Q 009523          489 MSYWDLSQSERLKYGIM----DNLVRFSFGVED----FEDLKADVLQALH  530 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~----~~~IRlSvG~ed----~~dli~dL~~AL~  530 (532)
                           .+......+|++    ++.|||+++...    .+++++.|.++++
T Consensus       327 -----~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~  371 (382)
T 4hvk_A          327 -----QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             -----CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----cchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence                 112223445554    589999999644    4455555555544

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.96  E-value=3e-27  Score=244.09  Aligned_cols=282  Identities=13%  Similarity=0.188  Sum_probs=210.9

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+++...+|++++|+++|.  ++++++++|++|+..++.+++++||+|+++.++|.+...    .++..|.++..++
T Consensus        59 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~  134 (365)
T 3get_A           59 AHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEI----YAKQCGAKCYKTQ  134 (365)
T ss_dssp             TTSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHH----HHHHHTCEEEECS
T ss_pred             hccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHH----HHHHcCCEEEEEe
Confidence            4455666568999999999995  578888888999999999999999999999999987653    3455688998888


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHH--hCCCEEEEECCCCCCC---c----cccc---
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL---N----QKAL---  335 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~--~~gi~lIvDet~a~~~---~----~~~l---  335 (532)
                      .     .|+++|++++++ ++++|++++|+||||.+.|++++.++++  ++|+++|+|++|+...   .    ....   
T Consensus       135 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  213 (365)
T 3get_A          135 SITHNLDEFKKLYETHKD-EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELI  213 (365)
T ss_dssp             SSSCCHHHHHHHHHHTTT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHhCC-CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHh
Confidence            6     468899999986 7999999999999999999999888888  6799999999976322   1    1121   


Q ss_pred             -ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Q 009523          336 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM  411 (532)
Q Consensus       336 -~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~l  411 (532)
                       ..+.++++.|+||.+|.+| ...|++++++++++.++.....++  .++..++.+...+   +.+..+.++..++++++
T Consensus       214 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  290 (365)
T 3get_A          214 KEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAFYKLRAPFN--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELY  290 (365)
T ss_dssp             HHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHHHHhcCCCC--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence             2367799999999998665 357888889999998887665443  4555555544444   34556666777888889


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .+.|+++ ++. + +|.                .|+++++.+++.  ....+.+.|...++.++.|..+           
T Consensus       291 ~~~l~~~-g~~-~-~~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~-----------  338 (365)
T 3get_A          291 KEFAKKH-NIK-I-IDS----------------YTNFITYFFDEK--NSTDLSEKLLKKGIIIRNLKSY-----------  338 (365)
T ss_dssp             HHHHHHT-TCE-E-CCC----------------SSSEEEEECSSS--CHHHHHHHHHTTTEECEECGGG-----------
T ss_pred             HHHHHhC-CCE-E-CCC----------------CCeEEEEECCCC--CHHHHHHHHHHCCEEEEECccC-----------
Confidence            9999887 443 2 221                356789998753  3456666666668877766431           


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQAL  529 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~-ed~~dli~dL~~AL  529 (532)
                                 +  ++.+|||++. ++.+.+++.|++++
T Consensus       339 -----------~--~~~iRis~~~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          339 -----------G--LNAIRITIGTSYENEKFFTEFDKIL  364 (365)
T ss_dssp             -----------T--CSEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             -----------C--CCEEEEEcCCHHHHHHHHHHHHHHh
Confidence                       2  5789999994 34555666666554

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.96  E-value=9.3e-27  Score=240.19  Aligned_cols=281  Identities=15%  Similarity=0.184  Sum_probs=206.6

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+++...++++++++++|.  ++++++++|++|+..++.+++++||+|+++.++|.+...    .++..|.++..++
T Consensus        61 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~  136 (363)
T 3ffh_A           61 TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ----NALIEGAEVREIP  136 (363)
T ss_dssp             CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHH----HHHHHTCEEEEEE
T ss_pred             hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHH----HHHHcCCEEEEec
Confidence            4566777889999999999996  568888888999999999999999999999999987543    3455688888887


Q ss_pred             CC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCCc------cc-ccccC
Q 009523          273 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN------QK-ALSLG  338 (532)
Q Consensus       273 ~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~~------~~-~l~~g  338 (532)
                      .+     |+++|++++++ ++++|++++|+||||.+.|++++.++++.+  |+++|+|++|+....      .. ....+
T Consensus       137 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (363)
T 3ffh_A          137 LLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK  215 (363)
T ss_dssp             CCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred             CCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence            65     89999999987 799999999999999999999999999887  999999999873221      11 11234


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~L  415 (532)
                      .++++.|+||.+|.+| ...|++++++++++.++.....  ...++..++.+...+   +.+..+.++..++++++.+.|
T Consensus       216 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  292 (363)
T 3ffh_A          216 NLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVRPP--FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA  292 (363)
T ss_dssp             TEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTCCS--CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhCCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999998665 3568888899999988876543  345666666655555   445566667778888899999


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++++++. + +|.                .|+++++.++.+   ...+.+.|...++.++.|..+               
T Consensus       293 ~~~~g~~-~-~~~----------------~~~~~~~~~~~~---~~~~~~~l~~~gi~v~~g~~~---------------  336 (363)
T 3ffh_A          293 KRFEKVK-L-YPA----------------NGNFVLIDLGIE---AGTIFSYLEKNGYITRSGAAL---------------  336 (363)
T ss_dssp             HHCTTCE-E-CCC----------------CSSEEEEECSSC---HHHHHHHHHHTTEECEETTTT---------------
T ss_pred             hhCCCce-E-CCC----------------CCeEEEEECCCC---HHHHHHHHHHCCeEEEeCccC---------------
Confidence            8876654 2 222                356889998753   344555555457777766432               


Q ss_pred             HHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                             |. ++.||||++.   ++.++.+.++|+
T Consensus       337 -------~~-~~~iRis~~~---~~~i~~~~~~l~  360 (363)
T 3ffh_A          337 -------GF-PTAVRITIGK---EEDNSAVIALLE  360 (363)
T ss_dssp             -------TC-TTEEEEECCC---HHHHHHHHHHHH
T ss_pred             -------CC-CCeEEEECCC---HHHHHHHHHHHH
Confidence                   11 5799999993   233344444443

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.96  E-value=6.4e-27  Score=244.69  Aligned_cols=284  Identities=15%  Similarity=0.121  Sum_probs=212.9

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+++..    .++..|+++..++..|+++|
T Consensus        89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l  164 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH----HHHHcCCceEEECCCCHHHH
Confidence            68889999999999999888999999999999999999999999999999987653    34567899999988899999


Q ss_pred             HHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-c--------cccccCCcEEEEC
Q 009523          280 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q--------KALSLGADLVLHS  345 (532)
Q Consensus       280 e~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~--------~~l~~gaDivv~S  345 (532)
                      ++++++.     ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.++. .        ..+..+.|+++.|
T Consensus       165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s  244 (401)
T 1fc4_A          165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence            9988641     589999999999999999999999999999999999999863321 1        1112357999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl~---~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +||++++..   ||++++++++++.++....  .++...++..++.+...++.+.   ...++..++++++.+.|+++ +
T Consensus       245 ~sK~~~~~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  320 (401)
T 1fc4_A          245 LGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-G  320 (401)
T ss_dssp             SSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             chhhccCCC---CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-C
Confidence            999995443   5999999999988876542  2355667777777776776653   45666778888888888876 3


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +. + +|                +.|+++++.+++ ......+.+.|...++.+..|..+..            +     
T Consensus       321 ~~-~-~~----------------~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~------------~-----  364 (401)
T 1fc4_A          321 FT-L-AG----------------ADHAIIPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV------------P-----  364 (401)
T ss_dssp             CC-B-CC----------------SSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS------------C-----
T ss_pred             Cc-c-cC----------------CCCCEEEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC------------C-----
Confidence            32 1 12                147799999974 23455666666555777665533210            0     


Q ss_pred             hcCCCCCeEEEEecCCCH----HHHHHHHHHHHh
Q 009523          501 KYGIMDNLVRFSFGVEDF----EDLKADVLQALH  530 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~ed~----~dli~dL~~AL~  530 (532)
                         -.++.+||+++....    +.+++.|.++++
T Consensus       365 ---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  395 (401)
T 1fc4_A          365 ---KGQARIRTQMSAAHTPEQITRAVEAFTRIGK  395 (401)
T ss_dssp             ---TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence               024689999996433    444455555544

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.96  E-value=4.2e-27  Score=243.85  Aligned_cols=285  Identities=13%  Similarity=0.154  Sum_probs=205.6

Q ss_pred             chhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          200 NPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+...+|+++++++++.   +++++++||++|+..++.+++++||+|+++.+.|+++...    +...|.++..++.+  
T Consensus        62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~  137 (375)
T 3op7_A           62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDI----PKSLGAEVDLWQIEEE  137 (375)
T ss_dssp             TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHH----HHHTTCEEEEEEEEGG
T ss_pred             CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEecccc
Confidence            45567899999998742   6788888889999999999999999999999999986543    44567777777632  


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc---c-ccccCCcEE
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K-ALSLGADLV  342 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~---~-~l~~gaDiv  342 (532)
                           |+++|++++++ ++++|++++|+||||.+.|   +++|.++|++||+++|+|++|+.....   . ....+.+++
T Consensus       138 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~  216 (375)
T 3op7_A          138 NGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA  216 (375)
T ss_dssp             GTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred             CCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence                 89999999987 7999999999999999999   999999999999999999998763221   1 112356799


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHhC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL----RVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~----r~~~~~~~a~~la~~L~~~  418 (532)
                      +.|+||.++.+| ..+|++++++++++.++......+...++..++++...++....    +.++..++++.+.+.|+++
T Consensus       217 ~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~  295 (375)
T 3op7_A          217 VNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE  295 (375)
T ss_dssp             EEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999998555 45789999999999988766655555667766666555554332    2333457788888889887


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCccccccCCCHH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      +.+..+ .|.                .|.++++.++.+ .....+...+ +..++.+..|..+.                
T Consensus       296 ~~~~~~-~~~----------------~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~~g~~~~----------------  341 (375)
T 3op7_A          296 PLVSYI-RPA----------------VVSTSFVKIAVD-MPMEDFCLQLLQEHGVLLVPGNRFE----------------  341 (375)
T ss_dssp             TTEEEC-CCS----------------SSSCEEEEECCS-SCHHHHHHHHHHHHCEECEEGGGGT----------------
T ss_pred             CCceEe-cCC----------------CeEEEeEEcCCC-CCHHHHHHHHHHhCCEEEeChhhhC----------------
Confidence            776432 221                234556666532 1233444443 34466665553321                


Q ss_pred             HHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          498 ERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                             .++.+||+++..  +.++.++.|.+++++
T Consensus       342 -------~~~~iRi~~~~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          342 -------RDGYVRLGFACEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             -------CTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred             -------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence                   157899999975  345556666666653

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.96  E-value=2.1e-27  Score=243.23  Aligned_cols=284  Identities=18%  Similarity=0.178  Sum_probs=199.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----C
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----~  274 (532)
                      .++...+||++||+++|.++.++++||++|+.+++.+++++||+|++++++|.+++... ......|+++..++.    .
T Consensus        36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~  114 (347)
T 1jg8_A           36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM  114 (347)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCcc
Confidence            57889999999999999998999999999999999999999999999999997654211 123445777777621    2


Q ss_pred             CHHHHHHhhcCC-----CeeEEEEeCCCCCC-CcccCH---HHHHHHHHhCCCEEEEECCCCC------CCcccccccCC
Q 009523          275 DMEGLEAALNNN-----NVSLFFTESPTNPF-LRCVDV---KLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGA  339 (532)
Q Consensus       275 dle~Le~al~~~-----~tklV~lesP~Npt-G~v~dl---~~I~~la~~~gi~lIvDet~a~------~~~~~~l~~ga  339 (532)
                      |+++|++++++.     ++++|++++|+||| |.++|.   ++|.++|+++|+++|+|+++..      +.....+..++
T Consensus       115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~  194 (347)
T 1jg8_A          115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  194 (347)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc
Confidence            899999999751     59999999999999 999875   6888999999999999998531      12222333468


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~--~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~  417 (532)
                      |.++.|+||+++++   +||+++++++++++++..+..+++..  +...++++..+++....++++..++++++.+.|++
T Consensus       195 d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  271 (347)
T 1jg8_A          195 DSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  271 (347)
T ss_dssp             SEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88889999999865   46678889989888876655555433  44555555556665444556666778888888887


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      + ++. +..+               ...++++++.++........|.+.|...++.++.+                    
T Consensus       272 ~-~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~--------------------  314 (347)
T 1jg8_A          272 I-GYS-VNPE---------------DVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV--------------------  314 (347)
T ss_dssp             H-TCB-CCGG---------------GCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE--------------------
T ss_pred             c-Cce-eccC---------------CCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC--------------------
Confidence            5 332 2111               01367899998731122445666665446555421                    


Q ss_pred             HHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHh
Q 009523          498 ERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH  530 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~ed----~~dli~dL~~AL~  530 (532)
                             ..+.|||+++...    .+.+++.|.++++
T Consensus       315 -------~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~  344 (347)
T 1jg8_A          315 -------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR  344 (347)
T ss_dssp             -------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             -------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                   1357999997543    3444455555443

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.95  E-value=1.7e-26  Score=240.60  Aligned_cols=286  Identities=16%  Similarity=0.147  Sum_probs=212.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      ..+...++++++++++|.++.+++++|++|+..++.+++++||+|+++.+.|+++..    .++..|.++..++..|+++
T Consensus        86 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~  161 (399)
T 3tqx_A           86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID----GIRLCKAQRYRYKNNAMGD  161 (399)
T ss_dssp             CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHSCCSEEEEECTTCTTH
T ss_pred             CchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH----HHHHcCCceeEeCCCCHHH
Confidence            457789999999999999999999999999999999999999999999999988553    4556788999999889999


Q ss_pred             HHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-c------cccc--cCCcEEEE
Q 009523          279 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q------KALS--LGADLVLH  344 (532)
Q Consensus       279 Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~------~~l~--~gaDivv~  344 (532)
                      |++++++.     ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.++. .      ....  .+.|+++.
T Consensus       162 l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~  241 (399)
T 3tqx_A          162 LEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTG  241 (399)
T ss_dssp             HHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEE
T ss_pred             HHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEe
Confidence            99988652     599999999999999999999999999999999999999864331 1      1112  26799999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHhC
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl----~~r~~~~~~~a~~la~~L~~~  418 (532)
                      |+||+++|.   .||++++++++++.+.....  .+++..++..++.+...++.+    ....++..++++++.+.|++.
T Consensus       242 s~sK~~~g~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (399)
T 3tqx_A          242 TLGKALGGA---SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL  318 (399)
T ss_dssp             ESSSSSCSS---CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHhcccC---ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            999999943   36999999999988876432  234566776666555555544    444556667788888888775


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE  498 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~  498 (532)
                       ++. +. +                ..|+++++.++. ......+.+.|...++.+..+..      +..          
T Consensus       319 -g~~-~~-~----------------~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~------~~~----------  362 (399)
T 3tqx_A          319 -GFQ-LV-P----------------GNHPIIPVMLGD-AQLATNMADHLLQEGIYVVGFSY------PVV----------  362 (399)
T ss_dssp             -TCC-BC-C----------------CSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECT------TTS----------
T ss_pred             -CCC-cC-C----------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCCEEeeeCC------CCC----------
Confidence             221 11 1                146789999975 24556677766655766654321      100          


Q ss_pred             HHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009523          499 RLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA  531 (532)
Q Consensus       499 ~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~~  531 (532)
                          ...++.+||+++..    +.+.+++.|.+++++
T Consensus       363 ----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          363 ----PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             ----CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence                01246899999843    345556666666553

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.95  E-value=6.8e-27  Score=240.13  Aligned_cols=283  Identities=14%  Similarity=0.174  Sum_probs=209.5

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..+|+++...+|++++|+++|.  ++++++++|++|+..++.+++++||+|+++.++|++...    .++..|.++..++
T Consensus        45 ~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~  120 (354)
T 3ly1_A           45 ANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEH----FAKIAGMKVTKVK  120 (354)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEEC
T ss_pred             CcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHH----HHHHcCCEEEEec
Confidence            4556788899999999999996  467777888899999999999999999999999998653    4456789999988


Q ss_pred             CC-----CHHHHHHhhcC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCCCcc----ccc----c
Q 009523          273 PA-----DMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----S  336 (532)
Q Consensus       273 ~~-----dle~Le~al~~-~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~----~~l----~  336 (532)
                      .+     |+++|++++++ .++++|++++|+||||.+.|++++.++++.  +|+++|+|++|+.....    ...    .
T Consensus       121 ~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  200 (354)
T 3ly1_A          121 MLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQ  200 (354)
T ss_dssp             CCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHT
T ss_pred             CCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhh
Confidence            76     89999999982 279999999999999999999888888877  99999999997643211    111    1


Q ss_pred             c-CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Q 009523          337 L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA  412 (532)
Q Consensus       337 ~-gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la  412 (532)
                      . +.++++.|+||.+|.+| ...|++++++++++.++.....  ...++..++.+...+   +.+..+.++..++++++.
T Consensus       201 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  277 (354)
T 3ly1_A          201 GAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVAG--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILL  277 (354)
T ss_dssp             TCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            2 66799999999997454 4578999999999888776554  345565555544444   335556666778888888


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccccc
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW  492 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~  492 (532)
                      +.|+++ ++. + +|.                .|.++++.++++   ...+.+.|...++.++ |...            
T Consensus       278 ~~l~~~-~~~-~-~~~----------------~~~~~~~~~~~~---~~~~~~~l~~~gi~v~-g~~~------------  322 (354)
T 3ly1_A          278 KALEDL-KLP-Y-LPS----------------EGNFVFHQLVVP---LKDYQTHMADAGVLIG-RAFP------------  322 (354)
T ss_dssp             HHHHHH-TCC-B-CCC----------------CSSEEEEECSSC---HHHHHHHHHHTTEECC-CCCT------------
T ss_pred             HHHHHC-CCe-E-CCC----------------CceEEEEECCCC---HHHHHHHHHHCCEEEe-ecCC------------
Confidence            888875 332 1 121                366889998753   3345555544577776 5331            


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009523          493 DLSQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALH  530 (532)
Q Consensus       493 ~~~~~~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~AL~  530 (532)
                                + .++.||||++.+ +.+.+++.|.++++
T Consensus       323 ----------~-~~~~iRis~~~~~~i~~~~~~l~~~l~  350 (354)
T 3ly1_A          323 ----------P-ADNWCRISLGTPQEMQWVADTMREFRK  350 (354)
T ss_dssp             ----------T-CTTEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             ----------C-CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence                      0 257999999853 45666666766665

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.95  E-value=9.3e-27  Score=242.54  Aligned_cols=295  Identities=16%  Similarity=0.173  Sum_probs=207.0

Q ss_pred             CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          199 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ..+...+++++|++++|.   ++++++++|++|+.+++.++    +++||+|+++.++|+++...+....+..|.++..+
T Consensus        65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~  144 (406)
T 1kmj_A           65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI  144 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence            456788999999999998   46777788889999999999    89999999999999987665555566678888888


Q ss_pred             CCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEEC
Q 009523          272 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  345 (532)
Q Consensus       272 d~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S  345 (532)
                      +.+     |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|+++.|
T Consensus       145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s  223 (406)
T 1kmj_A          145 PLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS  223 (406)
T ss_dssp             CBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred             ecCCCCCcCHHHHHHHhcc-CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEE
Confidence            753     78999999987 799999999999999999999999999999999999999876432 23334589999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh---------------------hc-CCCccHHHHHHHHHhHHHH-----H
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VL-GGALNPNAAYLIIRGMKTL-----H  398 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~---------------------~~-G~~~~~~~a~l~l~~l~tl-----~  398 (532)
                      +||.+|+.|   .|++++++++++.++....                     .+ .++.+......+...++.+     .
T Consensus       224 ~~K~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  300 (406)
T 1kmj_A          224 GHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN  300 (406)
T ss_dssp             GGGTTSCTT---CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             chhccCCCC---cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            999997765   5899999988887654321                     01 1122222222221333332     2


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCC
Q 009523          399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG  478 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~  478 (532)
                      ...++..++++++.+.|++.|++. +..|.               +.|+++.|.+++.  ....+.+.|...++.+..|.
T Consensus       301 ~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~  362 (406)
T 1kmj_A          301 NIAEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKH--HAYDVGSFLDNYGIAVRTGH  362 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEE-EESCT---------------TCCSEEEEEETTC--CHHHHHHHHHHTTEECEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeE-EecCC---------------CcCCEEEEEECCC--CHHHHHHHHhhCCcEEEecc
Confidence            344555577888888888877653 32221               0367888888641  23345555555577776654


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      .++.              .....+|. ++.||||++...+++.++.+.++|+
T Consensus       363 ~~~~--------------~~~~~~g~-~~~iRis~~~~~t~~~i~~~~~~l~  399 (406)
T 1kmj_A          363 HCAM--------------PLMAYYNV-PAMCRASLAMYNTHEEVDRLVTGLQ  399 (406)
T ss_dssp             TTCH--------------HHHHHTTC-SCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccch--------------HHHHhcCC-CCeEEEEeecCCCHHHHHHHHHHHH
Confidence            3210              01112332 5799999998644444444444443

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.95  E-value=2.8e-27  Score=252.01  Aligned_cols=258  Identities=19%  Similarity=0.237  Sum_probs=208.0

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHH------HhcccCCcE
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGIT  267 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~---~sSG~~Ai~~al~all~~Gd~VIv~~-~~y~~t~~~~~------~~l~~~Gv~  267 (532)
                      |+++..+++++.+++++|.+..++   ++||++|+..++.+++++||+|++++ +.|+++...+.      ..++..|++
T Consensus        62 y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~  141 (431)
T 3ht4_A           62 YDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIG  141 (431)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCE
T ss_pred             CChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCE
Confidence            445668999999999999987766   88999999999999999999999998 99998765442      345678999


Q ss_pred             EEEeCC-----CCHHHHHHhhcCCCeeEEEEeC-CCCCC---CcccCHHHHHHHHHh--CCCEEEEECCCCCCC-ccccc
Q 009523          268 ATVIDP-----ADMEGLEAALNNNNVSLFFTES-PTNPF---LRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKAL  335 (532)
Q Consensus       268 v~~vd~-----~dle~Le~al~~~~tklV~les-P~Npt---G~v~dl~~I~~la~~--~gi~lIvDet~a~~~-~~~~l  335 (532)
                      +++++.     .|+++|++++++ ++++|++++ |+||+   |.+.|+++|+++|++  +|+++|+|++|+.+. ..++.
T Consensus       142 ~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~  220 (431)
T 3ht4_A          142 YNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC  220 (431)
T ss_dssp             EEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred             EEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence            999987     389999999987 799999995 55554   555678899999999  999999999998875 36778


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccH--HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRM  411 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~--~~a~l~l~~l~tl~~r~~~~~~~a~~l  411 (532)
                      ..|+|+++.|++|++||+.+..||++++++++++.++.....  .|...++  ..+++++++++++..+++++.+++..+
T Consensus       221 ~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l  300 (431)
T 3ht4_A          221 HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFT  300 (431)
T ss_dssp             GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence            889999999999999997767789999999999988764432  2322222  235667889999999999999999999


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY  471 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~  471 (532)
                      +++|++++.  .+ +|. ++++.          .+-+++|.++ +.+.+.+|++.|+.+.
T Consensus       301 ~~~L~~~g~--~v-~p~-~~~~~----------~~li~~i~l~-~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          301 AAFLEKLGM--NT-SPA-WNAPR----------TDLIQSVQFD-DKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             HHHHHHHTC--CE-ESC-TTSCC----------SSSCCEEECC-CHHHHHHHHHHHHHTS
T ss_pred             HHHHHhCcC--Ee-cCC-CCCCC----------ccEEEEEEeC-CHHHHHHHHHHHHhcC
Confidence            999998764  34 565 44443          3448899986 4577889999887654

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.95  E-value=1.7e-26  Score=239.88  Aligned_cols=297  Identities=17%  Similarity=0.135  Sum_probs=207.7

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~g----a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      .+.|+....+..+++++.+++.+|    .++++++++|++|+.+++.+++++||+|+++.++|++...    .+...|.+
T Consensus        57 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~  132 (391)
T 3dzz_A           57 AFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYS----VIEGNGRR  132 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHH----HHHHTTCE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHH----HHHHcCCE
Confidence            456666656667777777777777    2567778888999999999999999999999999998654    34456888


Q ss_pred             EEEeCC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcc---cCHHHHHHHHHhCCCEEEEECCCCCCCc-----
Q 009523          268 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN-----  331 (532)
Q Consensus       268 v~~vd~--------~dle~Le~al~~~~tklV~lesP~NptG~v---~dl~~I~~la~~~gi~lIvDet~a~~~~-----  331 (532)
                      +..++.        .|+++|++++++.++++|++++|+||||.+   .++++|+++|+++|+++|+|++|+....     
T Consensus       133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  212 (391)
T 3dzz_A          133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI  212 (391)
T ss_dssp             EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred             EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence            888765        589999999984479999999999999999   4688999999999999999999874321     


Q ss_pred             ccccccC---Cc--EEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcC-CCccHHHHHHHHHhHHH----HHHH
Q 009523          332 QKALSLG---AD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LHLR  400 (532)
Q Consensus       332 ~~~l~~g---aD--ivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G-~~~~~~~a~l~l~~l~t----l~~r  400 (532)
                      ......+   .|  +++.|+||.+|.+| ...|+++++ +++++.++......+ ...++..++.+...++.    +..+
T Consensus       213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  291 (391)
T 3dzz_A          213 TPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL  291 (391)
T ss_dssp             CCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred             eehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence            1122222   45  99999999997554 357888886 888888876644332 23444444444444433    4555


Q ss_pred             HHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCC
Q 009523          401 VQQQNSTALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGG  478 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~  478 (532)
                      .++..++++++.+.|++ .|++. +..|.                .+.++++.++........+.+.| +..++.+..|.
T Consensus       292 ~~~~~~~~~~l~~~l~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~  354 (391)
T 3dzz_A          292 KQVLRDNFAYAREFLAKEVPEVK-VLDSN----------------ASYLAWVDISALGMNAEDFCKYLREKTGLIISAGN  354 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSE-ECCCC----------------BSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESG
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcE-EeccC----------------ceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCch
Confidence            66677888889999988 67764 32221                34466788763112344555555 35577777775


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                      .+..                     ..++.+|||++..  +.++.++.|.+++++
T Consensus       355 ~~~~---------------------~~~~~iRis~~~~~~~i~~~l~~l~~~l~~  388 (391)
T 3dzz_A          355 GYRG---------------------NGHEFVRINLACPKELVIDGMQRLKQGVLN  388 (391)
T ss_dssp             GGCT---------------------TGGGEEEEECCSCHHHHHHHHHHHHHHHHT
T ss_pred             hhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            4321                     0257899999952  234455666666654

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=3e-26  Score=242.87  Aligned_cols=284  Identities=15%  Similarity=0.136  Sum_probs=211.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+...+|+++|++++|.+++++++||++|+..++.+++++||.|+++.+.|+++...    ++..|.++..++..|+++|
T Consensus       108 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~----~~~~g~~~~~~~~~d~~~l  183 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDG----CQQGNAEIVRFRHNSVEDL  183 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHH----HHHSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHH----HHHcCCeeEEeCCCCHHHH
Confidence            578899999999999999999999999999999999999999999999999886543    3456888888998999999


Q ss_pred             HHhhcCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---------cccccCCcEEEECCc
Q 009523          280 EAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSAT  347 (532)
Q Consensus       280 e~al~~~---~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---------~~l~~gaDivv~S~s  347 (532)
                      ++++++.   ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+...         ..+..++|+++.|+|
T Consensus       184 e~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~s  263 (427)
T 2w8t_A          184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFS  263 (427)
T ss_dssp             HHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESS
T ss_pred             HHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecch
Confidence            9999753   5899999999999999999999999999999999999998764321         111235799999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                      |++|+.    ||++++++++++.++...  ..++...++..+..+...++.+   ..+.++..++++++.+.|++. ++.
T Consensus       264 K~~g~~----gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  338 (427)
T 2w8t_A          264 KSVGTV----GGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFR  338 (427)
T ss_dssp             STTCSC----CEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred             hhhccC----CCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            999844    599999988887776532  2334556777666655666655   556667778888888888875 332


Q ss_pred             EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhc
Q 009523          423 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY  502 (532)
Q Consensus       423 ~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~  502 (532)
                       +..+.               +.|+++++.+++ ......+.+.|...++.+..|..+..            +       
T Consensus       339 -~~~~~---------------~~~~~~~~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~------------~-------  382 (427)
T 2w8t_A          339 -LGTET---------------CDSAIVAVMLED-QEQAAMMWQALLDGGLYVNMARPPAT------------P-------  382 (427)
T ss_dssp             -ESCSS---------------CCSSEEEEEESS-HHHHHHHHHHHHHTTEECEEECTTTS------------C-------
T ss_pred             -ccCCC---------------CCCCEEEEEECC-HHHHHHHHHHHHHCCeEEeeeCCCCC------------C-------
Confidence             22111               136799999964 34566677777655776665432110            0       


Q ss_pred             CCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          503 GIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       503 gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                       ...+.|||+++....++.++.+.++|
T Consensus       383 -~~~~~lRi~~~~~~t~e~i~~~~~~l  408 (427)
T 2w8t_A          383 -AGTFLLRCSICAEHTPAQIQTVLGMF  408 (427)
T ss_dssp             -TTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             -CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence             12468999999754444444444433

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=2.5e-27  Score=247.25  Aligned_cols=307  Identities=15%  Similarity=0.152  Sum_probs=204.4

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCC-EEEEcCCCCcchHHHHHHhcccC
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all----~~Gd-~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      .|.|+++..+..+++++++++++|.+  +++++++|++|+.+++.+++    ++|| +|++++++|+++...+.. +...
T Consensus        54 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~  132 (400)
T 3vax_A           54 RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGR  132 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhc
Confidence            35566667788899999999999975  67888888899999999988    8999 999999999987766543 3567


Q ss_pred             CcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccC
Q 009523          265 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG  338 (532)
Q Consensus       265 Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~g  338 (532)
                      |+++..++.+     |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+.... 
T Consensus       133 g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-  210 (400)
T 3vax_A          133 GFEVDFLTPGPSGRISVEGVMERLRP-DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-  210 (400)
T ss_dssp             TCEEEEECCCTTCCCCHHHHHTTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-
T ss_pred             CCeEEEEccCCCCCcCHHHHHHhcCC-CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-
Confidence            9999988764     89999999987 799999999999999999999999999999999999999876532 222234 


Q ss_pred             CcEEEECCccccCCCCCcEEEEEE-eCh-HHH---HHHHHHh-------hhcCCCccHHHHHHHHHhHHHH----HHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSIS-GSG-KLV---TQIRNLH-------HVLGGALNPNAAYLIIRGMKTL----HLRVQ  402 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv-~~~-~li---~~l~~~~-------~~~G~~~~~~~a~l~l~~l~tl----~~r~~  402 (532)
                      +|+++.|+||.+|+.+   .|+++ .++ ++.   ..+....       ....++.+....+.+..+++.+    ....+
T Consensus       211 ~d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  287 (400)
T 3vax_A          211 IDMISISGHKIGAPKG---VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQV  287 (400)
T ss_dssp             CSEEEEETGGGTSCSS---CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CcEEEEeHHHhCCCCc---eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHH
Confidence            8999999999777654   45555 544 111   1111111       1123334555444444444433    33445


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      +..++++++.+.|+ .+++. +..|.             ..+.+++++|.+++  .....+.+.|. .++.++.|..++.
T Consensus       288 ~~~~~~~~l~~~L~-~~~~~-~~~~~-------------~~~~~~~~~~~~~~--~~~~~l~~~L~-~gi~v~~g~~~~~  349 (400)
T 3vax_A          288 AAQDLRSRLLAGLA-STSFQ-VNGDQ-------------DHVVPHILNLSFED--VDAEAFLVTLK-DLVAVATGSASTS  349 (400)
T ss_dssp             HHHHHHHHHHHHHT-TTTCE-ECSCT-------------TSBCTTEEEEECTT--CCHHHHHHHHH-HHHHHTTTTEEEE
T ss_pred             HHHHHHHHHHHhhC-CCCEE-EeCCc-------------ccCCCCEEEEEeCC--CCHHHHHHHHh-cCcEEEecccccC
Confidence            55566777777777 66653 22221             01246789998875  23456677777 7888888865442


Q ss_pred             cccCccccccCCCHHHHHhcCCC----CCeEEEEe-cCCC----HHHHHHHHHHHHh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIM----DNLVRFSF-GVED----FEDLKADVLQALH  530 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~----~~~IRlSv-G~ed----~~dli~dL~~AL~  530 (532)
                      ...        .+......+|++    ++.|||++ +...    .+++++.|.++++
T Consensus       350 ~~~--------~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  398 (400)
T 3vax_A          350 ASF--------TPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP  398 (400)
T ss_dssp             EEE--------CCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred             CCC--------CccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence            211        122334455655    48999999 8544    4445555555443

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.95  E-value=5.7e-26  Score=235.27  Aligned_cols=293  Identities=12%  Similarity=0.071  Sum_probs=207.6

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      |+....+..+++++.+++++|.+  + +++++||++|+..++.+++++||+|++++++|++..  +...+...|+++..+
T Consensus        47 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  124 (386)
T 2dr1_A           47 RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVL  124 (386)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEE
Confidence            43333577889999999999976  4 566778889999999999999999999999998731  224455678888888


Q ss_pred             CC-----CCHHHHHHhhcC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEE
Q 009523          272 DP-----ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLH  344 (532)
Q Consensus       272 d~-----~dle~Le~al~~-~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~  344 (532)
                      +.     .|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.
T Consensus       125 ~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  204 (386)
T 2dr1_A          125 EYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFS  204 (386)
T ss_dssp             ECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEE
T ss_pred             ecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEE
Confidence            75     589999999942 2699999999999999999999999999999999999999876532 2333457899999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHH----------------HHh--hhcCCCccHHHHHHHHHhHHH------HHHH
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIR----------------NLH--HVLGGALNPNAAYLIIRGMKT------LHLR  400 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~----------------~~~--~~~G~~~~~~~a~l~l~~l~t------l~~r  400 (532)
                      |+||+++++.+  +|++++++++++.++                ...  .....+.++..++.+...++.      +...
T Consensus       205 s~sK~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~  282 (386)
T 2dr1_A          205 SSQKAFGVPPG--LAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKW  282 (386)
T ss_dssp             ETTSTTCCCSS--CEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             eccccccCCCc--eEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999997642  689999998887762                111  122334555555554445543      2345


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      .++..++++++.+.|+++ ++. +..|.     .        ...+++++|.++.+ .....+.+.|...++.+..|...
T Consensus       283 ~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~  346 (386)
T 2dr1_A          283 LEMYEKRAKMVREGVREI-GLD-ILAEP-----G--------HESPTITAVLTPPG-IKGDEVYEAMRKRGFELAKGYGS  346 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCC-BSSCT-----T--------CBCSSEEEEECCTT-CCHHHHHHHHHHTTEECEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHc-CCe-eCcCc-----c--------ccCCceEEEEcCCC-CCHHHHHHHHHHCCeEEecCccc
Confidence            566678888888888876 432 21120     0        01467899998732 23445666665457777665321


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                                             ..++.|||+++..    +.+++++.|.++++
T Consensus       347 -----------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  377 (386)
T 2dr1_A          347 -----------------------VKEKTFRIGHMGYMKFEDIQEMLDNLREVIN  377 (386)
T ss_dssp             -----------------------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                                   0257899999963    34455555555554

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.95  E-value=4.9e-26  Score=235.36  Aligned_cols=279  Identities=15%  Similarity=0.208  Sum_probs=200.4

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .+|+++...+|++++|+++|.+  +++++++|++++..++.+++++| |+|+++.|+|++....    ++..|.++..++
T Consensus        53 ~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~----~~~~g~~~~~v~  128 (356)
T 1fg7_A           53 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVS----AETIGVECRTVP  128 (356)
T ss_dssp             TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHH----HHHHTCEEEECC
T ss_pred             ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHH----HHHcCCEEEEee
Confidence            4667666789999999999874  45566666799999999999999 9999999999986543    344688888776


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHH---HHHHhCCCEEEEECCCCCCCc-cccc----ccCC
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS---DLCHKKGAIVCIDGTFATPLN-QKAL----SLGA  339 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~---~la~~~gi~lIvDet~a~~~~-~~~l----~~ga  339 (532)
                      .     .|+++|+++++  ++++|++++|+||||.+.|.+++.   ++|+ +|+++|+||+|..... ....    ..+.
T Consensus       129 ~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~  205 (356)
T 1fg7_A          129 TLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPH  205 (356)
T ss_dssp             CCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred             CCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCC
Confidence            4     37899999886  599999999999999999866555   4555 8999999999875431 1111    2356


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-----l~~r~~~~~~~a~~la~~  414 (532)
                      ++++.|+||++|.+| ...|++++++++++.++.....+  ..++..++.+...++.     +....++..++++++.+.
T Consensus       206 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  282 (356)
T 1fg7_A          206 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA  282 (356)
T ss_dssp             EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998655 45789999999998888765444  3556655555544433     444555666788888899


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC-CCcccccccCccccccC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF-GGCESIVDQPAIMSYWD  493 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~-G~~~sl~~~pa~~s~~~  493 (532)
                      |++++.+..+ .|.                .|+++++.++ +   ...+.+.|...++.+.. |..+             
T Consensus       283 L~~~~~~~~~-~~~----------------~~~~~~~~~~-~---~~~l~~~L~~~gI~v~~~g~~~-------------  328 (356)
T 1fg7_A          283 LKEIPCVEQV-FDS----------------ETNYILARFK-A---SSAVFKSLWDQGIILRDQNKQP-------------  328 (356)
T ss_dssp             HHHSTTEEEE-CCC----------------SSSEEEEEET-T---HHHHHHHHHHTTEECEECTTST-------------
T ss_pred             HHhCCCceEE-CCC----------------CCeEEEEECC-C---HHHHHHHHHHCCEEEEECCCCC-------------
Confidence            9887754322 332                3668899986 2   34455555555777665 5321             


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                               |. ++++|||++.   ++.++.+.++|++
T Consensus       329 ---------~~-~~~iRis~~~---~~e~~~~~~~l~~  353 (356)
T 1fg7_A          329 ---------SL-SGCLRITVGT---REESQRVIDALRA  353 (356)
T ss_dssp             ---------TC-TTEEEEECCC---HHHHHHHHHHHHT
T ss_pred             ---------CC-CCeEEEEeCC---HHHHHHHHHHHHh
Confidence                     11 4689999984   3445666666654

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.95  E-value=3.9e-27  Score=242.98  Aligned_cols=289  Identities=14%  Similarity=0.163  Sum_probs=203.1

Q ss_pred             CCCCCCCchhHHHHHHH-HHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          193 FEYGRYGNPTTVVVEEK-MSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~-lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +.++++..+...+++++ +++++|.+..+++++|++|+..++.+++++||+|+++.++|++....    +...|+++..+
T Consensus        45 ~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v  120 (371)
T 2e7j_A           45 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALV  120 (371)
T ss_dssp             --------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEe
Confidence            34556678889999999 99999988445555557999999999999999999999999986643    45678888888


Q ss_pred             C--CC-----CHHHHHHhhc-----CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccC
Q 009523          272 D--PA-----DMEGLEAALN-----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG  338 (532)
Q Consensus       272 d--~~-----dle~Le~al~-----~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~g  338 (532)
                      +  .+     |+++|+++++     + ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......+
T Consensus       121 ~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~  199 (371)
T 2e7j_A          121 PKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG  199 (371)
T ss_dssp             CCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred             ecccCCCCCcCHHHHHHHHHhhcccC-CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence            8  54     7999999997     5 699999999999999999999999999999999999999876543 3444568


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHH-HHHHhh--hc-----CCCccHHHHHHHHHhHHHHH-HHHHHH--HHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH--VL-----GGALNPNAAYLIIRGMKTLH-LRVQQQ--NST  407 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~-l~~~~~--~~-----G~~~~~~~a~l~l~~l~tl~-~r~~~~--~~~  407 (532)
                      +|+++.|+||+++++.  .+|++++++++++. ++....  ..     .++.++...+.+...++.+. ...++.  .++
T Consensus       200 ~di~~~s~sK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  277 (371)
T 2e7j_A          200 ADFIVGSGHKSMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK  277 (371)
T ss_dssp             CSEEEEEHHHHSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             CCEEEecCCcCCCCCC--CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999888764  46899999887776 654332  11     23344444444444555444 234455  678


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      ++++.+.|++. ++. +..|.              .+.+++++|.++    ....+.+.|...++.+.. ..        
T Consensus       278 ~~~l~~~L~~~-~~~-~~~~~--------------~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~--------  328 (371)
T 2e7j_A          278 ARRFAAEMEKL-GIK-QLGDN--------------PHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-EL--------  328 (371)
T ss_dssp             HHHHHHHHHHT-TCE-EESSS--------------SCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HH--------
T ss_pred             HHHHHHHHHHc-CcE-EecCC--------------CccCceEEEECC----CHHHHHHHHHHCCEEEEe-cc--------
Confidence            88888899886 553 22221              012568999885    456677777755544322 00        


Q ss_pred             cccccCCCHHHHHhc---CCCCCeEE-EEecCC-CHHHHHHHHHHHH
Q 009523          488 IMSYWDLSQSERLKY---GIMDNLVR-FSFGVE-DFEDLKADVLQAL  529 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~---gi~~~~IR-lSvG~e-d~~dli~dL~~AL  529 (532)
                                  ...   |..++.|| |+++.. ..++.++.+.++|
T Consensus       329 ------------~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l  363 (371)
T 2e7j_A          329 ------------KSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAF  363 (371)
T ss_dssp             ------------HHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHH
T ss_pred             ------------ccccccCCCCCceEEEEeeccCCCHHHHHHHHHHH
Confidence                        011   34468899 999975 4344344444433

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.95  E-value=1.4e-25  Score=234.41  Aligned_cols=284  Identities=14%  Similarity=0.152  Sum_probs=209.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  278 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~  278 (532)
                      ..+..+++++.++++.|.++++++++|++|+..++.+++++||+|+++.+.|+++...    +...|.++..++..|+++
T Consensus        86 ~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~----~~~~g~~~~~v~~~d~~~  161 (398)
T 3a2b_A           86 TLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDG----SRLSFSKVIKYGHNNMED  161 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHH----HHHSSSEEEEECTTCHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHH----HHHcCCceEEeCCCCHHH
Confidence            4578899999999999998899999999999999999999999999999999986543    445688999999889999


Q ss_pred             HHHhhcCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc----ccccc-c----CCcEEEECC
Q 009523          279 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-L----GADLVLHSA  346 (532)
Q Consensus       279 Le~al~~~---~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~----~~~l~-~----gaDivv~S~  346 (532)
                      |++++++.   ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+..    ..... .    ++|+++.|+
T Consensus       162 l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~  241 (398)
T 3a2b_A          162 LRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF  241 (398)
T ss_dssp             HHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred             HHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecc
Confidence            99999763   589999999999999999999999999999999999999876522    11111 1    369999999


Q ss_pred             ccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          347 TKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      ||++++.|    |++++++++++.++...  .......++.....+...++.+   ....++..++++++.+.|++. ++
T Consensus       242 sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  316 (398)
T 3a2b_A          242 SKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GF  316 (398)
T ss_dssp             SSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             cccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            99999653    89999999988887642  2233344555443333444433   344556667788888888875 33


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHh
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK  501 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~  501 (532)
                      . + ++                +.|.++++.++. ......+.+.|...++.+..|..+..   +               
T Consensus       317 ~-~-~~----------------~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~---~---------------  359 (398)
T 3a2b_A          317 D-L-GA----------------TESPILPIFIRS-NEKTFWVTKMLQDDGVFVNPVVSPAV---P---------------  359 (398)
T ss_dssp             C-B-CS----------------CCSSEEEEECCC-HHHHHHHHHHHHHTTEECEEECTTTS---C---------------
T ss_pred             C-c-CC----------------CCCCEEEEEcCC-HHHHHHHHHHHHHCCcEEEeeCCCCC---C---------------
Confidence            2 1 11                125789999864 23456677766555777766543210   0               


Q ss_pred             cCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          502 YGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       502 ~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                        ..++.+||+++..    +.+.+++.|.++++
T Consensus       360 --~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~  390 (398)
T 3a2b_A          360 --AEESLIRFSLMATHTYDQIDEAIEKMVKVFK  390 (398)
T ss_dssp             --GGGCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --CCCceEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence              0257899999963    34455555555554

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.95  E-value=1.5e-26  Score=239.19  Aligned_cols=303  Identities=14%  Similarity=0.119  Sum_probs=204.2

Q ss_pred             CCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          198 YGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all----~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ...+...++++++++++|.+  +++++++|++|+.+++.++.    ++||+|++++++|+++...+. .+...|++++.+
T Consensus        40 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v  118 (382)
T 4eb5_A           40 KAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYI  118 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEe
Confidence            34567889999999999975  56777888899999999987    899999999999998765553 345578998888


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEEC
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  345 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S  345 (532)
                      +.     .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|++ |+|++++.+.. .+....++|+++.|
T Consensus       119 ~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s  196 (382)
T 4eb5_A          119 PVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTIS  196 (382)
T ss_dssp             CBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEE
T ss_pred             ccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEee
Confidence            75     389999999987 699999999999999999999999999999999 99999874321 22223478999999


Q ss_pred             CccccCCCCCcEEEEEEeChHH-HHHHHH----HhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Q 009523          346 ATKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~l-i~~l~~----~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la~~L~  416 (532)
                      +||++|+.|   .|+++.+++. +..+..    ......++.+....+.+..+++.    +....++..++++++.+.|+
T Consensus       197 ~sK~~g~~g---~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  273 (382)
T 4eb5_A          197 SNDIYGPKG---VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVL  273 (382)
T ss_dssp             TGGGTCCSS---CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHhcCCCc---eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            999987654   3666665542 111100    01111233444433333333332    34455566677888888888


Q ss_pred             hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCH
Q 009523          417 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ  496 (532)
Q Consensus       417 ~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~  496 (532)
                      +.|++. +..|.     .        ...+++++|.+++  .....+.+.|...++.+..|..++...        ..+.
T Consensus       274 ~~~~~~-~~~~~-----~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~--------~~~~  329 (382)
T 4eb5_A          274 KIEESY-LNGHP-----E--------KRLPNNVNVRFSY--IEGESIVLSLDMAGIQASTGSACSSKT--------LQPS  329 (382)
T ss_dssp             TSTTEE-ECSCS-----S--------SBCTTEEEEEETT--SCHHHHHHHHHHHTCBCBCCCGGGTSS--------CCCC
T ss_pred             hCCCeE-EeCCc-----c--------cCCCCEEEEEeCC--cCHHHHHHHHHHCCEEEeccccccCCC--------Cccc
Confidence            876653 32221     0        0136789999874  223455555555577777775533210        0122


Q ss_pred             HHHHhcCCC----CCeEEEEecCCC----HHHHHHHHHHHHh
Q 009523          497 SERLKYGIM----DNLVRFSFGVED----FEDLKADVLQALH  530 (532)
Q Consensus       497 ~~~~~~gi~----~~~IRlSvG~ed----~~dli~dL~~AL~  530 (532)
                      .....+|++    ++.|||+++...    .+++++.|.++++
T Consensus       330 ~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (382)
T 4eb5_A          330 HVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             HHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            233445653    689999999643    4445555555543

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.95  E-value=7.9e-26  Score=234.86  Aligned_cols=280  Identities=14%  Similarity=0.108  Sum_probs=201.8

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhC--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~g--a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ..+.|+.+..+..+++++.+++++|  .  ++++++++|++|+..++.+++++||+|+++.++|++...    .+...|.
T Consensus        61 ~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~  136 (391)
T 4dq6_A           61 EIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNS----VVKNNNR  136 (391)
T ss_dssp             CCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHH----HHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH----HHHHcCC
Confidence            3567887777888889999999888  2  568888888999999999999999999999999998654    3445688


Q ss_pred             EEEEeCCC---------CHHHHHHhhcCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          267 TATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       267 ~v~~vd~~---------dle~Le~al~~~~tklV~lesP~NptG~v~---dl~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                      ++..++.+         |+++|++++++  +++|++++|+||||.+.   ++++|+++|+++|+++|+|++|+....   
T Consensus       137 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  214 (391)
T 4dq6_A          137 ELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH  214 (391)
T ss_dssp             EEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred             eEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC
Confidence            88887654         89999999976  99999999999999995   477889999999999999999865321   


Q ss_pred             --cccccc-----CCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcC-CCccHHHHHHHHHhHHH----HH
Q 009523          332 --QKALSL-----GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LH  398 (532)
Q Consensus       332 --~~~l~~-----gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G-~~~~~~~a~l~l~~l~t----l~  398 (532)
                        ......     +.++++.|+||.+|.+| ...|++++++ ++++.++......+ .+.++..+..+...++.    +.
T Consensus       215 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  293 (391)
T 4dq6_A          215 KHIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLE  293 (391)
T ss_dssp             CCCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred             CccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHH
Confidence              111122     33489999999997555 4578888775 88888877654433 24566655554444443    44


Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecC
Q 009523          399 LRVQQQNSTALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSF  476 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~  476 (532)
                      .+.++..++++.+.+.|++ .|++..+ .|.                .+.++++.++........+.+.|... ++.+..
T Consensus       294 ~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~  356 (391)
T 4dq6_A          294 SFLEYLESNIDFAIKYINENMPKLKVR-KPE----------------GTYLLWVDFSALGLSDEELESILVQKGKVALNQ  356 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSEEC-CCS----------------BSSEEEEECGGGCCCHHHHHHHHHHTTCEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCEec-CCC----------------ccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeC
Confidence            5556666788888888887 5766422 221                24456788863112344566666544 777776


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                      |..+..                     ..++.+|||++.
T Consensus       357 g~~~~~---------------------~~~~~iRis~~~  374 (391)
T 4dq6_A          357 GNSFGI---------------------GGSGYQRINLAC  374 (391)
T ss_dssp             GGGGCT---------------------TCTTEEEEECCS
T ss_pred             chhhCC---------------------CCCCeEEEEEcC
Confidence            644320                     125799999995

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.95  E-value=1.1e-26  Score=242.85  Aligned_cols=290  Identities=16%  Similarity=0.185  Sum_probs=207.7

Q ss_pred             CCCchhHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          197 RYGNPTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +...+..+++++.+++++|.     ++++++++|++|+..++.+++++||+|+++.+.|.+...    .++..|.++..+
T Consensus        78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~  153 (407)
T 3nra_A           78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRK----LVEFFEGEMVPV  153 (407)
T ss_dssp             TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHH----HHHHcCCEEEEe
Confidence            34456778888889988886     567888888899999999999999999999999997553    345567887777


Q ss_pred             CC-----------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc------
Q 009523          272 DP-----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN------  331 (532)
Q Consensus       272 d~-----------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~------  331 (532)
                      +.           .|+++|++++++ ++++|++++|+||||.+.|   +++|+++|++||+++|+|++|+....      
T Consensus       154 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~  232 (407)
T 3nra_A          154 QLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYT  232 (407)
T ss_dssp             EBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCC
T ss_pred             ecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence            64           289999999987 7999999999999999999   88999999999999999999875321      


Q ss_pred             -cccc---ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHH
Q 009523          332 -QKAL---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQ  403 (532)
Q Consensus       332 -~~~l---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~  403 (532)
                       ...+   ..+.++++.|+||.+|.+| ...|++++++++++.++..........++..++.+...++    .+..+.++
T Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  311 (407)
T 3nra_A          233 HLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIAR  311 (407)
T ss_dssp             CGGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHH
T ss_pred             ChhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHH
Confidence             1111   1446799999999998554 3578999999999988877666665556665555444432    35556667


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESI  482 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl  482 (532)
                      ..++++++.+.|+++|++.. ..|                ..|.++++.++........+.+.|. ..++.+..|..+. 
T Consensus       312 ~~~~~~~l~~~L~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-  373 (407)
T 3nra_A          312 HQAIRDELLHVLRGCEGVFA-RTP----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS-  373 (407)
T ss_dssp             HHHHHHHHHHHHHTSTTCBC-CCC----------------SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC-
T ss_pred             HHHHHHHHHHHHhcCCCcee-ccC----------------CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC-
Confidence            77888889999988765531 111                1346777777641123345555552 2467776664432 


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                         +                 ..++.||||++.  ++.++.++.|.++++
T Consensus       374 ---~-----------------~~~~~iRis~~~~~~~i~~~~~~l~~~~~  403 (407)
T 3nra_A          374 ---P-----------------HTADSVRLNFSQDHEAAVAAARRIVTLVE  403 (407)
T ss_dssp             ---T-----------------TCTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ---C-----------------CCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence               1                 135799999996  123344555555554

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.95  E-value=6.2e-26  Score=234.53  Aligned_cols=287  Identities=15%  Similarity=0.102  Sum_probs=204.1

Q ss_pred             CchhHHHHHHHHHhhhCCCc----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          199 GNPTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~----~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      ..+..+++++++++++|.+.    +++++||++|+. ++.+++++||+|+++++.|++..  +...+...|+++..++.+
T Consensus        33 ~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~  109 (384)
T 3zrp_A           33 FVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKRYPVNVKVLRPS  109 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTTSSCEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHHcCCcEEEecCC
Confidence            35678889999999999754    677888889999 99999999999999999997632  334556789999988754


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCcc
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  348 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~sK  348 (532)
                           |+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|+++.|+||
T Consensus       110 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K  189 (384)
T 3zrp_A          110 PGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQK  189 (384)
T ss_dssp             TTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTS
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcc
Confidence                 899999999875699999999999999999999999999999999999999875432 33345679999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHH-------------HHHhh---h----c---CCCccHHHHHHHHHhHHH-----HHHH
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQI-------------RNLHH---V----L---GGALNPNAAYLIIRGMKT-----LHLR  400 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l-------------~~~~~---~----~---G~~~~~~~a~l~l~~l~t-----l~~r  400 (532)
                      +++++.+  .|++++++++++.+             ..+..   .    .   .++.+......+...++.     +...
T Consensus       190 ~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~  267 (384)
T 3zrp_A          190 ALGSAAG--LGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENR  267 (384)
T ss_dssp             TTCCCSS--EEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cccCCCc--eEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            8875432  68899999888776             22211   1    0   023444443333333332     3345


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      .++..++++++.+.|+++ ++. +..|.    +.        ...+++++|.+++  .....+.+.|...++.+..|...
T Consensus       268 ~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~  331 (384)
T 3zrp_A          268 IKRHTMVASAIRAGLEAL-GLE-IVARR----PE--------SYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGVHP  331 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCC-BSCSS----GG--------GBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHC-CCe-EccCc----cc--------ccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCCCC
Confidence            556667788888888876 432 21111    00        1246788999875  33456666666557666655310


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                      .                        .+.|||+++..    +.+++++.|.++++
T Consensus       332 ~------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~  361 (384)
T 3zrp_A          332 A------------------------FKYFRIGHMGWVTPNDAIIAISVIERTLR  361 (384)
T ss_dssp             T------------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             C------------------------cCEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            0                        17899999853    44555666666554

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.95  E-value=7.8e-26  Score=234.53  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=209.6

Q ss_pred             CCCc--hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          197 RYGN--PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       197 R~~~--p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +|+.  +...+++++|++++|.+  +++++++|++|+..++.++ +++||+|+++.++|++....+....+..|.++..+
T Consensus        53 ~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v  132 (390)
T 1elu_A           53 ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFF  132 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEE
Confidence            4444  77889999999999975  6888889999999999999 89999999999999987655444455668888888


Q ss_pred             CCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHH----hCCCEEEEECCCCCCCc-ccccccCC
Q 009523          272 DPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLN-QKALSLGA  339 (532)
Q Consensus       272 d~~-------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~----~~gi~lIvDet~a~~~~-~~~l~~ga  339 (532)
                      +.+       |+++|++++++ ++++|++++|+||||.+.|+++|.++|+    ++|+++|+|++++.+.. ......++
T Consensus       133 ~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~  211 (390)
T 1elu_A          133 PVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEV  211 (390)
T ss_dssp             CCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCC
T ss_pred             cCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCC
Confidence            752       68999999987 7999999999999999999999999999    99999999999875422 22224578


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh----------------------hhcCCCccHHHHHHHHHhHH--
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLIIRGMK--  395 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----------------------~~~G~~~~~~~a~l~l~~l~--  395 (532)
                      |+++.|+||++.++.+  .|++++++++++.++...                      ....++.++.....+..+++  
T Consensus       212 d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l  289 (390)
T 1elu_A          212 DYYAFTGHKWFAGPAG--VGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH  289 (390)
T ss_dssp             SEEEEESSSTTCCCTT--CEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred             CEEEccccccccCCCc--eEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHH
Confidence            9999999995544432  588888888776654311                      11122344443332222333  


Q ss_pred             -H---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009523          396 -T---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY  471 (532)
Q Consensus       396 -t---l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~  471 (532)
                       .   +....++..++++++.+.|++.+++. +..|.              .+.|+++.|+++.+ .....+.+.|...+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~g  353 (390)
T 1elu_A          290 QRQGTAEERYQAICQRSEFLWRGLNQLPHVH-CLATS--------------APQAGLVSFTVDSP-LGHRAIVQKLEEQR  353 (390)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEE-ESCSS--------------CCSSSEEEEEECSS-SCHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHhcCCcE-EecCc--------------cccccEEEEEcCCC-CCHHHHHHHHHHCC
Confidence             2   44456677788889999998877653 33331              12467888988532 22345555555446


Q ss_pred             eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       472 i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +.+..|.                          .++.||||++....++.++.+.++|++
T Consensus       354 i~v~~~~--------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          354 IYLRTIA--------------------------DPDCIRACCHYITDEEEINHLLARLAD  387 (390)
T ss_dssp             EECEEET--------------------------TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             EEEEecC--------------------------CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence            6554431                          147899999877777777888877765

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.95  E-value=5e-26  Score=234.89  Aligned_cols=282  Identities=13%  Similarity=0.145  Sum_probs=201.7

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+++...+|++++|+++|.  ++++++++|++|+..++.+++++||+|+++.++|.+...    .++..|.++..++
T Consensus        59 ~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~v~  134 (360)
T 3hdo_A           59 LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGT----LAEVQGARVRTFG  134 (360)
T ss_dssp             GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHH----HHHHHTCEEEEEC
T ss_pred             hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHH----HHHHCCCEEEEee
Confidence            4566777778999999999995  578888999999999999999999999999999998653    3455688888887


Q ss_pred             CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc----cccCCcEEEECCcc
Q 009523          273 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSLGADLVLHSATK  348 (532)
Q Consensus       273 ~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~----l~~gaDivv~S~sK  348 (532)
                      .++...+++.++..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.......    ...+.++++.|+||
T Consensus       135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK  214 (360)
T 3hdo_A          135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK  214 (360)
T ss_dssp             BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred             CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence            65322222222222467999999999999999999999999999999999999874211111    12456799999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKVKRVH  425 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~L~~~p~v~~V~  425 (532)
                      .+|.+| ...|++++++++++.++.....+  ..++..++.+...++   .+..+.++..++++++.+.|+++ ++. + 
T Consensus       215 ~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-  288 (360)
T 3hdo_A          215 SYSLAG-MRIGLAIARPEVIAALDKIRDHY--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYD-V-  288 (360)
T ss_dssp             TTSCTT-SCCEEEECCHHHHHHHHHHSCSC--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-
T ss_pred             hhcCCc-cceeeEeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-
Confidence            998655 45789999999999888765443  356665555554444   34556666778888889999887 443 2 


Q ss_pred             CCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCC
Q 009523          426 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM  505 (532)
Q Consensus       426 ~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~  505 (532)
                      +|.                .|+++++.+++.  ....+.+.|...++.++.|+.      +.                 .
T Consensus       289 ~~~----------------~~~~~~~~~~~~--~~~~l~~~l~~~gi~v~~~~~------~~-----------------~  327 (360)
T 3hdo_A          289 IPS----------------QGNYLFATPPDR--DGKRVYDGLYARKVLVRHFSD------PL-----------------L  327 (360)
T ss_dssp             CCC----------------SSSEEEEECTTC--CHHHHHHHHHHTTEECBCCCS------TT-----------------T
T ss_pred             cCC----------------CccEEEEECCCC--CHHHHHHHHHHCCEEEEECCC------CC-----------------C
Confidence            221                366888888742  234555556555777765532      10                 2


Q ss_pred             CCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          506 DNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       506 ~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ++.+|||++.   ++.++.|.++|+
T Consensus       328 ~~~iRis~~~---~~e~~~l~~al~  349 (360)
T 3hdo_A          328 AHGMRISIGT---REEMEQTLAALK  349 (360)
T ss_dssp             TTSEEEECCC---HHHHHHHHHHHH
T ss_pred             CCEEEEEcCC---HHHHHHHHHHHH
Confidence            4789999993   333455555554

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.94  E-value=3.6e-26  Score=236.35  Aligned_cols=303  Identities=16%  Similarity=0.095  Sum_probs=205.2

Q ss_pred             CchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          199 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all----~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..+...++++++++++|.+  +++++++|++|+..++.++.    ++||+|+++.++|++....+. .+...|.++..++
T Consensus        42 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~  120 (384)
T 1eg5_A           42 ANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVP  120 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEc
Confidence            3456788999999999974  67888888999999999987    799999999999998765442 3455688888887


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC--CEEEEECCCCCCC-cccccccCCcEEEE
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPL-NQKALSLGADLVLH  344 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~g--i~lIvDet~a~~~-~~~~l~~gaDivv~  344 (532)
                      .     .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|  +++|+|++++.+. ..+....++|+++.
T Consensus       121 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~  199 (384)
T 1eg5_A          121 VDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASF  199 (384)
T ss_dssp             BCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEE
T ss_pred             cCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEe
Confidence            5     379999999987 7999999999999999999999999999999  9999999976321 12222347899999


Q ss_pred             CCccccCCCCCcEEEEEEeChHH--HHHHHHH---hhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q 009523          345 SATKFIGGHNDVLAGSISGSGKL--VTQIRNL---HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~l--i~~l~~~---~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la~~L  415 (532)
                      |+||++|++|   .|++++++++  ...+...   .....++.++...+.+...++.    +....++..++++++.+.|
T Consensus       200 s~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  276 (384)
T 1eg5_A          200 SAHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL  276 (384)
T ss_dssp             EGGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            9999988766   4888888765  2211111   0112234555554444444443    3344556667788888888


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++ +++. +..|.-             .+.+.+++|.+++.  ....+.+.|...++.+..|..++...  .      .+
T Consensus       277 ~~-~g~~-~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~--~------~~  331 (384)
T 1eg5_A          277 MN-LGAH-IITPLE-------------ISLPNTLSVSFPNI--RGSTLQNLLSGYGIYVSTSSACTSKD--E------RL  331 (384)
T ss_dssp             HT-TTCE-ECSCTT-------------SBCTTEEEEECTTC--CHHHHHHHHHHTTEECBC-------------------
T ss_pred             CC-CCeE-EeCCcc-------------cCCCCEEEEEeCCC--CHHHHHHHHhhCCeEEeccccccCCC--C------cc
Confidence            87 5553 322210             11356888888642  23456666666688888775432110  0      01


Q ss_pred             HHHHHhcCCC----CCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          496 QSERLKYGIM----DNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       496 ~~~~~~~gi~----~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      ......+|++    ++.|||+++.    ++.+.+++.|.+++++
T Consensus       332 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          332 RHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             -CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            1123344543    4799999995    3445566666666553

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=1.8e-25  Score=234.86  Aligned_cols=281  Identities=13%  Similarity=0.113  Sum_probs=205.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHH
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  280 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le  280 (532)
                      +..+++++++++++|.+..+++++|++|+..++.+++++||.|+++++.|+++...    +...|.++..++..|+++|+
T Consensus       104 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~le  179 (409)
T 3kki_A          104 YDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEG----ARYANAQAHPFMHNNCDHLR  179 (409)
T ss_dssp             TTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHH----HHHTTCEEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHH----HHHcCCeEEEecCCCHHHHH
Confidence            55678999999999999899999999999999999999999999999999886543    34458888888888999999


Q ss_pred             HhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-------cc--cccCCcEEEECCccccC
Q 009523          281 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KA--LSLGADLVLHSATKFIG  351 (532)
Q Consensus       281 ~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-------~~--l~~gaDivv~S~sK~lg  351 (532)
                      ++++++++++|++++|+||||.+.|+++|.++|++||+++|+|++++.+...       ..  ...++|+++.|++|.++
T Consensus       180 ~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~  259 (409)
T 3kki_A          180 MLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFA  259 (409)
T ss_dssp             HHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred             HHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhC
Confidence            9997645899999999999999999999999999999999999998653210       11  12257899999999999


Q ss_pred             CCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCceEEeC
Q 009523          352 GHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVKRVHY  426 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~v~~V~~  426 (532)
                      ++    +|++++++++++.++...  ..++...++..+..+...++.+   ....++..++++++.+.|++.. +.   .
T Consensus       260 ~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~---~  331 (409)
T 3kki_A          260 YR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-LT---I  331 (409)
T ss_dssp             SS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-CC---C
T ss_pred             CC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-Cc---c
Confidence            76    589999988887776532  2344456666655555555543   3444556677888888888752 11   1


Q ss_pred             CCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCC
Q 009523          427 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD  506 (532)
Q Consensus       427 Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~  506 (532)
                      +                +.+.++++.++. ......+.+.|...++.+..+..      |..              ....
T Consensus       332 ~----------------~~~~~~~~~~~~-~~~~~~~~~~L~~~Gv~v~~~~~------~~~--------------~~~~  374 (409)
T 3kki_A          332 R----------------SESQIIGLETGD-ERNTEKVRDYLESNGVFGSVFCR------PAT--------------SKNK  374 (409)
T ss_dssp             C----------------CSSSEEEEEEES-HHHHHHHHHHHHHTTEECEEECT------TSS--------------CTTC
T ss_pred             C----------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEeeeCC------CCc--------------CCCC
Confidence            1                146789999874 23455666666555665543211      110              1135


Q ss_pred             CeEEEEecCCCH----HHHHHHHHHHHh
Q 009523          507 NLVRFSFGVEDF----EDLKADVLQALH  530 (532)
Q Consensus       507 ~~IRlSvG~ed~----~dli~dL~~AL~  530 (532)
                      +.|||+++...+    +++++.|.++++
T Consensus       375 ~~iRi~~~~~~t~e~i~~~~~~l~~~l~  402 (409)
T 3kki_A          375 NIIRLSLNSDVNDEQIAKIIEVCSDAVN  402 (409)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence            799999986444    444455555543

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.94  E-value=2.1e-26  Score=238.85  Aligned_cols=303  Identities=14%  Similarity=0.130  Sum_probs=213.2

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      +.++..+++|+++++++|.+++++++||++|+..++.++ +++||+|+++.++|+++...    +...|.++.+++.+  
T Consensus        33 ~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~  108 (373)
T 3frk_A           33 ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALA----VSYTGAKPIFVEPDIR  108 (373)
T ss_dssp             SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHH----HHHHSCEEEEECEETT
T ss_pred             cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecccc
Confidence            356889999999999999999999999999999999999 99999999999999986643    34558888888754  


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEEEECCc-
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT-  347 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDivv~S~s-  347 (532)
                          |+++|++++++ ++++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+...+....|  .|+++.|++ 
T Consensus       109 ~~~~d~~~l~~~l~~-~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~  184 (373)
T 3frk_A          109 TYNIDPSLIESAITE-KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYP  184 (373)
T ss_dssp             TTEECGGGTGGGCCT-TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred             ccCcCHHHHHHhcCC-CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcC
Confidence                89999999987 799988   6889999999999999999999999999998865444444445  799999966 


Q ss_pred             -cccCCCCCcEEEEEEeCh-HHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009523          348 -KFIGGHNDVLAGSISGSG-KLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       348 -K~lgg~gd~~gG~lv~~~-~li~~l~~~~~~------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~  413 (532)
                       |++++++  .+|++++++ ++++.++.....            +...+++..+.+.+..++.+....++..++++++.+
T Consensus       185 ~K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~  262 (373)
T 3frk_A          185 AKNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIA  262 (373)
T ss_dssp             TSSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CCccCccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             9998855  378888764 577776654321            112346666666666666666666777777888888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccccc-
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW-  492 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~-  492 (532)
                      .|++.+ +   ..|..+....         ....++.+... +   ...+.+.|...++.++.+....+.+.|...... 
T Consensus       263 ~l~~~~-~---~~~~~~~~~~---------~~~~~~~~~~~-~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~  325 (373)
T 3frk_A          263 GINNPN-V---IIPVEADYAK---------HVWYTFVIRSE-K---RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGF  325 (373)
T ss_dssp             HCCCTT-E---ECCCCCTTEE---------CCCSSEEEEES-S---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCC
T ss_pred             HhccCc-e---EeccCCCCCc---------eeeEEEEEEeC-C---HHHHHHHHHHCCCCcccCcCCccccChHHHhcCC
Confidence            777665 3   2232211100         01122344443 2   344555555557777755422333333221110 


Q ss_pred             ---CCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          493 ---DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       493 ---~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                         .++..+.    +..+.|||+++...+++.++.+.++|++
T Consensus       326 ~~~~~~~~~~----~~~~~lrl~~~~~~t~~di~~~~~~l~~  363 (373)
T 3frk_A          326 KTGNFPIAEK----IANEILSIPIWYGMKNEEIEYVIDKINA  363 (373)
T ss_dssp             CTTSSHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence               1111111    1246899999999999889999888875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.94  E-value=3.4e-25  Score=227.87  Aligned_cols=283  Identities=16%  Similarity=0.164  Sum_probs=205.9

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+|+++...+++++++++++.  ++++++++|++|+.+++..+    |+|+++.++|++...    .++..|.++..++.
T Consensus        56 ~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~----~~~~~g~~~~~~~~  127 (361)
T 3ftb_A           56 GVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEI----NAKKHGVSVVFSYL  127 (361)
T ss_dssp             GSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHH----HHHHTTCEEEEEEC
T ss_pred             cCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHH----HHHHcCCeEEEeec
Confidence            455677789999999999985  45677788889999999877    999999999998654    34456888888764


Q ss_pred             -----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc---cccc----ccC
Q 009523          274 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---QKAL----SLG  338 (532)
Q Consensus       274 -----~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~---~~~l----~~g  338 (532)
                           .++++|++++++  +++|++++|+||||.+.|   +++|+++|+++|+++|+|++++....   ....    ..+
T Consensus       128 ~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  205 (361)
T 3ftb_A          128 DENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYS  205 (361)
T ss_dssp             CTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCS
T ss_pred             CcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCC
Confidence                 367899999976  899999999999999997   55677788899999999999764322   1111    224


Q ss_pred             CcEEEECCccccCCCCCcEEEEEE-eChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv-~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~  414 (532)
                      .++++.|+||.++.+| ...|+++ +++++++.++.....+  ..++..++.+...+   +.+..+.++..++++++.+.
T Consensus       206 ~~i~~~s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  282 (361)
T 3ftb_A          206 CLFIIRAMTKFFAMPG-IRFGYGITNNKEIAAKIKAKQNPW--NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEE  282 (361)
T ss_dssp             SEEEEEESSSTTSCGG-GCCEEEEESCHHHHHHHHTTSCTT--CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeChhhcCCCC-cceeEEEeCCHHHHHHHHhhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            5588999999998555 3467777 8889988887655433  45666555555444   34555666777888899999


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      |+++|++..+..|                 .|+++++.+++  .....+.+.|...++.++.|..+.             
T Consensus       283 l~~~~~~~~~~~~-----------------~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~-------------  330 (361)
T 3ftb_A          283 LNKIGFIKRVFSP-----------------HANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFI-------------  330 (361)
T ss_dssp             HHHSSSEEEEECC-----------------SSSEEEEEESS--SCHHHHHHHHHTTTEECEECTTST-------------
T ss_pred             HHhCCCCceecCC-----------------CCeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCC-------------
Confidence            9988876523322                 36688999975  234556666655588877765431             


Q ss_pred             CHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHhh
Q 009523          495 SQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQALHA  531 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG~ed-~~dli~dL~~AL~~  531 (532)
                              +..++++|||++.++ .+++++.|++.++.
T Consensus       331 --------~~~~~~iRis~~~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          331 --------GLDDSFVRFAIKDEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             --------TCCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred             --------CCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence                    123689999999643 36677777766554

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.94  E-value=1.5e-25  Score=231.57  Aligned_cols=282  Identities=16%  Similarity=0.153  Sum_probs=201.6

Q ss_pred             CCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          197 RYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      +|+++...++++++++++|.+  +.+++++|++++.+++.++  +||+|+++.|+|++...    .++..|.++..++.+
T Consensus        55 ~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~~~  128 (364)
T 1lc5_A           55 RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGR----ALAQSGCEIRRWSLR  128 (364)
T ss_dssp             SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHH----HHHHTTCEEEEEECC
T ss_pred             cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHH----HHHHcCCeEEEEeCC
Confidence            445566789999999999863  5777778889999999988  78999999999998653    344568888877654


Q ss_pred             C------HHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----ccc-cccCC
Q 009523          275 D------MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKA-LSLGA  339 (532)
Q Consensus       275 d------le~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~-l~~ga  339 (532)
                      +      ++++.+.+++ ++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|..+..     ... ...+.
T Consensus       129 ~~~~~~~l~~~~~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  207 (364)
T 1lc5_A          129 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH  207 (364)
T ss_dssp             GGGTTCCCTTHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred             cccccchhHHHHHhccC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence            2      3556666655 6899999999999999999   88999999999999999999864321     111 12467


Q ss_pred             cEEEECCccccCCCCCcEEEEEE-eChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv-~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L  415 (532)
                      |+++.|+||++|.+| ...|+++ +++++++.++.....  ...++..++.+...++.   +....++..++++++.+.|
T Consensus       208 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L  284 (364)
T 1lc5_A          208 IWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMP--WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL  284 (364)
T ss_dssp             EEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCT--TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhcCCc-cceEEEEECCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998655 4568898 999999888776543  34566666666655543   4445555667788888999


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      +++|++. + +|.                .|+++++.++.+   ...+.+.|...++.+..|..+.              
T Consensus       285 ~~~~~~~-~-~~~----------------~g~~~~~~~~~~---~~~l~~~l~~~gi~v~~g~~~~--------------  329 (364)
T 1lc5_A          285 CQLPLLT-V-YPG----------------RANYLLLRCERE---DIDLQRRLLTQRILIRSCANYP--------------  329 (364)
T ss_dssp             HTSTTEE-E-CCC----------------SSSEEEEEESCT---TCCHHHHHHTTTEECEECTTST--------------
T ss_pred             hcCCCCE-E-CCC----------------CCeEEEEECCCc---HHHHHHHHHHCCcEEeeCcccC--------------
Confidence            8877654 2 221                356888988742   2244555545577777664421              


Q ss_pred             HHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~AL~  530 (532)
                             +..++++|||++.+ +.+.+++.|++.++
T Consensus       330 -------~~~~~~iRis~~~~~~~~~l~~~l~~~~~  358 (364)
T 1lc5_A          330 -------GLDSRYYRVAIRSAAQNERLLAALRNVLT  358 (364)
T ss_dssp             -------TCCTTEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred             -------CCCCCEEEEEeCCHHHHHHHHHHHHHHhh
Confidence                   11357999999853 33556666666554

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.94  E-value=1.1e-25  Score=233.08  Aligned_cols=264  Identities=16%  Similarity=0.220  Sum_probs=194.3

Q ss_pred             hHHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~g------a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+++++++++++      .  ++++++++|++|+..++.+++++||+|++++++|++....    ++..|.++..++ 
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~-  141 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD-  141 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-
Confidence            46778888888874      2  5688888899999999999999999999999999986543    455788888888 


Q ss_pred             CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc----ccccc----cCCcEEEEC
Q 009523          274 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHS  345 (532)
Q Consensus       274 ~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~----~~~l~----~gaDivv~S  345 (532)
                      .|+++|++++++ ++++|++++|+||||.+.|++ |.++|+++|+++|+|+++..+..    .....    .+.|+++.|
T Consensus       142 ~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  219 (370)
T 2z61_A          142 FTVESLEEALSD-KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING  219 (370)
T ss_dssp             SSHHHHHHHCCS-SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred             CCHHHHHHhccc-CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence            789999999987 799999999999999999999 99999999999999999875421    11222    367999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-----l~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +||++|.+| ...|++++++++++.++........+.++..++.+...++.     +....++..++.+.+.+.|+++ +
T Consensus       220 ~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  297 (370)
T 2z61_A          220 FSKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-G  297 (370)
T ss_dssp             STTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             ChhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            999998555 45799999999999888766555555667666655555532     3334455567778888888875 3


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccccccCCCHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      +. +..|                ..|.+++++++.   ....+.+.|. ..++.+..|..+..                 
T Consensus       298 ~~-~~~~----------------~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~-----------------  340 (370)
T 2z61_A          298 WE-VNNP----------------IGAYYVFPNIGE---DGREFAYKLLKEKFVALTPGIGFGS-----------------  340 (370)
T ss_dssp             CB-CCCC----------------CBTTEECCBCSS---CHHHHHHHHHHHHCEECEEGGGGCG-----------------
T ss_pred             Ce-ecCC----------------CcceEEEEecCC---CHHHHHHHHHHhCCEEEeCchhhCC-----------------
Confidence            32 1111                134567777764   2344555553 34677666543210                 


Q ss_pred             HhcCCCCCeEEEEecC
Q 009523          500 LKYGIMDNLVRFSFGV  515 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~  515 (532)
                          -.++.+|||++.
T Consensus       341 ----~~~~~~Ri~~~~  352 (370)
T 2z61_A          341 ----KGKNYIRISYAN  352 (370)
T ss_dssp             ----GGSSBEEEECCS
T ss_pred             ----CCCCEEEEEEeC
Confidence                025789999994

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.94  E-value=1.1e-25  Score=234.31  Aligned_cols=283  Identities=15%  Similarity=0.174  Sum_probs=195.8

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...++++++++++    |.    ++++++++|++|+..++.+++++||+|++++++|++...    .++..|.++..++.
T Consensus        68 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~v~~  143 (388)
T 1j32_A           68 GEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPE----MVKLAEGTPVILPT  143 (388)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHHHTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCEEEEecC
Confidence            3567777777776    32    456777777899999999999999999999999998553    34456888888764


Q ss_pred             C-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-------ccccc
Q 009523          274 A-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKALS  336 (532)
Q Consensus       274 ~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-------~~~l~  336 (532)
                      +       |+++|++++++ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+....       ...+.
T Consensus       144 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  222 (388)
T 1j32_A          144 TVETQFKVSPEQIRQAITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAAS  222 (388)
T ss_dssp             CGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred             CcccCCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcc
Confidence            2       78999999987 7999999999999999976   88999999999999999999865321       11111


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTAL  409 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~  409 (532)
                         .+.|+++.|+||+++++| ...|++++++++++.++..........++..++.+...++    .+....++..++++
T Consensus       223 ~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  301 (388)
T 1j32_A          223 PEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRR  301 (388)
T ss_dssp             HHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence               457899999999997665 4579999999998888776554444556665555444443    24445556667888


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccccccCcc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa~  488 (532)
                      .+.+.|++.|++. +..|.                .|.++++.++........+.+.|.. .++.+..|..+.       
T Consensus       302 ~l~~~L~~~~g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-------  357 (388)
T 1j32_A          302 YMLDALNAMPGLE-CPKPD----------------GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-------  357 (388)
T ss_dssp             HHHHHHHTCTTCB-CCCCC----------------BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-------
T ss_pred             HHHHHHhhCCCCc-ccCCC----------------eeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-------
Confidence            8888998876553 21111                2345666664200123445555432 466666553211       


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                                      .++.+|||++.  ++.++.++.|.++++
T Consensus       358 ----------------~~~~iRis~~~~~~~i~~~~~~l~~~l~  385 (388)
T 1j32_A          358 ----------------ADDCIRLSYATDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             ----------------CTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCcEEEEecCCHHHHHHHHHHHHHHHH
Confidence                            14689999984  223344455555554

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.94  E-value=5.3e-25  Score=229.62  Aligned_cols=271  Identities=14%  Similarity=0.133  Sum_probs=189.7

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+|++++++++    |.    ++++++++|++|+.+++.+++++||+|+++.|+|.+...    .++..|.++..++.
T Consensus        69 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~  144 (385)
T 1b5p_A           69 GIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE----MVRFAGGVVVEVET  144 (385)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCEEEEeec
Confidence            3567788888776    32    456777777899999999999999999999999987553    34556888877764


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccccc--
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL--  337 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~~--  337 (532)
                             .|+++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+....    .....+  
T Consensus       145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  223 (385)
T 1b5p_A          145 LPEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP  223 (385)
T ss_dssp             CGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT
T ss_pred             CcccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC
Confidence                   378999999987 6999999999999999987   78899999999999999999875422    111222  


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-------HHHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-------TLHLRVQQQNSTALR  410 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-------tl~~r~~~~~~~a~~  410 (532)
                      +.++++.|+||.+|.+| ...|++++++++++.++..........+....+.+...++       .+....++..++++.
T Consensus       224 ~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  302 (385)
T 1b5p_A          224 EHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDL  302 (385)
T ss_dssp             TTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence            56899999999998665 4579999999999888776554433455555544433442       233444555567777


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|+++ ++. +..|.                .|.++++.++........+.+.|...++.+..|..+          
T Consensus       303 l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f----------  354 (385)
T 1b5p_A          303 LLEGLTAL-GLK-AVRPS----------------GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDF----------  354 (385)
T ss_dssp             HHHHHHHH-TCC-BCCCS----------------BTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGG----------
T ss_pred             HHHHHHHC-CCe-ecCCC----------------eeEEEEEecCCCCCCHHHHHHHHHHCCeEEeccccc----------
Confidence            88888765 332 21111                244677777521012345555555557777766432          


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVEDFED  520 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed~~d  520 (532)
                                  +. ++++|||++. +.++
T Consensus       355 ------------~~-~~~iRis~~~-~~~~  370 (385)
T 1b5p_A          355 ------------AA-FGHVRLSYAT-SEEN  370 (385)
T ss_dssp             ------------TC-TTEEEEECCS-CHHH
T ss_pred             ------------CC-CCeEEEEecC-CHHH
Confidence                        11 4689999993 4444

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.94  E-value=3e-25  Score=230.17  Aligned_cols=272  Identities=16%  Similarity=0.127  Sum_probs=195.9

Q ss_pred             CCCc-hhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          197 RYGN-PTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       197 R~~~-p~~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      +|+. +...+|++++++++    |.    + +++++++|++|+.+++.+++++||+|+++.|+|++....    +...|.
T Consensus        58 ~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~  133 (376)
T 2dou_A           58 GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGA----ARVASL  133 (376)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHH----HHHcCC
Confidence            4555 46788999999987    75    3 577777778999999999999999999999999986543    445688


Q ss_pred             EEEEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccc
Q 009523          267 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA  334 (532)
Q Consensus       267 ~v~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~  334 (532)
                      ++..++.     .|+++|++++++ ++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|.....    ...
T Consensus       134 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~  212 (376)
T 2dou_A          134 RTFLIPLREDGLADLKAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSP  212 (376)
T ss_dssp             EEEEECBCTTSSBCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCG
T ss_pred             EEEEeeCCCCCCCCHHHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCh
Confidence            8887764     378889888876 6999999999999999987   57888999999999999999765321    112


Q ss_pred             cc----cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHH
Q 009523          335 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNS  406 (532)
Q Consensus       335 l~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~  406 (532)
                      ..    .+.++++.|+||.+|.+| ...|++++++++++.++......+...++..++.+...++.    +....++..+
T Consensus       213 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  291 (376)
T 2dou_A          213 LALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRE  291 (376)
T ss_dssp             GGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            22    256799999999998555 45789999999999888766655545566665555555543    3344455567


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      +++.+.+.|+++  + .+..|.                .|.+++++++.+ .....+.+.|...++.+..|..+.    +
T Consensus       292 ~~~~l~~~L~~~--~-~~~~~~----------------~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~----~  347 (376)
T 2dou_A          292 RALGMAEALKGV--L-SLLPPR----------------ATMYLWGRLPEG-VDDLEFGLRLVERGVALAPGRGFG----P  347 (376)
T ss_dssp             HHHHHHHHHTTT--S-EECCCC----------------BSSEEEEECCTT-CCHHHHHHHHHHTTEECEEGGGGC----G
T ss_pred             HHHHHHHHHHHh--c-CccCCC----------------eeEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhC----C
Confidence            778888888775  3 232221                355788998742 123455555544477776664321    0


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                                       ..++.+|||++.
T Consensus       348 -----------------~~~~~~Ris~~~  359 (376)
T 2dou_A          348 -----------------GGKGFVRIALVR  359 (376)
T ss_dssp             -----------------GGTTEEEEECCS
T ss_pred             -----------------CCCCeEEEEecC
Confidence                             025789999987

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.94  E-value=3.2e-25  Score=231.58  Aligned_cols=285  Identities=12%  Similarity=0.038  Sum_probs=198.2

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----g----a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..++++++++++    |    .++++++++|++|+.+++.+++++||+|+++.|+|++....    +...|.++..++. 
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  143 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA----IKNQERKIIECELL  143 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHTTTCEEEECCCE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHH----HHHcCCEEEecccc
Confidence            667888888764    5    24678888888999999999999999999999999986543    3456788777754 


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----ccccc--
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS--  336 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~--  336 (532)
                             .|+++|++++++.++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|.....     .....  
T Consensus       144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  223 (399)
T 1c7n_A          144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID  223 (399)
T ss_dssp             EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred             cCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence                   47999999998337999999999999999999   88999999999999999999875321     11111  


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCC-CccHHHHHHHHHhHH----HHHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHLRVQQQNST  407 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~-~~~~~~a~l~l~~l~----tl~~r~~~~~~~  407 (532)
                         .+.++++.|+||.++.+| ...|+++++ +++++.++......+. +.++..++.+...++    .+....++..++
T Consensus       224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (399)
T 1c7n_A          224 EQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKN  302 (399)
T ss_dssp             HHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence               356799999999998555 356888886 5788888776555432 456665555544443    244444556677


Q ss_pred             HHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCccccccc
Q 009523          408 ALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       408 a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~  485 (532)
                      ++.+.+.|++ +|++.. ..|                ..+.+++++++........+.+.|. ..++.+..|..+.    
T Consensus       303 ~~~l~~~L~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----  361 (399)
T 1c7n_A          303 QRIVKDFFEVNHPEIKA-PLI----------------EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG----  361 (399)
T ss_dssp             HHHHHHHHHHHCTTSBC-CCC----------------SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC----
T ss_pred             HHHHHHHHHhhCCCCeE-ecC----------------CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccC----
Confidence            8888888887 666531 111                1244567888631012345666663 5577666654321    


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                      +                 ..++.||||++..  +.++.++.|.++++
T Consensus       362 ~-----------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~  391 (399)
T 1c7n_A          362 D-----------------GGIGFERINLAAPSSVIQESLERLNKALK  391 (399)
T ss_dssp             G-----------------GGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             C-----------------CCCCeEEEEeccCHHHHHHHHHHHHHHHH
Confidence            0                 0257899999975  23344445555544

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.94  E-value=1.7e-25  Score=232.96  Aligned_cols=260  Identities=15%  Similarity=0.174  Sum_probs=194.0

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      |+++..+...+||+++++++|.++.++++||++|+.+++.++ +++||+|+++.++|+++...    +...|+++++++.
T Consensus        32 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~v~~  107 (388)
T 1b9h_A           32 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQA----AQRLGAVTVPVDV  107 (388)
T ss_dssp             CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECB
T ss_pred             eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEec
Confidence            455677889999999999999988999999999999999999 89999999999999987643    4556888888764


Q ss_pred             C------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---cccccCCcEEEE
Q 009523          274 A------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALSLGADLVLH  344 (532)
Q Consensus       274 ~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---~~l~~gaDivv~  344 (532)
                      +      |+++|++++++ ++++|+   |+||||.+.|+++|.++|+++|+++|+|++++.+...   ....++ |+++.
T Consensus       108 ~~~~~~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~  182 (388)
T 1b9h_A          108 DAATYNLDPEAVAAAVTP-RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF  182 (388)
T ss_dssp             CTTTCCBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred             CCCcCCCCHHHHHHhcCc-CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence            2      79999999987 699888   8999999999999999999999999999999865432   122233 67777


Q ss_pred             CCc--cccCCCCCcEEEEEEeChH-H--HHHHHHHhhh-------------cCC--CccHHHHHHHHHhHHHHHHHHHHH
Q 009523          345 SAT--KFIGGHNDVLAGSISGSGK-L--VTQIRNLHHV-------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQ  404 (532)
Q Consensus       345 S~s--K~lgg~gd~~gG~lv~~~~-l--i~~l~~~~~~-------------~G~--~~~~~~a~l~l~~l~tl~~r~~~~  404 (532)
                      |+|  |+++|+   .+|+++++++ +  ++.++.....             .|.  .+++..++++...++.+..++++.
T Consensus       183 S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~  259 (388)
T 1b9h_A          183 SFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR  259 (388)
T ss_dssp             ECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred             EccCCCcccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            766  777664   3788888775 5  5665543210             022  256676666666777777777888


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCC
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      .++++++.+.|+++|++. +..+.-...          ...+.+++|.+++. ......+.+.|...++.++.|
T Consensus       260 ~~~~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~  322 (388)
T 1b9h_A          260 DERWTLLSRLLGAIDGVV-PQGGDVRAD----------RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAA  322 (388)
T ss_dssp             HHHHHHHHHHHHTSTTCE-ECCCCTTCC----------BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHhccCCCcc-ccCCCcCCC----------ccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccc
Confidence            888999999999887764 222110000          11367899999752 234566777776567777654

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=6.4e-26  Score=234.65  Aligned_cols=302  Identities=16%  Similarity=0.148  Sum_probs=206.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      .++...+|+++++++++.+++++++||++|+..++.++ +++||+|+++.++|+++..    .+...|+++.+++.+   
T Consensus        36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~  111 (374)
T 3uwc_A           36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVG----AIVQAGATPVLVDSENGY  111 (374)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHH----HHHHTTCEEEEECBCTTS
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCC
Confidence            57889999999999999999999999999999999999 9999999999999998654    345678899888865   


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEEEECCc--c
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--K  348 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDivv~S~s--K  348 (532)
                        |+++|++++++ ++++|+   |+||||.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|+|  |
T Consensus       112 ~~d~~~l~~~~~~-~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K  187 (374)
T 3uwc_A          112 VIDPEKIEAAITD-KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLK  187 (374)
T ss_dssp             SBCGGGTGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred             CcCHHHHHHhCCC-CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCC
Confidence              89999999987 799888   8999999999999999999999999999998865433333333  799999977  9


Q ss_pred             ccCCCCCcEEEEEEeCh-HHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGSG-KLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~-~li~~l~~~~~~------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L  415 (532)
                      ++++++.  +|++++++ ++.+.++.....            ....+.+..+.+....++.+....++..++++++.+.|
T Consensus       188 ~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l  265 (374)
T 3uwc_A          188 NLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSF  265 (374)
T ss_dssp             SSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998553  78887654 676776654321            11224566666555555556666677778888888888


Q ss_pred             HhCCC-ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc---
Q 009523          416 EAHPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY---  491 (532)
Q Consensus       416 ~~~p~-v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~---  491 (532)
                      ++.+. +.   .|..+....         ..-..+.+... +   ...+.+.|...++.++.|....+.+.|.....   
T Consensus       266 ~~~~~~~~---~~~~~~~~~---------~~~~~~~~~~~-~---~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~  329 (374)
T 3uwc_A          266 VDLSEFID---VPVRREGVY---------HVFHIYVLRVK-Y---RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQ  329 (374)
T ss_dssp             GGGTTTEE---CCCCCTTEE---------CCCSSEEEEET-T---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCC
T ss_pred             ccCCCeEE---eccCCCCCc---------eeeEEEEEEcC-C---HHHHHHHHHHCCCccccCCCCccccChhhhhcCCc
Confidence            87765 42   222111000         00012334333 2   34455555555777776643333333322110   


Q ss_pred             -cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          492 -WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       492 -~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                       ..++...    .+..+.|||+++...+++.++.+.++|+
T Consensus       330 ~~~~~~~~----~~~~~~lrl~~~~~~t~edi~~~~~~l~  365 (374)
T 3uwc_A          330 QGDFPMAE----KHGEAVITLPAHPYLTEEEINYIIKKVR  365 (374)
T ss_dssp             TTSCHHHH----HHHHHEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             cCCCccHH----HHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence             0111111    1123689999987666555555555554

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=3.3e-25  Score=231.53  Aligned_cols=264  Identities=17%  Similarity=0.185  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...++++++++++    |.    ++++++++|++|+..++.+++++||+|++++++|++....    ++..|.++..++.
T Consensus        79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~  154 (389)
T 1o4s_A           79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQ----IILAGGTVNVVET  154 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEec
Confidence            4678888888877    53    4677778888999999999999999999999999986543    3456888877754


Q ss_pred             C-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc---
Q 009523          274 A-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS---  336 (532)
Q Consensus       274 ~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~---  336 (532)
                      +       |+++|++++++ ++++|++++|+||||.++|   +++|+++|+++|+++|+|++|+.+..    .....   
T Consensus       155 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~  233 (389)
T 1o4s_A          155 FMSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE  233 (389)
T ss_dssp             CGGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred             CCccCCCCCHHHHHHhccc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence            2       78999999987 7999999999999999988   88999999999999999999875432    11111   


Q ss_pred             -cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Q 009523          337 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       337 -~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-l~~r~~~~~~~a~~la~~  414 (532)
                       .+.|+++.|+||++|.+| ...|++++++++++.++..........++..++.+...++. +....++..++++.+.+.
T Consensus       234 ~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~  312 (389)
T 1o4s_A          234 GFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVER  312 (389)
T ss_dssp             SSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             368999999999998554 45799999999988887765544444566655555544432 333445566778888888


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccccccC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      |++. ++. +..|                ..|.++++.++.   ....+.+.|. ..++.+..|..+             
T Consensus       313 L~~~-g~~-~~~~----------------~~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~f-------------  358 (389)
T 1o4s_A          313 LKKM-GVK-FVEP----------------EGAFYLFFKVRG---DDVKFCERLLEEKKVALVPGSAF-------------  358 (389)
T ss_dssp             HHHT-TCC-CCCC----------------SBSSEEEEECSS---CHHHHHHHHHHHHCEECEEGGGG-------------
T ss_pred             HHhc-CCe-eecC----------------CcceEEEEeCCC---CHHHHHHHHHHHCCEEEeCchhc-------------
Confidence            8875 332 1111                135577888751   2334555543 446666555332             


Q ss_pred             CCHHHHHhcCCCCCeEEEEecC
Q 009523          494 LSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                               +. ++.+|||++.
T Consensus       359 ---------~~-~~~~Ris~~~  370 (389)
T 1o4s_A          359 ---------LK-PGFVRLSFAT  370 (389)
T ss_dssp             ---------TC-TTEEEEECCS
T ss_pred             ---------CC-CCeEEEEEeC
Confidence                     11 3689999996

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.94  E-value=4.2e-25  Score=228.94  Aligned_cols=302  Identities=17%  Similarity=0.205  Sum_probs=217.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      .++...++|+++++++|.+++++++||++|+..++.++ +++||+|+++.++|+++...    +...|.++++++.+   
T Consensus        33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~----~~~~G~~~~~~~~~~~~  108 (367)
T 3nyt_A           33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAET----VALLGAKPVYVDIDPRT  108 (367)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEecCCcc
Confidence            57889999999999999999999999999999999999 89999999999999987644    34568888888743   


Q ss_pred             ---CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCC--cEEEECC--c
Q 009523          275 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--T  347 (532)
Q Consensus       275 ---dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~ga--Divv~S~--s  347 (532)
                         |+++|++++++ ++++|+   |+||+|...|+++|.++|+++|+++|+|++++.+........+.  |+++.|+  +
T Consensus       109 ~~~d~~~l~~~i~~-~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~  184 (367)
T 3nyt_A          109 YNLDPQLLEAAITP-RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPS  184 (367)
T ss_dssp             CSBCGGGTGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTT
T ss_pred             CCcCHHHHHHhcCc-CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCC
Confidence               78999999987 799888   78899999999999999999999999999987654444333444  9999996  8


Q ss_pred             cccCCCCCcEEEEEEe-ChHHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~-~~~li~~l~~~~~~------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~  414 (532)
                      |++++.|.  +|+++. ++++.+.++.....            ++..+++..+++++..++.+....++..++++++.+.
T Consensus       185 K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~  262 (367)
T 3nyt_A          185 APLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLS  262 (367)
T ss_dssp             SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998663  788887 46777777664431            2345678888887878887777778888888999999


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc-cccC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM-SYWD  493 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~-s~~~  493 (532)
                      |++.+ +   ..|..+...         .....++.+.++ +   ...+.+.|+..++.++.+....+...|... ....
T Consensus       263 L~~~~-~---~~~~~~~~~---------~~~~~~~~~~~~-~---~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~  325 (367)
T 3nyt_A          263 LKQVG-I---GTPFIEVNN---------ISVYAQYTVRMD-N---RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAK  325 (367)
T ss_dssp             HHHTT-C---CCCCCCTTE---------ECCCSSEEEECS-S---HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCC
T ss_pred             hccCC-e---eccCCCCCC---------ceeeEEEEEEeC-C---HHHHHHHHHHCCCceeccCCCccccChhhhccCCC
Confidence            98864 2   122211100         001224455554 2   234455555446666655332232333321 1111


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++..+.    +.++.|||+++...+++.++.+.+++.+
T Consensus       326 ~~~~~~----~~~~~l~lp~~~~~t~~~i~~v~~~~~~  359 (367)
T 3nyt_A          326 LPVGDK----AATQVMSLPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             CHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred             ChHHHH----HHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            222111    2356899999998888888888888764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.94  E-value=2.3e-25  Score=235.56  Aligned_cols=295  Identities=16%  Similarity=0.147  Sum_probs=205.0

Q ss_pred             CCCchh-HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhc--cCCC--EEEEcCCCCcchHHHHHHhccc
Q 009523          197 RYGNPT-TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALV--PAGG--HIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~g--------a~~~i~~sSG~~Ai~~al~all--~~Gd--~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      +|+.+. ..+++++++++++        .++++++++|++|+.+++.+++  ++||  +|+++.++|.+....    +..
T Consensus        77 ~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~----~~~  152 (437)
T 3g0t_A           77 IYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQ----CRI  152 (437)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHH----HHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHH----HHH
Confidence            344443 4788888888876        3467777888899999999998  9999  999999999986543    344


Q ss_pred             CCcEEEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          264 MGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       264 ~Gv~v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                      .|.++..++.+      |+++|+++++..++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+....   
T Consensus       153 ~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~  232 (437)
T 3g0t_A          153 LGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD  232 (437)
T ss_dssp             HTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC
T ss_pred             cCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC
Confidence            57777777643      7899999994337999999999999999997   66789999999999999999864211   


Q ss_pred             --c-------ccc--ccCCcEEEECCccccCCCCCcEEEEEEeChHHHH-H-----------------HHHHhhhcCCCc
Q 009523          332 --Q-------KAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-Q-----------------IRNLHHVLGGAL  382 (532)
Q Consensus       332 --~-------~~l--~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-~-----------------l~~~~~~~G~~~  382 (532)
                        .       ..+  ..+.++++.|+||.++.+| ...|++++++++++ .                 +...........
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (437)
T 3g0t_A          233 YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGA  311 (437)
T ss_dssp             CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSS
T ss_pred             cCcccccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCC
Confidence              1       111  2467799999999998554 45789999998888 7                 655544444456


Q ss_pred             cHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          383 NPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       383 ~~~~a~l~l~~l~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      ++..++.+...++.       +..+.++..++++.+.+.|+++ ++. +.+|.-...|         ...|.++++.+++
T Consensus       312 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~---------~~~~~~~~~~~~~  380 (437)
T 3g0t_A          312 THSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFN-IVYDKDGNEP---------LADGFYFTVGYKG  380 (437)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEE-ESSCEETTEE---------CCSSSEEEEEETT
T ss_pred             CHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCE-EeccccCCCC---------CceeEEEEEecCC
Confidence            66666666555554       4455666778888889999887 442 3211000000         0146688999873


Q ss_pred             CHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHh
Q 009523          456 DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH  530 (532)
Q Consensus       456 ~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~---ed~~dli~dL~~AL~  530 (532)
                        .....+.+.|...++.+..|..+..                     ..++.+|||++.   ++.+.+++.|.++++
T Consensus       381 --~~~~~l~~~L~~~gi~v~~~~~~~~---------------------~~~~~iRis~~~~~~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          381 --MDSSKLIEKFVRYGMCAITLKTTGS---------------------KRNEAMRICTSLLPESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             --CCHHHHHHHHHHTTEECEESTTTTC---------------------CCTTCEEEECSSSCGGGHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHcCeEEeeccccCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence              2344555665555777766543210                     013789999995   445666666666554

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.94  E-value=2.7e-25  Score=231.77  Aligned_cols=282  Identities=15%  Similarity=0.120  Sum_probs=197.7

Q ss_pred             HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          203 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       203 ~~~Le~~lA~l~g--------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      ..+++++++++++        .++++++++|++|+.+++.+++++||+|+++.++|.+...    .++..|+++..++.+
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~~~  145 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ----ILRALGLVPVDLPTA  145 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHHTTCEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH----HHHHcCCEEEEeecC
Confidence            5678888888763        2568888888999999999999999999999999988653    345568888887653


Q ss_pred             -------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc-cCC
Q 009523          275 -------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-LGA  339 (532)
Q Consensus       275 -------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~-~ga  339 (532)
                             |+++|+++    ++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|+....    ..... .+.
T Consensus       146 ~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  221 (391)
T 3h14_A          146 PENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE  221 (391)
T ss_dssp             GGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred             cccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence                   77777765    5899999999999999998   78899999999999999999875321    12222 246


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR---GMKTLHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~---~l~tl~~r~~~~~~~a~~la~~L~  416 (532)
                      ++++.|+||.+|.+| ...|++++++++++.++......+.+.++..++.+..   ..+.+..+.++..++++.+.+.|+
T Consensus       222 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  300 (391)
T 3h14_A          222 CYVINSFSKYFSMTG-WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLP  300 (391)
T ss_dssp             SEEEEESSSTTCCTT-SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEechhccCCcc-ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999998555 4578999999999988877666666666665554433   334555666677788888888888


Q ss_pred             hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccccccCccccccCCC
Q 009523          417 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       417 ~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      +++.+ .+..|.                .+.++++.++........+.+.|.. .++.++.|..+..             
T Consensus       301 ~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------  350 (391)
T 3h14_A          301 KAGFT-RIAPPD----------------GAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP-------------  350 (391)
T ss_dssp             HHTCC-CBCCCC----------------BTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT-------------
T ss_pred             HcCCC-cccCCC----------------eeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC-------------
Confidence            76432 111111                3457788886311233445555332 3677777654321             


Q ss_pred             HHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                             +..++.||||++..  +.++.++.|.++++
T Consensus       351 -------~~~~~~iRis~~~~~~~i~~~l~~l~~~~~  380 (391)
T 3h14_A          351 -------ERGAGTLRFSYARATADIEEGLDRLEAFMQ  380 (391)
T ss_dssp             -------TTGGGEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                   01257999999982  23334455555544

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.94  E-value=3.4e-25  Score=234.02  Aligned_cols=296  Identities=16%  Similarity=0.137  Sum_probs=204.8

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhC--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~g--a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ..+.|+....+..+++++.+++.+|  .  +.++++++|++|+..++++++++||+|++..+.|++....    +...|.
T Consensus        90 ~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~----~~~~g~  165 (421)
T 3l8a_A           90 HIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFART----IRLNDH  165 (421)
T ss_dssp             CCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHH----HHHTTE
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHH----HHHCCC
Confidence            3577877777778888888888877  2  4577788888999999999999999999999999986543    344577


Q ss_pred             EEEEeCC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          267 TATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       267 ~v~~vd~--------~dle~Le~al~~~~tklV~lesP~NptG~v~---dl~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                      ++..++.        .|+++|++++++.++++|++++|+||+|.+.   ++++|+++|+++|+++|+||+|.....    
T Consensus       166 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~  245 (421)
T 3l8a_A          166 RLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT  245 (421)
T ss_dssp             EEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred             EEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence            7776653        3899999999833799999999999999994   588999999999999999999764321    


Q ss_pred             -ccccc-----cCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCC-CccHHHHHHHHHhHH----HHHH
Q 009523          332 -QKALS-----LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHL  399 (532)
Q Consensus       332 -~~~l~-----~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~-~~~~~~a~l~l~~l~----tl~~  399 (532)
                       .....     .+.++++.|++|.+|.+| ...|+++.+ +++.+.++......+. ..++..+..+...++    .+..
T Consensus       246 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~  324 (421)
T 3l8a_A          246 HHSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEE  324 (421)
T ss_dssp             CCCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred             CccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence             11111     245699999999998555 457888887 7888888765533332 456665555444443    2455


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCC
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGG  478 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~  478 (532)
                      ..++..++.+++.+.|+++|++..+. |.                .+.++|++++........+.+.| +..++.++.|.
T Consensus       325 ~~~~~~~~~~~l~~~L~~~~~i~~~~-~~----------------~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~  387 (421)
T 3l8a_A          325 LKTVIEGNIKLVIKELEAKTKIKVME-PE----------------GTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGA  387 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCEEEC-CS----------------BSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEeC-CC----------------eeEEEEEeccccCCCHHHHHHHHHHhCCEEEECch
Confidence            55666778888888888777665432 21                23456688763101233445555 34577777665


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL  529 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL  529 (532)
                      .+..                     ..++.|||+++..  +.++.++.|.+++
T Consensus       388 ~f~~---------------------~~~~~iRi~~~~~~~~i~~~l~~l~~~l  419 (421)
T 3l8a_A          388 HFGK---------------------EGKYFARLNVATPKNTVQEALSRIISVF  419 (421)
T ss_dssp             GGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             hhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence            4320                     1268999999952  2333444444444

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.94  E-value=3.4e-25  Score=227.54  Aligned_cols=282  Identities=10%  Similarity=0.085  Sum_probs=206.1

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+++...+|++++|+++|.+  +++++++|++|+.+++.++.  ||+|+++.|+|.+..    ..++..|.++..++
T Consensus        44 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~----~~~~~~g~~~~~v~  117 (350)
T 3fkd_A           44 IRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYE----DACRMYEHEVCFYP  117 (350)
T ss_dssp             GGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHH----HHHHHTTCEEEEEE
T ss_pred             HhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHH----HHHHHcCCeEEEEe
Confidence            45566666689999999999973  67777777899999999887  999999999998855    34556789999888


Q ss_pred             C-CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-CEEEEECCCCCCCccc------ccccCCcEEEE
Q 009523          273 P-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQK------ALSLGADLVLH  344 (532)
Q Consensus       273 ~-~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~g-i~lIvDet~a~~~~~~------~l~~gaDivv~  344 (532)
                      . ++.+.+..   + ++++|++++|+||||.++|++++.++++.++ .++|+|++|.......      ....+.++++.
T Consensus       118 ~~~~~~~~~~---~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~  193 (350)
T 3fkd_A          118 SNEDIGEADF---S-NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY  193 (350)
T ss_dssp             TTSCGGGSCC---T-TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred             cCCccccCcc---C-CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence            7 44333321   3 6999999999999999999999999998875 7999999986532211      11235669999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      |+||.++.+| ...|++++++++++.++.....  ...++..++.+...++..   ..++++..++++++.+.|+++|++
T Consensus       194 S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  270 (350)
T 3fkd_A          194 SFSHAYGIPG-LRIGYIVANKDFMKRVAAFSTP--WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGV  270 (350)
T ss_dssp             ESHHHHSCGG-GCCEEEECCHHHHHHHHTTCCT--TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTE
T ss_pred             cCchhccCcc-hheEeEEeCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999998554 4578999999999988776543  345667666666666542   244555568888999999988776


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccccccCccccccCCCHHHHH
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      . + +|.                .|+++++.++..  ....+.+.|.. .++.++.|..+.                   
T Consensus       271 ~-~-~~~----------------~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~-------------------  311 (350)
T 3fkd_A          271 E-V-HPS----------------GTTFFLLRLKKG--TAAELKKYMLEEYNMLIRDASNFR-------------------  311 (350)
T ss_dssp             E-E-CCC----------------SSSEEEEEESSS--CHHHHHHHHHHTTCEECEECTTST-------------------
T ss_pred             E-E-CCC----------------CCcEEEEECCCC--CHHHHHHHHHHHCCEEEEeCccCC-------------------
Confidence            4 2 232                366888999753  34566666665 688888775531                   


Q ss_pred             hcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009523          501 KYGIMDNLVRFSFGVE-DFEDLKADVLQALH  530 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~e-d~~dli~dL~~AL~  530 (532)
                        +..+++||||++.+ +.+++++.|++.++
T Consensus       312 --~~~~~~iRis~~~~~~~~~l~~al~~~~~  340 (350)
T 3fkd_A          312 --GLDESYVRITTQRPAQNQLFIKALETFLE  340 (350)
T ss_dssp             --TCCTTEEEEECCCHHHHHHHHHHHHHHHT
T ss_pred             --CCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence              12368999999963 34566666666654

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.94  E-value=5.4e-25  Score=229.55  Aligned_cols=289  Identities=16%  Similarity=0.149  Sum_probs=201.9

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC----------CCEEEEcCCCCcchHHHHHHhc
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA----------GGHIVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~----------Gd~VIv~~~~y~~t~~~~~~~l  261 (532)
                      .+.+..+.++..+++++++++++|.+++++++||++|+..++..+..+          ||+|++..++|++.........
T Consensus        69 ~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  148 (392)
T 3ruy_A           69 TLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMS  148 (392)
T ss_dssp             SCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred             cccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhcc
Confidence            344455778999999999999999888999999999999999877654          6799999999987543322211


Q ss_pred             cc---------CCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCC
Q 009523          262 PK---------MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       262 ~~---------~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~  328 (532)
                      ..         ....+..++.+|+++|++++++ ++++|++++|+||||.+.|    +++|.++|++||+++|+|+++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~  227 (392)
T 3ruy_A          149 SNEEYKRGFGPMLPGIIVIPYGDLEALKAAITP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG  227 (392)
T ss_dssp             SCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCT-TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred             CChhhccccCCCCCCCeeeCcccHHHHHHHhcc-CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence            11         1123566677799999999986 7999999999999999998    99999999999999999999853


Q ss_pred             C------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HH
Q 009523          329 P------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LR  400 (532)
Q Consensus       329 ~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r  400 (532)
                      .      ..........|+++  +||.++| |...+|++++++++++.+...........++..++.+...++.+.  ..
T Consensus       228 ~~~~g~~~~~~~~~~~~d~~~--~SK~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  304 (392)
T 3ruy_A          228 LGRTGKVFACDWDNVTPDMYI--LGKALGG-GVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKL  304 (392)
T ss_dssp             TTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred             CCccccchhhhccCCCCCEEE--EchhhhC-ChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence            2      11222334568775  5699987 324579999999888776654443444567777777766666553  33


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          401 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       401 ~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      .++..++++++.+.|++...      |.+.          ...+.|+++++.+++   ....+.+.|...++.++.|+  
T Consensus       305 ~~~~~~~~~~l~~~L~~~~~------~~~~----------~~~~~g~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~--  363 (392)
T 3ruy_A          305 TERSLQLGEKLVGQLKEIDN------PMIT----------EVRGKGLFIGIELNE---PARPYCEQLKAAGLLCKETH--  363 (392)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC------TTEE----------EEEEETTEEEEEESS---CSHHHHHHHHTTTEECCCBT--
T ss_pred             HHHHHHHHHHHHHHHHHhcC------CCce----------EEEeeeeEEEEEEcc---hHHHHHHHHHHCCcEEecCC--
Confidence            44555677777777776421      1110          012247789998875   23456666665666655431  


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                               ++.|||+++...+++.++.+.++|+
T Consensus       364 -------------------------~~~iRi~~~~~~~~~~i~~~~~~l~  388 (392)
T 3ruy_A          364 -------------------------ENVIRIAPPLVISEEDLEWAFQKIK  388 (392)
T ss_dssp             -------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             -------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence                                     4789999776544444444444443

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.94  E-value=4.8e-25  Score=231.79  Aligned_cols=284  Identities=10%  Similarity=0.061  Sum_probs=199.0

Q ss_pred             hhHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l~----ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +...+|++++++++    |.     ++++++++|++|+.+++.+++++||+|+++.|.|++....    +...|.++..+
T Consensus        85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v  160 (404)
T 2o1b_A           85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAG----VLLADGKPVPL  160 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHH----HHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHCCCEEEEe
Confidence            34677888888887    75     3567777778999999999999999999999999986643    34567777776


Q ss_pred             CC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccccc-
Q 009523          272 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL-  337 (532)
Q Consensus       272 d~------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~~-  337 (532)
                      +.      .|+++|++++++ ++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|.....    ...... 
T Consensus       161 ~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  239 (404)
T 2o1b_A          161 NLEPPHYLPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASE  239 (404)
T ss_dssp             ECCTTTCCCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGST
T ss_pred             ccCcccCcCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence            53      367889888876 6999999999999999996   67899999999999999999875421    112222 


Q ss_pred             ---CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHH
Q 009523          338 ---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR  410 (532)
Q Consensus       338 ---gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~  410 (532)
                         +.|+++.|+||++|.+| ...|++++++++++.++..........++..++.+...++.    +....++..++++.
T Consensus       240 ~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  318 (404)
T 2o1b_A          240 NGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDR  318 (404)
T ss_dssp             THHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecchhccCch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence               45799999999998554 45789999999999888766555555666666665555544    33444555677788


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|+++ ++. +..|.                .|.++++.++.+ .....+.+.|. ..++.+..|..+..       
T Consensus       319 l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~-------  372 (404)
T 2o1b_A          319 FEAMLAKA-DLP-FVHAK----------------GGIYVWLETPPG-YDSEQFEQFLVQEKSILVAPGKPFGE-------  372 (404)
T ss_dssp             HHHHHHHT-TCC-EECCC----------------BSSEEEEECCTT-CCHHHHHHHHHHHHCEECEESGGGCG-------
T ss_pred             HHHHHHhc-CCe-ecCCC----------------cceEEEEeCCCC-CCHHHHHHHHHHHCCEEEeCchhhCc-------
Confidence            88888876 443 22121                244688888632 12334454432 34666666644210       


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                                    ..++.+|||++.  ++.++.++.|.++++
T Consensus       373 --------------~~~~~iRis~~~~~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          373 --------------NGNRYVRISLALDDQKLDEAAIRLTELAY  401 (404)
T ss_dssp             --------------GGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred             --------------CCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence                          025789999996  234444555555544

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=2.9e-25  Score=232.47  Aligned_cols=289  Identities=11%  Similarity=0.081  Sum_probs=201.9

Q ss_pred             chhHHHHHHHHHhhhCCCc--EE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          200 NPTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~--~i-~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+..+++++++++++|.+.  .+ +++||++|+..++.+++++||+|+++++.|++..  +...++..|++++.++.+  
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  120 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWG  120 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCC
Confidence            5668899999999999743  34 6678889999999999999999999999998732  334566778898888754  


Q ss_pred             ---CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCcccc
Q 009523          275 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       275 ---dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~l  350 (532)
                         |+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. ..+....++|+++.|+||++
T Consensus       121 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l  200 (416)
T 3isl_A          121 TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCL  200 (416)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCcccc
Confidence               89999999973369999999999999999999999999999999999999987543 23444568999999999985


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHHh--------------------------------------hhcCCCccHHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNLH--------------------------------------HVLGGALNPNAAYLIIR  392 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~~--------------------------------------~~~G~~~~~~~a~l~l~  392 (532)
                      +++.  ..|+++.++++++.+....                                      ....++.+......+..
T Consensus       201 ~g~~--g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  278 (416)
T 3isl_A          201 SVPS--GMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALRE  278 (416)
T ss_dssp             CCCS--SEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHH
T ss_pred             CCCC--CeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHH
Confidence            5543  2688999999888776321                                      00112334443333333


Q ss_pred             hHHH-----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc
Q 009523          393 GMKT-----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL  467 (532)
Q Consensus       393 ~l~t-----l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L  467 (532)
                      +++.     +....++..++++++.+.|++. ++. +..|.     .        ...+++++|.++.+ .....+.+.|
T Consensus       279 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~l~~~L  342 (416)
T 3isl_A          279 GVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLR-LFGDD-----S--------CKMPVVTCVEIPGG-IDGESVRDML  342 (416)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BCSCG-----G--------GBCTTEEEEECCTT-CCHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE-eccCc-----c--------ccCCcEEEEeCCCC-CCHHHHHHHH
Confidence            3332     3445566667788888888874 332 11111     0        12467899998632 2234555555


Q ss_pred             CCC-ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CC-HHHHHHHHHHHHhh
Q 009523          468 KIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----ED-FEDLKADVLQALHA  531 (532)
Q Consensus       468 ~~~-~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed-~~dli~dL~~AL~~  531 (532)
                      ... ++.++.|..                       ...++.|||+++.    ++ .+++++.|.+++++
T Consensus       343 ~~~~gi~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          343 LAQFGIEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             HHHHCEECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCEEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence            433 677666531                       1236799999932    33 56666667666653

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.94  E-value=8.8e-25  Score=229.86  Aligned_cols=285  Identities=13%  Similarity=0.111  Sum_probs=199.2

Q ss_pred             chhHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          200 NPTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~----ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .+...+|++++++++    |.     ++++++++|++|+.+++.+++++||+|+++.++|++....    +...|.++..
T Consensus        74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~  149 (412)
T 2x5d_A           74 SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYG----AVIAGAQVRS  149 (412)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHHTCEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEE
Confidence            344678888888888    63     4688888889999999999999999999999999986543    3445777777


Q ss_pred             eCCC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----cccc
Q 009523          271 IDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKAL  335 (532)
Q Consensus       271 vd~~-------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l  335 (532)
                      ++.+       |+++|++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+..     ....
T Consensus       150 ~~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~  228 (412)
T 2x5d_A          150 VPLVPGIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIM  228 (412)
T ss_dssp             EECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred             eecCCccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChh
Confidence            6543       46889999886 6999999999999999987   57899999999999999999875431     1111


Q ss_pred             c----cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHH
Q 009523          336 S----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNST  407 (532)
Q Consensus       336 ~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~  407 (532)
                      .    .+.|+++.|+||++|.+| ...|++++++++++.++......+.+.++..++.+...++.    +....++..++
T Consensus       229 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  307 (412)
T 2x5d_A          229 QVPGAKDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQR  307 (412)
T ss_dssp             GSTTGGGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred             hccCccCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1    367899999999998555 35789999999999888766554555667666655555543    34445556677


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHHc-CCCceeecCCCcccccc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDAL-KIPYIAPSFGGCESIVD  484 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--~~~~~~l~~L-~~~~i~vs~G~~~sl~~  484 (532)
                      ++.+.+.|+++ ++. +..|                ..|.++++.++.+.  .....+.+.| +..++.+..|..+.   
T Consensus       308 ~~~l~~~L~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---  366 (412)
T 2x5d_A          308 RDVLVKGLREA-GWM-VENP----------------KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFG---  366 (412)
T ss_dssp             HHHHHHHHHHH-TCC-CCCC----------------SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGC---
T ss_pred             HHHHHHHHHHC-CCE-ecCC----------------CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhC---
Confidence            78888888775 332 1111                12457888886321  0234555555 23467666664321   


Q ss_pred             cCccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009523          485 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH  530 (532)
Q Consensus       485 ~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~  530 (532)
                       +                 ..++.||||++. +.   ++.++.|.++++
T Consensus       367 -~-----------------~~~~~iRis~~~-~~~~l~~~l~~l~~~l~  396 (412)
T 2x5d_A          367 -D-----------------YGDDHVRFALIE-NRDRLRQAVRGIKAMFR  396 (412)
T ss_dssp             -G-----------------GGTTEEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred             -C-----------------CCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence             0                 025789999997 33   334444555554

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.94  E-value=1.8e-24  Score=224.66  Aligned_cols=284  Identities=16%  Similarity=0.145  Sum_probs=200.5

Q ss_pred             CCCch-hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          197 RYGNP-TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       197 R~~~p-~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      +|+.+ ...+|+++++++++.  ++++++++|++|+..++.+++++||+|+++.++|++...    .++..|.++..++.
T Consensus        56 ~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~  131 (381)
T 1v2d_A           56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP----DAFLAGAKARLVRL  131 (381)
T ss_dssp             SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEeC
Confidence            34443 577899999999987  368888888999999999999999999999999998653    34556788777764


Q ss_pred             C--------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc--c
Q 009523          274 A--------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL--S  336 (532)
Q Consensus       274 ~--------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l--~  336 (532)
                      +        |+++|++++++ ++++|++++|+||||.+.|   +++|.++|+++|+++|+|+++.....    ....  .
T Consensus       132 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~  210 (381)
T 1v2d_A          132 DLTPEGFRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA  210 (381)
T ss_dssp             EEETTEEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred             CCCCccCCcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhc
Confidence            3        79999999986 7999999999999999987   78999999999999999999875421    1122  3


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALR  410 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a~~  410 (532)
                      .+.|+++.|+||+++.+| ...|++++++++++.++........+.++...+.+...++.      +....++..+++++
T Consensus       211 ~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  289 (381)
T 1v2d_A          211 PERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL  289 (381)
T ss_dssp             TTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            478999999999998555 45789999998988887655544444555555544444443      23344556677788


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|++. ++. +..|.                .|.++++.+++. + .   ...+...++.+..|..+..  .     
T Consensus       290 l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~-~-~---~~~l~~~gi~v~~g~~~~~--~-----  339 (381)
T 1v2d_A          290 LAGGLRAM-GLR-VYVPE----------------GTYFLMAELPGW-D-A---FRLVEEARVALIPASAFYL--E-----  339 (381)
T ss_dssp             HHHHHHHT-TCC-EECCS----------------BSSEEEEECTTC-C-H---HHHHHHTCEECEEGGGGCS--S-----
T ss_pred             HHHHHHHC-CCE-ecCCC----------------cceEEEEecChH-h-H---HHHHHhCCEEEecchHhCC--C-----
Confidence            88888773 443 22221                355788888753 2 2   3333344666665543210  0     


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCCHH---HHHHHHHHHH
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVEDFE---DLKADVLQAL  529 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed~~---dli~dL~~AL  529 (532)
                                  +..++.+|||++. +.+   ++++.|.+++
T Consensus       340 ------------~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l  368 (381)
T 1v2d_A          340 ------------DPPKDLFRFAFCK-TEEELHLALERLGRVV  368 (381)
T ss_dssp             ------------SCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred             ------------CCCCCEEEEEeCC-CHHHHHHHHHHHHHHH
Confidence                        0135799999997 433   3344444443

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.94  E-value=2.7e-25  Score=228.71  Aligned_cols=255  Identities=15%  Similarity=0.134  Sum_probs=185.6

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCC--EEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd--~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      ++...+|+++|++++|.+..+++++|++|+..++.+++.+||  .|+++.+.|...+... ......|+++..++.    
T Consensus        46 ~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~  124 (357)
T 3lws_A           46 GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLKELHPIETILVGAADRL  124 (357)
T ss_dssp             ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHSSCEEEECSCTTSC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhhhccCcEEEEecCCCCC
Confidence            588999999999999998889999999999999999999998  6777666654432110 012334888887764    


Q ss_pred             CCHHHHHHhhcCCCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEECCCCC------CCcccccccCCcEEE
Q 009523          274 ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVL  343 (532)
Q Consensus       274 ~dle~Le~al~~~~tklV~lesP~Npt-G~v~d---l~~I~~la~~~gi~lIvDet~a~------~~~~~~l~~gaDivv  343 (532)
                      .|+++|+++.   ++++|++++|+||+ |.+.+   +++|+++|++||+++|+|+++..      +.....+..+.|+++
T Consensus       125 ~d~~~l~~~~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~  201 (357)
T 3lws_A          125 MTLDEIKALP---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIY  201 (357)
T ss_dssp             CCHHHHHTCC---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEE
T ss_pred             cCHHHHhcCc---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEE
Confidence            3789998873   38999999999998 99886   88899999999999999998651      111222334578999


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~--~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      .|+||+++++.   +|++++++++++.++.....++...  ....+..+..+++....++++..++++++.+.|+++|++
T Consensus       202 ~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~  278 (357)
T 3lws_A          202 ISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGV  278 (357)
T ss_dssp             EESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTE
T ss_pred             EeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999996654   5999999999998887665555332  222233334556665566666778889999999998877


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCC
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G  477 (532)
                      .....|.                .++++++.+++.. .....+.+.|...++.+..|
T Consensus       279 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g  319 (357)
T 3lws_A          279 HTTPEVP----------------VSNMFHLHFDGQAADISPKLEQVQEETGLGFVGY  319 (357)
T ss_dssp             EEESSSC----------------SSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSC
T ss_pred             eeccCCC----------------cceEEEEEecCChHHHHHHHHHHHHhcCeEEecc
Confidence            5323332                3678999997642 22456666666667777766

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.94  E-value=5.2e-25  Score=230.34  Aligned_cols=304  Identities=15%  Similarity=0.155  Sum_probs=220.1

Q ss_pred             chhHHHHHHHH-HhhhC-CCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          200 NPTTVVVEEKM-SALEG-AESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       200 ~p~~~~Le~~l-A~l~g-a~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .|...+||+++ |+++| .+++++++||++|+.+++.++ +++||+||++.++|.++...    +...|+++++++.+  
T Consensus        35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~----~~~~G~~~~~v~~~~~  110 (377)
T 3ju7_A           35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLA----AIWCGLEPYFIDISID  110 (377)
T ss_dssp             CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTT
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCc
Confidence            48899999999 99999 788999999999999999998 89999999999999987643    44568999888743  


Q ss_pred             ----CHHHHHHhh-cCCC--eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccccccc---CCcEEEE
Q 009523          275 ----DMEGLEAAL-NNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL---GADLVLH  344 (532)
Q Consensus       275 ----dle~Le~al-~~~~--tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~---gaDivv~  344 (532)
                          |+++|++++ ++ +  |++|+   |+||+|.+.|+++|.++|+ +|+++|+|++++.+........   ..|+.++
T Consensus       111 ~~~~d~~~l~~~i~~~-~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~  185 (377)
T 3ju7_A          111 DWYMDKTVLWDKIEEL-KEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIY  185 (377)
T ss_dssp             TCSBCHHHHHHHHHHH-GGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEE
T ss_pred             cCCcCHHHHHHHHhcC-CCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEE
Confidence                899999988 44 5  89887   6889999999999999999 9999999999876543333333   3688888


Q ss_pred             CC--ccccCCCCCcEEEEEEe-ChHHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009523          345 SA--TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  409 (532)
Q Consensus       345 S~--sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~  409 (532)
                      |+  +|++++ +  .||+++. ++++.++++..+..            ++..++++.+++.+..++++..+++++.++++
T Consensus       186 S~~~~K~l~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~  262 (377)
T 3ju7_A          186 SFHATKPFGI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE  262 (377)
T ss_dssp             ECBTTSSSCC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ECCCCCcCCC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            85  699997 4  3777776 46777777765431            23457888888888999999999999999999


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.+.|++++.+.....|.-..+.           ...++.+.+++. ...+.+++.|+..+|.++.+....+..+|...
T Consensus       263 ~~~~~L~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~  330 (377)
T 3ju7_A          263 WYKQLLQSNGLMKKGWQLQKTEAV-----------IQQFMPILCPEE-VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFR  330 (377)
T ss_dssp             HHHHHHHHTTTTTTTCBCCCCSCB-----------CCSSEEEECCTT-SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGT
T ss_pred             HHHHHhcCCCCccccccCCCCCcc-----------eEEEEEEEeCCh-hhHHHHHHHHHHCCCceecccCCccccchhhh
Confidence            999999988754211112111111           112345555532 22567777777778887766422222333322


Q ss_pred             cc--cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          490 SY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       490 s~--~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +|  ..++..+.    +.++.|||+++...+++.++.+.++|.+
T Consensus       331 ~~~~~~~p~~~~----~~~~~l~lp~~~~~t~~di~~v~~~l~~  370 (377)
T 3ju7_A          331 NYKSTDLTRTNK----IAKRIVSLPLWEGMTKEIVEQIVICLGQ  370 (377)
T ss_dssp             TSCBSCCHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHH----HHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence            22  12222222    2356899999987777777777777654

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.94  E-value=2.6e-24  Score=227.73  Aligned_cols=273  Identities=12%  Similarity=0.104  Sum_probs=185.8

Q ss_pred             cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----CCHHHHHHhhcC--------
Q 009523          218 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNN--------  285 (532)
Q Consensus       218 ~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----~dle~Le~al~~--------  285 (532)
                      +.+++++|++|+.+++.+++++||+|+++.|+|++...    .++..|.++..++.    .|+++|+++++.        
T Consensus       110 ~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~  185 (425)
T 2r2n_A          110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ----SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKN  185 (425)
T ss_dssp             EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH----HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSS
T ss_pred             cEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH----HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhcccccc
Confidence            34555566799999999999999999999999988553    34566888887764    378999998862        


Q ss_pred             ---CCeeEEEE-eCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCc-------cccc-ccCCcEEEECCcccc
Q 009523          286 ---NNVSLFFT-ESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-------QKAL-SLGADLVLHSATKFI  350 (532)
Q Consensus       286 ---~~tklV~l-esP~NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~-------~~~l-~~gaDivv~S~sK~l  350 (532)
                         .++++|++ ++|+||||.+++.+   +|+++|+++|+++|+|++|+....       ...+ ..+.++++.|+||++
T Consensus       186 ~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~  265 (425)
T 2r2n_A          186 PQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII  265 (425)
T ss_dssp             TTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT
T ss_pred             ccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc
Confidence               25889877 68999999999865   899999999999999999763211       1111 124579999999999


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHh-CCC
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------LHLRVQQQNSTALRMAKILEA-HPK  420 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---------l~~r~~~~~~~a~~la~~L~~-~p~  420 (532)
                      + +| ...|++++++++++.+.........+.++..++++...++.         +....++..++++.+.+.|++ .|+
T Consensus       266 ~-~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  343 (425)
T 2r2n_A          266 S-SG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTG  343 (425)
T ss_dssp             C-ST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             c-Cc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            7 44 56799999999999888766655555677666655555543         222233445667777888877 455


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      +..+..|.                .|.++++++++.......+.+.+...++.+..|..+..   +.             
T Consensus       344 ~~~~~~p~----------------~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~---~~-------------  391 (425)
T 2r2n_A          344 LAEWHVPA----------------AGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYV---DS-------------  391 (425)
T ss_dssp             SEEECCCS----------------BSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSS---ST-------------
T ss_pred             CeEEeCCC----------------ceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcC---CC-------------
Confidence            54343332                46789999975211111123344445777777654321   00             


Q ss_pred             hcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009523          501 KYGIMDNLVRFSFGVED---FEDLKADVLQALH  530 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~ed---~~dli~dL~~AL~  530 (532)
                        +..+++||||++..+   .++.++.|.++++
T Consensus       392 --~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  422 (425)
T 2r2n_A          392 --SAPSPYLRASFSSASPEQMDVAFQVLAQLIK  422 (425)
T ss_dssp             --TSCCCEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence              012579999998433   4455556666554

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.94  E-value=9.9e-25  Score=227.10  Aligned_cols=283  Identities=12%  Similarity=0.137  Sum_probs=197.8

Q ss_pred             hHHHHHHHHHhhh----CC----Cc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALE----GA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...++++++++++    |.    ++ ++++++|++|+..++.+++++||+|++++++|++....    ++..|.++..++
T Consensus        64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~  139 (389)
T 1gd9_A           64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPA----VILAGGKPVEVP  139 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHH----HHHHTCEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHCCCEEEEec
Confidence            4567888888877    62    46 88888889999999999999999999999999986543    344577777765


Q ss_pred             C-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----cccc-
Q 009523          273 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS-  336 (532)
Q Consensus       273 ~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~~l~-  336 (532)
                      .       .|+++|++++++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+...     .... 
T Consensus       140 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  218 (389)
T 1gd9_A          140 TYEEDEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL  218 (389)
T ss_dssp             CCGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cCCccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhc
Confidence            3       278999999987 7999999999999999985   889999999999999999998754321     1112 


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNST  407 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~  407 (532)
                         .+.|+++.|+||.++.+| ...|++++++++++.++........+.++...+.+...++.      +....++..++
T Consensus       219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  297 (389)
T 1gd9_A          219 DGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR  297 (389)
T ss_dssp             TTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence               357899999999998555 45799999999998888765544445566655555444432      33344555677


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~p  486 (532)
                      ++.+.+.|+++ ++. +..|                ..|.++++.++........+.+.|. ..++.+..|..+.    +
T Consensus       298 ~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~  355 (389)
T 1gd9_A          298 RKLVWKRLNEM-GLP-TVKP----------------KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG----K  355 (389)
T ss_dssp             HHHHHHHHHHT-TCC-CCCC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC----G
T ss_pred             HHHHHHHHHHc-CCe-ecCC----------------CeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC----C
Confidence            78888888876 332 1111                1244677777520012345555554 5577766654321    0


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH  530 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~  530 (532)
                                       ..++.+|||++. +.   ++.++.|.++++
T Consensus       356 -----------------~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~  384 (389)
T 1gd9_A          356 -----------------AGEGYVRISYAT-AYEKLEEAMDRMERVLK  384 (389)
T ss_dssp             -----------------GGTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence                             025789999996 33   334455555554

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.94  E-value=3.9e-25  Score=232.66  Aligned_cols=289  Identities=14%  Similarity=0.166  Sum_probs=200.3

Q ss_pred             HHHHHHHHHhhhC------C---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEG------A---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~g------a---~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...++++++++++      .   ++++++++|++|+..++.+++++||+|+++.|+|++...    .+...|.++..++.
T Consensus        69 ~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~  144 (422)
T 3fvs_A           69 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP----MTMMAGGRPVFVSL  144 (422)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH----HHHHcCCEEEEEec
Confidence            4566777776654      2   357777777899999999999999999999999998654    34456777776643


Q ss_pred             -----------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEECCCCCCCc--
Q 009523          274 -----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN--  331 (532)
Q Consensus       274 -----------------~dle~Le~al~~~~tklV~lesP~NptG~v~---dl~~I~~la~~~gi~lIvDet~a~~~~--  331 (532)
                                       .|+++|++++++ ++++|++++|+||||.+.   ++++|+++|+++|+++|+|++|+....  
T Consensus       145 ~~~~~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~  223 (422)
T 3fvs_A          145 KPGPIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG  223 (422)
T ss_dssp             BCCCCCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC
Confidence                             378999999987 799999999999999999   488999999999999999999875321  


Q ss_pred             ---ccccc----cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--------
Q 009523          332 ---QKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--------  396 (532)
Q Consensus       332 ---~~~l~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t--------  396 (532)
                         .....    .+.++++.|+||.+|.+| ...|++++++++++.+...........++..++.+...++.        
T Consensus       224 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  302 (422)
T 3fvs_A          224 HQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  302 (422)
T ss_dssp             CCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch
Confidence               11111    245699999999998554 45799999999998887766544555566666665555543        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH------------HH
Q 009523          397 ---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA------------TI  461 (532)
Q Consensus       397 ---l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~------------~~  461 (532)
                         +....++..++++.+.+.|+++ ++. +..|.                .|.++++.++.....            ..
T Consensus       303 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (422)
T 3fvs_A          303 SSYFVQFPQAMQRCRDHMIRSLQSV-GLK-PIIPQ----------------GSYFLITDISDFKRKMPDLPGAVDEPYDR  364 (422)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----------------BSSEEEEECHHHHHHCCCCCCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC----------------eeeEEEEechhhcccccccccccccccHH
Confidence               3445566667888888999876 443 33332                466788877531000            22


Q ss_pred             HHHHH-cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009523          462 KFIDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA  531 (532)
Q Consensus       462 ~~l~~-L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~~  531 (532)
                      .+... ++..++.++.|+.+...  +              .....+++||||++.  ++.++.++.|.+++++
T Consensus       365 ~~~~~ll~~~gv~v~~g~~f~~~--~--------------~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          365 RFVKWMIKNKGLVAIPVSIFYSV--P--------------HQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHCEECEEGGGGSCH--H--------------HHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCEEEeCcHHhcCC--c--------------CCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            34443 33347777777553210  0              001236899999997  2334556666666654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=1.1e-24  Score=223.24  Aligned_cols=282  Identities=11%  Similarity=0.043  Sum_probs=200.4

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          201 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +..+++++++++++|..   ++++++||++|+.+++.++.++ +.+++..+.|. .  .+...++..|++++.++.+   
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~--~~~~~~~~~g~~~~~v~~~~~~  118 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-K--RFYEFAGELGREAYKEEAAFGK  118 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-H--HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-H--HHHHHHHHhCCCeEEEecCCCC
Confidence            55778899999999862   4677788889999999999988 55555555554 2  1223456678888887643   


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC-CCEEEEECCCCCCCcccccccCCcEEEECCccccC
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~-gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lg  351 (532)
                        |+++|+  +++ +|++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+........ +|+++.|+||+++
T Consensus       119 ~~d~~~l~--~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~  194 (362)
T 3ffr_A          119 GFYPADIT--VPA-DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFG  194 (362)
T ss_dssp             CCCGGGCC--CCT-TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTC
T ss_pred             CCCHHHHh--ccC-CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccC
Confidence              788888  555 799999999999999999999999999999 999999999875432111222 8999999999999


Q ss_pred             CCCCcEEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHH-----HHHHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT-----LHLRVQQQN  405 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~~~~---------------------~~G~~~~~~~a~l~l~~l~t-----l~~r~~~~~  405 (532)
                      ++.+  +|+++.+++++++++....                     ....+.+....+.+...++.     +..+.++..
T Consensus       195 ~~~G--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  272 (362)
T 3ffr_A          195 LPAG--LGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE  272 (362)
T ss_dssp             CCSC--CEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCc--eEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            4432  5788888888887765432                     00233344433333333332     355667777


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccccc
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      ++++++.+.|+++|++.. ..|.    +.        ...+.+++|.+++   ....+.+.|...++.++.|...     
T Consensus       273 ~~~~~l~~~L~~~~g~~~-~~~~----~~--------~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~-----  331 (362)
T 3ffr_A          273 EKAALINTYIESSKVFSF-GVED----AK--------LRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGS-----  331 (362)
T ss_dssp             HHHHHHHHHHHHCSSEEE-SSSC----GG--------GBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGG-----
T ss_pred             HHHHHHHHHHHHccCcee-ccCC----hh--------hcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccc-----
Confidence            889999999999877643 2211    11        1135689999975   4566777777668877765210     


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                        ..++.||||++..+.++.++.+.++|++
T Consensus       332 ------------------~~~~~iRis~~~~~~~e~i~~l~~~l~~  359 (362)
T 3ffr_A          332 ------------------KKETQIRIANFPAHSLEQVHKLVQTLKE  359 (362)
T ss_dssp             ------------------GTTTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ------------------cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                              1257999999988777778888887764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.94  E-value=1.4e-24  Score=230.06  Aligned_cols=284  Identities=13%  Similarity=0.112  Sum_probs=198.6

Q ss_pred             chhHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          200 NPTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~g-------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .+...+++++++++++       .++++++++|++|+.+++..++++||+|+++.|+|.+...    .+...|+++..++
T Consensus        95 ~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~  170 (427)
T 3dyd_A           95 SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT----LAESMGIEVKLYN  170 (427)
T ss_dssp             TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred             CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEe
Confidence            4567899999999988       3568888888999999999999999999999999987543    4455688877765


Q ss_pred             C-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----cccccc
Q 009523          273 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL  337 (532)
Q Consensus       273 ~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~  337 (532)
                      .       .|+++|++++++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     ......
T Consensus       171 ~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~  249 (427)
T 3dyd_A          171 LLPEKSWEIDLKQLEYLIDE-KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL  249 (427)
T ss_dssp             EEGGGTTEECHHHHHSSCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred             cccccCCCCCHHHHHHHhcc-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence            3       289999999987 6999999999999999999   99999999999999999999875321     111222


Q ss_pred             CC---cEEEECCccccCCCCCcEEEEEEeC-------hHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHH
Q 009523          338 GA---DLVLHSATKFIGGHNDVLAGSISGS-------GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQ  402 (532)
Q Consensus       338 ga---Divv~S~sK~lgg~gd~~gG~lv~~-------~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~  402 (532)
                      +.   .+++.|+||.++.+|. ..|+++++       +++++.+....... ...++..+..+...++     .+..+.+
T Consensus       250 ~~~~~vi~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~  327 (427)
T 3dyd_A          250 STDVPILSCGGLAKRWLVPGW-RLGWILIHDRRDIFGNEIRDGLVKLSQRI-LGPCTIVQGALKSILCRTPGEFYHNTLS  327 (427)
T ss_dssp             CSSCCEEEEEESTTTSSCGGG-CCEEEEEECSTTSSHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCCCcEEEEeeccccCCCcCc-ceEEEEecCcchhhHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            33   3778999999887764 45777765       35666666544322 3345555555444444     3455666


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-CCCceeecCC
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-KIPYIAPSFG  477 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~~L-~~~~i~vs~G  477 (532)
                      +..++++.+.+.|+++|++. +..|.                .|.++++.++..    ......+++.| +..++.+..|
T Consensus       328 ~~~~~~~~l~~~L~~~~g~~-~~~p~----------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g  390 (427)
T 3dyd_A          328 FLKSNADLCYGALAAIPGLR-PVRPS----------------GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPA  390 (427)
T ss_dssp             HHHHHHHHHHHHHHHSTTEE-EECCS----------------BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEG
T ss_pred             HHHHHHHHHHHHHhcCCCce-ecCCC----------------eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECC
Confidence            67788889999999887764 33332                356778887611    01223444444 2346666665


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                      +.+.                       .++++|||++..  +.++.++.|.++++
T Consensus       391 ~~~~-----------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~  422 (427)
T 3dyd_A          391 TCFE-----------------------YPNFIRVVITVPEVMMLEACSRIQEFCE  422 (427)
T ss_dssp             GGGT-----------------------CTTEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred             cccC-----------------------CCCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4321                       157999999852  23444555555554

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.94  E-value=1.4e-25  Score=232.13  Aligned_cols=281  Identities=13%  Similarity=0.113  Sum_probs=194.8

Q ss_pred             HHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-
Q 009523          204 VVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  274 (532)
Q Consensus       204 ~~Le~~lA~l~g--------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-  274 (532)
                      .+++++++++++        .++++++++|++|+..++.+++++||+|+++.++|++...    .+...|.++..++.+ 
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~  136 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFH----LLSATQREGIFIDATG  136 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHH----HHHHHTCCEEEEECTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHH----HHHHcCCEEEEccCCC
Confidence            456666666654        3578888889999999999999999999999999998654    344568888888765 


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----ccc----ccCCc
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL----SLGAD  340 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~~l----~~gaD  340 (532)
                        |+++|++++++ ++++|++++|+||||.++|   +++|+++|+++|+++|+|++|......     .++    ..+.+
T Consensus       137 ~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  215 (377)
T 3fdb_A          137 GINLHDVEKGFQA-GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC  215 (377)
T ss_dssp             SCCHHHHHHHHHT-TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred             CCCHHHHHHHhcc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence              89999999987 6999999999999999986   567777799999999999997652211     111    12345


Q ss_pred             EEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la~~L  415 (532)
                      +++.|+||.+|.+| ...|+++. ++++++.++..........++..++.+...++.    +..+.++..++++.+.+.|
T Consensus       216 i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  294 (377)
T 3fdb_A          216 ITITAPSKAWNIAG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEI  294 (377)
T ss_dssp             EEEECSTTTTTCGG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChHhccCcc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999997665 34676554 788888887765544455666666655555543    4455566678888888888


Q ss_pred             Hh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          416 EA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       416 ~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      ++ .|++. +..|.                .+.++++.++..   .+....++++   .++.+..|..+...        
T Consensus       295 ~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~---~gi~v~~g~~~~~~--------  346 (377)
T 3fdb_A          295 PKRIPGAK-ITPMQ----------------ATYLMWIDFRDTTIEGSPSEFFIEK---AKVAMNDGAWFGED--------  346 (377)
T ss_dssp             HHHSTTCE-ECCCS----------------BCSEEEEECTTSCCCSCHHHHHHHH---HCEECEEGGGGCGG--------
T ss_pred             HhhCCCce-EecCC----------------eeEEEEEECcccCCCHHHHHHHHHh---CCEEecCChhccCC--------
Confidence            87 66653 22221                244667888642   1223333332   25666666443210        


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                                   .++.+|||++..  +.++.++.|.+++++
T Consensus       347 -------------~~~~~Ris~~~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          347 -------------GTGFCRLNFATSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             -------------GTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred             -------------CCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence                         257999999962  233445555565543

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.94  E-value=7.4e-25  Score=229.46  Aligned_cols=293  Identities=16%  Similarity=0.181  Sum_probs=200.4

Q ss_pred             CCCCch-hHHHHHHHHHhhhC--------C-CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNP-TTVVVEEKMSALEG--------A-ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~g--------a-~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .+|+.+ ...+++++++++++        . ++++++++|++|+..++.+++++||+|+++.+.|++....    +...|
T Consensus        55 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g  130 (410)
T 3e2y_A           55 NQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPM----VRMAG  130 (410)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTT
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH----HHHcC
Confidence            344443 35678888888765        2 4677777778999999999999999999999999986543    34457


Q ss_pred             cEEEEeCC----------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEECCC
Q 009523          266 ITATVIDP----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       266 v~v~~vd~----------------~dle~Le~al~~~~tklV~lesP~NptG~v~---dl~~I~~la~~~gi~lIvDet~  326 (532)
                      .++..++.                .|+++|++++++ ++++|++++|+||||.++   ++++|+++|+++|+++|+|++|
T Consensus       131 ~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~  209 (410)
T 3e2y_A          131 AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVY  209 (410)
T ss_dssp             CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             CEEEEEeccccccccccccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhh
Confidence            77776653                289999999987 799999999999999996   5889999999999999999998


Q ss_pred             CCCCc-----ccccc----cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-
Q 009523          327 ATPLN-----QKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-  396 (532)
Q Consensus       327 a~~~~-----~~~l~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-  396 (532)
                      .....     .....    .+.++++.|+||.+|.+| ...|++++++++++.++..........++..++.+...++. 
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  288 (410)
T 3e2y_A          210 EWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWID  288 (410)
T ss_dssp             TTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence            64321     11111    244599999999998555 46789999999999888766554555666666665555542 


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---H------
Q 009523          397 ----------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---L------  457 (532)
Q Consensus       397 ----------l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~------  457 (532)
                                +....++..++++.+.+.|+++ ++. +..|.                .|.++++.+...   .      
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  350 (410)
T 3e2y_A          289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLK-PIVPD----------------GGYFIIADVSSLGADLSDMNSD  350 (410)
T ss_dssp             HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----------------BSSEEEEECGGGCCCCTTCCSS
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----------------ccEEEEEEchhhhccccccccc
Confidence                      4445556667888888889876 443 33332                456778877531   0      


Q ss_pred             -HHHHHHHHH-cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          458 -TATIKFIDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       458 -~~~~~~l~~-L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                       .....+... ++..++.+..|+.+...  +        ...      ..+++||||++. +.+ .++...++|+
T Consensus       351 ~~~~~~~~~~ll~~~gv~v~~g~~f~~~--~--------~~~------~~~~~iRis~~~-~~e-~l~~~l~~l~  407 (410)
T 3e2y_A          351 EPYDYKFVKWMTKHKKLTAIPVSAFCDS--K--------SKP------HFEKLVRFCFIK-KDS-TLDAAEEIFR  407 (410)
T ss_dssp             CCHHHHHHHHHHHHHSEECEEGGGGSCT--T--------THH------HHTTEEEEECCC-CHH-HHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHcCEEEeCchhhCCC--C--------CCC------CCCCEEEEEEcC-CHH-HHHHHHHHHH
Confidence             011233332 23346777777553210  0        000      025899999998 433 3444444444

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.94  E-value=1.7e-24  Score=225.58  Aligned_cols=275  Identities=16%  Similarity=0.121  Sum_probs=193.0

Q ss_pred             HHHHHHHHHhhh----C-----CC-cEEEeCCHHHHHHHHHHHhccCC-----CEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          203 TVVVEEKMSALE----G-----AE-STVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       203 ~~~Le~~lA~l~----g-----a~-~~i~~sSG~~Ai~~al~all~~G-----d~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      ..++++++++++    |     .+ +++++++|++|+.+++.+++++|     |+|+++.|+|++...    .+...|.+
T Consensus        68 ~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~----~~~~~g~~  143 (396)
T 3jtx_A           68 LPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG----ATLLGGGE  143 (396)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH----HHHHTTCE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH----HHHHcCCE
Confidence            355666666554    5     34 67888888899999999999997     799999999987553    34556888


Q ss_pred             EEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHH---HHHHHHhCCCEEEEECCCCCCCcc-----c
Q 009523          268 ATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATPLNQ-----K  333 (532)
Q Consensus       268 v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~---I~~la~~~gi~lIvDet~a~~~~~-----~  333 (532)
                      +..++.+      |+++|++++++ ++++|++++|+||||.+++.++   |+++|+++|+++|+|++|......     .
T Consensus       144 ~~~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~  222 (396)
T 3jtx_A          144 IHFANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG  222 (396)
T ss_dssp             EEEEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred             EEEeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence            8877642      78899998887 7999999999999999998655   888999999999999998753221     1


Q ss_pred             cc--------ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHH
Q 009523          334 AL--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQ  402 (532)
Q Consensus       334 ~l--------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~  402 (532)
                      ..        ..+.++++.|+||.++.+| ...|++++++++++.++......+...++..++.+...++   .+....+
T Consensus       223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  301 (396)
T 3jtx_A          223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRR  301 (396)
T ss_dssp             HHHHHHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHhhhhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            11        2567899999999887665 4578999999999998877666666677776666655553   3444555


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCES  481 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~s  481 (532)
                      +..++.+.+.+.|+++..   +..|                ..|.++++.++.  .....+.+.| +..++.++.|..+.
T Consensus       302 ~~~~~~~~l~~~l~~~~~---~~~~----------------~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~  360 (396)
T 3jtx_A          302 LYQEKFERVIPILQQVFD---VKLP----------------DASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLA  360 (396)
T ss_dssp             HHHHHHHHHHHHHTTTSC---CCCC----------------SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred             HHHHHHHHHHHHHHhcCC---ccCC----------------CeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhC
Confidence            566677777777776421   1111                136688999874  1233444444 33477777776543


Q ss_pred             ccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009523          482 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED  520 (532)
Q Consensus       482 l~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~d  520 (532)
                      .-..               ..+...+.||||++. +.++
T Consensus       361 ~~~~---------------~~~~~~~~iRis~~~-~~~~  383 (396)
T 3jtx_A          361 RDTE---------------QGNPGEGYVRIALVA-DVAT  383 (396)
T ss_dssp             CCCT---------------TCCTTTTEEEEECCS-CHHH
T ss_pred             Cccc---------------ccCCCCCeEEEEEcC-CHHH
Confidence            2100               001236899999997 4443

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=1.2e-24  Score=221.55  Aligned_cols=276  Identities=16%  Similarity=0.148  Sum_probs=194.4

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +.+|+++...+|++++|+++|.+  +.++++++++++.+++..+  +||+|+++.|+|.+..    ..++..|+++..++
T Consensus        45 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~  118 (337)
T 3p1t_A           45 INRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIG  118 (337)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHH----HHHTTSCCEEEEEC
T ss_pred             hccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHH----HHHHHcCCEEEEec
Confidence            45667889999999999999974  4555555558999988887  9999999999999854    34566799988887


Q ss_pred             CC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc---cccccCCcEEEE
Q 009523          273 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALSLGADLVLH  344 (532)
Q Consensus       273 ~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~---~~l~~gaDivv~  344 (532)
                      .+     |+++|+++  . ++++|++++|+||||.++|++++.++|+++++ +|+|++|......   .....+.++++.
T Consensus       119 ~~~~~~~d~~~l~~~--~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~  194 (337)
T 3p1t_A          119 LTDDLLLDPNDLAQV--S-RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFR  194 (337)
T ss_dssp             BCTTSSBCHHHHTTC--C-TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEE
T ss_pred             CCCCCCCCHHHHHhh--c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEe
Confidence            43     78888876  2 58999999999999999999999999999997 5669998743211   112235689999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKV  421 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---~tl~~r~~~~~~~a~~la~~L~~~p~v  421 (532)
                      |+||.+|.+| ...|++++++++++.++......  ..++.....+...+   +.+..++++..++++++.+.|+++ ++
T Consensus       195 S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  270 (337)
T 3p1t_A          195 SFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFC--NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GY  270 (337)
T ss_dssp             ESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTT--CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             eCchhccCcc-hheEEEEeCHHHHHHHHhhcCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cC
Confidence            9999998555 35789999999998887654332  33444443333333   345566667777888888888876 33


Q ss_pred             eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHh
Q 009523          422 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK  501 (532)
Q Consensus       422 ~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~  501 (532)
                      . + +|                ..|+++++.++.. +.   +.+.|...++.++.|..+.                    
T Consensus       271 ~-~-~~----------------~~~~~~~~~~~~~-~~---~~~~l~~~gi~v~~g~~~~--------------------  308 (337)
T 3p1t_A          271 R-V-AS----------------SEANFVLVENAAG-ER---TLRFLRERGIQVKDAGQFG--------------------  308 (337)
T ss_dssp             C-B-CC----------------CSSSEEEEECTTT-HH---HHHHHHHTTEECEEGGGGT--------------------
T ss_pred             E-E-CC----------------CCCeEEEEEcCCH-HH---HHHHHHHCCeEEEECccCC--------------------
Confidence            2 1 11                1356888887643 22   3334444577777664421                    


Q ss_pred             cCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 009523          502 YGIMDNLVRFSFGV-EDFEDLKADVLQAL  529 (532)
Q Consensus       502 ~gi~~~~IRlSvG~-ed~~dli~dL~~AL  529 (532)
                        . ++.+|||++. ++.+.+++.|++.+
T Consensus       309 --~-~~~iRis~~~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          309 --L-HHHIRISIGREEDNDRLLAALAEYS  334 (337)
T ss_dssp             --C-CSEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             --C-CCeEEEecCCHHHHHHHHHHHHHHh
Confidence              1 4799999995 34455555555443

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.94  E-value=9.5e-25  Score=227.03  Aligned_cols=288  Identities=10%  Similarity=0.024  Sum_probs=196.9

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      +...++++++++++|.+  .++++++|++|+.+++.+++++||+|++++++|++..  +...++..|.++..++.     
T Consensus        42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  119 (392)
T 2z9v_A           42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEA  119 (392)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCC
Confidence            45788999999999974  5677788889999999999999999999999998763  22344556878777764     


Q ss_pred             CCHHHHHHhhcC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCccccC
Q 009523          274 ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       274 ~dle~Le~al~~-~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~sK~lg  351 (532)
                      .|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|+||+++
T Consensus       120 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~  199 (392)
T 2z9v_A          120 IDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLG  199 (392)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTC
T ss_pred             CCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCccccc
Confidence            379999999942 2689999999999999999999999999999999999999875422 23334578999999999766


Q ss_pred             CCCCcEEEEEEeChHHHHHHHHHh--------------------hhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNS  406 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~~~--------------------~~~G~~~~~~~a~l~l~~l~t-----l~~r~~~~~~  406 (532)
                      ++.+  .|++++++++++.++...                    ....++.+......+...++.     +....++..+
T Consensus       200 ~~~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  277 (392)
T 2z9v_A          200 APPG--LTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHAL  277 (392)
T ss_dssp             CCSC--CEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCc--eeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            5432  389999998888776421                    011223344433333333332     3344556667


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCccccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~sl~~~  485 (532)
                      +++++.+.|++. ++. +..|.    +.        ...+++++|.++.+ .....+.+.|... ++.+..|...     
T Consensus       278 ~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gi~v~~g~~~-----  337 (392)
T 2z9v_A          278 TAKAMRAGVTAM-GLS-VWAAS----DS--------IASPTTTAVRTPDG-VDEKALRQAARARYGVVFSSGRGE-----  337 (392)
T ss_dssp             HHHHHHHHHHHT-TCC-BSSSS----GG--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGG-----
T ss_pred             HHHHHHHHHHHc-CCe-eccCC----cc--------ccCCceEEEECCCC-CCHHHHHHHHHhcCCEEEecCCCC-----
Confidence            788888888775 432 21111    00        11467889998632 1234555555443 6666655320     


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEE-ec-C---CCHHHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFS-FG-V---EDFEDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlS-vG-~---ed~~dli~dL~~AL~  530 (532)
                                        ..++.+||| ++ .   ++.+.+++.|.++++
T Consensus       338 ------------------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~  369 (392)
T 2z9v_A          338 ------------------TLGKLTRIGHMGPTAQPIYAIAALTALGGAMN  369 (392)
T ss_dssp             ------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCCeEEEeCcccccCHHHHHHHHHHHHHHHH
Confidence                              025789999 46 2   344555666666654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.93  E-value=4.4e-24  Score=222.17  Aligned_cols=284  Identities=14%  Similarity=0.103  Sum_probs=196.7

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..++++++++++    |.    + +++++++|++|+..++.+++++||+|+++.+.|++...    .++..|.++..++.
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~~  144 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP----AIALSGGIVKRMAL  144 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH----HHHHcCCEEEEeec
Confidence            567777777774    52    4 68888888899999999999999999999999998654    34556888777754


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-------cccc--
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--  335 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-------~~~l--  335 (532)
                            .|+++|++++++ ++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|.....       ...+  
T Consensus       145 ~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  223 (386)
T 1u08_A          145 QPPHFRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ  223 (386)
T ss_dssp             CTTTCCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH
T ss_pred             CcccCcCCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC
Confidence                  479999999976 7999999999999999986   68899999999999999999865221       1112  


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  411 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~l  411 (532)
                      ..+.|+++.|+||+++++| ...|++++++++++.++..........++..+..+...++.    +....++..++++.+
T Consensus       224 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  302 (386)
T 1u08_A          224 LRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL  302 (386)
T ss_dssp             HHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred             ccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            3478999999999998655 45789999999998887765444444455555555555543    333344555667777


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcC-CCceeecCCCcccccccCccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALK-IPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      .+.|+++ ++. +..|.                .|.++++.+++.. .....+.+.|. ..++.+..|..+..  .+   
T Consensus       303 ~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~---  359 (386)
T 1u08_A          303 VNALNES-RLE-ILPCE----------------GTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA--DP---  359 (386)
T ss_dssp             HHHTTSS-SCE-ECCCC----------------BSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS--SC---
T ss_pred             HHHHHHC-CCe-ecCCC----------------ceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC--CC---
Confidence            7777765 332 22221                3568899987420 12344555442 34676666543210  00   


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                    ..++.+|||++. + ++.++.+.+.|.+
T Consensus       360 --------------~~~~~iRis~~~-~-~~~i~~~~~~l~~  385 (386)
T 1u08_A          360 --------------FPHKLIRLCFAK-K-ESTLLAAAERLRQ  385 (386)
T ss_dssp             --------------CCSCEEEEECCS-C-HHHHHHHHHHHTT
T ss_pred             --------------CCCCEEEEEEcC-C-HHHHHHHHHHHhh
Confidence                          135789999995 3 4445555555543

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.93  E-value=1.9e-24  Score=231.00  Aligned_cols=286  Identities=15%  Similarity=0.113  Sum_probs=199.9

Q ss_pred             hHHHHHHHHHhhh----CC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          202 TTVVVEEKMSALE----GA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga---~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ...+|+++|++++    |.   ++++++++|++|+..++.+++++||+|+++.|+|.+....    +...|.++..++. 
T Consensus       119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~  194 (448)
T 3aow_A          119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQA----FNFYEPQYIQIPLD  194 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTCCEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEeccC
Confidence            4678888888888    75   4567777778999999999999999999999999986543    4456787777754 


Q ss_pred             ---CCHHHHHHhhc----C-CCeeEEE-EeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----ccccc
Q 009523          274 ---ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS  336 (532)
Q Consensus       274 ---~dle~Le~al~----~-~~tklV~-lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~  336 (532)
                         .|+++|+++++    + .++++|+ +++|+||||.+++   +++|.++|+++|+++|+|++|.....     .....
T Consensus       195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~  274 (448)
T 3aow_A          195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA  274 (448)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGG
T ss_pred             CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHh
Confidence               37999999987    4 2699985 6899999999998   46899999999999999999875321     11112


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNST  407 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~  407 (532)
                         .+.++++.|+||.++ +| ...|++++++++++.+...........++..++++...++.      +....++..++
T Consensus       275 ~~~~~~vi~~~S~SK~~~-~G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  352 (448)
T 3aow_A          275 LDNEGRVIYLGTFSKILA-PG-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPR  352 (448)
T ss_dssp             GCTTSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEccchhhcc-cc-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               256799999999998 44 56899999999999887655443333456655555444442      33333444467


Q ss_pred             HHHHHHHHHh-CC-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccccc
Q 009523          408 ALRMAKILEA-HP-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       408 a~~la~~L~~-~p-~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      ++.+.+.|++ .| ++. +..|.                .|.++|++++.+ .....+.+.|...++.+..|..+..   
T Consensus       353 ~~~l~~~L~~~~~~g~~-~~~p~----------------~g~~~~v~~~~~-~~~~~l~~~l~~~gV~v~pg~~f~~---  411 (448)
T 3aow_A          353 RDAMLEALEEFMPEGVK-WTKPE----------------GGMFIWVTLPDG-IDSKKMLERAIKKGVAYVPGEAFYA---  411 (448)
T ss_dssp             HHHHHHHHHHHCCTTCE-ECCCS----------------BSSEEEEECSTT-CCHHHHHHHHHHTTEECEEGGGGST---
T ss_pred             HHHHHHHHHHhCCCCeE-EeCCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCcEEEcchhhcC---
Confidence            7788888876 35 343 32232                467889999742 1234555555444777776654321   


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e---d~~dli~dL~~AL~  530 (532)
                       .               +..++++|||++..   +.++.++.|.++++
T Consensus       412 -~---------------~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~  443 (448)
T 3aow_A          412 -H---------------RDVKNTMRLNFTYVDEDKIMEGIKRLAETIK  443 (448)
T ss_dssp             -T---------------CCCCSEEEEECSSSCTHHHHHHHHHHHHHHH
T ss_pred             -C---------------CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence             0               11357999999863   45566666666664

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.93  E-value=4.7e-25  Score=230.54  Aligned_cols=287  Identities=11%  Similarity=0.063  Sum_probs=198.7

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          201 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +..+++++++++++|.+  + .++++||++|+..++.+++++||+|+++.++|++..  +...++..|++++.++.+   
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  123 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence            45688999999999974  2 456678899999999999999999999999998742  234556678888888754   


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCccccC
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~lg  351 (532)
                        |+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. ..+....++|+++.|+||+++
T Consensus       124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~  203 (411)
T 3nnk_A          124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG  203 (411)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred             CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence              89999999975369999999999999999999999999999999999999976542 234445689999999999865


Q ss_pred             CCCCcEEEEEEeChHHHHHHHHHh------------------------------------hhcCCCccHHHHHHHHHhHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIRNLH------------------------------------HVLGGALNPNAAYLIIRGMK  395 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~~~------------------------------------~~~G~~~~~~~a~l~l~~l~  395 (532)
                      ++.  ..|+++.++++++.++...                                    ....++.+......+...++
T Consensus       204 ~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  281 (411)
T 3nnk_A          204 GPS--GTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR  281 (411)
T ss_dssp             CCS--SEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH
T ss_pred             CCC--ceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH
Confidence            543  2689999999988876532                                    00112334443333333333


Q ss_pred             H-----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-
Q 009523          396 T-----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-  469 (532)
Q Consensus       396 t-----l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-  469 (532)
                      .     +....++..++++++.+.|++. ++. +..|     +.        ...+.+++|.++.+ .....+.+.|.. 
T Consensus       282 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-----~~--------~~~~~~~~~~~~~~-~~~~~l~~~l~~~  345 (411)
T 3nnk_A          282 LILQEGLDYGIARHKLHGDALVKGIQAM-GLE-TFGD-----LK--------HKMNNVLGVVIPQG-INGDQARKLMLED  345 (411)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BCSC-----GG--------GBCSSEEEEECCTT-CCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE-eCCC-----cc--------cccccEEEEECCCC-CCHHHHHHHHHHh
Confidence            2     3445556667788888888875 322 1111     00        12467899998632 123344444432 


Q ss_pred             CceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cCCC----HHHHHHHHHHHHh
Q 009523          470 PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVED----FEDLKADVLQALH  530 (532)
Q Consensus       470 ~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~ed----~~dli~dL~~AL~  530 (532)
                      .++.+..|..                       ...++.|||++ +..+    .+++++.|+++++
T Consensus       346 ~gi~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~  388 (411)
T 3nnk_A          346 FGIEIGTSFG-----------------------PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLN  388 (411)
T ss_dssp             HSEEEEECCG-----------------------GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             cCeEEeCccC-----------------------CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHH
Confidence            2666655411                       01357999998 7543    4555566666554

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.93  E-value=5.1e-25  Score=229.88  Aligned_cols=205  Identities=21%  Similarity=0.198  Sum_probs=167.3

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          203 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       203 ~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+.+++.+++++|.   +++++++||++|+..++.++  +||+|+++.+.|+++...+. .++..|+++..+  .|+++|
T Consensus        60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l  134 (374)
T 2aeu_A           60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEI  134 (374)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHH
T ss_pred             HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHH
Confidence            35667777788898   67899999999999999987  99999999999988766554 556779998888  689999


Q ss_pred             HHhhcCCCeeE-EEEeCCCCCCC-cccCHHHHHHHHHhCCCEEEEECCCCCCC--c-cc--ccccCCcEEEECCccccCC
Q 009523          280 EAALNNNNVSL-FFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGTFATPL--N-QK--ALSLGADLVLHSATKFIGG  352 (532)
Q Consensus       280 e~al~~~~tkl-V~lesP~NptG-~v~dl~~I~~la~~~gi~lIvDet~a~~~--~-~~--~l~~gaDivv~S~sK~lgg  352 (532)
                      +++ ++ ++++ |++++|+|||| ...++++|.++|+++|+++|+|++++..+  . ..  +...++|+++.|+||+++|
T Consensus       135 ~~~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g  212 (374)
T 2aeu_A          135 LNK-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  212 (374)
T ss_dssp             HTT-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             Hhc-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence            988 65 7999 99999999999 88899999999999999999999976543  1 11  4556889999999999987


Q ss_pred             CCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH-HHHHHHHHHHHH----HHHHHh
Q 009523          353 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRM----AKILEA  417 (532)
Q Consensus       353 ~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~-r~~~~~~~a~~l----a~~L~~  417 (532)
                      .   .+|++++++++++.++.....++...++..++++..+++.+.. +++++.++++.+    .+.|.+
T Consensus       213 ~---~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~  279 (374)
T 2aeu_A          213 P---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK  279 (374)
T ss_dssp             C---SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             c---ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   4799999999999988877667777788888887888876544 566777777666    455544

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.93  E-value=7.9e-25  Score=228.53  Aligned_cols=279  Identities=14%  Similarity=0.125  Sum_probs=191.4

Q ss_pred             hHHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~----g----a~~~i~~sSG~~Ai~~al~all~~G-d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+|++++++++    |    .++++++++|++|+..++.+++++| |+|+++.|.|++...    .++..|.++..++
T Consensus        77 g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~----~~~~~g~~~~~v~  152 (398)
T 3ele_A           77 GDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKV----FVNAAGARLVEVP  152 (398)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH----HHHHTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH----HHHHcCCEEEEEe
Confidence            3456666666654    3    2567788888899999999999999 999999999998653    3455688888887


Q ss_pred             CC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHh------CCCEEEEECCCCCCCc------
Q 009523          273 PA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLN------  331 (532)
Q Consensus       273 ~~------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~------~gi~lIvDet~a~~~~------  331 (532)
                      .+      |+++|++++++ ++++|++++|+||||.+.+   +++|+++|++      +|+++|+|++|+....      
T Consensus       153 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~  231 (398)
T 3ele_A          153 ADTEHFQIDFDALEERINA-HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP  231 (398)
T ss_dssp             CCTTTSSCCHHHHHHTCCT-TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC
T ss_pred             cCCcCCcCCHHHHHHHhCc-CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC
Confidence            54      89999999987 7999999999999999998   6677788998      9999999999875321      


Q ss_pred             ccccccCCcEEEECCccccCCCCCcEEEEEEeChHH------HHHHHHHhhhcC-CCccHHHHHHHHHhHHHHHHHHHHH
Q 009523          332 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------VTQIRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQ  404 (532)
Q Consensus       332 ~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l------i~~l~~~~~~~G-~~~~~~~a~l~l~~l~tl~~r~~~~  404 (532)
                      ......+.++++.|+||.+|.+| ...|++++++++      .+.+.......+ ...++..++.+...++... ..++.
T Consensus       232 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~  309 (398)
T 3ele_A          232 FVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAY  309 (398)
T ss_dssp             CGGGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHH
T ss_pred             ChHhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHH
Confidence            11122356799999999998555 457888888763      333333333322 2344455554444443221 23455


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccc
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVD  484 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~  484 (532)
                      .++++.+.+.|++. ++. +..|.                .|.++++.+++.  ....+.+.|...++.+..|..+.   
T Consensus       310 ~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~---  366 (398)
T 3ele_A          310 KENRDLLYEGLTRI-GYH-CFKPD----------------GAFYMFVKALED--DSNAFCEKAKEEDVLIVAADGFG---  366 (398)
T ss_dssp             HHHHHHHHHHHHHH-TCC-EECCS----------------BSSEEEEECSSS--CHHHHHHHHHTTTEECEESGGGT---
T ss_pred             HHHHHHHHHHHHHc-CCe-ecCCC----------------eeEEEEEEcCCC--CHHHHHHHHHHCCEEEeCccccC---
Confidence            67777888888765 332 22221                244588988753  34566666766788887765431   


Q ss_pred             cCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          485 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       485 ~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                                          .++.+|||++.  |+.++.++.|.++++
T Consensus       367 --------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~  394 (398)
T 3ele_A          367 --------------------CPGWVRISYCVDREMIKHSMPAFEKIYK  394 (398)
T ss_dssp             --------------------CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             --------------------CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                                14689999985  233445566666654

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.93  E-value=1.5e-24  Score=224.77  Aligned_cols=278  Identities=15%  Similarity=0.125  Sum_probs=195.9

Q ss_pred             CCCchhHHHHHHHHHhh------hCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          197 RYGNPTTVVVEEKMSAL------EGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l------~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      +|+++...+++++++++      .+.  ++.+++++|++++..++.+++++||+|+++.++|++...    .+...|.++
T Consensus        65 ~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~----~~~~~g~~~  140 (369)
T 3cq5_A           65 RYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPI----LAKGTHTEF  140 (369)
T ss_dssp             SCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHH----HHHHTTCEE
T ss_pred             cCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCEE
Confidence            44444446899999998      443  345556666699999999999999999999999987653    345568887


Q ss_pred             EEeCC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-cccc----ccC
Q 009523          269 TVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL----SLG  338 (532)
Q Consensus       269 ~~vd~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l----~~g  338 (532)
                      ..++.     .|+++|++++++.++++|++++|+||||.+.|++++.++++.+++++|+|++|+.+.. ....    ..+
T Consensus       141 ~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  220 (369)
T 3cq5_A          141 IAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYP  220 (369)
T ss_dssp             EEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCT
T ss_pred             EEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCC
Confidence            77753     3789999998753589999999999999999999999999999999999999865432 1112    235


Q ss_pred             -CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Q 009523          339 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       339 -aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~~  414 (532)
                       .++++.|+||+++.+| ...|++++++++++.++.....++  .++..++.+...++   .+..+.++..++++++.+.
T Consensus       221 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  297 (369)
T 3cq5_A          221 TKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVMLVRLPYH--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAAR  297 (369)
T ss_dssp             TTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHHTTSCTTC--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHHHcCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence             6799999999998555 457899999998888876544333  56666655555554   3444555666778888888


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      |++. ++..+  |.                .|+++++.++.+   ...+.+.|...++.+..|+                
T Consensus       298 L~~~-g~~~~--~~----------------~~~~~~~~~~~~---~~~l~~~l~~~gi~v~~~~----------------  339 (369)
T 3cq5_A          298 LEEL-GYAVV--PS----------------ESNFVFFGDFSD---QHAAWQAFLDRGVLIRDVG----------------  339 (369)
T ss_dssp             HHHH-TCEEE--CC----------------SSSEEEEECCSS---HHHHHHHHHHTTEECBCCS----------------
T ss_pred             HHhC-CCEEC--CC----------------CCeEEEEECCCC---HHHHHHHHHHCCEEEEECC----------------
Confidence            8763 44322  21                356888888622   3445555554566665541                


Q ss_pred             CHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHH
Q 009523          495 SQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQAL  529 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG~e-d~~dli~dL~~AL  529 (532)
                                .++.+|||++.+ +.+.+++.|.+++
T Consensus       340 ----------~~~~iRis~~~~~~i~~~~~~l~~~~  365 (369)
T 3cq5_A          340 ----------IAGHLRTTIGVPEENDAFLDAAAEII  365 (369)
T ss_dssp             ----------CTTEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             ----------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence                      146899999932 2344555555544

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.93  E-value=5.4e-25  Score=226.41  Aligned_cols=285  Identities=15%  Similarity=0.101  Sum_probs=199.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCE--EEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~--VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .++...+|++++++++|.+..++++||++|+..++++++.+||+  |+++.+.|....... ......|.++..++..  
T Consensus        46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~  124 (359)
T 3pj0_A           46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGTANQ  124 (359)
T ss_dssp             BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSCTTS
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHHHhcCceEEecCCcCC
Confidence            46889999999999999988899999999999999999999987  555555443221100 0112348888887753  


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCC-CcccCHHHH---HHHHHhCCCEEEEECCCCCCC------cccccccCCcEE
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKLV---SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLV  342 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~Npt-G~v~dl~~I---~~la~~~gi~lIvDet~a~~~------~~~~l~~gaDiv  342 (532)
                        |+++|+++ .+ ++++|++++|+||+ |.+.|.+++   .++|++||+++|+|+++....      ....+..+.|++
T Consensus       125 ~~d~~~l~~~-~~-~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~  202 (359)
T 3pj0_A          125 LLTIDDIKSL-RE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSV  202 (359)
T ss_dssp             CCCHHHHHTC-SS-CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEE
T ss_pred             CcCHHHHHhc-cC-CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEE
Confidence              79999988 55 79999999999998 798886655   999999999999999865321      122233578999


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~--~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +.|+||+++++.   +|++++++++++.++......+...  ....+..+...++....++++..++++++.+.|+++|+
T Consensus       203 ~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g  279 (359)
T 3pj0_A          203 YVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSG  279 (359)
T ss_dssp             EEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTT
T ss_pred             EEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Confidence            999999998774   5889999999999887655444322  22222223345555556677777889999999999877


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      +.....|.                .++++++.++... .....+.+.|...++.+..|..+..   +             
T Consensus       280 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~-------------  327 (359)
T 3pj0_A          280 VKTVPEVP----------------VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---A-------------  327 (359)
T ss_dssp             EEEESSSC----------------SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---T-------------
T ss_pred             ceeeccCC----------------cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---C-------------
Confidence            64332332                3567888886432 3355666667666777777643210   1             


Q ss_pred             HhcCCCCCeEEEEecCC----CHHHHHHHHH
Q 009523          500 LKYGIMDNLVRFSFGVE----DFEDLKADVL  526 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~e----d~~dli~dL~  526 (532)
                           ..+++|++++..    +.+++.+.++
T Consensus       328 -----~~~~~r~~i~~~~~~~~~e~l~~~l~  353 (359)
T 3pj0_A          328 -----DVCAFEVSVGDAFAEIPAKNLELVFR  353 (359)
T ss_dssp             -----TEEEEEEECCTTGGGSCHHHHHHHHH
T ss_pred             -----CceEEEEEecCccccCCHHHHHHHHH
Confidence                 246899999854    3444444443

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.93  E-value=7.3e-25  Score=229.14  Aligned_cols=287  Identities=15%  Similarity=0.125  Sum_probs=199.4

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----C
Q 009523          201 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----~  274 (532)
                      +...+|++++++++|.  ++++++++|++|+..++.+++++||+|+++.++|++....    ++..|.++..++.    .
T Consensus        74 ~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~  149 (397)
T 2zyj_A           74 EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQA----FRLQGPRFLTVPAGEEGP  149 (397)
T ss_dssp             TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTCCEEEEEEEETTEE
T ss_pred             CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEecCcCCCCC
Confidence            3568899999999986  3566666667999999999999999999999999986543    4456777777654    3


Q ss_pred             CHHHHHHhhcCCCeeEEE-EeCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCc-----cccccc------CC
Q 009523          275 DMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-----QKALSL------GA  339 (532)
Q Consensus       275 dle~Le~al~~~~tklV~-lesP~NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~------ga  339 (532)
                      |+++|++++++.++++|+ +++|+||||.+.|.+   +|+++|+++|+++|+|++|.....     .....+      +.
T Consensus       150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (397)
T 2zyj_A          150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG  229 (397)
T ss_dssp             CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred             CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence            799999998753588885 689999999999855   899999999999999999876421     111222      34


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~la~~  414 (532)
                      ++++.|+||+++ +| ...|++++++++++.++..........++..++.+...++     .+....++..++++.+.+.
T Consensus       230 ~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  307 (397)
T 2zyj_A          230 VIYLGSFSKVLS-PG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA  307 (397)
T ss_dssp             EEEEEESTTTTC-GG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccccc-cc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999 43 4679999999998888765543322335665555554443     2333444555777788888


Q ss_pred             HHh-CC-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccccc
Q 009523          415 LEA-HP-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW  492 (532)
Q Consensus       415 L~~-~p-~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~  492 (532)
                      |++ .| ++. +..|.                .|.+++++++.+ .....+.+.|...++.+..|..+..    .     
T Consensus       308 L~~~~~~g~~-~~~~~----------------~g~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~----~-----  360 (397)
T 2zyj_A          308 LDREVPKEVR-YTRPK----------------GGMFVWMELPKG-LSAEGLFRRALEENVAFVPGGPFFA----N-----  360 (397)
T ss_dssp             HHHHSCTTSE-ECCCS----------------BSSEEEEECSTT-CCHHHHHHHHHHTTEEEEESGGGCT----T-----
T ss_pred             HHHHCCCCeE-EccCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCCEEechHHhcC----C-----
Confidence            876 35 343 22232                467889998742 1234555555545777776644220    0     


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009523          493 DLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH  530 (532)
Q Consensus       493 ~~~~~~~~~~gi~~~~IRlSvG~e---d~~dli~dL~~AL~  530 (532)
                                +..++.+|||++..   +.++.++.|.++++
T Consensus       361 ----------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  391 (397)
T 2zyj_A          361 ----------GGGENTLRLSYATLDREGIAEGVRRLGRALK  391 (397)
T ss_dssp             ----------SCCTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence                      11357999999975   34455666666654

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=1.2e-24  Score=225.43  Aligned_cols=277  Identities=13%  Similarity=0.062  Sum_probs=191.4

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccC-------------CCEEEEcCCCCcchHHHHHHhcccC
Q 009523          200 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~-------------Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      ....+++++.+++++|.+  +.+++++|++|+..++.++..+             ||+|+++.+.|+++...    ++..
T Consensus        68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~  143 (397)
T 3f9t_A           68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKG----REMM  143 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHH----HHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHH----HHHc
Confidence            445667899999999874  4588889999999999998776             99999999999986543    3445


Q ss_pred             CcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC---------
Q 009523          265 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL---------  330 (532)
Q Consensus       265 Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~---------  330 (532)
                      |++++.++.+     |+++|++++++.++++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.         
T Consensus       144 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~  223 (397)
T 3f9t_A          144 DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK  223 (397)
T ss_dssp             TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred             CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence            8888888765     89999999976358999999999999999999999999999999999999986421         


Q ss_pred             ------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhc---------CCC--ccHHHHHHHHHh
Q 009523          331 ------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL---------GGA--LNPNAAYLIIRG  393 (532)
Q Consensus       331 ------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~---------G~~--~~~~~a~l~l~~  393 (532)
                            ...... ++|+++.|+||+++++.. +|++++.++.+.+.++......         +..  .+...++.++..
T Consensus       224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  301 (397)
T 3f9t_A          224 KKGVNYKFDFSL-GVDSITIDPHKMGHCPIP-SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY  301 (397)
T ss_dssp             CTTCCCCCSGGG-TCSEEECCTTTTTCCCSS-CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred             cccccccccccc-cCCeEEEccccccCCCCC-ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence                  112223 889999999999966542 3444444555554443211111         111  133444444433


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009523          394 M--KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY  471 (532)
Q Consensus       394 l--~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~  471 (532)
                      +  ..+..++++..++++++.+.|+++ ++..+ .|                ..+++++|.++.    ...+.+.|...+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~~----~~~~~~~l~~~g  359 (397)
T 3f9t_A          302 LGREGQRKIVNECMENTLYLYKKLKEN-NFKPV-IE----------------PILNIVAIEDED----YKEVCKKLRDRG  359 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SC----------------CSSSEEEEECTT----HHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-cC----------------CCccEEEEEeCC----HHHHHHHHHhCC
Confidence            3  344556677778889999999886 43222 12                135688888764    234444444445


Q ss_pred             eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       472 i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      +.+..|.                          .++.|||+++...+++.++.+.++|+
T Consensus       360 i~v~~~~--------------------------~~~~~Ri~~~~~~~~e~i~~~~~~l~  392 (397)
T 3f9t_A          360 IYVSVCN--------------------------CVKALRIVVMPHIKREHIDNFIEILN  392 (397)
T ss_dssp             CBCEECS--------------------------SSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             eEEeccC--------------------------CCCEEEEEEcCCCCHHHHHHHHHHHH
Confidence            5554432                          14789999997555555555555544

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.93  E-value=6.9e-25  Score=228.38  Aligned_cols=259  Identities=14%  Similarity=0.117  Sum_probs=185.9

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          200 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      .+..+++++.+++++|.+   ++++++||++|+..++.+++++||+|++++++|++.  .+...++..|.++..++.   
T Consensus        66 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~  143 (393)
T 1vjo_A           66 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWG  143 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCC
Confidence            467788999999999974   466777888999999999999999999999999872  122345567888888763   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~l  350 (532)
                        .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. .......++|+++.|+||++
T Consensus       144 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l  223 (393)
T 1vjo_A          144 EVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGL  223 (393)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccc
Confidence              589999999875248999999999999999999999999999999999999987332 12223457899999999999


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHH----h----------------hhcCCCccHHHHHHHHHhHHHH-----HHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNL----H----------------HVLGGALNPNAAYLIIRGMKTL-----HLRVQQQN  405 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~----~----------------~~~G~~~~~~~a~l~l~~l~tl-----~~r~~~~~  405 (532)
                      ++++  ..|++++++++++.++..    .                ...+++.++...+.+...++.+     ....++..
T Consensus       224 ~~~~--~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  301 (393)
T 1vjo_A          224 GCSP--GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQ  301 (393)
T ss_dssp             CSCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cCCC--ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            8776  358999999888877431    0                1111145565555555555443     34455666


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCC
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGG  478 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~  478 (532)
                      ++++++.+.|++. ++. +..|.     .+        ..+++++|.++.+ .....+.+.|... ++.+..|.
T Consensus       302 ~~~~~l~~~L~~~-g~~-~~~~~-----~~--------~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~  359 (393)
T 1vjo_A          302 KNVEYLWERLEDI-GLS-LHVEK-----EY--------RLPTLTTVCIPDG-VDGKAVARRLLNEHNIEVGGGL  359 (393)
T ss_dssp             HHHHHHHHHHHHT-TCC-BSSCG-----GG--------BCSSEEEEECCTT-CCHHHHHHHHHHHHCEECEECC
T ss_pred             HHHHHHHHHHHHc-CCc-ccCCc-----cc--------cCCcEEEEEcCCC-CCHHHHHHHHHhhCCEEEecCc
Confidence            7888888888875 432 21110     10        1457889988632 2234566666544 67776664

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.93  E-value=4.2e-24  Score=223.44  Aligned_cols=282  Identities=16%  Similarity=0.083  Sum_probs=199.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCH
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  276 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dl  276 (532)
                      ..+...+++++||+++|.++.+++++|++++..++..+.  .+||+|+++.+.|+++...    ++..|+++..++.+|+
T Consensus        89 ~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~d~  164 (401)
T 2bwn_A           89 TTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHNDV  164 (401)
T ss_dssp             CBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTTCH
T ss_pred             ChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHH----HHHcCCeEEEEcCCCH
Confidence            346789999999999999889999999998777776654  5899999999999886643    3456889999998899


Q ss_pred             HHHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc------c-cccc--cCCcEEEE
Q 009523          277 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------Q-KALS--LGADLVLH  344 (532)
Q Consensus       277 e~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~------~-~~l~--~gaDivv~  344 (532)
                      ++|+++++.   .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+..      . ....  ...|+++.
T Consensus       165 ~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~  244 (401)
T 2bwn_A          165 AHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNG  244 (401)
T ss_dssp             HHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEE
T ss_pred             HHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEe
Confidence            999998861   2689999999999999999999999999999999999999874321      0 0111  13589999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl-----~~r~~~~~~~a~~la~~L~~  417 (532)
                      |++|.++++    ||++++++++++.++....  .+....++..++.+...++.+     ....++..++++++.+.|++
T Consensus       245 s~sK~~~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  320 (401)
T 2bwn_A          245 TLAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA  320 (401)
T ss_dssp             ESSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             echhhccCC----CCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999965    4899999888887765322  222223445444444455433     34455666778888888876


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCccccccCCCH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQ  496 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~  496 (532)
                      . ++. +..|                 .+++++|.++. ......+.+.|. ..++.+..+...                
T Consensus       321 ~-g~~-~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~L~~~~gi~v~~~~~~----------------  364 (401)
T 2bwn_A          321 L-GMP-IIDH-----------------GSHIVPVVIGD-PVHTKAVSDMLLSDYGVYVQPINFP----------------  364 (401)
T ss_dssp             H-TCC-BCCC-----------------SSSCEEEECCC-HHHHHHHHHHHHHHHCEECCEECTT----------------
T ss_pred             C-CCc-ccCC-----------------CCCeEEEEeCC-hHHHHHHHHHHHhcCCEEEeecCCC----------------
Confidence            5 332 1111                 14588998864 234556666662 446666543211                


Q ss_pred             HHHHhcCC--CCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          497 SERLKYGI--MDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       497 ~~~~~~gi--~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                            +.  ..+.+|||++...+++.++.+.++|+
T Consensus       365 ------~~~~~~~~iRis~~~~~t~~~i~~~~~~l~  394 (401)
T 2bwn_A          365 ------TVPRGTERLRFTPSPVHDLKQIDGLVHAMD  394 (401)
T ss_dssp             ------TSCTTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             ------CCCCCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence                  11  13689999997655555555555554

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.93  E-value=1.8e-24  Score=221.17  Aligned_cols=280  Identities=11%  Similarity=0.034  Sum_probs=193.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      +...++++++++++|.+  +++++++|++|+..++.+++++||+|+++.+.|++..  +...++..|.++..++.+    
T Consensus        34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  111 (352)
T 1iug_A           34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  111 (352)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCC
Confidence            45788999999999985  5677778889999999999999999999999998865  223455678888887642    


Q ss_pred             -CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCC-cccccccCCcEEEECCcccc
Q 009523          275 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       275 -dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~l  350 (532)
                       |+++|++   + ++++|++++|+||||.+.|+++|.++|+++  |+++|+|++++.+. .......++|+++.|+||++
T Consensus       112 ~d~~~l~~---~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  187 (352)
T 1iug_A          112 PRPEDVAK---E-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGL  187 (352)
T ss_dssp             CCTTTSCC---S-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTT
T ss_pred             CCHHHHhc---c-CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccc
Confidence             5666655   3 689999999999999999999999999999  99999999986432 12223457899999999966


Q ss_pred             CCCCCcEEEEEEeChHHHHH---------HHH----H-hhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQ---------IRN----L-HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMA  412 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~---------l~~----~-~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~la  412 (532)
                      +++.+  .|+++.+++++++         ++.    . .....++.+......+...++.    +....++..++++++.
T Consensus       188 ~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  265 (352)
T 1iug_A          188 MCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLY  265 (352)
T ss_dssp             CCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCCc--eeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65432  5888888887654         221    1 1122234455444433334433    3345566667888888


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccccc
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW  492 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~  492 (532)
                      +.|++. ++. +..|.               ..+++++|.++.+ .....+.+.|...++.+..|..      +      
T Consensus       266 ~~L~~~-g~~-~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~------~------  315 (352)
T 1iug_A          266 GVGEEG-GLR-PVPKR---------------FSPAVAAFYLPEG-VPYARVKEAFAQRGAVIAGGQG------P------  315 (352)
T ss_dssp             HHHHHT-TCE-ESCSS---------------BCTTCEEEECCTT-CCHHHHHHHHHTTTEECEECCG------G------
T ss_pred             HHHHHC-CCc-ccccc---------------cCCeEEEEEcCCC-CCHHHHHHHHHHCCEEEEeCCC------c------
Confidence            888876 543 32221               1366899998732 2245566666666777766531      1      


Q ss_pred             CCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          493 DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       493 ~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                                 ..++.|||+++....++.++.+.++|
T Consensus       316 -----------~~~~~iRi~~~~~~~~~~i~~~~~~l  341 (352)
T 1iug_A          316 -----------LKGKVFRLSLMGAYDRYEALGVAGMF  341 (352)
T ss_dssp             -----------GTTTEEEECCCSSCCHHHHHHHHHHH
T ss_pred             -----------cCCCEEEEEccccCCHHHHHHHHHHH
Confidence                       02578999999654333334443333

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.93  E-value=7.4e-24  Score=223.78  Aligned_cols=288  Identities=15%  Similarity=0.141  Sum_probs=197.5

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..++++++++++    |.    + +++++++|++|+.+++.+++++||+|+++.+.|++....    ++..|.++..++.
T Consensus        79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~  154 (429)
T 1yiz_A           79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPM----VKAAGGIPRFIPL  154 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeC
Confidence            567777777775    52    4 677777778999999999999999999999999986543    3456777776642


Q ss_pred             ---------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          274 ---------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       274 ---------------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                                     .|+++|++++++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....    
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~  233 (429)
T 1yiz_A          155 KPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE  233 (429)
T ss_dssp             BCCCSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC
T ss_pred             CcccccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence                           478999999986 7999999999999999996   88999999999999999999874321    


Q ss_pred             ---cccc--ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----------
Q 009523          332 ---QKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----------  396 (532)
Q Consensus       332 ---~~~l--~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----------  396 (532)
                         ...+  ..+.|+++.|+||.++++| ...|++++++++++.++..........++..+..+...++.          
T Consensus       234 ~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  312 (429)
T 1yiz_A          234 HIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPEC  312 (429)
T ss_dssp             CCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTS
T ss_pred             CcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHH
Confidence               1112  3467999999999998665 45799999999998887765444444556555555555544          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-----------HHHHHHH
Q 009523          397 -LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-----------TATIKFI  464 (532)
Q Consensus       397 -l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-----------~~~~~~l  464 (532)
                       +....++..++++.+.+.|+++ ++. +..|.                .|.++++++++..           .....+.
T Consensus       313 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  374 (429)
T 1yiz_A          313 YFNSISGELMAKRDYMASFLAEV-GMN-PTVPQ----------------GGYFMVADWSSLDSKVDLTQETDARKDYRFT  374 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TCE-EEECS----------------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEEEEEcccccccccccccccCCCHHHHH
Confidence             2333344556777777888765 343 22221                3568899987420           2345566


Q ss_pred             HHcC-CCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          465 DALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       465 ~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                      +.|. ..++.+..|..+...  +              ..+..++.||||++.  ++.++.++.|.++++
T Consensus       375 ~~l~~~~gv~v~~g~~f~~~--~--------------~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          375 KWMTKSVGLQGIPPSAFYSE--P--------------NKHLGEDFVRYCFFKKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             HHHHHHTSEECBCGGGGSCG--G--------------GGGGTTTEEEEECCSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhCCEEEeCchHhCCC--c--------------ccCCCCCeEEEEecCCHHHHHHHHHHHHHhcc
Confidence            6553 457777766443210  0              001125799999996  123334444444443

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.93  E-value=5.6e-25  Score=227.70  Aligned_cols=277  Identities=13%  Similarity=0.054  Sum_probs=190.0

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccC--CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~--Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..++++++++++    |.    ++.+++++|++|+..++.+++++  ||+|+++.++|++...    .+...|.++..++
T Consensus        61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~  136 (376)
T 3ezs_A           61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG----AAKFIKAKSLLMP  136 (376)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH----HHHHcCCEEEEcc
Confidence            456777777665    63    56888888899999999999999  9999999999997553    3456788888887


Q ss_pred             CCCHH----HHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----cccc------
Q 009523          273 PADME----GLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL------  335 (532)
Q Consensus       273 ~~dle----~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l------  335 (532)
                      .++.+    ++++++.+ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ....      
T Consensus       137 ~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (376)
T 3ezs_A          137 LTKENDFTPSLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLA  215 (376)
T ss_dssp             CCGGGTSCCCCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHT
T ss_pred             cCCCCCcchhHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccc
Confidence            54322    56666766 6899999999999999998   56777779999999999999875321    1111      


Q ss_pred             ---ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHH
Q 009523          336 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTAL  409 (532)
Q Consensus       336 ---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~  409 (532)
                         ..+.++++.|+||.+|.+| ...|++++++++++.++......+...++..++.+...++.   +....++..++.+
T Consensus       216 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  294 (376)
T 3ezs_A          216 GNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLK  294 (376)
T ss_dssp             TCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             cccccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence               3577899999999997554 45789999999999988776655666677766665555543   3333344445555


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccccccCcc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa~  488 (532)
                      .+.+.|+   ++.   .|                ..|.++++.++ +   ...+.+.|.. .++.+..|..+...     
T Consensus       295 ~l~~~l~---~~~---~~----------------~~~~~~~~~~~-~---~~~~~~~l~~~~gi~v~~g~~~~~~-----  343 (376)
T 3ezs_A          295 LARKIFK---NTL---IY----------------PYSFYVYLPVQ-N---GENFAKTLYQNEGIITLPALYLGRN-----  343 (376)
T ss_dssp             HHHHHST---TCC---CC----------------SBSSEEEEECS-C---HHHHHHHHHHHHCCBCEEGGGGCST-----
T ss_pred             HHHHHhc---CCC---CC----------------CcceEEEEECC-C---HHHHHHHHHHhCCEEEeCcHHhCCC-----
Confidence            5555554   111   11                24678899887 2   2334444433 46666666443210     


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                                    +..++.||||++.  ++.++.++.|.++++
T Consensus       344 --------------~~~~~~iRis~~~~~~~i~~~l~~l~~~l~  373 (376)
T 3ezs_A          344 --------------RIGADYVRLALVYDTPLLEKPLEIIETYRE  373 (376)
T ss_dssp             --------------TTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             --------------CCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence                          1236899999976  233444555555554

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=2.1e-24  Score=226.41  Aligned_cols=212  Identities=18%  Similarity=0.266  Sum_probs=170.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      .+...++++++++++|.++.+++++|++|+..++.++ +++||+|+++.++|+++..    .+...|+++..++.     
T Consensus        62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~  137 (399)
T 2oga_A           62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWL----AVSATGATPVPVEPHEDHP  137 (399)
T ss_dssp             SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEECBCSSSS
T ss_pred             chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHH----HHHHCCCEEEEEecCCCCC
Confidence            4788999999999999988999999999999999999 8999999999999998654    34456888888763     


Q ss_pred             -CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEEEECC--cc
Q 009523          274 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK  348 (532)
Q Consensus       274 -~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDivv~S~--sK  348 (532)
                       .|+++|++++++ ++++|+   |+||||.+.|+++|.++|+++|+++|+|++++.+...+....+  .|+++.|+  +|
T Consensus       138 ~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK  213 (399)
T 2oga_A          138 TLDPLLVEKAITP-RTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGK  213 (399)
T ss_dssp             SBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTS
T ss_pred             CcCHHHHHHhcCC-CCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCc
Confidence             279999999987 699887   5789999999999999999999999999999765332322334  69999999  69


Q ss_pred             ccCCCCCcEEEEEEeC-hHHHHHHHHHhhhc----------C--CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~----------G--~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L  415 (532)
                      +++++|  .+|+++.+ +++++.++......          |  ..+++..++++..+++.+....++..++++++.+.|
T Consensus       214 ~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L  291 (399)
T 2oga_A          214 NLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGL  291 (399)
T ss_dssp             SSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999866  47888875 78888777644321          1  245677777777778777766777777888888888


Q ss_pred             HhCCCc
Q 009523          416 EAHPKV  421 (532)
Q Consensus       416 ~~~p~v  421 (532)
                      ++.|++
T Consensus       292 ~~~~g~  297 (399)
T 2oga_A          292 AGLPGI  297 (399)
T ss_dssp             TTCTTC
T ss_pred             ccCCCc
Confidence            876654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.93  E-value=3.5e-24  Score=226.58  Aligned_cols=284  Identities=12%  Similarity=0.063  Sum_probs=201.3

Q ss_pred             CCCch-hHHHHHHHHHhhh-----CC--Cc---EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhccc-C
Q 009523          197 RYGNP-TTVVVEEKMSALE-----GA--ES---TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-M  264 (532)
Q Consensus       197 R~~~p-~~~~Le~~lA~l~-----ga--~~---~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~-~  264 (532)
                      +|+.+ ...+|++++|+++     +.  ++   ++++++|++|+.+++.+++++||+|+++.|+|++...    .+.. .
T Consensus        83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~  158 (430)
T 2x5f_A           83 PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL----VFNTRN  158 (430)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHTTTT
T ss_pred             ccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH----HHHHhc
Confidence            44443 4678999999998     64  45   6777777899999999999999999999999998653    3455 7


Q ss_pred             CcEEEEeCC------CCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHh-----CCCEEEEECCCCC
Q 009523          265 GITATVIDP------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFAT  328 (532)
Q Consensus       265 Gv~v~~vd~------~dle~Le~al~~~--~tklV~lesP~NptG~v~d---l~~I~~la~~-----~gi~lIvDet~a~  328 (532)
                      |.++..++.      .|+++|++++++.  ++++|++++|+||||.++|   +++|.++|++     +|+++|+|++|..
T Consensus       159 g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~  238 (430)
T 2x5f_A          159 GANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG  238 (430)
T ss_dssp             CCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT
T ss_pred             CCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc
Confidence            888887763      3689999988652  5899999999999999999   8899999999     9999999999875


Q ss_pred             CCc----c-c---cc-c-cCC---cEEEECCccccCCCCCcEEEEEEe---ChHHHHHHHHHhhh----cCCCccHHHHH
Q 009523          329 PLN----Q-K---AL-S-LGA---DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV----LGGALNPNAAY  388 (532)
Q Consensus       329 ~~~----~-~---~l-~-~ga---Divv~S~sK~lgg~gd~~gG~lv~---~~~li~~l~~~~~~----~G~~~~~~~a~  388 (532)
                      ...    . .   .+ . .+.   ++++.|+||.++.+| ...|++++   ++++++.+......    .....++..++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  317 (430)
T 2x5f_A          239 LFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQS  317 (430)
T ss_dssp             CBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred             ccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC-CCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHH
Confidence            321    1 1   11 1 345   788999999998665 35688888   88998888765543    34446677666


Q ss_pred             HHHHhHH----HHHH---HHHHHHHHHHHHHHHHHhC---CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH
Q 009523          389 LIIRGMK----TLHL---RVQQQNSTALRMAKILEAH---PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT  458 (532)
Q Consensus       389 l~l~~l~----tl~~---r~~~~~~~a~~la~~L~~~---p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~  458 (532)
                      .+...++    ....   ..++..++++.+.+.|+++   .++. +..|                ..|.++++.+++  .
T Consensus       318 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~-~~~~----------------~~g~~~~~~~~~--~  378 (430)
T 2x5f_A          318 AVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQ-AYDF----------------NSGYFMAIKVHD--V  378 (430)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEE-ECCC----------------CBSSEEEEEESS--S
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce-eeCC----------------CceEEEEeCCCC--C
Confidence            6666665    2222   4455556777788888732   1232 2111                134568999873  2


Q ss_pred             HHHHHHHHcCC-CceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHhh
Q 009523          459 ATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG---VEDFEDLKADVLQALHA  531 (532)
Q Consensus       459 ~~~~~l~~L~~-~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG---~ed~~dli~dL~~AL~~  531 (532)
                      ....+.+.|.. .++.+..|                           .++.+|||++   .++.+++++.|.+++++
T Consensus       379 ~~~~~~~~l~~~~gi~v~~g---------------------------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          379 DPEALRKHLIDKYSIGVIAL---------------------------NATDIRIAFSCVEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             CHHHHHHHHHHHHCEECEEC---------------------------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCEEEecC---------------------------CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            23455555543 46655543                           1468999999   35577778888887764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.93  E-value=2e-24  Score=224.62  Aligned_cols=293  Identities=14%  Similarity=0.129  Sum_probs=199.3

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      |+.+..+..+++++++++++|.+   +.+++++|++|+..++.+++++||+|+++.+.|++..  +...++..|.+++.+
T Consensus        46 ~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  123 (393)
T 2huf_A           46 LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVV  123 (393)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEE
Confidence            33444567889999999999974   3456678889999999999999999999999998742  223445678888887


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEEC
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  345 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S  345 (532)
                      +.     .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|+++..+.. ......++|+++.|
T Consensus       124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  203 (393)
T 2huf_A          124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTG  203 (393)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred             eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEEC
Confidence            63     4899999998752589999999999999999999999999999999999999764322 22234578999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHh----h-h---------cC---------CCccHHHHHHHHHhHHH-----H
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----H-V---------LG---------GALNPNAAYLIIRGMKT-----L  397 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----~-~---------~G---------~~~~~~~a~l~l~~l~t-----l  397 (532)
                      +||+++|+.+  .|++++++++++.++...    . .         ++         ++.+......+...++.     +
T Consensus       204 ~sK~l~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  281 (393)
T 2huf_A          204 SQKVLGAPPG--ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL  281 (393)
T ss_dssp             SSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCcccccCCC--eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence            9998654332  288889998888876531    0 0         11         23333333322223332     3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecC
Q 009523          398 HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSF  476 (532)
Q Consensus       398 ~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~  476 (532)
                      ....++..++++++.+.|++. ++. +..|.     .        ...+++++|.++.+ .....+.+.|.. .++.+..
T Consensus       282 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~  345 (393)
T 2huf_A          282 PALIARHEDCAKRLYRGLQDA-GFE-LYADP-----K--------DRLSTVTTIKVPQG-VDWLKAAQYAMKTYLVEISG  345 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCe-eccCc-----c--------ccCCcEEEEEcCCC-CCHHHHHHHHHHhCCEEEec
Confidence            345566667888888888876 432 21110     0        01345888988622 123445555532 3666665


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cCC----CHHHHHHHHHHHHh
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVE----DFEDLKADVLQALH  530 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~e----d~~dli~dL~~AL~  530 (532)
                      |..+                       ..++.|||++ +..    +.+.+++.|.++++
T Consensus       346 g~~~-----------------------~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~  381 (393)
T 2huf_A          346 GLGP-----------------------TAGQVFRIGLMGQNATTERVDRVLQVFQEAVA  381 (393)
T ss_dssp             CCGG-----------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             Cccc-----------------------ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence            5321                       0257899999 632    34556666666654

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.93  E-value=2.3e-24  Score=225.70  Aligned_cols=287  Identities=17%  Similarity=0.195  Sum_probs=200.4

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...++++++++++    |.    ++++++++|++|+.+++.+++++||+|+++.++|++...    .+...|.++..++.
T Consensus        76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~~  151 (407)
T 2zc0_A           76 GIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLL----AFEQLGAKIEGVPV  151 (407)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHTTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH----HHHHcCCEEEEccc
Confidence            4678899999888    72    456677777899999999999999999999999998653    34556888777754


Q ss_pred             ----CCHHHHHHhhc----C-CCeeEEE-EeCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCc-----cccc
Q 009523          274 ----ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-----QKAL  335 (532)
Q Consensus       274 ----~dle~Le~al~----~-~~tklV~-lesP~NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~-----~~~l  335 (532)
                          .|+++|+++++    + .++++|+ +++|+||||.+.|++   +|+++|+++|+++|+|++|+....     ....
T Consensus       152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  231 (407)
T 2zc0_A          152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK  231 (407)
T ss_dssp             ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred             CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence                37999999987    4 2689874 789999999999976   899999999999999999875421     1111


Q ss_pred             c---cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-------HHHHHHHHH
Q 009523          336 S---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQN  405 (532)
Q Consensus       336 ~---~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-------l~~r~~~~~  405 (532)
                      .   .+.++++.|+||+++ +| ..+|++++++++++.++......+...++.....+...++.       +....++..
T Consensus       232 ~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  309 (407)
T 2zc0_A          232 ALDNEGRVIVAGTLSKVLG-TG-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYK  309 (407)
T ss_dssp             GGCSSCCEEEEEESTTTTC-TT-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHH
T ss_pred             hcCCCCCEEEEcccccccC-CC-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            2   245689999999999 44 45899999999998888765544444466655555444443       222334455


Q ss_pred             HHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCccccc
Q 009523          406 STALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIV  483 (532)
Q Consensus       406 ~~a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~sl~  483 (532)
                      ++++.+.+.|++ .|++. +..|.                .|.++++.++.+ .....+.+.|... ++.+..|..+.. 
T Consensus       310 ~~~~~l~~~L~~~~~~~~-~~~~~----------------~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~~~~-  370 (407)
T 2zc0_A          310 EKRDIMLKALENHLPNAE-FTKPI----------------AGMFVMFFLPEG-ADGISFANELMEREGVVVVPGKPFYT-  370 (407)
T ss_dssp             HHHHHHHHHHHHHCTTSC-BCCCS----------------BSSEEEEECSTT-CCHHHHHHHHHHHTCEECBCSGGGCS-
T ss_pred             HHHHHHHHHHHHhCCCCE-EecCC----------------CcEEEEEEcCCC-CCHHHHHHHHHHhCCeEEECchhccC-
Confidence            677778888876 35432 21221                356889998642 1234555555444 777776643210 


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHhh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALHA  531 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~---ed~~dli~dL~~AL~~  531 (532)
                         .               +..++.+|||++.   ++.+.+++.|.+++++
T Consensus       371 ---~---------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  403 (407)
T 2zc0_A          371 ---D---------------ESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE  403 (407)
T ss_dssp             ---S---------------SCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred             ---C---------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence               0               0125799999986   4566777777777654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.93  E-value=9e-25  Score=226.51  Aligned_cols=290  Identities=14%  Similarity=0.176  Sum_probs=202.1

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          200 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      .+...++++++++++|.+   .+++++||++|+..++++++++||+|+++.+.|.+..  +...+...|.++..++.   
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~  132 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPG  132 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCC
Confidence            456778999999999874   3566788889999999999999999999988876432  22445667888887763   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~l  350 (532)
                        .|+++|+++++++++++|++++|+||||.+.|+++|.++|++||+++|+|++++.+ ........++|+++.|+||++
T Consensus       133 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~  212 (393)
T 3kgw_A          133 EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVL  212 (393)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTT
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccc
Confidence              48999999997645999999999999999999999999999999999999998743 233334567899999999987


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHHhh--------------h---------cCCCccHHHHHHHHHhHHH-----HHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNLHH--------------V---------LGGALNPNAAYLIIRGMKT-----LHLRVQ  402 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~~~--------------~---------~G~~~~~~~a~l~l~~l~t-----l~~r~~  402 (532)
                      +++.+  .|++++++++++.+.....              .         ..++.+....+.+...++.     +....+
T Consensus       213 ~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  290 (393)
T 3kgw_A          213 NAPPG--ISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR  290 (393)
T ss_dssp             CCCSS--CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCCCc--eeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            65432  6889999998888764221              0         1123344444433333332     345566


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCES  481 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~s  481 (532)
                      +..++++++.+.|++. ++. +..|.    +.        ...+.+++|.++.+ .....+.+.|... ++.+..|... 
T Consensus       291 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~-  354 (393)
T 3kgw_A          291 RHREATAHLHKHLQEM-GLK-FFVKD----PE--------IRLPTITTVTVPAG-YNWRDIVSYVLDHFSIEISGGLGP-  354 (393)
T ss_dssp             HHHHHHHHHHHHHHHT-TCC-BSSSS----GG--------GBCSSEEEEECCTT-BCHHHHHHHHHHHHCEECBCCCGG-
T ss_pred             HHHHHHHHHHHHHHHc-CCe-eccCC----hh--------hcCCeEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCCccc-
Confidence            6778888888889876 332 11111    00        12456788988632 2234455555433 6666665320 


Q ss_pred             ccccCccccccCCCHHHHHhcCCCCCeEEEEe-cC----CCHHHHHHHHHHHHhh
Q 009523          482 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       482 l~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~----ed~~dli~dL~~AL~~  531 (532)
                                            ..++.|||++ +.    ++.+++++.|.+++++
T Consensus       355 ----------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          355 ----------------------TEERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             ----------------------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence                                  1257999998 64    4556677777777654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.93  E-value=8.8e-25  Score=224.10  Aligned_cols=285  Identities=16%  Similarity=0.126  Sum_probs=194.5

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHHHhcccCCcEEEEeCC--
Q 009523          201 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETVLPKMGITATVIDP--  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~~Gd~VIv~~-~~y~~t~~~~~~~l~~~Gv~v~~vd~--  273 (532)
                      +...++++++++++|.+    +++++++|++|+..++.+++++||+|++.. +.|+..+   ...+...|+++..++.  
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~  113 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE  113 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence            67889999999999953    478888899999999999999999988776 4444322   2334556777777754  


Q ss_pred             ---CCHHHHHHhhcCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCcc
Q 009523          274 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  348 (532)
Q Consensus       274 ---~dle~Le~al~~~-~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~sK  348 (532)
                         .|+++|+++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|+||
T Consensus       114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K  193 (366)
T 1m32_A          114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK  193 (366)
T ss_dssp             TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred             CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence               4799999999753 489999999999999999999999999999999999999875422 22223578999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHh---------------hh---cCCCccHHHHHHHHHhHHHH------HHHHHHH
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLH---------------HV---LGGALNPNAAYLIIRGMKTL------HLRVQQQ  404 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~---------------~~---~G~~~~~~~a~l~l~~l~tl------~~r~~~~  404 (532)
                      +++++.+  .|++++++++++.++...               ..   ...+.++...+.+...++.+      ....++.
T Consensus       194 ~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~  271 (366)
T 1m32_A          194 CIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY  271 (366)
T ss_dssp             TTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccCCCc--eEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence            8855432  499999888776553210               00   01244555444444444432      3345666


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      .++++++.+.|++. ++. +..|.     .        ...|.+++|.++.  + .....+.+.|...++.+..|..+  
T Consensus       272 ~~~~~~l~~~L~~~-~~~-~~~~~-----~--------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~--  333 (366)
T 1m32_A          272 QQNQRSLVAGMRAL-GFN-TLLDD-----E--------LHSPIITAFYSPEDPQ-YRFSEFYRRLKEQGFVIYPGKVS--  333 (366)
T ss_dssp             HHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCSSEEEEECCCCTT-CCHHHHHHHHHHTTEECEECCCS--
T ss_pred             HHHHHHHHHHHHHC-CCe-eccCc-----h--------hcCceEEEEEcCccCC-CCHHHHHHHHHHCCEEEECCcCC--
Confidence            67888888888876 332 21110     0        1135689999873  2 23445556655557766655321  


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                            ..+.|||+++...+++.++.+.++|+
T Consensus       334 ----------------------~~~~iRi~~~~~~~~~~i~~~~~~l~  359 (366)
T 1m32_A          334 ----------------------QSDCFRIGNIGEVYAADITALLTAIR  359 (366)
T ss_dssp             ----------------------SSCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEecCCCCCHHHHHHHHHHHH
Confidence                                  24789999997655554555555543

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=1e-24  Score=230.64  Aligned_cols=286  Identities=13%  Similarity=0.114  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHhhh----C---C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALE----G---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~----g---a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+|++++|+++    |   .  ++++++++|++|+.+++.+++++||+|+++.|+|++....    +...|.++..++
T Consensus        86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~  161 (425)
T 1vp4_A           86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINA----FRQYLANFVVVP  161 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEEec
Confidence            4677888888888    7   3  3566666667999999999999999999999999986543    445677777765


Q ss_pred             C----CCHHHHHHhhcC-------CCeeEEE-EeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----c
Q 009523          273 P----ADMEGLEAALNN-------NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----Q  332 (532)
Q Consensus       273 ~----~dle~Le~al~~-------~~tklV~-lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~  332 (532)
                      .    .|+++|++++++       .++++|+ +++|+||||.+.+   +++|+++|+++|+++|+|++|+....     .
T Consensus       162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~  241 (425)
T 1vp4_A          162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD  241 (425)
T ss_dssp             EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred             cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence            4    379999998864       2589985 7899999999997   56888999999999999999875321     1


Q ss_pred             cc--c-ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHH
Q 009523          333 KA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQ  403 (532)
Q Consensus       333 ~~--l-~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~  403 (532)
                      ..  + ..+.++++.|+||+++ +| ...|++++++++++.++..........++..++.+...++.      +....++
T Consensus       242 ~~~~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  319 (425)
T 1vp4_A          242 PIFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIEL  319 (425)
T ss_dssp             CHHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred             CHHHhCCCCCEEEEeccccccc-cc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            11  1 1256799999999999 44 56899999999998887655444334466666666555554      2333444


Q ss_pred             HHHHHHHHHHHHHhC-C---CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCc
Q 009523          404 QNSTALRMAKILEAH-P---KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       404 ~~~~a~~la~~L~~~-p---~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      ..++++.+.+.|+++ |   ++. +..|.                .|.++++.++.+ .....+.+.|...++.+..|..
T Consensus       320 ~~~~~~~l~~~L~~~~~~~~g~~-~~~~~----------------~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~g~~  381 (425)
T 1vp4_A          320 YRRKRTVMLNALEEYFSDIPGVK-WVKSE----------------GGLFIWLTLPEG-FDTWEMFEYAKRKKVFYVPGRV  381 (425)
T ss_dssp             HHHHHHHHHHHHHHHSTTSTTCE-ECCCS----------------BSSEEEEECCTT-CCTTTTHHHHHHHTEECEEGGG
T ss_pred             HHHHHHHHHHHHHHhCCCCCceE-EecCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCCEEECchh
Confidence            556777888888764 4   342 22221                466899998742 1122333443333666666543


Q ss_pred             ccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009523          480 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH  530 (532)
Q Consensus       480 ~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e---d~~dli~dL~~AL~  530 (532)
                      +..    .               +..++.||||++..   +.+++++.|.++++
T Consensus       382 f~~----~---------------~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~  416 (425)
T 1vp4_A          382 FKV----Y---------------DEPSPSMRLSFCLPPDEKIVEGIKRLREVVL  416 (425)
T ss_dssp             GCT----T---------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             hcC----C---------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            210    0               11357899999974   34555666666654

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.93  E-value=4.3e-24  Score=224.18  Aligned_cols=284  Identities=13%  Similarity=0.089  Sum_probs=194.0

Q ss_pred             hHHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~----g--a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...++++++++++    |  .  ++++++++|++|+.+++.+++++||+|+++.++|++....    +...|.++..++.
T Consensus        79 g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~  154 (406)
T 1xi9_A           79 GLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGL----VKFYGGKPVEYRT  154 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeec
Confidence            3567888888876    2  2  4677778888999999999999999999999999885533    3456777776653


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc--c
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--L  337 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~--~  337 (532)
                             .|+++|++++++ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.+..    .....  .
T Consensus       155 ~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~  233 (406)
T 1xi9_A          155 IEEEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK  233 (406)
T ss_dssp             EGGGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS
T ss_pred             CCCcCCcCCHHHHHHhhCc-CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCC
Confidence                   279999999987 7999999999999999987   88999999999999999999875421    11112  3


Q ss_pred             CC-cEEEECCccccCCCCCcEEEEEE--eCh----HHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHH
Q 009523          338 GA-DLVLHSATKFIGGHNDVLAGSIS--GSG----KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNS  406 (532)
Q Consensus       338 ga-Divv~S~sK~lgg~gd~~gG~lv--~~~----~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~  406 (532)
                      +. |+++.|+||+++++| ...|+++  +++    ++++.++...... ...++..++.+...++    .+....++..+
T Consensus       234 ~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  311 (406)
T 1xi9_A          234 DVPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKE  311 (406)
T ss_dssp             SSCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CceEEEEeccccccCCCc-cEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            56 899999999998555 3468887  888    8998887655433 3445555554444443    23444455567


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHHHHHHHHHcC-CCceeecCCCccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTATIKFIDALK-IPYIAPSFGGCESIV  483 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--~~~~~~~~l~~L~-~~~i~vs~G~~~sl~  483 (532)
                      +++.+.+.|++.|++. +..|.                .|.++++.++.  + .....+.+.|. ..++.+..|..+.. 
T Consensus       312 ~~~~l~~~L~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~-  372 (406)
T 1xi9_A          312 RRDYIYKRLNEIPGIS-TTKPQ----------------GAFYIFPKIEVGPW-KNDKEFVLDVLHNAHVLFVHGSGFGE-  372 (406)
T ss_dssp             HHHHHHHHHHTSTTEE-CCCCC----------------BSSEECCEECSCSC-SSHHHHHHHHHHHHCEECEEGGGGCG-
T ss_pred             HHHHHHHHHHhCCCCe-eecCC----------------eeEEEEEecCccCC-CCHHHHHHHHHHhCCEEEeCchhcCC-
Confidence            7788888888776543 21111                24466667763  1 12344555543 44666665543210 


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                                          ..++.||||++..  +.++.++.|.+++++
T Consensus       373 --------------------~~~~~lRis~~~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          373 --------------------YGAGHFRAVFLPPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             --------------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence                                0257899999931  233445555555543

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=1.7e-23  Score=217.99  Aligned_cols=284  Identities=16%  Similarity=0.085  Sum_probs=192.7

Q ss_pred             HHH-HHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVV-VEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~-Le~~lA~l~----g--a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+ |++++++++    |  .  ++++++++|++|+.+++.+++++||+|+++.|.|++....    +...|.++..++.
T Consensus        65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~  140 (390)
T 1d2f_A           65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKA----IEGNQRTVMPVAL  140 (390)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEEC
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHH----HHHCCCEEEEeec
Confidence            445 777777764    4  2  4677788888999999999999999999999999986543    3456777777653


Q ss_pred             --------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----cccccc
Q 009523          274 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL  337 (532)
Q Consensus       274 --------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~  337 (532)
                              .|+++|++++++.++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|.....     .....+
T Consensus       141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  220 (390)
T 1d2f_A          141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV  220 (390)
T ss_dssp             EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred             ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence                    48999999997546999999999999999988   88999999999999999999875321     111222


Q ss_pred             C--C-cEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhh-hcC-CCccHHHHHHHHHhHHH----HHHHHHHHHHH
Q 009523          338 G--A-DLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH-VLG-GALNPNAAYLIIRGMKT----LHLRVQQQNST  407 (532)
Q Consensus       338 g--a-Divv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~-~~G-~~~~~~~a~l~l~~l~t----l~~r~~~~~~~  407 (532)
                      .  . |. +.|+||.+|.+| ...|+++++ +++++.++.... ... ++.++..++.+...++.    +....++..++
T Consensus       221 ~~~~~d~-~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  298 (390)
T 1d2f_A          221 ARGDWAL-LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN  298 (390)
T ss_dssp             CCSSEEE-EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chhhHhh-ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2  2 67 999999998554 457888875 688888876554 223 24566655554444442    33444555677


Q ss_pred             HHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCccccccc
Q 009523          408 ALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       408 a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~  485 (532)
                      ++.+.+.|++ .|++. +..|                ..|.+++++++........+.+.|. ..++.+..|..+.    
T Consensus       299 ~~~l~~~L~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~----  357 (390)
T 1d2f_A          299 LTYIADKMNAAFPELN-WQIP----------------QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG----  357 (390)
T ss_dssp             HHHHHHHHHHHCSSCC-CCCC----------------SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC----
T ss_pred             HHHHHHHHHhhCCCCE-EecC----------------CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC----
Confidence            7888888887 56542 1111                1244568888631012345666665 5677777664431    


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~  530 (532)
                      +                 ..++.+|||++..+  .++.++.|.++++
T Consensus       358 ~-----------------~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  387 (390)
T 1d2f_A          358 E-----------------EGRGFVRLNAGCPRSKLEKGVAGLINAIR  387 (390)
T ss_dssp             G-----------------GGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             C-----------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            0                 02578999999742  2333344444443

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.93  E-value=2.8e-24  Score=227.29  Aligned_cols=288  Identities=13%  Similarity=0.067  Sum_probs=195.8

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHH--HHHHHHhcc--C----------CCEEEEcCCCCcchHHHHHHhcccC
Q 009523          201 PTTVVVEEKMSALEGA--ESTVIMASGMSAS--TVMLLALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai--~~al~all~--~----------Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      ....+|+++||++++.  ++.++++++++++  .+++.+++.  |          ||+|+++.|+|.+...    .++..
T Consensus        78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~----~~~~~  153 (427)
T 3ppl_A           78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS----ITERF  153 (427)
T ss_dssp             SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH----HHHHT
T ss_pred             CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH----HHHHc
Confidence            3567899999999986  3566666667899  578888877  6          9999999999998654    34556


Q ss_pred             CcEEEEeCCC----CHHHHHHhhcCCCeeEEEEe-CCCCCCCcccCHH---HHHHHH-HhCCCEEEEECCCCCCCc----
Q 009523          265 GITATVIDPA----DMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       265 Gv~v~~vd~~----dle~Le~al~~~~tklV~le-sP~NptG~v~dl~---~I~~la-~~~gi~lIvDet~a~~~~----  331 (532)
                      |.++..++.+    |+++|+++++..++++|+++ +|+||||.+++.+   +|+++| +++|+++|+|++|+....    
T Consensus       154 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~  233 (427)
T 3ppl_A          154 GFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF  233 (427)
T ss_dssp             TCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence            8887777543    89999999954479999976 7899999999977   888888 999999999999875211    


Q ss_pred             ---cccc-------ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-----
Q 009523          332 ---QKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----  396 (532)
Q Consensus       332 ---~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-----  396 (532)
                         .+..       ..+.++++.|+||+++ +| ...|++++++++++.++......+...++..+..+...++.     
T Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  311 (427)
T 3ppl_A          234 PEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVR  311 (427)
T ss_dssp             CCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred             CCccchhhhhhccCCCCcEEEEechhhccC-cC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHH
Confidence               1111       2357799999999944 33 45789999999999988776666655666655554444332     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHhC-C---CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC
Q 009523          397 --LHLRVQQQNSTALRMAKILEAH-P---KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP  470 (532)
Q Consensus       397 --l~~r~~~~~~~a~~la~~L~~~-p---~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~  470 (532)
                        +....+...++.+.+.+.|.++ +   .+ .+..|.                .|.++++.+++.  ....+.+.|...
T Consensus       312 ~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~-~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~l~~~  372 (427)
T 3ppl_A          312 AVMRKHAASLAPKFNKVLEILDSRLAEYGVA-QWTVPA----------------GGYFISLDVVPG--TASRVAELAKEA  372 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCC-EECCCS----------------BSSCEEEECSTT--CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCce-EEeCCC----------------ccEEEEEECCcc--hHHHHHHHHHHC
Confidence              2222223334555566666542 2   22 222231                467899999753  244566666666


Q ss_pred             ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009523          471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH  530 (532)
Q Consensus       471 ~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed---~~dli~dL~~AL~  530 (532)
                      ++.+..|+.+...   .              .+..++.||||++..+   .++.++.|.++++
T Consensus       373 gv~v~~~g~~~~~---~--------------~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~  418 (427)
T 3ppl_A          373 GIALTGAGSSYPL---R--------------QDPENKNLRLAPSLPPVEELEVAMDGVATCVL  418 (427)
T ss_dssp             TEECCCTTTTSGG---G--------------CCTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEecCcCcCCC---C--------------CCCCCCeEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            8888875432110   0              0113689999999754   3444555555554

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.93  E-value=2.8e-24  Score=227.09  Aligned_cols=290  Identities=13%  Similarity=0.152  Sum_probs=196.8

Q ss_pred             CCCCchh-HHHHHHHHHhhhC--------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          196 GRYGNPT-TVVVEEKMSALEG--------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       196 ~R~~~p~-~~~Le~~lA~l~g--------a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      .+|+++. ..+|++++|++++        .  +..+++++|++++..++.+++++||+|++++|+|++...   ......
T Consensus        77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~  153 (428)
T 1iay_A           77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRT  153 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTT
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhc
Confidence            4566665 7889999999876        2  345666666699999999999999999999999998542   133456


Q ss_pred             CcEEEEeCCC-------CHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCC
Q 009523          265 GITATVIDPA-------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       265 Gv~v~~vd~~-------dle~Le~al~~-----~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~  329 (532)
                      |+++..++.+       |+++|++++++     .++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|...
T Consensus       154 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~  233 (428)
T 1iay_A          154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred             CCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence            8888887642       78999988863     26999999999999999999   889999999999999999998652


Q ss_pred             Cc----c-c--ccccC-------Cc--EEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 009523          330 LN----Q-K--ALSLG-------AD--LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR  392 (532)
Q Consensus       330 ~~----~-~--~l~~g-------aD--ivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~  392 (532)
                      ..    . .  .+...       .|  +++.|+||.+|.+| ...|++++ ++++++.++.....+  ..++..+.++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~  310 (428)
T 1iay_A          234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFG--LVSTQTQYFLAA  310 (428)
T ss_dssp             CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTTS--CCCHHHHHHHHH
T ss_pred             ccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHHHHhcc--cCCHHHHHHHHH
Confidence            11    1 1  11112       57  89999999998555 45688887 678888887654433  234444444443


Q ss_pred             hHHH-------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----HHHH
Q 009523          393 GMKT-------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LTAT  460 (532)
Q Consensus       393 ~l~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----~~~~  460 (532)
                      .++.       +....++..++++.+.+.|+++ ++. + ++.               ..|.++++++++.     ....
T Consensus       311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~---------------~~g~~~~~~~~~~~~~~~~~~~  372 (428)
T 1iay_A          311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIK-C-LKN---------------NAGLFCWMDLRPLLRESTFDSE  372 (428)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-B-CCC---------------SSSSEEEEECGGGCSSSSHHHH
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCC---------------CeeEEEEEechhhcCCCchhHH
Confidence            3332       2334445557778888888876 332 2 111               1366889988642     1234


Q ss_pred             HHHHHHcCC-CceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHh
Q 009523          461 IKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH  530 (532)
Q Consensus       461 ~~~l~~L~~-~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~---ed~~dli~dL~~AL~  530 (532)
                      ..+.+.|.. .++.+..|+.+..                     ..++++||+++.   ++.+.+++.|.++++
T Consensus       373 ~~l~~~l~~~~gi~v~~~~~~~~---------------------~~~~~iRis~~~~~~e~i~~~~~~l~~~l~  425 (428)
T 1iay_A          373 MSLWRVIINDVKLNVSPGSSFEC---------------------QEPGWFRVCFANMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             HHHHHHHHHTSCEECEEGGGGTC---------------------SSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            466666643 3777766543210                     015789999993   234445555555554

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=3.5e-24  Score=223.49  Aligned_cols=305  Identities=14%  Similarity=0.102  Sum_probs=213.1

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      ..++...+|++++++++|.+++++++||++|+..++.++ +++||+|+++.++|+++...    +...|.++.+++.+  
T Consensus        53 ~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~  128 (391)
T 3dr4_A           53 SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANS----VTYCGATPVLVDNDPR  128 (391)
T ss_dssp             SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTT
T ss_pred             CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHH----HHHCCCEEEEEecCcc
Confidence            357889999999999999999999999999999999999 99999999999999987543    34568888888754  


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEEEECCc-
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT-  347 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDivv~S~s-  347 (532)
                          |+++|++++++ ++++|+   |+||||.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|++ 
T Consensus       129 ~~~~d~~~l~~~~~~-~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~  204 (391)
T 3dr4_A          129 TFNLDAAKLEALITP-RTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFG  204 (391)
T ss_dssp             TCSBCGGGSGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBT
T ss_pred             ccCcCHHHHHHhcCC-CceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCC
Confidence                78999999987 799888   5789999999999999999999999999998865433222222  478888855 


Q ss_pred             -cccCCCCCcEEEEEEeC-hHHHHHHHHHhhhc--------------CCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009523          348 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  411 (532)
Q Consensus       348 -K~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~--------------G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~l  411 (532)
                       |+++++   .+|+++.+ +++.+.++......              ...+.+..+.+.+..++.+....++..++++++
T Consensus       205 ~K~l~~g---~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l  281 (391)
T 3dr4_A          205 NAIITTG---EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWY  281 (391)
T ss_dssp             TSSSCCB---SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCcCCcC---CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             999873   37777765 45777666543211              123455666655555666666677777888888


Q ss_pred             HHHHHhCCCceEEeC--CCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccccccCcc
Q 009523          412 AKILEAHPKVKRVHY--PGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       412 a~~L~~~p~v~~V~~--Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      .+.|++. ++.....  +...            ...+.++++.++.. ......+.+.|...++.++.|. ..+.+.|..
T Consensus       282 ~~~L~~~-g~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~-~p~~~~~~~  347 (391)
T 3dr4_A          282 EQKLARL-GNRVTKPHVALTG------------RHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVF-HPMHIMPPY  347 (391)
T ss_dssp             HHHHGGG-TTSEECCCCCTTS------------CCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECC-CCGGGSGGG
T ss_pred             HHHhhcC-CccccCcCCCCCC------------cceeEEEEEEECCccchhHHHHHHHHHHCCCceeecC-CccccChhh
Confidence            8888876 5433222  1100            11234677877641 1224456666655577777553 223333332


Q ss_pred             ccc--cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          489 MSY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       489 ~s~--~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ..+  ..++....    +.++.|||+++...+++.++.+.++|++
T Consensus       348 ~~~~~~~~~~~~~----~~~~~lrl~~~~~~t~edi~~~~~~l~~  388 (391)
T 3dr4_A          348 AHLATDDLKIAEA----CGVDGLNLPTHAGLTEADIDRVIAALDQ  388 (391)
T ss_dssp             GGGCCTTCHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred             hhcCcCCChHHHH----HHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            111  11222111    1246899999988888888888888765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=8.4e-24  Score=222.34  Aligned_cols=285  Identities=14%  Similarity=0.136  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          202 TTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga--------~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...+++++++++++.        +++++++||++|+..++.+++++||+|+++.++|++....    +...|.++..++.
T Consensus        80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~  155 (409)
T 2gb3_A           80 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAF----AKIAGVKLIPVTR  155 (409)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHHTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEecc
Confidence            456788888887641        5678888888999999999999999999999999986543    4456788887765


Q ss_pred             CC------HHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc--cC
Q 009523          274 AD------MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LG  338 (532)
Q Consensus       274 ~d------le~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~--~g  338 (532)
                      ++      +++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++++....    ...+.  .+
T Consensus       156 ~~~~~~~~~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~  234 (409)
T 2gb3_A          156 RMEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESD  234 (409)
T ss_dssp             CGGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCT
T ss_pred             CCCCCCccHHHHHHhhCc-CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCC
Confidence            42      7888988877 7999999999999999975   78999999999999999999875421    11122  36


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~~~~~~a~l~l~~l~----tl~~r~~~~~~~a~~la~  413 (532)
                      .|+++.|+||++|.+| ...|++++++ ++++.++....... ..++..++.+...++    .+....++..++++.+.+
T Consensus       235 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  312 (409)
T 2gb3_A          235 KVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLK  312 (409)
T ss_dssp             TEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999998554 4578999988 89888877655443 556665555544442    234444556677788888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC------ceeecCCCcccccccCc
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP------YIAPSFGGCESIVDQPA  487 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~------~i~vs~G~~~sl~~~pa  487 (532)
                      .|+++ ++..+..|                ..|.++++.+++  .....+.+.|...      ++.+..|..+..  .  
T Consensus       313 ~L~~~-g~~~~~~~----------------~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~--~--  369 (409)
T 2gb3_A          313 KLEEH-GLKRFTKP----------------SGAFYITAELPV--EDAEEFARWMLTDFNMDGETTMVAPLRGFYL--T--  369 (409)
T ss_dssp             HHHHT-TCCCBCCC----------------SBSSEEEEECSS--SCHHHHHHHHHHSCCBTTEEEECEEGGGGCS--S--
T ss_pred             HHHHc-CceeeeCC----------------CeeEEEEEEeCC--CCHHHHHHHHHhccccccCcEEEeCchHhCC--C--
Confidence            88876 33210111                135577778863  1234455555432      666665533210  0  


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                                    .+..++.+||+++.  ++.+++++.|.++++
T Consensus       370 --------------~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~  400 (409)
T 2gb3_A          370 --------------PGLGKKEIRIACVLEKDLLSRAIDVLMEGLK  400 (409)
T ss_dssp             --------------TTTTSSEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence                          01236799999994  223445555555554

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.92  E-value=1.6e-23  Score=220.06  Aligned_cols=253  Identities=15%  Similarity=0.151  Sum_probs=176.6

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~-~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+|++++++++    |.    + +++++++|++|+.+++.+++++||+|+++.++|++....    +...|.++..++.
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~~v~~  139 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPV----VAMAGAHRVTVPL  139 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH----HHHcCCEEEEeec
Confidence            467777777775    52    3 677777778999999999999999999999999986543    4456777777653


Q ss_pred             --------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCc-------cccc
Q 009523          274 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-------QKAL  335 (532)
Q Consensus       274 --------~dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~-------~~~l  335 (532)
                              .|+++|++++++ ++++|++++|+||||.+.|.   ++|+++|+++|+++|+|++|+....       ...+
T Consensus       140 ~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  218 (411)
T 2o0r_A          140 VPDGRGFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF  218 (411)
T ss_dssp             EEETTEEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cccccCCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence                    489999999987 79999999999999999874   8999999999999999999875321       1111


Q ss_pred             --ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q 009523          336 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTAL  409 (532)
Q Consensus       336 --~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~  409 (532)
                        ..+.|+++.|+||.++.+| ...|++++++++++.+.......+...++.....+...++.    +....++..++++
T Consensus       219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  297 (411)
T 2o0r_A          219 DGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRD  297 (411)
T ss_dssp             TTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence              1467999999999998665 46799999999988887655433333333333333333332    3344455557777


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcC-CCceeecCCCc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALK-IPYIAPSFGGC  479 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~-~~~i~vs~G~~  479 (532)
                      .+.+.|++. ++. +..|.                .|.++++.++.. ......+.+.|. ..++.+..|..
T Consensus       298 ~l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~  351 (411)
T 2o0r_A          298 RLAAGLTEI-GFA-VHDSY----------------GTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSA  351 (411)
T ss_dssp             HHHHHHHHH-TCE-ECCCC----------------BSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGG
T ss_pred             HHHHHHHHc-CCE-ecCCC----------------eeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhh
Confidence            788888765 332 22121                355889988641 011334555442 34666666644

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.92  E-value=1.1e-23  Score=219.31  Aligned_cols=302  Identities=18%  Similarity=0.187  Sum_probs=210.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      ..+...++++++++++|.+++++++||++|+..++.++ +++||+|+++.++|+++...    ++..|++++.++.    
T Consensus        37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~  112 (393)
T 1mdo_A           37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM----IVLLGANPVMVDVDRDT  112 (393)
T ss_dssp             SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHH----HHHCCCEEEEEeccCCc
Confidence            45889999999999999999999999999999999999 99999999999999986543    4457888888763    


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC-CcEEEECCc--c
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHSAT--K  348 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g-aDivv~S~s--K  348 (532)
                        .|+++|++++++ ++++|+++   ||+|.+.|+++|.++|+++|+++|+|++++.+........+ .|+++.|+|  |
T Consensus       113 ~~~d~~~l~~~l~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K  188 (393)
T 1mdo_A          113 LMVTPEHIEAAITP-QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK  188 (393)
T ss_dssp             CCBCHHHHHHHCCT-TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred             CCCCHHHHHHhcCC-CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence              378999999987 79999874   58999999999999999999999999999865332222345 899999999  9


Q ss_pred             ccCCCCCcEEEEEEeC-hHHHHHHHHHhhhc----------------------C--CCccHHHHHHHHHhHHHHHHHHHH
Q 009523          349 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------------------G--GALNPNAAYLIIRGMKTLHLRVQQ  403 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~----------------------G--~~~~~~~a~l~l~~l~tl~~r~~~  403 (532)
                      +++|+   .+|+++.+ +++++.++......                      |  ..+++..+.++...++.+....++
T Consensus       189 ~l~~~---~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~  265 (393)
T 1mdo_A          189 NITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR  265 (393)
T ss_dssp             SSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccccc---cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99864   47888886 78888876543210                      1  124666666666667767777777


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeC-CCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcCCCceeecCCCc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHY-PGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALKIPYIAPSFGGC  479 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~-Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L~~~~i~vs~G~~  479 (532)
                      ..++++++.+.|.+.+ +. +.. |.. ..          .+.+.+++|.++.   + .....+.+.|...++.++.|..
T Consensus       266 ~~~~~~~l~~~L~~~~-~~-~~~~~~~-~~----------~~~~~~~~v~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~  331 (393)
T 1mdo_A          266 RAAIAAQYHQAMADLP-FQ-PLSLPSW-EH----------IHAWHLFIIRVDEARCG-ITRDALMASLKTKGIGTGLHFR  331 (393)
T ss_dssp             HHHHHHHHHHHHHTSS-CE-ECCCCSS-CE----------ECCCSCEEEECCHHHHS-SCHHHHHHHHHHTTBCCBCCCC
T ss_pred             HHHHHHHHHHHHhcCC-cc-cccCCCC-CC----------CceeEEEEEEecccccc-cCHHHHHHHHHhCCCCcccccC
Confidence            7788889999998876 43 221 210 00          1234578888862   1 1244566666556777776643


Q ss_pred             ccccccCcccc---ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          480 ESIVDQPAIMS---YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       480 ~sl~~~pa~~s---~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      .. ...|....   ...++...+    +..+.|||+++...+++.++.+.++|+
T Consensus       332 ~~-~~~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~~~~t~~~i~~~~~~l~  380 (393)
T 1mdo_A          332 AA-HTQKYYRERFPTLTLPDTEW----NSERICSLPLFPDMTESDFDRVITALH  380 (393)
T ss_dssp             CG-GGSHHHHHHSTTCCCHHHHH----HHTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cc-ccChhhhccCCccCChhHHH----HHhCEEEecCCCCCCHHHHHHHHHHHH
Confidence            21 00010000   000111000    124689999996555555555555554

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.92  E-value=5.8e-24  Score=221.36  Aligned_cols=294  Identities=15%  Similarity=0.138  Sum_probs=198.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      |+.+..+...++++++++++|.+   +++++++|++|+..++.+++++||+|+++.++|++..  +...++..|++++.+
T Consensus        45 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  122 (396)
T 2ch1_A           45 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTI  122 (396)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEe
Confidence            44444456889999999999974   3556677889999999999999999999999998853  123456678888887


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEEC
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  345 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S  345 (532)
                      +.     .|+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. .......++|+++.|
T Consensus       123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s  202 (396)
T 2ch1_A          123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG  202 (396)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred             cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEc
Confidence            63     489999999875358999999999999999999999999999999999999987432 122234578999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHh-----------------------hhcCCCccHHHHHHHHHhHHH-----H
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMKT-----L  397 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-----------------------~~~G~~~~~~~a~l~l~~l~t-----l  397 (532)
                      ++|+++++.+  .|+++.++++++.++...                       ....++.+......+...++.     +
T Consensus       203 ~~K~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  280 (396)
T 2ch1_A          203 AQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGL  280 (396)
T ss_dssp             CC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCccccCCCC--eEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhH
Confidence            9998776543  388888988887764310                       001122344333333333333     3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecC
Q 009523          398 HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSF  476 (532)
Q Consensus       398 ~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~-~~i~vs~  476 (532)
                      ....++..++++++.+.|+++ ++. +..|.    ..+        ..+.+++|.++.+ .....+.+.|.. .++.+..
T Consensus       281 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~~--------~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~  345 (396)
T 2ch1_A          281 ENQIKRRIECAQILYEGLGKM-GLD-IFVKD----PRH--------RLPTVTGIMIPKG-VDWWKVSQYAMNNFSLEVQG  345 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TCC-BSSCS----GGG--------BCTTEEEEECCTT-CCHHHHHHHHHHHHCBCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCe-eccCC----ccc--------cCCceEEEEcCCC-CCHHHHHHHHHHhCCEEEec
Confidence            345566667788888888875 332 21111    000        1356889988632 123445555432 2555554


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cC----CCHHHHHHHHHHHHh
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GV----EDFEDLKADVLQALH  530 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~----ed~~dli~dL~~AL~  530 (532)
                      |..      +                 ..++.|||++ +.    |+.+.+++.|.++++
T Consensus       346 g~~------~-----------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~  381 (396)
T 2ch1_A          346 GLG------P-----------------TFGKAWRVGIMGECSTVQKIQFYLYGFKESLK  381 (396)
T ss_dssp             CCG------G-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             Ccc------c-----------------cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence            421      0                 1257899999 63    345666666666664

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.92  E-value=2e-23  Score=219.45  Aligned_cols=283  Identities=11%  Similarity=0.085  Sum_probs=191.0

Q ss_pred             hhHHHHHHHHHhhhC--------------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          201 PTTVVVEEKMSALEG--------------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       201 p~~~~Le~~lA~l~g--------------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ....++++++|++++              .++++++++|++|+.+++.+++++||+|+++.++|++...    .++..|+
T Consensus        75 ~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~  150 (416)
T 1bw0_A           75 VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET----VCKAYGI  150 (416)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTC
T ss_pred             CCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH----HHHHcCc
Confidence            356788999998887              2467777777899999999999999999999999998653    3455677


Q ss_pred             EEEEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----
Q 009523          267 TATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----  331 (532)
Q Consensus       267 ~v~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----  331 (532)
                      ++..++.       .|+++|++++++ ++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|.....     
T Consensus       151 ~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  229 (416)
T 1bw0_A          151 GMHFYNCRPENDWEADLDEIRRLKDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDP  229 (416)
T ss_dssp             EEEEEEEEGGGTTEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCT
T ss_pred             EEEEeecCcccCCCCCHHHHHHHhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence            7776652       378999999987 6999999999999999999   88999999999999999999875321     


Q ss_pred             ---c-cccc---cCCcEEEECCccccCCCCCcEEEEEEeCh--HHHHHHH----HHhhhcCCCccHHHHHHHHHhHH---
Q 009523          332 ---Q-KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIR----NLHHVLGGALNPNAAYLIIRGMK---  395 (532)
Q Consensus       332 ---~-~~l~---~gaDivv~S~sK~lgg~gd~~gG~lv~~~--~li~~l~----~~~~~~G~~~~~~~a~l~l~~l~---  395 (532)
                         . ....   .+.++++.|+||.++.+| ...|++++++  ++++.+.    .... .....++..++.+...++   
T Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~  307 (416)
T 1bw0_A          230 NATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP  307 (416)
T ss_dssp             TCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC
T ss_pred             CCCccCHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc
Confidence               1 1111   123588999999987665 3467887755  2444333    2221 122345555555554443   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-C
Q 009523          396 --TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-K  468 (532)
Q Consensus       396 --tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~----~~~~~~~l~~L-~  468 (532)
                        .+....++..++++.+.+.|+++|++. +..|.                .|.++++.++..    ......+.+.| +
T Consensus       308 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  370 (416)
T 1bw0_A          308 QEHLDQIVAKIEESAMYLYNHIGECIGLA-PTMPR----------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLE  370 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCC----------------BTTEEEEEECGGGBSSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCC----------------eeEEEEEeCCHHHcCCCCCHHHHHHHHHH
Confidence              344455666678888888888776654 32221                356788888521    01234455544 3


Q ss_pred             CCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          469 IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       469 ~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                      ..++.+..|..+.                       .++.+|||++..  +.++.++.|.++++
T Consensus       371 ~~gi~v~~g~~f~-----------------------~~~~iRis~~~~~e~l~~~l~~l~~~l~  411 (416)
T 1bw0_A          371 EENVQVLPGTIFH-----------------------APGFTRLTTTRPVEVYREAVERIKAFCQ  411 (416)
T ss_dssp             HHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             HCCEEEecccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            4466666554321                       146899999852  23344444455543

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.92  E-value=7e-24  Score=216.31  Aligned_cols=284  Identities=13%  Similarity=0.108  Sum_probs=194.9

Q ss_pred             hhHHHHHHHHHhhhCCC---c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAE---S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      +...++++++++++|.+   + .+++++|++|+..++.++++  |+|+++++.|++. . +...++..|+++..++.   
T Consensus        33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~  108 (353)
T 2yrr_A           33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-R-VAEMAALHGLDPEVLDFPPG  108 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-H-HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-H-HHHHHHHcCCceEEEeCCCC
Confidence            44788999999999973   4 45556778999999998876  8999999999875 2 22445667888888764   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~sK~l  350 (532)
                        .|+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|++|++
T Consensus       109 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  188 (353)
T 2yrr_A          109 EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCL  188 (353)
T ss_dssp             SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTT
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccc
Confidence              4799999998753589999999999999999999999999999999999999864322 2223457899999999977


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHH-------------H--hhhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRN-------------L--HHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALR  410 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~-------------~--~~~~G~~~~~~~a~l~l~~l~t-----l~~r~~~~~~~a~~  410 (532)
                      +++.+  .|++++++++++.++.             .  .....++.+......+...++.     +....++..+++++
T Consensus       189 ~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  266 (353)
T 2yrr_A          189 SAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAW  266 (353)
T ss_dssp             CCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            65432  4899999988876641             0  1122234455444433333333     33445666678888


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|++. ++. +..|.              ...+.+++|.++.+ .....+.+.|...++.+..|..+          
T Consensus       267 l~~~L~~~-g~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~----------  319 (353)
T 2yrr_A          267 VLEELKAR-GFR-PYPKA--------------SPLPTVLVVRPPEG-VDADRLVRALYAEGVAVAGGIGP----------  319 (353)
T ss_dssp             HHHHHHHT-TCE-ESCSS--------------SBCTTEEEEECCTT-CCHHHHHHHHHHTTEECEECCGG----------
T ss_pred             HHHHHHHC-CCc-cccCc--------------cCCCeEEEEECCCC-CCHHHHHHHHHHCCEEEeCCccc----------
Confidence            88888876 543 22121              01356788988632 12345566665557777666421          


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEec-C---CCHH-HHHHHHHHHHh
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFG-V---EDFE-DLKADVLQALH  530 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG-~---ed~~-dli~dL~~AL~  530 (532)
                                   ..++.+|||++ .   ++.+ .+++.|.++++
T Consensus       320 -------------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          320 -------------TRGQVLRLGLMGEGARREAYQAFLKALDRALA  351 (353)
T ss_dssp             -------------GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             -------------cCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence                         02468999993 2   3344 55666666654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=2.1e-23  Score=215.79  Aligned_cols=286  Identities=14%  Similarity=0.147  Sum_probs=195.1

Q ss_pred             hHHHHHHHHHhhhCC------CcEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCC-CCcchHHHHHHhcccCCcEEEEe
Q 009523          202 TTVVVEEKMSALEGA------ESTVIMASGMSASTVMLLALV---PAGGHIVTTTD-CYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga------~~~i~~sSG~~Ai~~al~all---~~Gd~VIv~~~-~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ...+++++++++++.      +++++++||++|+.+++.++.   ++||+|++..+ .|+...   ...++..|.+++.+
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v  115 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVV  115 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEE
Confidence            356688888888875      346677788899999999997   89999988744 554432   13455678898888


Q ss_pred             CC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCCC-cccccccCCcEE
Q 009523          272 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL-NQKALSLGADLV  342 (532)
Q Consensus       272 d~------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~~-~~~~l~~gaDiv  342 (532)
                      +.      .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++  |+++|+|++++.+. ..+....++|++
T Consensus       116 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~  195 (385)
T 2bkw_A          116 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA  195 (385)
T ss_dssp             CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred             ecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEE
Confidence            76      3799999999753589999999999999999999999999999  99999999987442 223334578999


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHH-HHH------------------HH--hhhcC-----CCccHHHHHHHHHhHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVT-QIR------------------NL--HHVLG-----GALNPNAAYLIIRGMKT  396 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~-~l~------------------~~--~~~~G-----~~~~~~~a~l~l~~l~t  396 (532)
                      +.|+||+++++.+  .|++++++++++ .++                  ..  ....+     ++.+....+.+...++.
T Consensus       196 ~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  273 (385)
T 2bkw_A          196 LTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE  273 (385)
T ss_dssp             EEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred             EecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999997765432  388888888776 442                  11  01111     23455444433334433


Q ss_pred             -----HHHHHHHHHHHHHHHHHHH-HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC
Q 009523          397 -----LHLRVQQQNSTALRMAKIL-EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP  470 (532)
Q Consensus       397 -----l~~r~~~~~~~a~~la~~L-~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~  470 (532)
                           +....++..++++++.+.| ++. ++. +..|.    +..       ...+++++|.+++    ...+.+.|...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~-~~~~~----~~~-------~~~~~~~~~~~~~----~~~~~~~l~~~  336 (385)
T 2bkw_A          274 ILEEGLHKRWDLHREMSDWFKDSLVNGL-QLT-SVSRY----PSN-------MSAHGLTAVYVAD----PPDVIAFLKSH  336 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE-ESSCS----SST-------TBCSSCEEEECSC----HHHHHHHHHHT
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHhc-Cce-ecccC----ccc-------ccCCceEEEecCC----HHHHHHHHHHC
Confidence                 3344566667888888888 765 442 22221    000       0146789999874    34556666555


Q ss_pred             ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE-ec-------CCCHHHHHHHHHHHHhh
Q 009523          471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS-FG-------VEDFEDLKADVLQALHA  531 (532)
Q Consensus       471 ~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS-vG-------~ed~~dli~dL~~AL~~  531 (532)
                      ++.++.|..+                      ...++.+||| ++       .|+.+.+++.|.+++++
T Consensus       337 gi~v~~g~~~----------------------~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          337 GVVIAGGIHK----------------------DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             TEECBCCCCT----------------------TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CeEEeCCCCc----------------------ccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            7777665321                      0124689999 76       25667777888777654

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.2e-23  Score=220.98  Aligned_cols=273  Identities=13%  Similarity=0.103  Sum_probs=189.1

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..+|++++++++    |.    ++++++++|++|+..++.+++++||+|++++|.|++....    +...|.++..++. 
T Consensus        97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~  172 (447)
T 3b46_A           97 RPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPN----IELCGGKVVYVPIN  172 (447)
T ss_dssp             CHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEeCC
Confidence            467777777775    42    3567777778999999999999999999999999986543    3445766665541 


Q ss_pred             ----------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          274 ----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       274 ----------------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                                      .|+++|++++++ ++++|++++|+||||.+.+   +++|+++|++||+++|+|++|.....   
T Consensus       173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~  251 (447)
T 3b46_A          173 PPKELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS  251 (447)
T ss_dssp             CCGGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred             CccccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC
Confidence                            378999999986 7999999999999999975   88999999999999999999875321   


Q ss_pred             ---cccc---ccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HH
Q 009523          332 ---QKAL---SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LH  398 (532)
Q Consensus       332 ---~~~l---~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~  398 (532)
                         ...+   ..+.|+++.|+||+++.+| ...|++++ ++++++.++........+.++..++++...++.      +.
T Consensus       252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~  330 (447)
T 3b46_A          252 FTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFE  330 (447)
T ss_dssp             CCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHH
Confidence               1112   2478999999999998665 35799999 999998887655434444455555444444443      22


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--------------HHHHHHHH
Q 009523          399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--------------LTATIKFI  464 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--------------~~~~~~~l  464 (532)
                      ...++..++++.+.+.|+++ ++. +..|.                .|.+++++++..              ......|.
T Consensus       331 ~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  392 (447)
T 3b46_A          331 KMRQEYINKFKIFTSIFDEL-GLP-YTAPE----------------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRIS  392 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCC-EECCS----------------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----------------eeEEEEEecccccCccccccccccccCCCHHHHH
Confidence            33445556777788888775 332 22221                366888888631              12344566


Q ss_pred             HHcC-CCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          465 DALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       465 ~~L~-~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                      +.|. ..++.+..|+.+...  +.              .+..+++||||++.
T Consensus       393 ~~l~~~~gV~v~pg~~f~~~--~~--------------~~~~~~~iRls~~~  428 (447)
T 3b46_A          393 HWLINELGVVAIPPTEFYIK--EH--------------EKAAENLLRFAVCK  428 (447)
T ss_dssp             HHHHHHTCEECBCGGGGSCG--GG--------------GGGGTTEEEEECCS
T ss_pred             HHHHHhCCEEEECchHhCCC--Cc--------------cCCCCCEEEEEEeC
Confidence            6553 357777776543210  00              00125799999996

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.92  E-value=1.7e-23  Score=220.61  Aligned_cols=288  Identities=10%  Similarity=0.076  Sum_probs=194.1

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHH--HHHHHhcc--C---------CCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          201 PTTVVVEEKMSALEGA--ESTVIMASGMSAST--VMLLALVP--A---------GGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~--~al~all~--~---------Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      +...+|+++||++++.  ++.+++++|++++.  +++.+++.  +         ||+|+++.|+|.+....    +...|
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g  145 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLL----LQTLG  145 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHH----HHHHT
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHH----HHHcC
Confidence            4467899999999986  35666677779997  88888887  8         59999999999886543    44457


Q ss_pred             cEEEEeCC----CCHHHHHHhhc-CCCeeEEEEe-CCCCCCCcccCHH---HHHHHH-HhCCCEEEEECCCCCCCc----
Q 009523          266 ITATVIDP----ADMEGLEAALN-NNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       266 v~v~~vd~----~dle~Le~al~-~~~tklV~le-sP~NptG~v~dl~---~I~~la-~~~gi~lIvDet~a~~~~----  331 (532)
                      .++..++.    .|+++|+++++ ..++++|+++ +|+||||.+++.+   +|+++| +++|+++|+|++|.....    
T Consensus       146 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~  225 (423)
T 3ez1_A          146 FELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED  225 (423)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred             CEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence            77777654    38999999994 2379999865 8999999999977   788888 899999999999873211    


Q ss_pred             ----cccc-------ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----
Q 009523          332 ----QKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----  396 (532)
Q Consensus       332 ----~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----  396 (532)
                          ....       ..+.++++.|+||.+.+ | ...|++++++++++.++......+...++..+..+...++.    
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~-G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  303 (423)
T 3ez1_A          226 RAEPVNFVVLARDAGYPDRAFVFASTSKITFA-G-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG  303 (423)
T ss_dssp             CCCCCCHHHHHHHHTCTTSEEEEEESTTTSCS-S-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH
T ss_pred             CCCCcchhhhhhccCCCCeEEEEeCchhhccC-C-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch
Confidence                0111       23567999999997433 3 45789999999999998877666666677666655554444    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHh-CCCc---eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC
Q 009523          397 ----LHLRVQQQNSTALRMAKILEA-HPKV---KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK  468 (532)
Q Consensus       397 ----l~~r~~~~~~~a~~la~~L~~-~p~v---~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~  468 (532)
                          +....+...++.+.+.+.|.+ .+.+   ..+..|.                .|.++++.+++.  ....+.+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~l~  365 (423)
T 3ez1_A          304 LEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK----------------GGYFISLDTAEP--VADRVVKLAE  365 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS----------------BSSCEEEEESSS--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC----------------ccEEEEEECCCC--cHHHHHHHHH
Confidence                111122223444555555543 2221   2333332                467899999753  2345555666


Q ss_pred             CCceeecC-CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009523          469 IPYIAPSF-GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH  530 (532)
Q Consensus       469 ~~~i~vs~-G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed---~~dli~dL~~AL~  530 (532)
                      ..++.+.. |..+...                  .+..++.||||++..+   .++.++.|.++++
T Consensus       366 ~~gv~v~~~g~~~~~~------------------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  413 (423)
T 3ez1_A          366 AAGVSLTPAGATYPAG------------------QDPHNRNLRLAPTRPPVEEVRTAMQVVAACIR  413 (423)
T ss_dssp             HTTEECCCTTTTSSTT------------------CCSSSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HCCcEEecCcccccCC------------------CCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            66888877 4332110                  0113689999999644   3444555555554

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.92  E-value=1.2e-23  Score=217.12  Aligned_cols=303  Identities=16%  Similarity=0.176  Sum_probs=204.9

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+...+++++|++++|.+++++++||++|+..++.++   +++||+|+++.++|+++...+    ...|+++.+++.+  
T Consensus        31 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~  106 (375)
T 2fnu_A           31 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKND  106 (375)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCTT
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHH----HHCCCEEEEeccCCC
Confidence            6788999999999999988899999999999999999   899999999999999876443    3468888888753  


Q ss_pred             ---CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC--CcEEEECCc--
Q 009523          275 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--  347 (532)
Q Consensus       275 ---dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g--aDivv~S~s--  347 (532)
                         |+++|++++++ ++++|++++|   +|.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|++  
T Consensus       107 ~~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~  182 (375)
T 2fnu_A          107 GNIDELALEKLINE-RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI  182 (375)
T ss_dssp             SSBCGGGSGGGCCT-TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             CCCCHHHHHhhcCc-CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCC
Confidence               78999999987 7999888766   899999999999999999999999998765322211122  378888888  


Q ss_pred             cccCCCCCcEEEEEEeC-hHHHHHHHHHhhh--------------cC--CCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR  410 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~-~~li~~l~~~~~~--------------~G--~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~  410 (532)
                      |++++ |  +||+++.+ ++++++++.....              .+  ..+.+..+.+.+..++.+..++++..+++++
T Consensus       183 K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  259 (375)
T 2fnu_A          183 KPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT  259 (375)
T ss_dssp             SSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99976 4  46666654 6788877664321              11  1355666666555666677777888889999


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH-HHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT-ATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~-~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|++.|++. +..|.-..           .+.+.++++.++.... ....+.+.|...++.++.+ +......+...
T Consensus       260 l~~~L~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~-~~p~~~~~~~~  326 (375)
T 2fnu_A          260 YDRIFKDNPYFT-PLHPLLKD-----------KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVH-YKPIYQYQLYQ  326 (375)
T ss_dssp             HHHHHTTCSSEE-ESGGGCSS-----------CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCC-CCCGGGSHHHH
T ss_pred             HHHHhhcCCCcc-ccCCCCCC-----------CcceEEEEEEeCccccchHHHHHHHHHHCCCCcccc-ccccccchhhh
Confidence            999999877653 22110000           1123456777763111 3456666666567776632 11111101000


Q ss_pred             ---cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          490 ---SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       490 ---s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                         ....++...    ...++.|||+++....++.++.+.++|+
T Consensus       327 ~~~~~~~~~~~~----~~~~~~lRi~~~~~~t~~~i~~~~~~l~  366 (375)
T 2fnu_A          327 QLFNTAPLKSAE----DFYHAEISLPCHANLNLESVQNIAHSVL  366 (375)
T ss_dssp             HHHCCCCCHHHH----HHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCccCChHHH----HHHhCEEEecCCCCCCHHHHHHHHHHHH
Confidence               000011000    0124689999997666555565555554

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.92  E-value=7.5e-24  Score=224.74  Aligned_cols=297  Identities=13%  Similarity=0.062  Sum_probs=195.4

Q ss_pred             hhHHHHHHHHHhhh------C--CCcEEEeCCHHHHHHHHHHHhccCCC--------------EEEEc-CCCCcchHHHH
Q 009523          201 PTTVVVEEKMSALE------G--AESTVIMASGMSASTVMLLALVPAGG--------------HIVTT-TDCYRKTRIFI  257 (532)
Q Consensus       201 p~~~~Le~~lA~l~------g--a~~~i~~sSG~~Ai~~al~all~~Gd--------------~VIv~-~~~y~~t~~~~  257 (532)
                      ....+|++++|+++      +  .++++++++|++|+.+++.+++++||              +|+++ .|+|.+.....
T Consensus        83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~  162 (444)
T 3if2_A           83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH  162 (444)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence            34678888888886      2  35788888889999999999999998              78876 88998754211


Q ss_pred             H--HhcccCCcEEEEeC----------CCCHHHHHHh---hcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCE
Q 009523          258 E--TVLPKMGITATVID----------PADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAI  319 (532)
Q Consensus       258 ~--~~l~~~Gv~v~~vd----------~~dle~Le~a---l~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~  319 (532)
                      .  ..+...|..+..++          ..|+++|+++   +++ ++++|++++|+||||.++|   +++|+++|+++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~  241 (444)
T 3if2_A          163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIP  241 (444)
T ss_dssp             SSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred             cccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCE
Confidence            0  02455677776665          2489999988   565 7999999999999999999   78899999999999


Q ss_pred             EEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh
Q 009523          320 VCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  393 (532)
Q Consensus       320 lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~  393 (532)
                      +|+|++|+.++.      ..+...+.++++.|+||+ +++| ...|++++++++++.++......+...++..+.++...
T Consensus       242 li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  319 (444)
T 3if2_A          242 LIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPL  319 (444)
T ss_dssp             EEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred             EEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            999999875322      111224678999999997 4443 46789999999999888766544444444444433333


Q ss_pred             HHHH------HH-HHHHHHHHHHHHHHHHHh-CCCce-EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHH
Q 009523          394 MKTL------HL-RVQQQNSTALRMAKILEA-HPKVK-RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI  464 (532)
Q Consensus       394 l~tl------~~-r~~~~~~~a~~la~~L~~-~p~v~-~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l  464 (532)
                      ++..      .. ..+...++.+.+.+.|.+ .+.+. .+..|.                .|.++++.++........+.
T Consensus       320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~l~  383 (444)
T 3if2_A          320 VANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE----------------GAIFLWLWFKDLPISTLDLY  383 (444)
T ss_dssp             HHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC----------------BSSEEEEEETTCSSCHHHHH
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC----------------ccEEEEEEcCCCCCCHHHHH
Confidence            3321      11 122334556667777765 34432 233232                46788999874112345566


Q ss_pred             HHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHH---HHHHHHHHHHh
Q 009523          465 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE---DLKADVLQALH  530 (532)
Q Consensus       465 ~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~---dli~dL~~AL~  530 (532)
                      +.|...++.++.|..+........             .....+.||||++. +.+   +.++.|.++++
T Consensus       384 ~~l~~~gi~v~~g~~~~~~~~~~~-------------~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~  438 (444)
T 3if2_A          384 ERLKAKGTLIVPSEYFFPGVDVSD-------------YQHAHECIRMSIAA-DEQTLIDGIKVIGEVVR  438 (444)
T ss_dssp             HHHHHTTEECEEGGGSCTTCCCTT-------------CSGGGSEEEEESSS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeEEecchhhcCCCCCcc-------------cccCCCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence            666666888887765431100000             00024789999998 433   34455555544

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.92  E-value=9.2e-24  Score=220.83  Aligned_cols=291  Identities=14%  Similarity=0.172  Sum_probs=202.8

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHh----
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV----  260 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~----  260 (532)
                      +.+.+++++...++++++++++|.+++++++||++|+..++..+..       +| |+|++.++.|++........    
T Consensus        73 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~  152 (406)
T 4adb_A           73 HTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP  152 (406)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCG
T ss_pred             cccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCc
Confidence            4446678899999999999999999999999999999999998765       66 99999999999864322221    


Q ss_pred             -----cccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc-----CHHHHHHHHHhCCCEEEEECCCCCC-
Q 009523          261 -----LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATP-  329 (532)
Q Consensus       261 -----l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~-----dl~~I~~la~~~gi~lIvDet~a~~-  329 (532)
                           +...+..+..++..|+++|++++++ ++++|+++ |+||+|.+.     ++++|.++|++||+++|+||++... 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~  230 (406)
T 4adb_A          153 AYSQDFAPLPADIRHAAYNDINSASALIDD-STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVG  230 (406)
T ss_dssp             GGTGGGCSCCSSEEEECTTCHHHHHTTCST-TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             cccccCCCCCCCceEeCCCcHHHHHHHhcC-CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence                 1122346677788899999999986 79999998 999999775     5889999999999999999998632 


Q ss_pred             -----CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH--HHHHH
Q 009523          330 -----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQ  402 (532)
Q Consensus       330 -----~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl--~~r~~  402 (532)
                           +.........|++  |+||.+++ | ..+|++++++++++.++..........++..++.+...++.+  ....+
T Consensus       231 ~~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  306 (406)
T 4adb_A          231 RTGELYAYMHYGVTPDLL--TTAKALGG-G-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLN  306 (406)
T ss_dssp             TTSSSSHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHH
T ss_pred             ccchhHHHHhcCCCCCEE--EechhhcC-C-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence                 1122334456777  57999994 3 568899999998887765443334456777777766666654  34445


Q ss_pred             HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCccc
Q 009523          403 QQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCES  481 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~s  481 (532)
                      +..++++++.+.|++...    .++..          ...++.|.+++|++++.. .....+.+.|...++.+..++   
T Consensus       307 ~~~~~~~~l~~~l~~~~~----~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~---  369 (406)
T 4adb_A          307 GVKQRHDWFVERLNTINH----RYGLF----------SEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG---  369 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHCCE----------EEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS---
T ss_pred             HHHHHHHHHHHHHHHHHH----hCCCc----------eEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC---
Confidence            556677777777765311    00100          011235789999997521 134556666655566554331   


Q ss_pred             ccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          482 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       482 l~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                                              ++.|||+++..    +.+++++.|.++++
T Consensus       370 ------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~  398 (406)
T 4adb_A          370 ------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACE  398 (406)
T ss_dssp             ------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                                    47899976654    34455555555554

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.92  E-value=7.8e-24  Score=219.00  Aligned_cols=280  Identities=12%  Similarity=0.085  Sum_probs=193.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHH---hc---cCC-CEEEEcCCCCcchHHHHHHhccc----C
Q 009523          197 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLA---LV---PAG-GHIVTTTDCYRKTRIFIETVLPK----M  264 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~~Ai~~al~a---ll---~~G-d~VIv~~~~y~~t~~~~~~~l~~----~  264 (532)
                      +|+++...+|+++|++++|. +++++++||++|+.+++..   +.   ++| |+|+++++.|++...........    .
T Consensus        66 ~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~  145 (375)
T 2eh6_A           66 LYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHK  145 (375)
T ss_dssp             TBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred             ccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccC
Confidence            45678889999999999998 7788889999999998865   34   788 99999999998864333222111    1


Q ss_pred             CcE-----EEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          265 GIT-----ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       265 Gv~-----v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                      |..     +..++..|+++|++++++ ++++|++++|+||||.+.|    +++|.++|+++|+++|+|++++....    
T Consensus       146 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  224 (375)
T 2eh6_A          146 GFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF  224 (375)
T ss_dssp             TTCSCCSSEEEECTTCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCceeCCCchHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Confidence            222     566677799999999987 7999999999999999988    99999999999999999999874211    


Q ss_pred             ccccccC--CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009523          332 QKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  409 (532)
Q Consensus       332 ~~~l~~g--aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~  409 (532)
                      ......|  .|++  |+||+++++  ...|++++++++++.++..........++..+..+...++.+....++..++++
T Consensus       225 ~~~~~~~~~~d~~--s~SK~~~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (375)
T 2eh6_A          225 YAYQHFNLKPDVI--ALAKGLGGG--VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGN  300 (375)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGTT--SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCCCEE--EEcccccCC--CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112335  7887  566999863  356888888887776654211122234666666666667665545556667788


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.+.|++.+.. .+                  .+.|.++++.++.+   ...+.+.|...++.+..+            
T Consensus       301 ~l~~~L~~~~~~-~~------------------~~~g~~~~~~~~~~---~~~~~~~l~~~gi~~~~~------------  346 (375)
T 2eh6_A          301 YFKEKLKELGKG-KV------------------KGRGLMLGLELERE---CKDYVLKALEKGLLINCT------------  346 (375)
T ss_dssp             HHHHHHHHTTSS-EE------------------EEETTEEEEECSSC---CHHHHHHHHHTTEECEEE------------
T ss_pred             HHHHHHHHHhcC-Cc------------------eEEEEEEEEEEcCc---HHHHHHHHHHCCCEEecC------------
Confidence            888888875431 11                  12467899998743   223444443335443321            


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                     .++.+||+++....++.++.+.++|+
T Consensus       347 ---------------~~~~iRi~~~~~~~~~~i~~~~~~l~  372 (375)
T 2eh6_A          347 ---------------AGKVLRFLPPLIIQKEHIDRAISVLR  372 (375)
T ss_dssp             ---------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             ---------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                           14789999886555555555555554

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.92  E-value=2e-23  Score=221.21  Aligned_cols=288  Identities=13%  Similarity=0.119  Sum_probs=193.8

Q ss_pred             CCCch-hHHHHHHHHHhhhC----------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcc-cC
Q 009523          197 RYGNP-TTVVVEEKMSALEG----------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KM  264 (532)
Q Consensus       197 R~~~p-~~~~Le~~lA~l~g----------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~-~~  264 (532)
                      +|+.+ ...+|+++|+++++          .++++++++|++|+..++.+++++||+|+++.+.|++...    .+. ..
T Consensus        81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~  156 (435)
T 3piu_A           81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR----DLKWRT  156 (435)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HTTTTT
T ss_pred             ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH----HHHHhc
Confidence            34443 35789999999887          4578888888899999999999999999999999998653    333 56


Q ss_pred             CcEEEEeCCC-------CHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCC
Q 009523          265 GITATVIDPA-------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       265 Gv~v~~vd~~-------dle~Le~al~~-----~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~  329 (532)
                      |.++..++.+       |+++|++++++     .++++|++++|+||||.+.+.   ++|+++|++||+++|+|++|+..
T Consensus       157 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~  236 (435)
T 3piu_A          157 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT  236 (435)
T ss_dssp             CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred             CCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence            8888887643       78999998864     269999999999999999875   67888899999999999997642


Q ss_pred             Cc-----cccc----c---------cCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHH
Q 009523          330 LN-----QKAL----S---------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       330 ~~-----~~~l----~---------~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                      ..     ....    +         .+.++++.|+||.+|.+| ...|++++ ++++.+.++......+  .++.....+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  313 (435)
T 3piu_A          237 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGL--VSSQTQHLL  313 (435)
T ss_dssp             CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSC--CCHHHHHHH
T ss_pred             ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCC--CCHHHHHHH
Confidence            11     1111    1         123388999999997554 45788888 5667777766544332  233333332


Q ss_pred             HHhHH-------HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----HH
Q 009523          391 IRGMK-------TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LT  458 (532)
Q Consensus       391 l~~l~-------tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----~~  458 (532)
                      ...++       .+..+.++..++++++.+.|++. ++. +..+                ..|.++++.++..     ..
T Consensus       314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~g~~~~~~l~~~~~~~~~~  375 (435)
T 3piu_A          314 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GIS-CLNG----------------NAGLFCWVDMRHLLRSNTFE  375 (435)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCE-ECCC----------------CSSSEEEEECGGGSSSSSHH
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-ccCC----------------CeeEEEEEEcccccccCCch
Confidence            22222       12333445556777788888775 342 2111                1356889988642     11


Q ss_pred             HHHHHHHHc-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009523          459 ATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH  530 (532)
Q Consensus       459 ~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e---d~~dli~dL~~AL~  530 (532)
                      ....+.+.| +..++.+..|..+.    +                 ..++.+||+++..   +.++.++.|.++++
T Consensus       376 ~~~~~~~~l~~~~gi~v~~g~~~~----~-----------------~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~  430 (435)
T 3piu_A          376 AEMELWKKIVYEVHLNISPGSSCH----C-----------------TEPGWFRVCFANLPERTLDLAMQRLKAFVG  430 (435)
T ss_dssp             HHHHHHHHHHHTSCEECEEGGGGT----C-----------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCEEEeCCcccC----C-----------------CCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence            344555555 33477776664422    1                 1257999999873   34555666666654

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.92  E-value=2.2e-23  Score=215.55  Aligned_cols=168  Identities=14%  Similarity=0.115  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      +..+++++++++++|.+   +.++ ++||++|+.+++.+++++||+|+++.+.|.+..  +...+...|+++..++.   
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHG  129 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence            56788999999999875   4555 467789999999999999999999998777633  22345566877777653   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK~l  350 (532)
                        .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. .......|+|+++.|+||++
T Consensus       130 ~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l  208 (376)
T 3f0h_A          130 KKLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVL  208 (376)
T ss_dssp             CCCCHHHHHTTTTS-CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTT
T ss_pred             CCCCHHHHHHhhcc-CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccc
Confidence              379999998876 79999999999999999999999999999999999999976543 23333468999999999999


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRN  373 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~  373 (532)
                      +++.+  .|+++.++++++.+..
T Consensus       209 ~~~~G--~g~~~~~~~~~~~~~~  229 (376)
T 3f0h_A          209 ACPPG--ISVIVLAPRGVERVEK  229 (376)
T ss_dssp             CCCSS--CEEEEECHHHHHHHHT
T ss_pred             cCCCc--eEEEEECHHHHHHhhc
Confidence            94432  5788899988887764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.92  E-value=3e-23  Score=216.73  Aligned_cols=290  Identities=13%  Similarity=0.129  Sum_probs=202.5

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc-------cCCCEEEEcCCCCcchHHH-------
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIF-------  256 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all-------~~Gd~VIv~~~~y~~t~~~-------  256 (532)
                      ..|.|+++.++..+++++++++++|.+++++++||++|+..+++.+.       .+||+||+.++.|++....       
T Consensus        68 ~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~  147 (395)
T 3nx3_A           68 LLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTAN  147 (395)
T ss_dssp             CSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCC
T ss_pred             ccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCC
Confidence            34667778899999999999999998889999999999999998765       3579999999999875321       


Q ss_pred             --HHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC-
Q 009523          257 --IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-  329 (532)
Q Consensus       257 --~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~-  329 (532)
                        +...+...+.++..++.+|+++|++++++ ++++|++++++|++|.+.+    +++|.++|++||+++|+||++... 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g  226 (395)
T 3nx3_A          148 EKYQKPFKPLISGVKFAKYNDISSVEKLVNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMG  226 (395)
T ss_dssp             HHHHGGGCSCCSCEEEECTTCHHHHHTTCCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cccccccCCCCCCcEEeCCCCHHHHHHhccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence              11223344567778888899999999986 7999999999999999987    999999999999999999997632 


Q ss_pred             -----CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHH-HHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHH
Q 009523          330 -----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRV  401 (532)
Q Consensus       330 -----~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l-i~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~  401 (532)
                           ..........|++  |++|.+++ | ...|++++++++ ++.++..........++..+..+...++.+.  ...
T Consensus       227 ~~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~  302 (395)
T 3nx3_A          227 RSGKFFAYEHAQILPDIM--TSAKALGC-G-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKIL  302 (395)
T ss_dssp             TTSSSSGGGGGTCCCSEE--EECGGGTT-T-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred             cCCcchhHHhcCCCCCEE--EecccccC-C-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHH
Confidence                 1122333445666  47799986 3 467899999988 7776543322233456777776666666442  223


Q ss_pred             HHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009523          402 QQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      ++..++.+++.+.|++    +|.+..+                  ++.|.+++|++++. .....+.+.|...++.++.|
T Consensus       303 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~  363 (395)
T 3nx3_A          303 ENVNKLTPYLEQSLDELINEFDFCKKR------------------KGLGFMQGLSLDKS-VKVAKVIQKCQENALLLISC  363 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EeEEEEEEEEeCCc-chHHHHHHHHHHCCCEEecC
Confidence            4444555555555543    3433221                  23578999999753 23456666665556554432


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA  531 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~~  531 (532)
                                                 .++.|||+++..    +.+++++.|++++++
T Consensus       364 ---------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          364 ---------------------------GENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             ---------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                                       147899987664    345555566665543

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.92  E-value=1.2e-22  Score=207.90  Aligned_cols=277  Identities=17%  Similarity=0.164  Sum_probs=187.9

Q ss_pred             CchhHHHHHHHHHhhhCCCc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC--CcEEEEeCCC-
Q 009523          199 GNPTTVVVEEKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPA-  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~--Gv~v~~vd~~-  274 (532)
                      ..+..+++++++++++|.+. .+++++|++|+.+++.+++++||+|+++.+.|.++...  ..+...  |.++..++.+ 
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  118 (356)
T 1v72_A           41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPA  118 (356)
T ss_dssp             CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGG
T ss_pred             cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCC
Confidence            46788999999999999655 57889999999999999999999999999988765422  013334  7888888754 


Q ss_pred             ---CHHHHHH-hhcCC------CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCC------Cccccc
Q 009523          275 ---DMEGLEA-ALNNN------NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------LNQKAL  335 (532)
Q Consensus       275 ---dle~Le~-al~~~------~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~------~~~~~l  335 (532)
                         |+++|++ ++++.      ++++|++++|+| ||.+.+   +++|.++|++||+++|+|+++..+      ......
T Consensus       119 ~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~  197 (356)
T 1v72_A          119 AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM  197 (356)
T ss_dssp             GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT
T ss_pred             CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh
Confidence               7999999 88752      589999999987 999554   788999999999999999997531      111111


Q ss_pred             --ccCCcEEEECCccccCCCCCcEE-EEEEeChHHHHHHHHHhhhcCCCcc--HHHHHHHHHhHHH--HHHHHHHHHHHH
Q 009523          336 --SLGADLVLHSATKFIGGHNDVLA-GSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKT--LHLRVQQQNSTA  408 (532)
Q Consensus       336 --~~gaDivv~S~sK~lgg~gd~~g-G~lv~~~~li~~l~~~~~~~G~~~~--~~~a~l~l~~l~t--l~~r~~~~~~~a  408 (532)
                        ..++|+++.|+||+ +++   .| |++++++++++.++......|....  ...+..+.+.++.  +....++..+++
T Consensus       198 ~~~~~~d~~~~s~sK~-g~~---~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  273 (356)
T 1v72_A          198 TWKAGVDALSFGATKN-GVL---AAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAA  273 (356)
T ss_dssp             TGGGTCCEEEECCGGG-TCS---SCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEecccC-CCc---CccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              23689999999999 432   34 7888898888887665443332222  2222212222221  223345566778


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI  488 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~  488 (532)
                      +++.+.|++.+++..+ .|.                .++++++.++.      .+.+.|...++.+..|..         
T Consensus       274 ~~l~~~L~~~~g~~~~-~~~----------------~~~~~~~~~~~------~~~~~l~~~gi~v~~g~~---------  321 (356)
T 1v72_A          274 QRLAQGLEGLGGVEVL-GGT----------------EANILFCRLDS------AMIDALLKAGFGFYHDRW---------  321 (356)
T ss_dssp             HHHHHHHTTCTTEEEE-SCC----------------CSSEEEEEECH------HHHHHHHHTTCBCBCSSS---------
T ss_pred             HHHHHHHhhCCCcEEc-cCC----------------CccEEEEEcCH------HHHHHHHhcCeEEecccc---------
Confidence            8888888877766432 332                35678888852      344444434555554420         


Q ss_pred             ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          489 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       489 ~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                    +  ++.+||+++...+++.++.+.++|+
T Consensus       322 --------------~--~~~iRi~~~~~~~~~~i~~~~~~l~  347 (356)
T 1v72_A          322 --------------G--PNVVRFVTSFATTAEDVDHLLNQVR  347 (356)
T ss_dssp             --------------S--TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             --------------C--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence                          1  4689999987655444455544443

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.92  E-value=3.6e-23  Score=217.13  Aligned_cols=294  Identities=12%  Similarity=0.078  Sum_probs=192.1

Q ss_pred             hhHHHHHHHHHhhh------CC--CcEEEeCCHHHHHHHHHHHhccCCC-----EEEEc-CCCCcchHHHHHH--hcccC
Q 009523          201 PTTVVVEEKMSALE------GA--ESTVIMASGMSASTVMLLALVPAGG-----HIVTT-TDCYRKTRIFIET--VLPKM  264 (532)
Q Consensus       201 p~~~~Le~~lA~l~------ga--~~~i~~sSG~~Ai~~al~all~~Gd-----~VIv~-~~~y~~t~~~~~~--~l~~~  264 (532)
                      ....+|++++|+++      +.  ++++++++|++|+.+++.+++++||     +|+++ .|+|++.......  .....
T Consensus        75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~  154 (417)
T 3g7q_A           75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA  154 (417)
T ss_dssp             TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence            45678899999886      22  5788888888999999999999988     99997 9999875433211  12334


Q ss_pred             CcEEEEeCC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          265 GITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       265 Gv~v~~vd~------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                      +..+..++.      .|+++|+  +++ ++++|++++|+||||.+++   +++|+++|++||+++|+|++|+.++.    
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~  231 (417)
T 3g7q_A          155 RPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIF  231 (417)
T ss_dssp             CCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBC
T ss_pred             cCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccc
Confidence            555655543      2788887  555 6999999999999999999   88899999999999999999875321    


Q ss_pred             --ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHH-HHH
Q 009523          332 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQ  402 (532)
Q Consensus       332 --~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t------l~~-r~~  402 (532)
                        ..+...+.++++.|+||+ +++| ...|++++++++++.++......+...++..+.++...++.      +.. ..+
T Consensus       232 ~~~~~~~~~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  309 (417)
T 3g7q_A          232 SEARPLWNPNIILCMSLSKL-GLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKP  309 (417)
T ss_dssp             SCCCCCCCTTEEEEEESGGG-TCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHH
T ss_pred             cccccCCCCCEEEEEechhc-cCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHH
Confidence              112234678999999995 5554 46789999999999988776655554555555444444432      111 122


Q ss_pred             HHHHHHHHHHHHHHh-CCCc-eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          403 QQNSTALRMAKILEA-HPKV-KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       403 ~~~~~a~~la~~L~~-~p~v-~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      ...++.+.+.+.|++ .+.+ ..+..|.                .|.++++.++........+.+.|...++.+..|..+
T Consensus       310 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f  373 (417)
T 3g7q_A          310 FYYQRVQQTIAIIRRYLSEERCLIHKPE----------------GAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF  373 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTTCEEECCC----------------BSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHhcccCCceeeCCC----------------cceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhh
Confidence            334566677777766 3432 1233332                467889998741123445566665568888877654


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~  530 (532)
                      .......              .+..++.||||++. +.   ++.++.|.++++
T Consensus       374 ~~~~~~~--------------~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~  411 (417)
T 3g7q_A          374 FPGLDKP--------------WPHTHQCMRMNYVP-EPDKIEAGVKILAEEIE  411 (417)
T ss_dssp             CTTBSSC--------------CGGGGGEEEEESCS-CHHHHHHHHHHHHHHHH
T ss_pred             CCCCccc--------------cccCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence            3110000              00114799999997 43   344555555554

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.92  E-value=3e-23  Score=219.10  Aligned_cols=307  Identities=16%  Similarity=0.166  Sum_probs=188.4

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcc-------------hHHH
Q 009523          200 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRK-------------TRIF  256 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all--------~~Gd~VIv~~~~y~~-------------t~~~  256 (532)
                      .+..+++++++++++|.+  +++++++|++|+.+++.+++        ++||+|++..|.|++             +...
T Consensus        60 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~  139 (432)
T 3a9z_A           60 KDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLP  139 (432)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHH
Confidence            345689999999999974  57777777899999998886        589877777766654             3333


Q ss_pred             HHHhcccCCcEEEEeCC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC----------CEE
Q 009523          257 IETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----------AIV  320 (532)
Q Consensus       257 ~~~~l~~~Gv~v~~vd~------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~g----------i~l  320 (532)
                      +....+..|.++..++.      .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|          +++
T Consensus       140 ~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~l  218 (432)
T 3a9z_A          140 LEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLV  218 (432)
T ss_dssp             HHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred             HHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEE
Confidence            33444556888888874      378999999987 7999999999999999999999999999999          999


Q ss_pred             EEECCCCCCCc-ccccccCCcEEEECCccccCCCCCcEEEEEEeChHH-HHHHHHH-------hhhcCCCccHHHHHHHH
Q 009523          321 CIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNL-------HHVLGGALNPNAAYLII  391 (532)
Q Consensus       321 IvDet~a~~~~-~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l-i~~l~~~-------~~~~G~~~~~~~a~l~l  391 (532)
                      |+|++|+.+.. .+....++|+++.|+||++| +  . +|+++++++. ...++..       .....++.++...+.+.
T Consensus       219 ivDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  294 (432)
T 3a9z_A          219 HTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--R-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLG  294 (432)
T ss_dssp             EEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--S-CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHH
T ss_pred             EEEchhhhCCcccChhhcCCCEEEEehhHhcC-C--c-ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHH
Confidence            99999876532 23334578999999999886 3  2 6888887754 2222211       11112334554444443


Q ss_pred             HhHHHH----HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc
Q 009523          392 RGMKTL----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL  467 (532)
Q Consensus       392 ~~l~tl----~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L  467 (532)
                      .+++.+    ....++..++++++.+.|++.+++. +.+++..  ++       ....+++++|.+++.......+++.+
T Consensus       295 aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l  364 (432)
T 3a9z_A          295 KAADLVSENCETYEAHMRDIRDYLEERLEAEFGKR-IHLNSRF--PG-------VERLPNTCNFSIQGSQLRGYMVLAQC  364 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-EEESSCC--TT-------CCBCTTEEEEEECSTTCCHHHHHHHC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCc-EEEeCCC--Cc-------ccCCCCEEEEEeCCCCCcHHHHHHHh
Confidence            444433    3334445566777777777654332 2211110  00       01246688999875111234566666


Q ss_pred             CCCceeecCCCcccccccCccccccCCCHHHHHhcCCC----CCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          468 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM----DNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       468 ~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~----~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                      .  ++.+..|..++..       +...+.......|+.    ++.||||++..    +.+.+++.|+++++
T Consensus       365 ~--~i~~~~G~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~  426 (432)
T 3a9z_A          365 Q--TLLASVGASCHSD-------HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN  426 (432)
T ss_dssp             S--SEECBSSCGGGGG-------GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             c--CeEEeccccccCC-------CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            4  6677776543211       000111233345553    48999999964    34555555555554

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.91  E-value=1.1e-22  Score=214.32  Aligned_cols=211  Identities=14%  Similarity=0.156  Sum_probs=164.1

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----  274 (532)
                      +..+++++.+++++|.++.++++||++|+..++.++ +++||+|+++.++|.++...    +...|.+++.++.+     
T Consensus        42 ~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~  117 (418)
T 2c81_A           42 SMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATA----VLNVNALPVFVDVEADTYC  117 (418)
T ss_dssp             CHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCS
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHH----HHHcCCEEEEEecCCCCCC
Confidence            348899999999999988999999999999999999 89999999999999987643    34568888887643     


Q ss_pred             -CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc--cccccCCcEEEECC--ccc
Q 009523          275 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSA--TKF  349 (532)
Q Consensus       275 -dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~--~~l~~gaDivv~S~--sK~  349 (532)
                       |+++|++++++ ++++|++   +||+|.+.|+++|.++|+++|+++|+|++++.+...  .+...-.|+++.|+  ||+
T Consensus       118 ~d~~~l~~~i~~-~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~  193 (418)
T 2c81_A          118 IDPQLIKSAITD-KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKV  193 (418)
T ss_dssp             BCHHHHGGGCCT-TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cCHHHHHHhhCC-CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcc
Confidence             79999999987 7999986   468999999999999999999999999998876422  22222247888887  999


Q ss_pred             cCCCCCcEEEEEEeC-hHHHHHHHHHhhh--------------cC------------CCccHHHHHHHHHhHHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGS-GKLVTQIRNLHHV--------------LG------------GALNPNAAYLIIRGMKTLHLRVQ  402 (532)
Q Consensus       350 lgg~gd~~gG~lv~~-~~li~~l~~~~~~--------------~G------------~~~~~~~a~l~l~~l~tl~~r~~  402 (532)
                      +++ |  .+|+++++ +++++.++.....              +.            ..+.+..+.+....++.+..+.+
T Consensus       194 ~~~-g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~  270 (418)
T 2c81_A          194 LTA-G--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNA  270 (418)
T ss_dssp             SCS-S--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHH
T ss_pred             cCC-C--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            998 5  47898884 6787777653321              10            01344555555555666667777


Q ss_pred             HHHHHHHHHHHHHHhCCCce
Q 009523          403 QQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~p~v~  422 (532)
                      +..++++++.+.|.+.|++.
T Consensus       271 ~~~~~~~~l~~~L~~~~g~~  290 (418)
T 2c81_A          271 IREKNAMFLNDALSKIDGIK  290 (418)
T ss_dssp             HHHHHHHHHHHHHTTSTTEE
T ss_pred             HHHHHHHHHHHHhccCCCcc
Confidence            77788889999998877654

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.91  E-value=1.4e-22  Score=219.53  Aligned_cols=287  Identities=13%  Similarity=0.055  Sum_probs=191.5

Q ss_pred             hHHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~----g----a~~~i~~sSG~~Ai~~al~all-~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ....|++++++++    |    .++++++++|++|+..++.+++ ++||+|+++.|.|.+...    .+...|.++..++
T Consensus       135 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~  210 (500)
T 3tcm_A          135 GIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSA----SIALHGGALVPYY  210 (500)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred             ChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHH----HHHHcCCEEEEEe
Confidence            3556777777765    2    2567888888899999999998 899999999999987554    3445677777765


Q ss_pred             -------CCCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----
Q 009523          273 -------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  332 (532)
Q Consensus       273 -------~~dle~Le~al~~~-----~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----  332 (532)
                             ..|+++|++++++.     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......     
T Consensus       211 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~  290 (500)
T 3tcm_A          211 LNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKF  290 (500)
T ss_dssp             CBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCC
T ss_pred             cccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCC
Confidence                   34899999998752     5899999999999999987   556777799999999999998764321     


Q ss_pred             ccc-----cc------CCcEEEECCcccc-CCCCCcEEEEEEe---ChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---
Q 009523          333 KAL-----SL------GADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---  394 (532)
Q Consensus       333 ~~l-----~~------gaDivv~S~sK~l-gg~gd~~gG~lv~---~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l---  394 (532)
                      .++     ..      ...++++|+||.+ |..| .++|++++   ++++++.+...... ..+.+....+++...+   
T Consensus       291 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~  368 (500)
T 3tcm_A          291 HSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILASLVMNPP  368 (500)
T ss_dssp             CCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHHHHHHSCC
T ss_pred             CcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHhcCc
Confidence            110     11      1137788999999 4333 56888887   88898888776542 3334444443333222   


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH----
Q 009523          395 -----------KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA----  459 (532)
Q Consensus       395 -----------~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~----  459 (532)
                                 +.+....++..++++.+.+.|++.|++. +..|.                .|.++++.+.-....    
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~-~~~~~----------------g~~~~~~~~~lp~~~~~~~  431 (500)
T 3tcm_A          369 KASDESYASYKAEKDGILASLARRAKALEHAFNKLEGIT-CNEAE----------------GAMYVFPQICLPQKAIEAA  431 (500)
T ss_dssp             CSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE-CCCCC----------------BTTEECCEECCCHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EecCC----------------eEEEEeeeecCchhhHHHH
Confidence                       3344455666788888999998877653 22221                233455444321110    


Q ss_pred             -------HHH-HHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHH
Q 009523          460 -------TIK-FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQAL  529 (532)
Q Consensus       460 -------~~~-~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL  529 (532)
                             ... +.+.|+..++.+..|..+..   +                 ...+++|+|++.  ++.++.++.|.+++
T Consensus       432 ~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~---~-----------------~g~~~iRis~~~~~e~i~~~i~~l~~~~  491 (500)
T 3tcm_A          432 KAANKAPDAFYALRLLESTGIVVVPGSGFGQ---V-----------------PGTWHFRCTILPQEDKIPAVISRFTVFH  491 (500)
T ss_dssp             HHHTSCHHHHHHHHHHHHHCEECEESTTTCC---C-----------------TTCCBEEEESCSCTTTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHCCEEEEeCcccCC---C-----------------CCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence                   111 22344445777777755421   0                 125689999994  45677788887776


Q ss_pred             hh
Q 009523          530 HA  531 (532)
Q Consensus       530 ~~  531 (532)
                      ++
T Consensus       492 ~~  493 (500)
T 3tcm_A          492 EA  493 (500)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.91  E-value=5.2e-23  Score=217.46  Aligned_cols=292  Identities=12%  Similarity=0.074  Sum_probs=192.5

Q ss_pred             CCCchh-HHHHHHHHHhhhCCC--cEEEeCCHHHHH--HHHHHHhccC------------CCEEEEcCCCCcchHHHHHH
Q 009523          197 RYGNPT-TVVVEEKMSALEGAE--STVIMASGMSAS--TVMLLALVPA------------GGHIVTTTDCYRKTRIFIET  259 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~ga~--~~i~~sSG~~Ai--~~al~all~~------------Gd~VIv~~~~y~~t~~~~~~  259 (532)
                      +|+.+. ..+|++++|++++.+  +.++++++++++  .+++..+.++            ||+|+++.|+|.+....   
T Consensus        71 ~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~---  147 (422)
T 3d6k_A           71 NYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTI---  147 (422)
T ss_dssp             SSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH---
T ss_pred             CCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHH---
Confidence            455544 788999999999873  455555556786  5666777666            34899999999886543   


Q ss_pred             hcccCCcEEEEeCC----CCHHHHHHhhcCCCeeEEE-EeCCCCCCCcccCHH---HHHHHHH-hCCCEEEEECCCCC-C
Q 009523          260 VLPKMGITATVIDP----ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFAT-P  329 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~----~dle~Le~al~~~~tklV~-lesP~NptG~v~dl~---~I~~la~-~~gi~lIvDet~a~-~  329 (532)
                       ++..|.++..++.    .|+++|++++++.++++|+ +++|+||||.+++.+   +|+++|+ ++|+++|+|++|.. .
T Consensus       148 -~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~  226 (422)
T 3d6k_A          148 -TEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT  226 (422)
T ss_dssp             -HHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred             -HHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence             3445777777654    3799999999754689998 689999999999976   7777788 89999999999863 1


Q ss_pred             Cc-----cccc--------ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH
Q 009523          330 LN-----QKAL--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT  396 (532)
Q Consensus       330 ~~-----~~~l--------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t  396 (532)
                      +.     ..++        ..+.++++.|+||+ +++| ...|++++++++++.+.......+...++..+..+...++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~  304 (422)
T 3d6k_A          227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGD  304 (422)
T ss_dssp             SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCS
T ss_pred             cCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhC
Confidence            11     1111        23568999999998 4444 45899999999999888776665555666665555544432


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHhC-CCc--eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009523          397 -------LHLRVQQQNSTALRMAKILEAH-PKV--KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA  466 (532)
Q Consensus       397 -------l~~r~~~~~~~a~~la~~L~~~-p~v--~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~  466 (532)
                             +....+...++.+.+.+.|.+. +..  ..+..|.                .|.++++.+++.  ....+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~  366 (422)
T 3d6k_A          305 VAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT----------------GGYFISVDVVPG--TASRVVEL  366 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS----------------BSSCEEEEESTT--CHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC----------------cceEEEEECCCC--CHHHHHHH
Confidence                   2222233334556666666542 211  1222332                466889999753  23345555


Q ss_pred             cCCCceeecCCCc-ccccccCccccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHh
Q 009523          467 LKIPYIAPSFGGC-ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH  530 (532)
Q Consensus       467 L~~~~i~vs~G~~-~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~---ed~~dli~dL~~AL~  530 (532)
                      +...++.+..|+. +...  +                .-.+++||||++.   ++.++.++.|.++++
T Consensus       367 l~~~gV~v~~~g~~f~~~--~----------------~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~  416 (422)
T 3d6k_A          367 AKEAGIALTGAGSSFPLH--N----------------DPNNENIRLAPSLPPVAELEVAMDGFATCVL  416 (422)
T ss_dssp             HHHTTEECCCTTTTSGGG--C----------------CTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCeEEEcCccccCCC--C----------------CCCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            5556888877432 2100  0                0125789999995   334555666666554

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.91  E-value=9e-23  Score=213.97  Aligned_cols=252  Identities=17%  Similarity=0.172  Sum_probs=173.9

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc------cCCCE-EEEcCCCCcchHHHHHHhcccC--CcEE
Q 009523          200 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGH-IVTTTDCYRKTRIFIETVLPKM--GITA  268 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all------~~Gd~-VIv~~~~y~~t~~~~~~~l~~~--Gv~v  268 (532)
                      .+..+++++++++++|.+  +++++++|++++..++.+++      ++||+ |+++.+.|+++...+....+..  |.++
T Consensus        70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~  149 (416)
T 1qz9_A           70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL  149 (416)
T ss_dssp             GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred             HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceE
Confidence            367789999999999974  67777788899988888776      89997 5555667776654443333333  8899


Q ss_pred             EEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-ccccccCCcEEEECCc
Q 009523          269 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  347 (532)
Q Consensus       269 ~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l~~gaDivv~S~s  347 (532)
                      ..++.  +++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|+|
T Consensus       150 ~~v~~--~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~  226 (416)
T 1qz9_A          150 RLVDS--PEELPQAIDQ-DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTY  226 (416)
T ss_dssp             EEESS--GGGHHHHCST-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred             EEeCc--HHHHHHHhCC-CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCc
Confidence            88887  8999999987 799999999999999999999999999999999999999875422 2222457899999999


Q ss_pred             cccCCCCCcEE-EEEEeChHHHHHHHHHh-----------------------hhcCCCccHHHHHHHHHhHHHH-----H
Q 009523          348 KFIGGHNDVLA-GSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMKTL-----H  398 (532)
Q Consensus       348 K~lgg~gd~~g-G~lv~~~~li~~l~~~~-----------------------~~~G~~~~~~~a~l~l~~l~tl-----~  398 (532)
                      |+++++.  .+ |++++++++++.++...                       ....++.++.....+...++.+     .
T Consensus       227 K~l~~g~--~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  304 (416)
T 1qz9_A          227 KYLNGGP--GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMA  304 (416)
T ss_dssp             STTCCCT--TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccCCCCC--CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence            9975332  24 88888887766554311                       1112234444444333344432     3


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-C--CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          399 LRVQQQNSTALRMAKILEAH-P--KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~-p--~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                      ...++..++++++.+.|++. |  ++. +..|.-   +         ...+++++|.+++    ...+.+.|...++.
T Consensus       305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~-~~~~~~---~---------~~~~~~~~~~~~~----~~~l~~~l~~~gi~  365 (416)
T 1qz9_A          305 SLRRKSLALTDLFIELVEQRCAAHELT-LVTPRE---H---------AKRGSHVSFEHPE----GYAVIQALIDRGVI  365 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCE-ECSCSS---G---------GGBCSEEEEECTT----HHHHHHHHHTTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCeE-EeCCCC---H---------HHcCCEEEEecCC----HHHHHHHHHhCCcE
Confidence            44566667788888888774 5  443 322210   0         0135689998863    34555565544544

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.91  E-value=1.1e-22  Score=207.88  Aligned_cols=265  Identities=13%  Similarity=0.141  Sum_probs=187.3

Q ss_pred             CCCchhHHHHHHHHHhhhC---C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          197 RYGNPTTVVVEEKMSALEG---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g---a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +|+++...++++++|++++   .  ++.+++++|++++..++.++   ||+|+++ |+|++...    .++..|.++..+
T Consensus        52 ~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~----~~~~~g~~~~~v  123 (335)
T 1uu1_A           52 IYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRI----FAKAVGAKFLEV  123 (335)
T ss_dssp             SCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHH----HHHHHTCEEEEC
T ss_pred             cCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHH----HHHHcCCeEEEe
Confidence            3455557899999999998   4  46777777789999999887   8999999 99988653    344568888877


Q ss_pred             CCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc---ccc-cccCCcEE
Q 009523          272 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKA-LSLGADLV  342 (532)
Q Consensus       272 d~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~---~~~-l~~gaDiv  342 (532)
                      +.+     |+++|     + ++++|++++|+||||.+.|.+++.++++..| ++|+|++|.....   ... ...+.+++
T Consensus       124 ~~~~~~~~d~~~l-----~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~  196 (335)
T 1uu1_A          124 PLTKDLRIPEVNV-----G-EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAV  196 (335)
T ss_dssp             CCCTTSCCCCCCC-----C-TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEE
T ss_pred             ccCCCCCCCHHHc-----C-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEE
Confidence            643     34444     3 6899999999999999999999999999889 9999999763211   111 12457899


Q ss_pred             EECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhCC
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t---l~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      +.|+||++|.+| ...|++++++++++.++.....+  +.++..++.+...++.   +..+.++..++++++.+.|+++ 
T Consensus       197 ~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-  272 (335)
T 1uu1_A          197 IRTFSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPF--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-  272 (335)
T ss_dssp             EEESTTTTTCGG-GCCEEEEECHHHHHHHHHHSCTT--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EecchhhcCCcc-cCeEEEEeCHHHHHHHHHhcCCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            999999998554 45799999999998887765433  4566655555555543   4445566667788888888775 


Q ss_pred             CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHH
Q 009523          420 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER  499 (532)
Q Consensus       420 ~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~  499 (532)
                      ++. + +|.                .|+++++.+++  .....+.+.|...++.+..                       
T Consensus       273 g~~-~-~~~----------------~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~-----------------------  309 (335)
T 1uu1_A          273 GYR-I-TDS----------------RGNFVFVFMEK--EEKERLLEHLRTKNVAVRS-----------------------  309 (335)
T ss_dssp             TCC-B-CCC----------------CSSEEEEECCT--HHHHHHHHHHHHHTEEEEE-----------------------
T ss_pred             CcE-E-cCC----------------CCeEEEEECCC--CCHHHHHHHHHHCCEEEEE-----------------------
Confidence            332 2 221                35688898864  3445566665544554432                       


Q ss_pred             HhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          500 LKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       500 ~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                           .++.+|||++.+  + .++.+.++|++
T Consensus       310 -----~~~~iRis~~~~--~-~i~~~~~~l~~  333 (335)
T 1uu1_A          310 -----FREGVRITIGKR--E-ENDMILRELEV  333 (335)
T ss_dssp             -----ETTEEEEECCCH--H-HHHHHHHHHHC
T ss_pred             -----CCCeEEEEeCCH--H-HHHHHHHHHHh
Confidence                 146899999852  3 35666666654

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.91  E-value=3.6e-23  Score=221.43  Aligned_cols=284  Identities=11%  Similarity=0.088  Sum_probs=190.2

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCE---EEEcCCCCcchHHHHHHhcccCCcEE-----EE
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGH---IVTTTDCYRKTRIFIETVLPKMGITA-----TV  270 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~---VIv~~~~y~~t~~~~~~~l~~~Gv~v-----~~  270 (532)
                      +..+++++++++++|++  ++++++++++++.+++.+++++||.   |+++.++|++....+...++..|+++     ..
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~  190 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI  190 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence            45678999999999974  5777777789999999999877655   99999999987765655566667653     23


Q ss_pred             eCC-----CCHHHHHHhhc---CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcE
Q 009523          271 IDP-----ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADL  341 (532)
Q Consensus       271 vd~-----~dle~Le~al~---~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDi  341 (532)
                      .+.     .|+++|+++++   + ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. ..+..++++|+
T Consensus       191 ~~~~~~~~~d~~~l~~~i~~~~~-~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~  269 (465)
T 3e9k_A          191 KPREGEETLRIEDILEVIEKEGD-SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDF  269 (465)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHGG-GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCE
T ss_pred             ecCCCCCccCHHHHHHHHHhcCC-CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCE
Confidence            322     27999999996   4 69999999999999999999999999999999999999987653 23444578999


Q ss_pred             EEECCccccC-CCCCcEEEEEEeChHHHHHHHHHh-------------------------hhcCCCccHHHHHHHHHhHH
Q 009523          342 VLHSATKFIG-GHNDVLAGSISGSGKLVTQIRNLH-------------------------HVLGGALNPNAAYLIIRGMK  395 (532)
Q Consensus       342 vv~S~sK~lg-g~gd~~gG~lv~~~~li~~l~~~~-------------------------~~~G~~~~~~~a~l~l~~l~  395 (532)
                      ++.|++|+++ |++  ..|+++.++++++.+....                         ....++.+......+..+++
T Consensus       270 ~~~s~~K~l~~gp~--~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~  347 (465)
T 3e9k_A          270 ACWCSYKYLNAGAG--GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE  347 (465)
T ss_dssp             EEECSSSTTCCCTT--CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred             EEECcccccccCCC--ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence            9999999994 443  2366777777765443110                         00012344444444444444


Q ss_pred             HH-----HHHHHHHHHHHHHHHHHHHhC----------CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          396 TL-----HLRVQQQNSTALRMAKILEAH----------PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       396 tl-----~~r~~~~~~~a~~la~~L~~~----------p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      .+     ....++..++++++.+.|+++          +++. +..|.   .+         .+.|++++|.++.+   .
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~-~~~p~---~~---------~~~g~~~~~~~~~~---~  411 (465)
T 3e9k_A          348 IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN-IITPS---HV---------EERGCQLTITFSVP---N  411 (465)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE-ECSCS---SG---------GGBCSCEEEEECCT---T
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE-EeCCC---CH---------hhcccEEEEEecCC---H
Confidence            32     333445556677777777764          3332 22221   01         12478999998732   2


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cCCCH----HHHHHHHHHHHh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVEDF----EDLKADVLQALH  530 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~ed~----~dli~dL~~AL~  530 (532)
                      ..+.+.|...++.+.++                           .++.||||+ +..+.    +++++.|+++++
T Consensus       412 ~~l~~~L~~~Gi~v~~~---------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~  459 (465)
T 3e9k_A          412 KDVFQELEKRGVVCDKR---------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILD  459 (465)
T ss_dssp             CCHHHHHHTTTEECEEE---------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCEEEecC---------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence            23444444445554311                           247899998 55544    444555555543

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.91  E-value=3.2e-22  Score=208.80  Aligned_cols=302  Identities=15%  Similarity=0.133  Sum_probs=206.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-------ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-------l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ..+...++|+++|+++|.+++++++||++|+..++.++       +++||+|+++.++|+++...+    ...|.+++++
T Consensus        32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~  107 (390)
T 3b8x_A           32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFV  107 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence            47889999999999999999999999999999999998       789999999999999876543    3468888887


Q ss_pred             CCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCC--cEEE
Q 009523          272 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVL  343 (532)
Q Consensus       272 d~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~ga--Divv  343 (532)
                      +.+      |+++|++++++ ++++|+++   |++|...|+++|.++|+++|+++|+|++++.+...+....|.  |+.+
T Consensus       108 ~~~~~~~~~d~~~l~~~i~~-~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~  183 (390)
T 3b8x_A          108 DIDINTLNIDIESLKEAVTD-STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT  183 (390)
T ss_dssp             CBCTTTCSBCHHHHHHHCCT-TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred             ecCccccCcCHHHHHHHhCc-CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence            653      89999999987 79999996   356777999999999999999999999998654434444565  5555


Q ss_pred             ECC--ccccCCCCCcEEEEEEeCh-HHHHHHHHHhhh-----------------------------cCC--CccHHHHHH
Q 009523          344 HSA--TKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----------------------------LGG--ALNPNAAYL  389 (532)
Q Consensus       344 ~S~--sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~-----------------------------~G~--~~~~~~a~l  389 (532)
                      .|+  +|.++++   .||++++++ ++.++++.....                             .|.  .+++..+++
T Consensus       184 ~s~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~  260 (390)
T 3b8x_A          184 FSSFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI  260 (390)
T ss_dssp             EECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred             EEccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence            442  3444332   368888876 666666543210                             111  156777777


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcC
Q 009523          390 IIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALK  468 (532)
Q Consensus       390 ~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~  468 (532)
                      ++..++.+..+.++..++++++.+.|++.|++. +..+.  .           .....++++.++.. ......+.+.|.
T Consensus       261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--~-----------~~~~~~~~i~~~~~~~~~~~~l~~~L~  326 (390)
T 3b8x_A          261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLD-VQQET--G-----------ESSWFGFSFIIKKDSGVIRKQLVENLN  326 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE-ECCCC--S-----------BCCCCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cCCCC--C-----------CcccEEEEEEecCcCcccHHHHHHHHH
Confidence            777788888888888899999999998877653 22111  0           01123466666620 012344555554


Q ss_pred             CCceeecCCCccccccc-Cccc--cc---cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          469 IPYIAPSFGGCESIVDQ-PAIM--SY---WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       469 ~~~i~vs~G~~~sl~~~-pa~~--s~---~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      ..++.++.+-.-+...+ |...  .|   ..++..+..    ..+.|||+++...+++.++.+.++|
T Consensus       327 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          327 SAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL----DKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH----HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             HCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH----hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence            45666664210111112 2211  11   112221111    2468999999998888888887776

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.90  E-value=4.8e-23  Score=214.98  Aligned_cols=283  Identities=15%  Similarity=0.141  Sum_probs=189.2

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcc---------c
Q 009523          197 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---------K  263 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~---------~  263 (532)
                      .|..+..++++++++++++  .+++++++||++|+.+++.++.  .+||+||+.++.|++..........         .
T Consensus        83 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p  162 (395)
T 1vef_A           83 TLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLP  162 (395)
T ss_dssp             TSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCS
T ss_pred             ccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCC
Confidence            3578899999999999995  4567888999999999998764  6899999999999764322111111         1


Q ss_pred             CCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc------cc
Q 009523          264 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QK  333 (532)
Q Consensus       264 ~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~------~~  333 (532)
                      ...++..++..|+++|++++++ ++++|++++++||||.+.|    +++|.++|+++|+++|+|++++....      .+
T Consensus       163 ~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~  241 (395)
T 1vef_A          163 LVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFE  241 (395)
T ss_dssp             CSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred             CCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhh
Confidence            1112555666799999999987 7999999888899999988    99999999999999999999873211      12


Q ss_pred             ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHH
Q 009523          334 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRM  411 (532)
Q Consensus       334 ~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~l  411 (532)
                      ....++|++  |+||++++ | ...|++++++++++.++..........++..++.+...++.+..  ..++..++++++
T Consensus       242 ~~~~~~d~~--s~sK~~~~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l  317 (395)
T 1vef_A          242 HFGIVPDIL--TLAKALGG-G-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF  317 (395)
T ss_dssp             HHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hcCCCCCEE--EEcccccC-C-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            234457877  78999997 4 34688888887777664421122233566666666666665432  344555677777


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccccccCcccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      .+.|++.+.      |.+.          ...+.|+++++.++++   ...+.+.|. ..++.+..+             
T Consensus       318 ~~~l~~~~~------~~~~----------~~~~~g~~~~~~~~~~---~~~l~~~l~~~~gi~v~~~-------------  365 (395)
T 1vef_A          318 MEKLRAIPS------PKIR----------EVRGMGLMVGLELKEK---AAPYIARLEKEHRVLALQA-------------  365 (395)
T ss_dssp             HHHHHTSCC------TTEE----------EEEEETTEEEEEESSC---SHHHHHHHHHHHCEECEES-------------
T ss_pred             HHHHHHhhc------CceE----------EEEEEEEEEEEEEcCh---HHHHHHHHHHHCCeEEecC-------------
Confidence            778876532      1000          0112467999999753   233444443 335544432             


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                    .++.|||+++....++.++.+.++|+
T Consensus       366 --------------~~~~iRi~~~~~~~~~~i~~~~~~l~  391 (395)
T 1vef_A          366 --------------GPTVIRFLPPLVIEKEDLERVVEAVR  391 (395)
T ss_dssp             --------------STTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             --------------CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence                          14789999886544444444444443

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.90  E-value=5e-23  Score=218.91  Aligned_cols=283  Identities=13%  Similarity=0.072  Sum_probs=182.5

Q ss_pred             hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE-------
Q 009523          201 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-------  267 (532)
Q Consensus       201 p~~~~Le~~lA~l~----ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~-------  267 (532)
                      +...+|++++++++    +.  ++.+++++|++++..+ .+++++||+|+++.|+|++....+    ...|.+       
T Consensus       111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~g~~~~~~  185 (449)
T 3qgu_A          111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTS----VMMGMTGDHNGTG  185 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHH----HHHTCSCCBCSSS
T ss_pred             CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHH----HHcCCcccccccc
Confidence            45688999999997    43  4567777777999888 888999999999999999866443    333544       


Q ss_pred             ---EEEeCCCCHHHHHHhhcC-CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-----cccc
Q 009523          268 ---ATVIDPADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKAL  335 (532)
Q Consensus       268 ---v~~vd~~dle~Le~al~~-~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l  335 (532)
                         +..++.++.+.+...+.+ .++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.....     ....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~  265 (449)
T 3qgu_A          186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIY  265 (449)
T ss_dssp             BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGG
T ss_pred             cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHh
Confidence               666654432222111111 26899999999999999997   67888889999999999999765211     1111


Q ss_pred             ----ccCCcEEEECCccccCCCCCcEEEEEEeChHHHH--------HHHHHhhhcCCCccHHHHHHHHHhH-----HHHH
Q 009523          336 ----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT--------QIRNLHHVLGGALNPNAAYLIIRGM-----KTLH  398 (532)
Q Consensus       336 ----~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~--------~l~~~~~~~G~~~~~~~a~l~l~~l-----~tl~  398 (532)
                          ..+.++++.|+||.+|..| ...|++++++++++        .+...........++..+..+...+     +.+.
T Consensus       266 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  344 (449)
T 3qgu_A          266 EIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMN  344 (449)
T ss_dssp             GSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred             hccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHH
Confidence                1346799999999998554 35789998887654        3333333222344555544443333     3344


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCC
Q 009523          399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFG  477 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G  477 (532)
                      ...++..++++.+.+.|++. ++. +..|                ..|.++++.+++  .....+.+.|. ..++.+..|
T Consensus       345 ~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~--~~~~~~~~~l~~~~gI~v~pg  404 (449)
T 3qgu_A          345 AMIKFYKENAQILKTTFTEM-GFS-VYGG----------------DDAPYIWVGFPG--KPSWDVFAEILERCNIVTTPG  404 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCC-EEES----------------SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEG
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCe-eeCC----------------CCeeEEEEECCC--CCHHHHHHHHHHHCCEEEecc
Confidence            55566678888888888876 332 2111                136688998873  12233443332 236666666


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                      ..+.    +                 ..++.||||+..  ++.++.++.|.++++
T Consensus       405 ~~f~----~-----------------~~~~~iRis~~~~~e~i~~~l~~l~~~~~  438 (449)
T 3qgu_A          405 SGYG----P-----------------AGEGFVRASAFGSRENILEAVRRFKEAYG  438 (449)
T ss_dssp             GGGC----G-----------------GGTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             hHhC----C-----------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            4432    1                 025799999865  334455555555554

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.90  E-value=1.5e-22  Score=219.62  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=192.7

Q ss_pred             HHHHHHHhhhCCC----cE--EEeCCHHHHHHHHHHHhccCC--------CEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          205 VVEEKMSALEGAE----ST--VIMASGMSASTVMLLALVPAG--------GHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       205 ~Le~~lA~l~ga~----~~--i~~sSG~~Ai~~al~all~~G--------d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      ++++.+++++|.+    .+  +++++|++|+..+++++.++|        |+|+++.+.|.+...    .+...|++++.
T Consensus       143 ~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~----~~~~~G~~v~~  218 (514)
T 3mad_A          143 EVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDK----AAQYFGIKLVR  218 (514)
T ss_dssp             HHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHH----HHHHHTCEEEE
T ss_pred             HHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHH----HHHHcCCeeEE
Confidence            4556668888875    45  888999999999999998776        999999999998553    34456888888


Q ss_pred             eCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc------------cc
Q 009523          271 IDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------------QK  333 (532)
Q Consensus       271 vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~------------~~  333 (532)
                      ++.+     |+++|++++++ ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+..            .+
T Consensus       219 v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~  297 (514)
T 3mad_A          219 TPLDADYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD  297 (514)
T ss_dssp             ECBCTTSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS
T ss_pred             eeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc
Confidence            8755     89999999987 799999999999999999999999999999999999999875422            22


Q ss_pred             ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-h-----------hhcCCCcc--HHHHHHHHHhH--HHH
Q 009523          334 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-H-----------HVLGGALN--PNAAYLIIRGM--KTL  397 (532)
Q Consensus       334 ~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-~-----------~~~G~~~~--~~~a~l~l~~l--~tl  397 (532)
                      ....|+|+++.|++|+++++.  ..|+++.+++.+...... .           ...|....  ...++.+++.+  ..+
T Consensus       298 ~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~  375 (514)
T 3mad_A          298 FRLEGVTSVSADTHKYGYGAK--GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGY  375 (514)
T ss_dssp             TTSTTCCEEEECTTTTTCCCS--SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEECchhccCCCC--CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHH
Confidence            334588999999999965543  257776666544332110 0           00112111  23445444433  335


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009523          398 HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       398 ~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      ..++++..++++++.+.|++.+++..+..+                  .++++|..++  .....+.+.|...++.+ .|
T Consensus       376 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------------------~~~~~~~~~~--~~~~~l~~~L~~~Gi~v-~g  434 (514)
T 3mad_A          376 LDATRRILQAADRLKAGVRAIPSLKILGDP------------------LWVIAVASDE--LNIYQVMEEMAGRGWRL-NG  434 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEESSCC------------------SSEEEEECSS--SCHHHHHHHHHTTTCBC-EE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCeEEeCCC------------------eEEEEEeCCC--CCHHHHHHHHHhcCCEe-cc
Confidence            667778888999999999987776432211                  2378887654  22345566665445433 11


Q ss_pred             CcccccccCccccccCCCHHHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHhh
Q 009523          478 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG-----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       478 ~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG-----~ed~~dli~dL~~AL~~  531 (532)
                       .                       + .++.+|++++     .++.+++++.|.+++++
T Consensus       435 -~-----------------------~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          435 -L-----------------------H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             -E-----------------------T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             -C-----------------------C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence             1                       0 1357999987     36778888888888753

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.90  E-value=2.4e-22  Score=211.48  Aligned_cols=274  Identities=13%  Similarity=0.095  Sum_probs=178.1

Q ss_pred             HHHHHHHHHhhh----CCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC--
Q 009523          203 TVVVEEKMSALE----GAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga~---~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~--  273 (532)
                      ..+|++++++++    +.+   +++++++|++|+..++.+++++||+|+++.|+|.+...    .+...|.++..++.  
T Consensus        82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~  157 (418)
T 3rq1_A           82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV----ICSDTGRTLVTYSLFD  157 (418)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH----HHHHTTCEEEEECSBC
T ss_pred             hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH----HHHHcCCEEEEEeeeC
Confidence            456667776654    455   67777777899999999999999999999999987553    34567888888864  


Q ss_pred             ----CCHHHHHHhhcCC---Cee-EEEEeCC-CCCCCcccCHHHHH---HHHH------hCCCEEEEECCCCCCCcc---
Q 009523          274 ----ADMEGLEAALNNN---NVS-LFFTESP-TNPFLRCVDVKLVS---DLCH------KKGAIVCIDGTFATPLNQ---  332 (532)
Q Consensus       274 ----~dle~Le~al~~~---~tk-lV~lesP-~NptG~v~dl~~I~---~la~------~~gi~lIvDet~a~~~~~---  332 (532)
                          .|+++|++++++.   +++ +|++++| +||||.+.+.+++.   ++|+      ++|+++|+|++|......   
T Consensus       158 ~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~  237 (418)
T 3rq1_A          158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE  237 (418)
T ss_dssp             TTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred             CCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence                2789999988741   344 8999999 99999999966555   5555      899999999997543211   


Q ss_pred             -cc-c----ccCCc---EEEECCccccCCCCCcEEEEEEe---ChHHHHHHHHHhhhc----CCCccHHHHHHHHHhHHH
Q 009523          333 -KA-L----SLGAD---LVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVL----GGALNPNAAYLIIRGMKT  396 (532)
Q Consensus       333 -~~-l----~~gaD---ivv~S~sK~lgg~gd~~gG~lv~---~~~li~~l~~~~~~~----G~~~~~~~a~l~l~~l~t  396 (532)
                       .+ .    ....|   +++.|+||.+|.+|. ..|++++   ++++++.++......    ....+...+..+...++.
T Consensus       238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  316 (418)
T 3rq1_A          238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVAD  316 (418)
T ss_dssp             HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCC
Confidence             01 1    11223   788999999986663 5788887   888988887654321    123455554444433322


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009523          397 ----------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA  466 (532)
Q Consensus       397 ----------l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~  466 (532)
                                +....++..++++.+.+.|+++ ++. +..|                ..|.++++.++.    ...|.+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~----~~~~~~~  374 (418)
T 3rq1_A          317 PAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLP-MLPY----------------RGGFFITIPTDS----ANAICEE  374 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-CCCC----------------CSSSEEEEECTT----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CCCC----------------CceEEEEcCCCC----HHHHHHH
Confidence                      1122234446666777777764 221 1111                124466666642    2334444


Q ss_pred             cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHhh
Q 009523          467 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALHA  531 (532)
Q Consensus       467 L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~---ed~~dli~dL~~AL~~  531 (532)
                      |...++.+..|                            .+.+|||++.   ++.+++++.|.+++++
T Consensus       375 l~~~gi~v~~g----------------------------~~~iRis~~~~~~~~i~~~~~~l~~~l~~  414 (418)
T 3rq1_A          375 LKKEHIYVIAL----------------------------ANGIRIAACGIPKCQMTGLAEKIYNAMKS  414 (418)
T ss_dssp             HHHTTEECEEC----------------------------SSEEEEEGGGSCHHHHTTHHHHHHHHHHH
T ss_pred             HHhCCEEEecC----------------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            44446655443                            3579999983   3345567777777654

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.90  E-value=4e-22  Score=216.05  Aligned_cols=201  Identities=12%  Similarity=0.141  Sum_probs=145.7

Q ss_pred             CcEEEeCCHHHHHHHHHHHhccCCC----EEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-------CHHHHHHhhcC
Q 009523          217 ESTVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALNN  285 (532)
Q Consensus       217 ~~~i~~sSG~~Ai~~al~all~~Gd----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-------dle~Le~al~~  285 (532)
                      +++++++++++|+.+++.+++++||    +|+++.|.|.....    .+...|.++..++.+       |+++|++++++
T Consensus       154 ~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~----~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~  229 (498)
T 3ihj_A          154 DNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSA----VISELDAIQVNYYLDEENCWALNVNELRRAVQE  229 (498)
T ss_dssp             GGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHH----HHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHH
T ss_pred             ccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHH----HHHHcCCEEEEeeccccccCCCCHHHHHHHHHh
Confidence            4677888888999999999999875    99999999987553    344567777776543       89999999875


Q ss_pred             C----CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc-----cc-c----cC-------CcE
Q 009523          286 N----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL-S----LG-------ADL  341 (532)
Q Consensus       286 ~----~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~-----~l-~----~g-------aDi  341 (532)
                      .    ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......     ++ .    .+       ..+
T Consensus       230 ~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i  309 (498)
T 3ihj_A          230 AKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELA  309 (498)
T ss_dssp             HTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEE
T ss_pred             hhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEE
Confidence            2    4899999999999999987   5678999999999999999987643211     11 0    11       137


Q ss_pred             EEECCccccCCCCCcEEEEEE---eChHHHHHHHHHhhhcCCCccHHHHHHHHHh--------------HHHHHHHHHHH
Q 009523          342 VLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRG--------------MKTLHLRVQQQ  404 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv---~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~--------------l~tl~~r~~~~  404 (532)
                      +++|+||.+.|..+.++||++   +++++++.+....... .+.+....+++...              ++.+....++.
T Consensus       310 ~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l  388 (498)
T 3ihj_A          310 SFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVR-LCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNL  388 (498)
T ss_dssp             EEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHS-CCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             EEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHH
Confidence            889999999542235688887   6888888887765532 33344433333222              23334445666


Q ss_pred             HHHHHHHHHHHHhCCCce
Q 009523          405 NSTALRMAKILEAHPKVK  422 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~  422 (532)
                      .++++.+.+.|+++|++.
T Consensus       389 ~~~~~~l~~~L~~~~g~~  406 (498)
T 3ihj_A          389 AKKAKLTEDLFNQVPGIH  406 (498)
T ss_dssp             HHHHHHHHHHHHTSTTEE
T ss_pred             HHHHHHHHHHHhcCCCcE
Confidence            788889999999877653

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.90  E-value=3.4e-23  Score=216.47  Aligned_cols=283  Identities=13%  Similarity=0.130  Sum_probs=190.8

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc------C-CCEEEEcCCCCcchHH-HHHHhcccCCcE--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKTRI-FIETVLPKMGIT--  267 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~------~-Gd~VIv~~~~y~~t~~-~~~~~l~~~Gv~--  267 (532)
                      |.++..++++++|++++|.+++++++||++|+..++..+..      + +|+|++.++.|++... .+. .   .|.+  
T Consensus        79 ~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~---~g~~~~  154 (397)
T 2ord_A           79 FWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-A---TGQPKY  154 (397)
T ss_dssp             SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-H---SBCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-c---cCChhh
Confidence            56788999999999999988899999999999999988753      5 4789999999977443 222 1   2222  


Q ss_pred             ----------EEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc-c---cCHHHHHHHHHhCCCEEEEECCCCCCCc--
Q 009523          268 ----------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-C---VDVKLVSDLCHKKGAIVCIDGTFATPLN--  331 (532)
Q Consensus       268 ----------v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~-v---~dl~~I~~la~~~gi~lIvDet~a~~~~--  331 (532)
                                +..++..|+++|++++++ ++++|++++|+||||. +   .++++|.++|+++|+++|+|+++.....  
T Consensus       155 ~~~~~p~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g  233 (397)
T 2ord_A          155 QKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG  233 (397)
T ss_dssp             HGGGCSCCTTEEEECTTCHHHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccccCCCCCCeeEecCCCHHHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc
Confidence                      667777899999999987 7999999999999999 4   4588999999999999999999863211  


Q ss_pred             --c--cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHH
Q 009523          332 --Q--KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQN  405 (532)
Q Consensus       332 --~--~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~  405 (532)
                        .  ..+....|++  |++|+++++  ...|+++++++++ .++..........++..++.+...++.+.  ...++..
T Consensus       234 ~~~~~~~~~~~~d~~--s~sK~~~~G--~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  308 (397)
T 2ord_A          234 KLFAYQKYGVVPDVL--TTAKGLGGG--VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE  308 (397)
T ss_dssp             SSSHHHHHTCCCSEE--EECGGGGTT--SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHH
T ss_pred             cchhhhhhCCCCCee--eeccccCCC--cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence              1  1112236876  678999953  3567888887765 54322222223456777766666666543  2345555


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccccc
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      ++++++.+.|++.+.    .+|.+.          ...+.|++++|++++. .....+.+.|...++.+..|        
T Consensus       309 ~~~~~l~~~L~~~~~----~~~~~~----------~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~--------  365 (397)
T 2ord_A          309 EKGNYLMKKLQEMKE----EYDVVA----------DVRGMGLMIGIQFREE-VSNREVATKCFENKLLVVPA--------  365 (397)
T ss_dssp             HHHHHHHHHHHHHHH----HCTTEE----------EEEEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE--------
T ss_pred             HHHHHHHHHHHHHHH----hCCceE----------EEEEEeEEEEEEECCh-HHHHHHHHHHHHCCCEEccC--------
Confidence            667777777765310    011100          0122467899999743 12345555554446554432        


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhhC
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHAI  532 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~l  532 (532)
                                         .++.+||+++.    ++.+++++.|.+++++|
T Consensus       366 -------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  397 (397)
T 2ord_A          366 -------------------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI  397 (397)
T ss_dssp             -------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             -------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHhhC
Confidence                               14689999654    44566677777776654

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.90  E-value=1.9e-22  Score=210.63  Aligned_cols=291  Identities=16%  Similarity=0.083  Sum_probs=193.6

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc--EEEEe
Q 009523          199 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI  271 (532)
Q Consensus       199 ~~p~~~~Le----~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv--~v~~v  271 (532)
                      +++....++    +++++++|.+.. +++++|++|+..++.+++++||+|+++.++|++..... ..+...|.  ....+
T Consensus        63 g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~  141 (407)
T 2dkj_A           63 GCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSY  141 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEec
Confidence            556544555    499999998755 77899999999999999999999999999998763111 11222233  33344


Q ss_pred             C------CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCCc
Q 009523          272 D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGAD  340 (532)
Q Consensus       272 d------~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~gaD  340 (532)
                      +      ..|+++|++++++.++++|++++|+||  .+.|+++|.++|+++|+++|+|++|+.++.     ..+.. .+|
T Consensus       142 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~d  218 (407)
T 2dkj_A          142 GVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAH  218 (407)
T ss_dssp             CCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCS
T ss_pred             CCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-ccc
Confidence            2      247999999997435899999999997  678999999999999999999999875221     11122 379


Q ss_pred             EEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcC-CCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G-~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~la~  413 (532)
                      +++.|+||+++|+.   +|+++++ +++++.++....... +..++.....+...++     .+....++..++++++.+
T Consensus       219 i~~~s~sK~l~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  295 (407)
T 2dkj_A          219 VVTSTTHKTLRGPR---GGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE  295 (407)
T ss_dssp             EEEEESSGGGCCCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCCC---ceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999998653   6999998 788888876543222 2334432222222332     334556667788888888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      .|++. ++. +..|               .+.|+++++.++........+.+.|...++.+..|....         |..
T Consensus       296 ~L~~~-g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~---------~~~  349 (407)
T 2dkj_A          296 ELARR-GYR-IVTG---------------GTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPF---------DPK  349 (407)
T ss_dssp             HHHHT-TCE-EGGG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTT---------CSS
T ss_pred             HHHhC-Cce-eecC---------------CCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcc---------ccc
Confidence            88876 443 2211               114678999987311123445555555577776664310         000


Q ss_pred             CCHHHHHhcCCCCCeEEEEec--------CCCHHHHHHHHHHHHh
Q 009523          494 LSQSERLKYGIMDNLVRFSFG--------VEDFEDLKADVLQALH  530 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG--------~ed~~dli~dL~~AL~  530 (532)
                       .       ...++.+|+|++        .++.+.+++.|.++++
T Consensus       350 -~-------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~  386 (407)
T 2dkj_A          350 -P-------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALL  386 (407)
T ss_dssp             -C-------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred             -c-------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHh
Confidence             0       012468999984        3667788888877765

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.90  E-value=3.4e-22  Score=216.76  Aligned_cols=285  Identities=14%  Similarity=0.034  Sum_probs=194.4

Q ss_pred             HHHHHHHhhhCCC-------cEEEeCCHHHHHHHHHHHhccC--------CC-----EEEEcCCCCcchHHHHHHhcccC
Q 009523          205 VVEEKMSALEGAE-------STVIMASGMSASTVMLLALVPA--------GG-----HIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       205 ~Le~~lA~l~ga~-------~~i~~sSG~~Ai~~al~all~~--------Gd-----~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      ++++.+++++|.+       ..+++++|++|+.+++.++..+        ||     +|+++.+.|....    ..+...
T Consensus        99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~~~~  174 (502)
T 3hbx_A           99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFARYF  174 (502)
T ss_dssp             HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHHHHT
T ss_pred             HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHHHHc
Confidence            4556688888876       3456899999999998887655        77     9999999998744    345567


Q ss_pred             CcEEEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC------CCEEEEECCCCCCCc-
Q 009523          265 GITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPLN-  331 (532)
Q Consensus       265 Gv~v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~------gi~lIvDet~a~~~~-  331 (532)
                      |++++.++.+      |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++      |+++++|++++.+.. 
T Consensus       175 G~~~~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p  253 (502)
T 3hbx_A          175 EVELKEVKLSEGYYVMDPQQAVDMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAP  253 (502)
T ss_dssp             TCEEEEECCBTTBCSCCHHHHHHHCCT-TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred             CceeEEEecCCCcCcCCHHHHHHHHhh-CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhh
Confidence            8888888642      79999999988 699999999999999999999999999999      999999999874321 


Q ss_pred             --ccc-----cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHH-HHHHhhhcC----------CCc--cHHHHHHHH
Q 009523          332 --QKA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHVLG----------GAL--NPNAAYLII  391 (532)
Q Consensus       332 --~~~-----l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~-l~~~~~~~G----------~~~--~~~~a~l~l  391 (532)
                        ...     ...++|++..|+||+++++.+. |++++.+++.+.. +.......+          ...  .....|.++
T Consensus       254 ~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al  332 (502)
T 3hbx_A          254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGI-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL  332 (502)
T ss_dssp             HHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHH
T ss_pred             hhCcccccccCCCCceEEEECcccccCCCCCe-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHH
Confidence              111     1247899999999999766532 3344444544422 111001111          111  233445544


Q ss_pred             H--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcC
Q 009523          392 R--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALK  468 (532)
Q Consensus       392 ~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~  468 (532)
                      +  +.+.+..++++..++++++.+.|++++++..+. +.    +           ..+++.|.++++. .....+.+.|.
T Consensus       333 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~----~-----------~~~~v~f~~~~~~~~~~~~l~~~L~  396 (502)
T 3hbx_A          333 IRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS-KD----E-----------GVPLVAFSLKDSSCHTEFEISDMLR  396 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS-CS----S-----------SSSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-CC----C-----------CceEEEEEecCCCcCCHHHHHHHHH
Confidence            4  445677888889999999999999988765432 21    0           2458999997531 22345666666


Q ss_pred             CCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          469 IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       469 ~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      ..|+.++..      ..|...              .....+|++++.    |+.++++++|+++++.
T Consensus       397 ~~Gi~v~~~------~~p~~~--------------~~~~~lRisv~~~~t~edid~li~~L~~~l~~  443 (502)
T 3hbx_A          397 RYGWIVPAY------TMPPNA--------------QHITVLRVVIREDFSRTLAERLVIDIEKVMRE  443 (502)
T ss_dssp             TTTCBCCEE------ECCTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCcEEeec------cCCccc--------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            556544311      112110              024689999994    5566777777777653

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.90  E-value=9.2e-22  Score=209.16  Aligned_cols=289  Identities=15%  Similarity=0.162  Sum_probs=185.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---------cCC-CEEEEcCCCCcchHHHHHHhcc-----
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all---------~~G-d~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      +.++...+|+++|+++.|.+++++++||++|+..+++.+.         .+| |+||+.++.|++..........     
T Consensus       104 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~  183 (433)
T 1z7d_A          104 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  183 (433)
T ss_dssp             SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence            5678899999999999998889999999999999998753         367 9999999999875321111111     


Q ss_pred             ----cCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc----CHHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          263 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       263 ----~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~----dl~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                          .....+..++..|+++|+++++..++++|++|..+|++|.+.    ++++|.++|++||+++|+||++.....   
T Consensus       184 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~  263 (433)
T 1z7d_A          184 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK  263 (433)
T ss_dssp             --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred             ccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc
Confidence                111355667778999999999433799999987778899876    699999999999999999999853211   


Q ss_pred             ---ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHH
Q 009523          332 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  406 (532)
Q Consensus       332 ---~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~  406 (532)
                         .+......|++  |++|.++++ ...+|++++++++++.+...........++..++.+...++.+..  ..++..+
T Consensus       264 ~~~~~~~~~~~di~--t~sK~l~~G-~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  340 (433)
T 1z7d_A          264 LLCVHHYNVKPDVI--LLGKALSGG-HYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  340 (433)
T ss_dssp             SSGGGGGTCCCSEE--EECGGGGTT-SSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             chhhHhcCCCCCEE--EECccccCC-CCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence               12233457876  688999953 245789999998877664422112223467777666666665532  3445556


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      +.+++.+.|++...    .+|..          ...++.|.+++|++++.......+.+.|...++.+..+         
T Consensus       341 ~~~~l~~~L~~l~~----~~~~~----------~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---------  397 (433)
T 1z7d_A          341 LGGPFLENLKRELK----DSKIV----------RDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---------  397 (433)
T ss_dssp             HHHHHHHHHHHHHT----TCTTE----------EEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------
T ss_pred             HHHHHHHHHHHHHH----hCCCe----------EEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------
Confidence            66667666654210    01110          01134578999999742112445555554445544321         


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH  530 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed----~~dli~dL~~AL~  530 (532)
                                        .++.|||++++..    .+.+++.|.++++
T Consensus       398 ------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  427 (433)
T 1z7d_A          398 ------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVK  427 (433)
T ss_dssp             ------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence                              1468999887643    4445555555544

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4e-22  Score=215.09  Aligned_cols=276  Identities=12%  Similarity=0.083  Sum_probs=193.7

Q ss_pred             HHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc-----CC---CEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          204 VVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       204 ~~Le~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~-----~G---d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      +++++.+++++|.+    ..+++++|++|+.++++++.+     +|   |+|+++.+.|.+...    .+...|++++.+
T Consensus       110 ~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~----~~~~~G~~~~~v  185 (497)
T 3mc6_A          110 SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK----AAYYFGMKLRHV  185 (497)
T ss_dssp             HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH----HHHHSCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH----HHHHcCCeEEEE
Confidence            34556678888865    578888999999999998865     56   899999999988553    445568888888


Q ss_pred             CCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-------------cc
Q 009523          272 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-------------NQ  332 (532)
Q Consensus       272 d~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-------------~~  332 (532)
                      +.+      |+++|++++++ ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.             ..
T Consensus       186 ~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~  264 (497)
T 3mc6_A          186 ELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLL  264 (497)
T ss_dssp             CBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCC
T ss_pred             ecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccc
Confidence            643      58999999987 69999999999999999999999999999999999999987321             13


Q ss_pred             cccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCC----------Ccc--HHHHHHHHHhHH--H
Q 009523          333 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGG----------ALN--PNAAYLIIRGMK--T  396 (532)
Q Consensus       333 ~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~----------~~~--~~~a~l~l~~l~--t  396 (532)
                      +....|+|+++.|++|+++++.  ..|+++.+++.+.......  ...++          ...  ...++.+++.+.  .
T Consensus       265 ~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~  342 (497)
T 3mc6_A          265 DFRVPGVTSISCDTHKYGFAPK--GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENG  342 (497)
T ss_dssp             STTSTTCCEEEEETTTTTCCCS--SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEECchhhcCCCC--CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHH
Confidence            3345689999999999975543  2577777765544321100  00111          011  233555555443  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeec
Q 009523          397 LHLRVQQQNSTALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS  475 (532)
Q Consensus       397 l~~r~~~~~~~a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs  475 (532)
                      +..++++..++++++.+.|++ .|++..+..|                 .++++.|..++  .....+.+.|...++.++
T Consensus       343 ~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-----------------~~~~v~~~~~~--~~~~~l~~~L~~~Gi~v~  403 (497)
T 3mc6_A          343 YIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-----------------RYSVISFSSKT--LNIHELSDRLSKKGWHFN  403 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-----------------CSSEEEEECTT--TTHHHHHHHHHTTTCBCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-----------------CeeEEEEeCCC--CCHHHHHHHHHhCCEEEe
Confidence            456677788899999999999 5776533222                 35678887654  234556666655565443


Q ss_pred             CCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHhh
Q 009523          476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG---VEDFEDLKADVLQALHA  531 (532)
Q Consensus       476 ~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG---~ed~~dli~dL~~AL~~  531 (532)
                      .+.                          ..+.+|+++.   .++.++++++|.++++.
T Consensus       404 ~~~--------------------------~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          404 ALQ--------------------------KPVALHMAFTRLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             ECC--------------------------SSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred             cCC--------------------------CCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            221                          1235688775   47788999999888763

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.89  E-value=3.3e-21  Score=203.65  Aligned_cols=210  Identities=17%  Similarity=0.215  Sum_probs=164.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----  274 (532)
                      .+...+|++++++++|.+++++++||++|+.+++.++. +||+|++++++|++...    .+...|+++.+++.+     
T Consensus        51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~----~~~~~G~~~~~v~~~~~~~~  125 (424)
T 2po3_A           51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPH----ALRWIGLTPVFADIDPDTGN  125 (424)
T ss_dssp             CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHH----HHHHTTCEEEEECBCTTTSS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHH----HHHHcCCEEEEEecCCCcCC
Confidence            37889999999999999989999999999999999875 79999999999998664    344568888888643     


Q ss_pred             -CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc--cccccCCcEEEECCc--cc
Q 009523          275 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--KF  349 (532)
Q Consensus       275 -dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~--~~l~~gaDivv~S~s--K~  349 (532)
                       |+++|++++++ ++++|+++   ||+|.+.++++|.++|+++|+++|+|++++.+...  .++....|+++.|+|  |.
T Consensus       126 ~d~~~l~~~i~~-~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~  201 (424)
T 2po3_A          126 LDPDQVAAAVTP-RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKA  201 (424)
T ss_dssp             BCHHHHGGGCCT-TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cCHHHHHHhhCc-CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCC
Confidence             78999999987 79999984   48999999999999999999999999998854322  222223689999998  88


Q ss_pred             cCCCCCcEEEEEEeC-hHHHHHHHHHhhhc------------CCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGS-GKLVTQIRNLHHVL------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       350 lgg~gd~~gG~lv~~-~~li~~l~~~~~~~------------G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~  416 (532)
                      ++|.   .+|+++++ +++++.++......            ...+++..+++++..++.+....++..++++++.+.|+
T Consensus       202 l~~~---~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~  278 (424)
T 2po3_A          202 VNAF---EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLA  278 (424)
T ss_dssp             SCCS---SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCC---CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8763   47999998 78888877644321            11345666666666666666666777777888888887


Q ss_pred             hCCCc
Q 009523          417 AHPKV  421 (532)
Q Consensus       417 ~~p~v  421 (532)
                      +.|++
T Consensus       279 ~~~g~  283 (424)
T 2po3_A          279 DLPGV  283 (424)
T ss_dssp             SCTTE
T ss_pred             cCCCc
Confidence            76655

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.89  E-value=1.9e-21  Score=207.27  Aligned_cols=288  Identities=15%  Similarity=0.108  Sum_probs=192.8

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc---------cCC-CEEEEcCCCCcchHHHHHHhcc-----
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all---------~~G-d~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      +.++...+++++|++++|.+.+++++||++|+..+++.+.         .+| |+||+.++.|++..........     
T Consensus       115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~  194 (439)
T 2oat_A          115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY  194 (439)
T ss_dssp             SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence            5678899999999999998889999999999999998764         357 8999999999875322111111     


Q ss_pred             ----cCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCccc----CHHHHHHHHHhCCCEEEEECCCCCCC----
Q 009523          263 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPL----  330 (532)
Q Consensus       263 ----~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~----dl~~I~~la~~~gi~lIvDet~a~~~----  330 (532)
                          .....+..++..|+++|+++++..++++|++|..+|++|.+.    ++++|.++|++||+++|+||++....    
T Consensus       195 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~  274 (439)
T 2oat_A          195 DGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR  274 (439)
T ss_dssp             TTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred             cCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc
Confidence                111456677778999999999533799999987778899877    69999999999999999999984321    


Q ss_pred             --cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHH
Q 009523          331 --NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  406 (532)
Q Consensus       331 --~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~  406 (532)
                        ..+......|++  |++|.++++ ...+|++++++++++.+...........++..+..+...++.+..  ..++..+
T Consensus       275 ~~~~~~~~~~~Di~--t~sK~l~~G-~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  351 (439)
T 2oat_A          275 WLAVDYENVRPDIV--LLGKALSGG-LYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK  351 (439)
T ss_dssp             SSGGGGGTCCCSEE--EECGGGGTT-SSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             chhHHHhCCCCcEE--EecccccCC-CCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence              112233456876  788999963 235789999988877665422212223467777666666665532  3445556


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCccccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      +.+++.+.|++..      +|..          ...++.|.+++++++... .....+.+.|...++.+..+        
T Consensus       352 ~~~~l~~~L~~l~------~~~~----------~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~--------  407 (439)
T 2oat_A          352 LGIILRNELMKLP------SDVV----------TAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT--------  407 (439)
T ss_dssp             HHHHHHHHHTTSC------TTTE----------EEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS--------
T ss_pred             HHHHHHHHHHHhc------CCCc----------EEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC--------
Confidence            6667777776531      1110          011346789999997530 12345555554445544321        


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA  531 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~~  531 (532)
                                         .++.|||++++.    +.+++++.|.+++++
T Consensus       408 -------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          408 -------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             -------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence                               147899988753    445555556665554

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.89  E-value=4.5e-22  Score=203.58  Aligned_cols=285  Identities=13%  Similarity=0.060  Sum_probs=190.4

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEE
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  269 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~  269 (532)
                      .|.+++...+..+++++.+++++|.+  +++++++|++|+..++.+++++||+|+++++.|++....  ..++..|+++.
T Consensus        40 ~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~  117 (359)
T 1svv_A           40 TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVV  117 (359)
T ss_dssp             CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEE
T ss_pred             hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeE
Confidence            46666677888999999999999864  477788889999999999999999999999999875431  02455688888


Q ss_pred             EeCCC----CHHHHHHhhcCC------CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCC---CCC---C
Q 009523          270 VIDPA----DMEGLEAALNNN------NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATP---L  330 (532)
Q Consensus       270 ~vd~~----dle~Le~al~~~------~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~---a~~---~  330 (532)
                      .++.+    |+++|++++++.      ++++|++++| ||||.+.|   +++|.++|+++|+++|+|+++   ..+   .
T Consensus       118 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~  196 (359)
T 1svv_A          118 TAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN  196 (359)
T ss_dssp             EECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC
T ss_pred             EEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc
Confidence            88754    589999999763      2899999999 79999998   889999999999999999997   211   1


Q ss_pred             ccccc--ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhHH--HHHHHHHHH
Q 009523          331 NQKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMK--TLHLRVQQQ  404 (532)
Q Consensus       331 ~~~~l--~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~a~l~l~~l~--tl~~r~~~~  404 (532)
                      .....  ..+.|+++.|++|+.++.+   .|+++.++++++.++......+..  .+......+...++  .+....++.
T Consensus       197 ~~~~~~~~~~~d~~~~s~~K~g~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  273 (359)
T 1svv_A          197 DLTLADIARLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHS  273 (359)
T ss_dssp             CCCHHHHHHHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred             chhhhhhhhcCCEEEEecccCCCCCc---eEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHH
Confidence            11211  1357999999999855432   588888888877766542222221  11111111111121  233445566


Q ss_pred             HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCccccc
Q 009523          405 NSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIV  483 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~-~i~vs~G~~~sl~  483 (532)
                      .++++++.+.| +.+++. +..|.                .+.++++.++      ..+.+.|... ++.+ +|.     
T Consensus       274 ~~~~~~l~~~L-~~~~~~-~~~~~----------------~~~~~~~~~~------~~~~~~l~~~~gi~v-~~~-----  323 (359)
T 1svv_A          274 NKMAAILKAGL-EACGIR-LAWPS----------------ASNQLFPILE------NTMIAELNNDFDMYT-VEP-----  323 (359)
T ss_dssp             HHHHHHHHHHH-HHTTCC-BSSCC----------------SSSEECBEEE------HHHHHHHTTTEECEE-EEE-----
T ss_pred             HHHHHHHHHHh-ccCCeE-EccCC----------------ccceEEEEcC------HHHHHHHHHhcCEEE-Eec-----
Confidence            67778888888 445442 21121                3556777775      2455566544 5544 110     


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                       .+                 ..++.|||+++....++.++.+.++|+
T Consensus       324 -~~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~  352 (359)
T 1svv_A          324 -LK-----------------DGTCIMRLCTSWATEEKECHRFVEVLK  352 (359)
T ss_dssp             -ET-----------------TTEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             -cc-----------------CCCceEEEEccCcCCHHHHHHHHHHHH
Confidence             00                 124689999987555555555555544

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.89  E-value=8.9e-22  Score=205.20  Aligned_cols=290  Identities=15%  Similarity=0.125  Sum_probs=192.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC--cEEEEeC-----
Q 009523          201 PTTVVVEEKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVID-----  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G--v~v~~vd-----  272 (532)
                      ...+++++.+++++|.++.++ ++||++|+++++. ++++||+||+..+.|++..  +...+...|  .++.+++     
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g  111 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTE  111 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccc
Confidence            567788999999999876554 5688999999875 4579999999999998743  223334444  3555543     


Q ss_pred             ---------CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcccccccCCc
Q 009523          273 ---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD  340 (532)
Q Consensus       273 ---------~~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaD  340 (532)
                               ..|++++++++++.++++|++.+++|++|.+.|   +++|.++|+++|+++|+|++++.....+...+|+|
T Consensus       112 ~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d  191 (379)
T 3ke3_A          112 DTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGID  191 (379)
T ss_dssp             CCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCS
T ss_pred             cccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCC
Confidence                     358999999995336899999999999999999   99999999999999999999873334445566899


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-----------------hhcC-----CCccHHHHHHHHHhHHHH-
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----------------HVLG-----GALNPNAAYLIIRGMKTL-  397 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-----------------~~~G-----~~~~~~~a~l~l~~l~tl-  397 (532)
                      +++.|++|+++++.  .+|++++++++++.+....                 ...|     .+.++...+.+..+++.+ 
T Consensus       192 ~~~~s~~K~l~~~~--g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~  269 (379)
T 3ke3_A          192 VLISAPQKGWSSTP--CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK  269 (379)
T ss_dssp             EEEECTTTTTCSCC--CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhcCCCC--ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999998764  2689999998887775311                 0011     244555444444444433 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          398 ----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       398 ----~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                          ..+.++..++++++.+.|++. ++. +..+.     .        ...+.+..+.+++ .. . .+...|...++.
T Consensus       270 ~~g~~~~~~~~~~l~~~l~~~l~~~-g~~-~~~~~-----~--------~~~~~i~~~~~~~-~~-~-~~~~~L~~~Gi~  331 (379)
T 3ke3_A          270 EIGFDILRDAQWELGNRVRKVLTDK-GIE-SVAAE-----G--------FEAPGVVVSYTER-DD-M-HKGSAFAEAGLQ  331 (379)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSBCT-----T--------CBCSSEEEEECSC-HH-H-HSSHHHHHTTCC
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHc-CCE-ecCCc-----c--------ccCceEEEEccCC-cc-h-HHHHHHHHCCeE
Confidence                344455567777788888775 232 11111     0        0123455555543 22 1 113334444666


Q ss_pred             ecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          474 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       474 vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      ++.|..++. ..|                 ...+.||+|+..    ++++.+++.|++++++
T Consensus       332 v~~g~~~~~-~~~-----------------~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          332 IAAGVPLKV-GEP-----------------DNFKTFRLGLFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             CEECCCCSS-CCC-----------------TTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             EeCCccccc-ccc-----------------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence            665532110 000                 125789999874    6777777777777654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.89  E-value=1.4e-21  Score=206.83  Aligned_cols=285  Identities=14%  Similarity=0.140  Sum_probs=192.2

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHHhcc------
Q 009523          197 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP------  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~-------~G-d~VIv~~~~y~~t~~~~~~~l~------  262 (532)
                      .+.++...+|+++|+++.|.+++++++||++|+..+++.+..       +| ++||+.++.|++..........      
T Consensus        95 ~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~  174 (420)
T 2pb2_A           95 VFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSD  174 (420)
T ss_dssp             TSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHT
T ss_pred             ccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccc
Confidence            457789999999999999988899999999999999998765       77 4999999999875322211111      


Q ss_pred             ---cCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcc----cCHHHHHHHHHhCCCEEEEECCCCCCCc----
Q 009523          263 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC----VDVKLVSDLCHKKGAIVCIDGTFATPLN----  331 (532)
Q Consensus       263 ---~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v----~dl~~I~~la~~~gi~lIvDet~a~~~~----  331 (532)
                         .....+..++..|+++|++++++ ++++|++|+++|++|.+    .++++|.++|+++|+++|+||++.....    
T Consensus       175 ~~~p~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~  253 (420)
T 2pb2_A          175 GFGPKPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL  253 (420)
T ss_dssp             TSSSCCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred             cCCCCCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence               11123666777799999999987 79999999998888852    3588999999999999999999853211    


Q ss_pred             --ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHH
Q 009523          332 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  407 (532)
Q Consensus       332 --~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~  407 (532)
                        .+......|++  |++|.+++ | ...|++++++++++.++..........++..++.+...++.+.  ...++..++
T Consensus       254 ~~~~~~~~~~dii--t~sK~l~~-G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~  329 (420)
T 2pb2_A          254 FAYMHYGVTPDIL--TSAKALGG-G-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTK  329 (420)
T ss_dssp             SHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeE--EecccccC-C-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence              12233457877  57899995 3 3578888888877665442111122346777776666666542  334555566


Q ss_pred             HHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccc
Q 009523          408 ALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       408 a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      .+++.+.|++.    |.+..+                  ++.|.+++|+++... .....+.+.|...++.+..|     
T Consensus       330 ~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~-----  386 (420)
T 2pb2_A          330 RQQFVQHLQAIDEQFDIFSDI------------------RGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA-----  386 (420)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEE------------------EEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES-----
T ss_pred             HHHHHHHHHHHHhcCCCeEEE------------------EecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC-----
Confidence            67777776653    222111                  235789999996421 12455666665456554432     


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                                            .++.|||++.+    |+.+++++.|.+++++
T Consensus       387 ----------------------~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          387 ----------------------GADVMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             ----------------------STTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                  14689999654    4455666666666653

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.89  E-value=7.7e-22  Score=208.66  Aligned_cols=278  Identities=12%  Similarity=0.097  Sum_probs=177.4

Q ss_pred             CCCC-chhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC---
Q 009523          196 GRYG-NPTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG---  265 (532)
Q Consensus       196 ~R~~-~p~~~~Le~~lA~l~----ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G---  265 (532)
                      .+|+ .+...+|++++++++    +.  ++.++++++++++.. +..++++||+|+++.|.|++....+.. ....|   
T Consensus        92 ~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~  169 (432)
T 3ei9_A           92 SGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFN  169 (432)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEE
T ss_pred             cCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCccccc
Confidence            3444 345678999999986    43  356666666788876 578889999999999999987655432 22222   


Q ss_pred             ------cEEEEeCCCCH----HHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-
Q 009523          266 ------ITATVIDPADM----EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-  331 (532)
Q Consensus       266 ------v~v~~vd~~dl----e~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-  331 (532)
                            .++.+++.++.    .++++  .+ ++++|++++|+||||.+.+   +++|+++|++||+++|+|++|+.... 
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~  246 (432)
T 3ei9_A          170 TDVQKYGNIEYMRCTPENGFFPDLST--VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSD  246 (432)
T ss_dssp             TTTTEETTCEEEECCGGGTTSCCGGG--CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS
T ss_pred             ccccccCceEEeccCcccCCcCChhh--CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccC
Confidence                  23444443321    12222  23 6899999999999999987   55677779999999999999874321 


Q ss_pred             ---cccc----ccCCcEEEECCccccCCCCCcEEEEEEeChHH--------HHHHHHHhhhcCCCccHHHHHHHHHh---
Q 009523          332 ---QKAL----SLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------VTQIRNLHHVLGGALNPNAAYLIIRG---  393 (532)
Q Consensus       332 ---~~~l----~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~l--------i~~l~~~~~~~G~~~~~~~a~l~l~~---  393 (532)
                         ....    ..+.++++.|+||.+|.+| ...|++++++++        ++.+...........++.....+...   
T Consensus       247 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  325 (432)
T 3ei9_A          247 DNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP  325 (432)
T ss_dssp             SCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSH
T ss_pred             CCCCChhhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc
Confidence               1111    1245799999999998665 357899988877        67776654433444555544433332   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCC
Q 009523          394 --MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIP  470 (532)
Q Consensus       394 --l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~  470 (532)
                        .+.+....++..++++.+.+.|+++ ++... .|                ..|.++++.+++.  ....+...+ +..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~~~--~~~~~~~~ll~~~  385 (432)
T 3ei9_A          326 EGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVY-GG----------------KNAPYVWVHFPNQ--SSWDVFAEILEKT  385 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-EC----------------SSSSEEEEECTTS--CHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHC-Cceec-CC----------------CcceEEEEECCCC--CHHHHHHHHHHHC
Confidence              3345556667778888899999876 33222 11                1356889998742  222333332 223


Q ss_pred             ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009523          471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL  521 (532)
Q Consensus       471 ~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl  521 (532)
                      ++.+..|..+.    +                 ..+++||||++. +.+++
T Consensus       386 gv~v~~g~~f~----~-----------------~~~~~iRis~~~-~~e~l  414 (432)
T 3ei9_A          386 HVVTTPGSGFG----P-----------------GGEGFVRVSAFG-HRENI  414 (432)
T ss_dssp             CEECEEGGGGC----G-----------------GGTTEEEEECCS-CHHHH
T ss_pred             CEEEeCchHhC----C-----------------CCCCEEEEEecC-CHHHH
Confidence            66666664422    1                 025799999975 33433

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.89  E-value=7.4e-22  Score=215.70  Aligned_cols=158  Identities=13%  Similarity=0.144  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhhh----CC-------CcEEEeCCHHHHHHHHHHH-----hccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          203 TVVVEEKMSALE----GA-------ESTVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga-------~~~i~~sSG~~Ai~~al~a-----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ...+++.+++++    +.       ++++++++|++|+..++.+     ++++||+|+++.|+|.+..    ..+...|.
T Consensus       140 ~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g~  215 (533)
T 3f6t_A          140 LVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKDY  215 (533)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGGS
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcCC
Confidence            456677777665    33       3556666667999999988     7899999999999998754    34455677


Q ss_pred             EEEEeCCC---------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHH---HHHHHHH-hCCCEEEEECCCCCCCc--
Q 009523          267 TATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFATPLN--  331 (532)
Q Consensus       267 ~v~~vd~~---------dle~Le~al~~~~tklV~lesP~NptG~v~dl~---~I~~la~-~~gi~lIvDet~a~~~~--  331 (532)
                      ++..++.+         |+++|++++++ ++++|++++|+||||.+++.+   +|+++|+ ++|+++|+|++|+....  
T Consensus       216 ~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~  294 (533)
T 3f6t_A          216 ELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF  294 (533)
T ss_dssp             EEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC
T ss_pred             eEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc
Confidence            77776542         79999999987 799999999999999999876   7788888 68999999999875322  


Q ss_pred             --ccccccCCcEEEECCccccCCCCCcEEEEEEeChH
Q 009523          332 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK  366 (532)
Q Consensus       332 --~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~  366 (532)
                        ......+.++++.|+||.+|.+| .+.|+++++++
T Consensus       295 ~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~  330 (533)
T 3f6t_A          295 KSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEK  330 (533)
T ss_dssp             CCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESS
T ss_pred             cCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcH
Confidence              11112245699999999998666 35678887654

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.88  E-value=9.4e-21  Score=198.35  Aligned_cols=302  Identities=13%  Similarity=0.089  Sum_probs=203.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .+...+|++++|+++|.+++++++||++|+.+++.++ +++||+|+++.++|+++...+    ...|+++.+++.+    
T Consensus        31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~  106 (394)
T 1o69_A           31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYN  106 (394)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSS
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCC
Confidence            3779999999999999988999999999999999999 999999999999999976443    3468888888743    


Q ss_pred             -CHHHHHHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccccc---c-cCCcEEEECCc
Q 009523          275 -DMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---S-LGADLVLHSAT  347 (532)
Q Consensus       275 -dle~Le~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l---~-~gaDivv~S~s  347 (532)
                       |+++|++++++.  ++++|++++   |+|...|+++|.++|+++|+++|+|++++.+......   . .++|+...|.+
T Consensus       107 ~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~  183 (394)
T 1o69_A          107 IDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN  183 (394)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             cCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCC
Confidence             789999998753  589999974   7899999999999999999999999999854322111   1 23566666779


Q ss_pred             cccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcC-C-------------CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-G-------------ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA  412 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G-~-------------~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la  412 (532)
                      |.++|.+   +|+++++ +++++.++....... .             .+++..+.+++..++.+..++++..++++++.
T Consensus       184 K~l~~~~---~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~  260 (394)
T 1o69_A          184 KIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK  260 (394)
T ss_dssp             SSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCC---ceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998654   7899985 788888876532110 0             03455565555556667777788888899999


Q ss_pred             HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--------------------HHHHHHHHHcCCCce
Q 009523          413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--------------------TATIKFIDALKIPYI  472 (532)
Q Consensus       413 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~--------------------~~~~~~l~~L~~~~i  472 (532)
                      +.|++.  + .+ ++... ..         .....+++|.++.+.                    .....+.+.|...++
T Consensus       261 ~~L~~~--~-~~-~~~~~-~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI  326 (394)
T 1o69_A          261 EFLGEY--F-SF-LDELE-NS---------RSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQI  326 (394)
T ss_dssp             HHHTTT--E-EC-CCCCT-TE---------ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTC
T ss_pred             HHhccc--c-cc-cCCCC-CC---------cceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCC
Confidence            988875  2 22 22110 00         001125777776321                    245566777766677


Q ss_pred             eecCCCcccccccCccccc--cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          473 APSFGGCESIVDQPAIMSY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~--~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      .++.|... +.+.|.....  ..++-....    ..+.+|+..+...+++.++.+.++|+
T Consensus       327 ~v~~~~~~-~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~t~edi~~~~~~l~  381 (394)
T 1o69_A          327 ETRPLWKA-MHTQEVFKGAKAYLNGNSELF----FQKGICLPSGTAMSKDDVYEISKLIL  381 (394)
T ss_dssp             CCBCCCCC-GGGCGGGTTCEEEECSHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cccccCCc-cccchhhhccCCCCChHHHHH----hcCeEEccCCCCCCHHHHHHHHHHHH
Confidence            77776431 1112211100  001111111    12456666677666666666666665

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.88  E-value=6e-22  Score=204.24  Aligned_cols=274  Identities=12%  Similarity=0.034  Sum_probs=178.6

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          202 TTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga~---~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      ..+++++++++++|.+   +++++ ++|++|+..++.+++++||+|++..+.|.+..  +...++..| +++.++.+   
T Consensus        50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~  126 (362)
T 2c0r_A           50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS  126 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence            5678999999999985   44556 56679999999999999999988876654432  113344557 66666421   


Q ss_pred             ------CHHHHHHhhcCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCc
Q 009523          275 ------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT  347 (532)
Q Consensus       275 ------dle~Le~al~~~~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~s  347 (532)
                            |.++++  +++ +|++|++++|+||||.+ .|+++|      +|+++|+|++|+.+...-.+. ..|+++.|+|
T Consensus       127 ~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~  196 (362)
T 2c0r_A          127 NYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQ  196 (362)
T ss_dssp             TTCSCCCGGGCC--CCT-TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred             ccccCCCHHHcc--cCC-CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEecc
Confidence                  333332  565 79999999999999996 677776      899999999987653211122 1389999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHH------------hhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNL------------HHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  409 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~------------~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a~  409 (532)
                      |++|+.|   .|++++++++++.++..            .....++.+....+.+..+++.      +..+.++..++++
T Consensus       197 K~~g~~G---~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  273 (362)
T 2c0r_A          197 KNLGPSG---VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKAS  273 (362)
T ss_dssp             TTTCCSS---CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccCcC---cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9998665   68888888776554321            1122334555554544444443      3455666677888


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.+.|++++.+..+..+     +.+        ..+++++|.+++ ......|.+.|...++.+..|..          
T Consensus       274 ~l~~~L~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~~~~g~~----------  329 (362)
T 2c0r_A          274 LIYDAIDQSGGFYRGCVD-----VDS--------RSDMNITFRLAS-EELEKEFVKASEQEGFVGLKGHR----------  329 (362)
T ss_dssp             HHHHHHHTSTTSSEESSC-----GGG--------BCSSEEEEECSC-HHHHHHHHHHHHHTTEESCBCCT----------
T ss_pred             HHHHHHHHcCCccccCCC-----hHH--------cCCcEEEEEcCC-cchHHHHHHHHHHCCCeeccCCC----------
Confidence            888889887533112111     110        134678898864 24556777777666765543311          


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                     ..+.||||++..+.++.++.+.++|+
T Consensus       330 ---------------~~~~iRis~~~~~~~e~i~~l~~~l~  355 (362)
T 2c0r_A          330 ---------------SVGGLRASIYNAVPYESCEALVQFME  355 (362)
T ss_dssp             ---------------TTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ---------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                           02469999996555555555555554

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.88  E-value=2.9e-21  Score=202.34  Aligned_cols=286  Identities=15%  Similarity=0.090  Sum_probs=176.5

Q ss_pred             HHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH-hcccCCcEEEEeCC-----CCHH
Q 009523          205 VVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP-----ADME  277 (532)
Q Consensus       205 ~Le~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~-~l~~~Gv~v~~vd~-----~dle  277 (532)
                      .+++.+++++|.+.. +++++|++|+..++.+++++||+|+++.++|++....... .....++.+..++.     .|++
T Consensus        75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  154 (417)
T 3n0l_A           75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE  154 (417)
T ss_dssp             HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred             HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence            344588999998655 8899999999999999999999999999999875432111 11223444555443     4899


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCCcEEEECCccccCC
Q 009523          278 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGG  352 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~gaDivv~S~sK~lgg  352 (532)
                      +|++++++.++++|++++|+|  |.+.|+++|.++|++||+++|+|+++..+..     ..+.. ++|+++.|+||+++|
T Consensus       155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g  231 (417)
T 3n0l_A          155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG  231 (417)
T ss_dssp             HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred             HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence            999999733699999887775  8899999999999999999999999643221     11222 479999999999966


Q ss_pred             CCCcEEEEEEeC-hHHHHHHHHHhhhc-CCCccHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Q 009523          353 HNDVLAGSISGS-GKLVTQIRNLHHVL-GGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKILEAHPKVKRVH  425 (532)
Q Consensus       353 ~gd~~gG~lv~~-~~li~~l~~~~~~~-G~~~~~~~a~l~l~~l-----~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~  425 (532)
                      +.   +|+++++ +++++.++...... .+...+.....+...+     +.+..+.++..++++++.+.|++ .++. +.
T Consensus       232 ~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~-~~  306 (417)
T 3n0l_A          232 PR---GGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFK-LV  306 (417)
T ss_dssp             CS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE-EG
T ss_pred             CC---eeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCce-ec
Confidence            53   7999998 68888877654321 1122222211111111     33455666777888888998887 3442 21


Q ss_pred             CCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCC
Q 009523          426 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM  505 (532)
Q Consensus       426 ~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~  505 (532)
                      .++               ..++++++.+.+.......+.+.|...++.++.+..... ..|                ...
T Consensus       307 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~-~~~----------------~~~  354 (417)
T 3n0l_A          307 SDG---------------TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGE-IRS----------------PFI  354 (417)
T ss_dssp             GGS---------------CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTC-CSC----------------TTT
T ss_pred             cCC---------------CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCC-Ccc----------------cCC
Confidence            111               134578888753211223333344444666554321100 000                012


Q ss_pred             CCeEEEEecC--------CCHHHHHHHHHHHHh
Q 009523          506 DNLVRFSFGV--------EDFEDLKADVLQALH  530 (532)
Q Consensus       506 ~~~IRlSvG~--------ed~~dli~dL~~AL~  530 (532)
                      .+.+|+++..        ++.+.+++.|.++|+
T Consensus       355 ~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~  387 (417)
T 3n0l_A          355 TSGLRLGTPALTARGFKEKEMEIVSNYIADILD  387 (417)
T ss_dssp             CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            4579998752        556666677766664

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.88  E-value=1.3e-21  Score=205.10  Aligned_cols=269  Identities=12%  Similarity=0.098  Sum_probs=170.9

Q ss_pred             HHHHHHHHhhhC-------CCcEEEeCCH-HHHHHHHHHHhccCCC----EEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          204 VVVEEKMSALEG-------AESTVIMASG-MSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       204 ~~Le~~lA~l~g-------a~~~i~~sSG-~~Ai~~al~all~~Gd----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .+|++++|++++       .++.|++++| ++++.+++.+++++||    +|++++|+|.+....    ++..|.++..+
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~  146 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEE----TTYVRSGMYKW  146 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHH----HHTTCBTTEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHH----HHHcCCeEEEe
Confidence            789999999887       2345555555 5999999999999999    999999999976543    34456665555


Q ss_pred             CCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccccc--ccCCcEEEECCccc
Q 009523          272 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSATKF  349 (532)
Q Consensus       272 d~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l--~~gaDivv~S~sK~  349 (532)
                      +.+ .+.++   .+ ++++|++++|+||||.+++  +|++.++.+++++|+|++|..+. ..++  ..+.++++.|+||.
T Consensus       147 ~~d-~~~l~---~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~  218 (391)
T 3bwn_A          147 EGD-AWGFD---KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKI  218 (391)
T ss_dssp             EEE-STTCC---CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHH
T ss_pred             cCC-HHHcC---CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-CCccccCCCCeEEEEechhh
Confidence            432 23332   23 6899999999999999997  45442233349999999987421 1112  34678999999999


Q ss_pred             cCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHH
Q 009523          350 IGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--------------LHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       350 lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t--------------l~~r~~~~~~~a~~la~~  414 (532)
                      +|.+| .+.|++++ ++++++.+.........+.+...+.++...++.              +....+...++++.+.+.
T Consensus       219 ~g~~G-lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (391)
T 3bwn_A          219 TGHAG-SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREV  297 (391)
T ss_dssp             HSCGG-GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCc-cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            98776 45688886 889998888766543444566655555444443              233344455777888889


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      |+++|++. +..|. .+...+  ........|.++|+.++.. +....+   ++..++.+..|..+              
T Consensus       298 L~~~~~~~-~~~p~-~~~~~f--~~~~~~~~g~~~~~~~~~~-~~~~~~---l~~~gV~v~pg~~f--------------  355 (391)
T 3bwn_A          298 VKESDAFT-LPKYP-EAFCNY--FGKSLESYPAFAWLGTKEE-TDLVSE---LRRHKVMSRAGERC--------------  355 (391)
T ss_dssp             HHTCSSEE-CCCCC-CEEETT--TTEEECCCCSEEEEEESSS-CCHHHH---HHHTTEECEEGGGG--------------
T ss_pred             HHhCCCcc-cccCC-cccccc--ccccCCCcceEEEecCCcH-HHHHHH---HHHCCEEEccCCCC--------------
Confidence            98876542 22221 000000  0000012355789999742 223333   33346777766543              


Q ss_pred             CHHHHHhcCCCCCeEEEEecC
Q 009523          495 SQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG~  515 (532)
                              |..+++||||++.
T Consensus       356 --------g~~~~~iRis~~~  368 (391)
T 3bwn_A          356 --------GSDKKHVRVSMLS  368 (391)
T ss_dssp             --------TCCTTEEEEESCS
T ss_pred             --------CCCCCEEEEEecC
Confidence                    1135799999996

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.88  E-value=4e-21  Score=200.85  Aligned_cols=212  Identities=12%  Similarity=0.049  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHhhhC--------CCcEEE--eCCHHHHHHHHHHHhc---cCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          202 TTVVVEEKMSALEG--------AESTVI--MASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       202 ~~~~Le~~lA~l~g--------a~~~i~--~sSG~~Ai~~al~all---~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      ...+++++++++++        .++.++  +++|++|+.+++..+.   ++||+|++++|+|.+....    ++..|.++
T Consensus        72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~  147 (401)
T 7aat_A           72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPI----FRDAGLQL  147 (401)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHH----HHHTTCEE
T ss_pred             CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHH----HHHcCCee
Confidence            35678888888764        345554  6777799998877654   8999999999999986544    44567777


Q ss_pred             EEeCCC-------CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcccc--
Q 009523          269 TVIDPA-------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA--  334 (532)
Q Consensus       269 ~~vd~~-------dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~~--  334 (532)
                      ..++.+       |++++++.+++  .++++|++++|+||||.+++   +++|+++|+++|+++|+|++|........  
T Consensus       148 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~  227 (401)
T 7aat_A          148 QAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINR  227 (401)
T ss_dssp             EEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred             EeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccc
Confidence            776532       67766666642  26899999999999998876   67888899999999999999875432110  


Q ss_pred             ---------cccCCcEEEECCccccCCCCCcEEEEEEe---ChH----HHHHHHHHhhhcCCCccHHHHHHHHHhH----
Q 009523          335 ---------LSLGADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGM----  394 (532)
Q Consensus       335 ---------l~~gaDivv~S~sK~lgg~gd~~gG~lv~---~~~----li~~l~~~~~~~G~~~~~~~a~l~l~~l----  394 (532)
                               ......+++.|+||.+|.+|.. .|+++.   +++    +.+.++..........+...+..+...+    
T Consensus       228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~R-iG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  306 (401)
T 7aat_A          228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGER-AGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPE  306 (401)
T ss_dssp             HTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHH
T ss_pred             cHHHHHHHHhcCCcEEEEecCCcccccccCc-eEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHH
Confidence                     1124568999999999977744 566654   555    3444444433333333344433332222    


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          395 ------KTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       395 ------~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                            +.+....++..++++++.+.|+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          307 LRKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  223334455567777888888765

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.88  E-value=2.8e-22  Score=205.91  Aligned_cols=274  Identities=11%  Similarity=0.033  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEeCCH-HHHHHHHHHHhccC---CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          202 TTVVVEEKMSALEGAE---STVIMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga~---~~i~~sSG-~~Ai~~al~all~~---Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..+++++++++++|.+   ++++++++ ++|+.+++.+++.+   ||+|+++.+.|...     ..+...| ++++++. 
T Consensus        49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~  122 (360)
T 1w23_A           49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAAST  122 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeecc
Confidence            5788999999999975   35556666 79999999998865   56677766555431     2245568 8777753 


Q ss_pred             -----CCHHHHHH-hhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCc
Q 009523          274 -----ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT  347 (532)
Q Consensus       274 -----~dle~Le~-al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~s  347 (532)
                           .|+++|++ ++++ +|++|++++|+||||.+.|     ++++++|+++|+|++++.+.....+. ..|+++.|+|
T Consensus       123 ~~~~~~d~~~l~~~~i~~-~~k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~s  195 (360)
T 1w23_A          123 KANSYQSIPDFSEFQLNE-NDAYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQ  195 (360)
T ss_dssp             GGGTSCSCCCGGGCCCCT-TEEEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred             cccCcCCccchHhhccCC-CCCEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCcCcc-cCCEEEEEcc
Confidence                 36788888 8876 7999999999999999987     34448999999999987653211121 1289999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHHHh------------hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRNLH------------HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  409 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~~~------------~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a~  409 (532)
                      |++|+.|   .|+++++++++++++...            ....++.+....+.+..+++.      +....++..++++
T Consensus       196 K~~~~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 1w23_A          196 KNLGPSG---VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAK  272 (360)
T ss_dssp             TTTSCTT---CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccCCCC---cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9998665   588888887776554321            011123444444444444443      3445666678888


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.+.|++.+++..+..     .|..        ..+.+++|.+++ ......+++.|...++.+..|..          
T Consensus       273 ~l~~~L~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~----------  328 (360)
T 1w23_A          273 IIYDTIDESNGFYVGHA-----EKGS--------RSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLNGHR----------  328 (360)
T ss_dssp             HHHHHHHTTTTSSEESS-----CGGG--------BCSSEEEEECSS-HHHHHHHHHHHHHTTEESCBCCT----------
T ss_pred             HHHHHHHHccCcccccC-----Cchh--------ccCcEEEEEcCC-CccHHHHHHHHHHCCeeeecCCC----------
Confidence            89999988764311110     0110        124589999874 24456777777666666544311          


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                     .++.||||++..++++.++.+.++|+
T Consensus       329 ---------------~~~~iRis~~~~~~~~~i~~~~~~l~  354 (360)
T 1w23_A          329 ---------------SVGGCRASIYNAVPIDACIALRELMI  354 (360)
T ss_dssp             ---------------TTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ---------------CCCeEEEEecCCCCHHHHHHHHHHHH
Confidence                           14689999997665655666655554

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.88  E-value=6.9e-21  Score=203.22  Aligned_cols=287  Identities=12%  Similarity=-0.051  Sum_probs=189.3

Q ss_pred             HHHHHHHHHhhhCCC--c-----EEEeCCHHHHHHHHHHHhcc--------CC-----CEEEEcCCCCcchHHHHHHhcc
Q 009523          203 TVVVEEKMSALEGAE--S-----TVIMASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~-----~i~~sSG~~Ai~~al~all~--------~G-----d~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      .+++++.+++++|.+  .     ++++++|++|+.+++.++..        +|     ++|++++ .|....    ..+.
T Consensus        83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~~  157 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFAR  157 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHHH
Confidence            345566778899874  2     78888999999999887754        55     5999998 776543    3455


Q ss_pred             cCCcEEEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC------CCEEEEECCCCCCC
Q 009523          263 KMGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPL  330 (532)
Q Consensus       263 ~~Gv~v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~------gi~lIvDet~a~~~  330 (532)
                      ..|++++.++.+      |+++|++++++ +|++|++++|+||||.+.|+++|+++|+++      |+++++|++|+.+.
T Consensus       158 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~  236 (452)
T 2dgk_A          158 YWDVELREIPMRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  236 (452)
T ss_dssp             HTTCEEEECCCBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HcCceEEEEecCCCCCeECHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence            678999888753      79999999987 699999999999999999999999999995      99999999987643


Q ss_pred             c---cc--cc---ccCCcEEEECCccccCCCCCcEEEEEEeCh-HHH-HHHHHHhhhcC----------CCc--cHHHHH
Q 009523          331 N---QK--AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLV-TQIRNLHHVLG----------GAL--NPNAAY  388 (532)
Q Consensus       331 ~---~~--~l---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li-~~l~~~~~~~G----------~~~--~~~~a~  388 (532)
                      .   ..  +.   ..++|+++.|+||++.++.  ..|+++.++ +++ +.+.......+          ...  .....|
T Consensus       237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  314 (452)
T 2dgk_A          237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQY  314 (452)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHH
T ss_pred             HHhhCccchhhcCCCCCcEEEECcccccCCCC--CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHH
Confidence            1   11  11   2378999999999886554  267777754 333 33321111111          111  233444


Q ss_pred             HHHHh--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH---HHHHHH
Q 009523          389 LIIRG--MKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL---TATIKF  463 (532)
Q Consensus       389 l~l~~--l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~---~~~~~~  463 (532)
                      .+++.  .+.+..++++..++++++.+.|++.+++..+ .|+.+.            ...+++.|.+++..   .....+
T Consensus       315 aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~------------~~~~~v~f~~~~~~~~~~~~~~l  381 (452)
T 2dgk_A          315 YEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI-CTGRPD------------EGIPAVCFKLKDGEDPGYTLYDL  381 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE-EECCTT------------TBSSEEEEEECTTCCCSCCHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCCCCC------------CCeEEEEEEecCcccccCCHHHH
Confidence            44443  3456677788889999999999998876433 332110            13568999987421   112455


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                      .+.|...++.++.  +    ..|...              -..+.+|+|++..    +.+.++++|+++++
T Consensus       382 ~~~L~~~Gi~v~~--~----~~~~~~--------------~~~~~lRis~~~~~t~e~id~li~~l~~~~~  432 (452)
T 2dgk_A          382 SERLRLRGWQVPA--F----TLGGEA--------------TDIVVMRIMCRRGFEMDFAELLLEDYKASLK  432 (452)
T ss_dssp             HHHHHHTTCBCCE--E----ECSTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCeeee--e----eCCccc--------------CCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            5665544443321  1    111100              0245899999974    45555666655544

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.88  E-value=4.8e-21  Score=203.13  Aligned_cols=292  Identities=14%  Similarity=0.095  Sum_probs=192.1

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhC--C-CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhccc---
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEG--A-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPK---  263 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~g--a-~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~---  263 (532)
                      .|.+.++.++...+|+++|+++++  . +++++++||++|+..+++.+  ..++++||+.++.|++...........   
T Consensus        77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  156 (439)
T 3dxv_A           77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ  156 (439)
T ss_dssp             CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred             CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence            455677888999999999999984  4 57889999999999999875  346788888899987754322111100   


Q ss_pred             --------CCcEEEEeCCC----------CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCC
Q 009523          264 --------MGITATVIDPA----------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGA  318 (532)
Q Consensus       264 --------~Gv~v~~vd~~----------dle~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi  318 (532)
                              ....+..++..          |+++|+++++   +.++++|++++++|++|.+.+    +++|.++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~  236 (439)
T 3dxv_A          157 ADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI  236 (439)
T ss_dssp             -------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred             hhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence                    00012223333          5899999993   336999999999999999998    9999999999999


Q ss_pred             EEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 009523          319 IVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR  392 (532)
Q Consensus       319 ~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~  392 (532)
                      ++|+||+|...      ..........|++  |++|.+++ | ...|++++++++++.+......... .++..+..++.
T Consensus       237 ~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~a  311 (439)
T 3dxv_A          237 LVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-G-LPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLA  311 (439)
T ss_dssp             EEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-T-SCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHH
T ss_pred             EEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-C-cceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHH
Confidence            99999998632      1122223446776  78999996 4 3678999998888776543222223 56776666666


Q ss_pred             hHHHHH--HHHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc-------CCHHH
Q 009523          393 GMKTLH--LRVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD-------GDLTA  459 (532)
Q Consensus       393 ~l~tl~--~r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~-------g~~~~  459 (532)
                      .++.+.  ..+++..++.+++.+.|++    ++.+..+                  ++.|.++++++.       .....
T Consensus       312 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~  373 (439)
T 3dxv_A          312 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI------------------RGRGLACGMELVCDRQSREPARAE  373 (439)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCCHHH
Confidence            665432  2344455556666665544    3433222                  235778999883       12344


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA  531 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~~  531 (532)
                      ...+.+.+...++.+..|+                         ..++.+||+++..    +.+++++.|.+++++
T Consensus       374 ~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  424 (439)
T 3dxv_A          374 TAKLIYRAYQLGLVVYYVG-------------------------MNGNVLEFTPPLTITETDIHKALDLLDRAFSE  424 (439)
T ss_dssp             HHHHHHHHHHHTEECEEES-------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCcEEeecC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            5566666654455544331                         1247899987654    345556666666543

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.88  E-value=6.5e-21  Score=199.94  Aligned_cols=215  Identities=14%  Similarity=0.089  Sum_probs=149.5

Q ss_pred             CchhHHHHHHHHHhhh-CC-------CcEEE--eCCHHHHHHHHHH--HhccCC-----CEEEEcCCCCcchHHHHHHhc
Q 009523          199 GNPTTVVVEEKMSALE-GA-------ESTVI--MASGMSASTVMLL--ALVPAG-----GHIVTTTDCYRKTRIFIETVL  261 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~-ga-------~~~i~--~sSG~~Ai~~al~--all~~G-----d~VIv~~~~y~~t~~~~~~~l  261 (532)
                      +.+...+|++++++++ +.       +++++  +++|++|+.+++.  .++.+|     |+|+++.|+|++...    .+
T Consensus        72 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~----~~  147 (412)
T 1ajs_A           72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG----VF  147 (412)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH----HH
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH----HH
Confidence            3445678999999988 42       56777  8888899999854  556899     999999999998553    34


Q ss_pred             ccCCcE-EEEeCC---C----CHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCC
Q 009523          262 PKMGIT-ATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       262 ~~~Gv~-v~~vd~---~----dle~Le~al~~~--~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~  328 (532)
                      ...|.+ +..++.   +    |+++|++++++.  ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..
T Consensus       148 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~  227 (412)
T 1ajs_A          148 TTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQG  227 (412)
T ss_dssp             HHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred             HHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc
Confidence            456777 766654   2    789999988642  5789989999999999987   55799999999999999999765


Q ss_pred             CCcc----c--c---cc--cCCcEEEECCccccCCCCCcEEEEEEe---ChHH----HHHHHHHhhhcCCCccHHHHHHH
Q 009523          329 PLNQ----K--A---LS--LGADLVLHSATKFIGGHNDVLAGSISG---SGKL----VTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       329 ~~~~----~--~---l~--~gaDivv~S~sK~lgg~gd~~gG~lv~---~~~l----i~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                      ....    .  +   +.  ...++++.|+||.+|++| ...|++++   ++++    ++.++..........++..++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  306 (412)
T 1ajs_A          228 FASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIV  306 (412)
T ss_dssp             TTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHH
T ss_pred             ccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHH
Confidence            4221    1  1   11  123488999999999866 35688887   7764    44444422222222344444444


Q ss_pred             HHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          391 IRGMK----------TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       391 l~~l~----------tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ...++          .+....++..++.+.+.+.|++.
T Consensus       307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (412)
T 1ajs_A          307 ARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL  344 (412)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44443          23334445556777788888775

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.88  E-value=7.2e-21  Score=203.07  Aligned_cols=224  Identities=13%  Similarity=0.107  Sum_probs=154.0

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh-CCC-------cEEE--eCCHHHHHHH--HHHHhccCCCEEEEcCCCCcchHHHHHH
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE-GAE-------STVI--MASGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIET  259 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~-ga~-------~~i~--~sSG~~Ai~~--al~all~~Gd~VIv~~~~y~~t~~~~~~  259 (532)
                      .+.|.  +.+...++++++++++ |.+       +.++  +++|++|+.+  .+.+++.+||+|++++|+|.+....+..
T Consensus        87 ~~~Y~--~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~  164 (448)
T 3meb_A           87 NKEYP--PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDK  164 (448)
T ss_dssp             CCSCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHH
T ss_pred             CCCCC--CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHh
Confidence            34444  3345678999999987 653       5666  7788899987  5567788999999999999987655542


Q ss_pred             hcccCCcEEEEeCC---C-----CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCC
Q 009523          260 VLPKMGITATVIDP---A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~---~-----dle~Le~al~~--~~tklV~lesP~NptG~v~dl~---~I~~la~~~gi~lIvDet~  326 (532)
                      .++..|.++..++.   +     |+++|++++++  .++++|++++|+||||.+++.+   +|+++|+++|+++|+|++|
T Consensus       165 ~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay  244 (448)
T 3meb_A          165 VFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY  244 (448)
T ss_dssp             HHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             hHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence            23366777777654   2     78999999873  2588999999999999999854   5999999999999999997


Q ss_pred             CCCCccc------cc----ccC-CcEEEECCccccCCCCCcEEEEE--Ee---------Ch----HHHHHHHHHhhhcCC
Q 009523          327 ATPLNQK------AL----SLG-ADLVLHSATKFIGGHNDVLAGSI--SG---------SG----KLVTQIRNLHHVLGG  380 (532)
Q Consensus       327 a~~~~~~------~l----~~g-aDivv~S~sK~lgg~gd~~gG~l--v~---------~~----~li~~l~~~~~~~G~  380 (532)
                      .......      ..    ..+ ..+++.|+||.+|.+|. ..|++  ++         ++    ++++.+....+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  323 (448)
T 3meb_A          245 QGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGE-RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWS  323 (448)
T ss_dssp             TTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             ccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccc-cceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccC
Confidence            7543211      01    123 34789999999997764 35665  54         34    455555554443333


Q ss_pred             CccHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          381 ALNPNAAYLIIRGMK----------TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~----------tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ..+...++.+...++          .+....++..++++.+.+.|+++
T Consensus       324 ~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          324 MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555544443332          23444455567777888888765

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.80  E-value=3e-24  Score=224.32  Aligned_cols=284  Identities=15%  Similarity=0.113  Sum_probs=183.1

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----g----a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..++++++++++    |    .++++++++|++|+.+++.+++++||+|+++.+.|++...    .+...|.++..++. 
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~  143 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFAR----SVRLNNRKLVSNSLK  143 (392)
Confidence            667777777764    3    2455666677799999999999999999999999998653    34455666665543 


Q ss_pred             -------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc-----cc--c-
Q 009523          274 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA--L-  335 (532)
Q Consensus       274 -------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~-----~~--l-  335 (532)
                             .|+++|++++++.++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......     ..  + 
T Consensus       144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  223 (392)
T 3b1d_A          144 EENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVS  223 (392)
Confidence                   36888999887336899999999999999987   889999999999999999997653210     11  1 


Q ss_pred             c--cCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcC-CCccHHHHHHHHHhHHH----HHHHHHHHHHH
Q 009523          336 S--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LHLRVQQQNST  407 (532)
Q Consensus       336 ~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G-~~~~~~~a~l~l~~l~t----l~~r~~~~~~~  407 (532)
                      .  .+.++++.|+||.++.+| ...|++++++ ++++.++......+ ...++..++.+...++.    +....++..++
T Consensus       224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (392)
T 3b1d_A          224 PDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEEN  302 (392)
Confidence            1  345689999999997554 4578888764 58888776554442 12344444444444432    22233344455


Q ss_pred             HHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCccccccc
Q 009523          408 ALRMAKILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       408 a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~-~~~i~vs~G~~~sl~~~  485 (532)
                      ++.+.+.|++ +|++..+ .|                ..+.+++++++........+.+.|. ..++.+..|..+.    
T Consensus       303 ~~~l~~~l~~~~~~~~~~-~~----------------~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~----  361 (392)
T 3b1d_A          303 IQFAVEYFAQEAPRLKVM-KP----------------QGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG----  361 (392)
Confidence            6666666665 3443211 11                0233446777531123455666663 5576666654321    


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL  529 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL  529 (532)
                      +                 ..++++||+++..  +.++.++.|.++|
T Consensus       362 ~-----------------~~~~~iRi~~~~~~e~i~~~l~~l~~~l  390 (392)
T 3b1d_A          362 S-----------------EGELHARLNIAAPKSLVEEICKRIVCCL  390 (392)
Confidence            0                 1256899999863  3444455555544

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.87  E-value=1.9e-21  Score=203.00  Aligned_cols=292  Identities=15%  Similarity=0.107  Sum_probs=187.1

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC--cEEEEe
Q 009523          199 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le----~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G--v~v~~v  271 (532)
                      +++...+++    +++++++|.+.. +++++|++|+..++.+++++||+|+++.+.|+++.... ..+...|  +++..+
T Consensus        63 ~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~  141 (405)
T 2vi8_A           63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAY  141 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhccc-chhhhccceeEEEec
Confidence            345556665    699999998765 45789999999999999999999999999998753210 0011112  355555


Q ss_pred             CC------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc---ccccc-cCCcE
Q 009523          272 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKALS-LGADL  341 (532)
Q Consensus       272 d~------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~---~~~l~-~gaDi  341 (532)
                      +.      .|+++|++++++.++++|++ +|+|. |...|+++|.++|+++|+++|+|++++.+..   ..+.. .+.|+
T Consensus       142 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di  219 (405)
T 2vi8_A          142 GVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHF  219 (405)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSE
T ss_pred             ccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCE
Confidence            42      37999999987435889888 55554 5677899999999999999999999873211   11111 15799


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC-CCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHH
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G-~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~la~~L  415 (532)
                      ++.|+||+++|+.   ||++++++++++.++.....+. +..++.....+...++     .+....++..++++++.+.|
T Consensus       220 ~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  296 (405)
T 2vi8_A          220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCCC---CeEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999998543   4999999888888776542221 2223333222222332     33455666778888888888


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      ++. ++. +..|.               +.+.++++.++........+.+.|...++.+..|..      |.   |. ..
T Consensus       297 ~~~-g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~------~~---~~-~~  349 (405)
T 2vi8_A          297 QNE-GFT-LVSGG---------------TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTI------PY---DP-ES  349 (405)
T ss_dssp             HHT-TCE-EGGGS---------------CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECC------TT---CS-SC
T ss_pred             HhC-CCe-EecCC---------------CCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcC------cc---cc-CC
Confidence            876 442 32221               136688998863101233444555445666665532      10   00 00


Q ss_pred             HHHHHhcCCCCCeEEEEecC--------CCHHHHHHHHHHHHh
Q 009523          496 QSERLKYGIMDNLVRFSFGV--------EDFEDLKADVLQALH  530 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlSvG~--------ed~~dli~dL~~AL~  530 (532)
                             ...++.+|||++.        ++.+.+++.|.++++
T Consensus       350 -------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~  385 (405)
T 2vi8_A          350 -------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             -------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             -------CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence                   0124679999994        455666666666664

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.87  E-value=9.9e-21  Score=200.11  Aligned_cols=285  Identities=14%  Similarity=0.089  Sum_probs=182.9

Q ss_pred             CCCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhc---c----CCCEEEEcCCCCcchHHHHHHhcc---
Q 009523          195 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETVLP---  262 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all---~----~Gd~VIv~~~~y~~t~~~~~~~l~---  262 (532)
                      +++|.++...+++++++++++  .+++++++||++|+..+++.+.   +    |||+||+.++.|++..........   
T Consensus        80 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~  159 (429)
T 1s0a_A           80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCch
Confidence            456778888999999999996  4678888899999999988653   2    699999999999874322211110   


Q ss_pred             ---------cCCcEEEEeC---------CCCHHHHHHhhcC--CCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCC
Q 009523          263 ---------KMGITATVID---------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKG  317 (532)
Q Consensus       263 ---------~~Gv~v~~vd---------~~dle~Le~al~~--~~tklV~lesP-~NptG~v~d----l~~I~~la~~~g  317 (532)
                               ..++....++         ..|+++|++++++  .++++|+++.+ +||+|.+.+    +++|.++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~  239 (429)
T 1s0a_A          160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG  239 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred             hhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence                     0133333333         1478999998872  26888888766 799998887    999999999999


Q ss_pred             CEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--h-hcC--CCccHHH
Q 009523          318 AIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--H-VLG--GALNPNA  386 (532)
Q Consensus       318 i~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~-~~G--~~~~~~~  386 (532)
                      +++|+||+|....      .........|++  |++|.++++ -...|++++++++++.+....  . ..+  ...++..
T Consensus       240 ~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~G-~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~  316 (429)
T 1s0a_A          240 ILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTGG-TMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA  316 (429)
T ss_dssp             CEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTS-SSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred             CEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccCC-CccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHH
Confidence            9999999986321      122233456776  578999863 134788889998888876521  0 011  2235666


Q ss_pred             HHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhC---CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          387 AYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH---PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       387 a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~~---p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      +..+...++.+.  ...++..++.+++.+.|++.   |.+..+                  .+.|.++++++++. ....
T Consensus       317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------~~~g~~~~~~~~~~-~~~~  377 (429)
T 1s0a_A          317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV------------------RVLGAIGVVETTHP-VNMA  377 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEE------------------EEETTEEEEEESSC-BCHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEE------------------EEeeEEEEEEECCc-ccHH
Confidence            665555665432  23445556677777777653   222111                  12467899998742 1233


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      .+.+.|...++.+..+                            .+.||||++...+++.++.+.++|
T Consensus       378 ~l~~~l~~~Gi~v~~~----------------------------~~~iRis~~~~~t~e~i~~~~~~l  417 (429)
T 1s0a_A          378 ALQKFFVEQGVWIRPF----------------------------GKLIYLMPPYIILPQQLQRLTAAV  417 (429)
T ss_dssp             HHHHHHHHTTEECCCB----------------------------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEecc----------------------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence            4555554345544310                            368999987654444444444444

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.87  E-value=5.3e-21  Score=204.11  Aligned_cols=253  Identities=17%  Similarity=0.185  Sum_probs=167.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc----CCCE---EEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----AGGH---IVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~----~Gd~---VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ..+...+|+++|+++++.+++++++||++|+.+++.++++    +||+   ||++.+.|..+...    +...|.++..+
T Consensus        74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~----~~~~g~~~~~~  149 (467)
T 1ax4_A           74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAH----VELNGCKAINI  149 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHH----HHHTTCEEEEC
T ss_pred             cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHH----HhccCCceecc
Confidence            3467889999999999998899999999999999999988    9998   98885444443322    33345555543


Q ss_pred             C---------------CCCHHHHHHhhcC---CCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEECCCCC-
Q 009523          272 D---------------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT-  328 (532)
Q Consensus       272 d---------------~~dle~Le~al~~---~~tklV~lesP~Npt-G~v~d---l~~I~~la~~~gi~lIvDet~a~-  328 (532)
                      +               ..|+++|++++++   .++++|++++|+||+ |.+++   +++|+++|++||+++|+|+++.. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~  229 (467)
T 1ax4_A          150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  229 (467)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence            1               1378999999974   259999999999999 88766   57899999999999999998442 


Q ss_pred             ----------CC-cccccc------cCCcEEEECCccccCCCCCcEEEEEEeC-h-HHHHHHHHHhhhcCC-----CccH
Q 009523          329 ----------PL-NQKALS------LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLVTQIRNLHHVLGG-----ALNP  384 (532)
Q Consensus       329 ----------~~-~~~~l~------~gaDivv~S~sK~lgg~gd~~gG~lv~~-~-~li~~l~~~~~~~G~-----~~~~  384 (532)
                                .+ ......      ..+|+++.|+||.++.+   +||+++++ + ++++.+.......++     ..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~  306 (467)
T 1ax4_A          230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG  306 (467)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred             cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence                      11 111111      24789999999999865   36888887 7 888877654332111     1222


Q ss_pred             HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEE-------EcC
Q 009523          385 NAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE-------VDG  455 (532)
Q Consensus       385 ~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~-------l~g  455 (532)
                      .....+..+++...  .++++..++++.+.+.|++ +++. +..|.                .|..+++.       ++.
T Consensus       307 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~  368 (467)
T 1ax4_A          307 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE-AGIP-IQYPT----------------GGHAVFVDCKKLVPQIPG  368 (467)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TTCC-BCSSC----------------CSSEEEEESTTTCTTSCG
T ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh-CCCC-cccCC----------------CceEEEEehhhhcccccc
Confidence            22221122343321  2455555777888888877 3432 11121                34567777       332


Q ss_pred             CHHHHHHHHHHc-CCCceeecC
Q 009523          456 DLTATIKFIDAL-KIPYIAPSF  476 (532)
Q Consensus       456 ~~~~~~~~l~~L-~~~~i~vs~  476 (532)
                      .......+.+.| ...++.++.
T Consensus       369 ~~~~~~~l~~~L~~~~gv~v~~  390 (467)
T 1ax4_A          369 DQFPAQAVINALYLESGVRAVE  390 (467)
T ss_dssp             GGCHHHHHHHHHHHHHCEECEE
T ss_pred             CCCCHHHHHHHHHHhcCceeee
Confidence            112345666666 555777766

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.87  E-value=1e-20  Score=198.11  Aligned_cols=255  Identities=12%  Similarity=0.083  Sum_probs=162.2

Q ss_pred             chhHHHHHHHHHhh--hC-C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE-EEEeCC
Q 009523          200 NPTTVVVEEKMSAL--EG-A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDP  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l--~g-a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~-v~~vd~  273 (532)
                      .+...+|+++++++  .| .  +++++++++++++..++ .++++||+|+++.|+|++....    +...|.+ +..++.
T Consensus        74 ~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~  148 (400)
T 3asa_A           74 DFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDI----ARLTGAKEIIALPC  148 (400)
T ss_dssp             TTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHH----HHHTTCSEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHH----HHHcCCcceEeccc
Confidence            34567899999999  46 3  45677777779998865 5568999999999999886533    3445776 777764


Q ss_pred             CCHHHHHHhhcC-CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCC-----ccccccc----CCc
Q 009523          274 ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSL----GAD  340 (532)
Q Consensus       274 ~dle~Le~al~~-~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~-----~~~~l~~----gaD  340 (532)
                      ++.+.+...+++ .++++|++++|+||||.++|   +++|+++|+++|+++|+|++|....     ......+    +.+
T Consensus       149 ~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  228 (400)
T 3asa_A          149 LQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCA  228 (400)
T ss_dssp             CGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTE
T ss_pred             chhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCce
Confidence            321111111111 26899999999999999998   5578889999999999999987421     1112222    245


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHH-------HHHHHHHh-hhcCCCccHHHHHHHHHhHHH--HHHHHHHHHHHHHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKL-------VTQIRNLH-HVLGGALNPNAAYLIIRGMKT--LHLRVQQQNSTALR  410 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~l-------i~~l~~~~-~~~G~~~~~~~a~l~l~~l~t--l~~r~~~~~~~a~~  410 (532)
                      +++.|+||.+|.+| ...|++++++++       ++.+.... ....++.++.....+...++.  +....++..++++.
T Consensus       229 i~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  307 (400)
T 3asa_A          229 IEINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDL  307 (400)
T ss_dssp             EEEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             EEEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            89999999998655 457889988877       66554322 111223455555544445543  23344555677788


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEE-EcCCHHHHHHHHHHcC-CCceeecCCCc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE-VDGDLTATIKFIDALK-IPYIAPSFGGC  479 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~-l~g~~~~~~~~l~~L~-~~~i~vs~G~~  479 (532)
                      +.+.|++. ++. +..|.                .|.++++. ++.+. ....+.+.|. ..++.+..|..
T Consensus       308 l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~l~~~~gv~v~~g~~  359 (400)
T 3asa_A          308 LRKALLAT-GFE-VFGGE----------------HAPYLWVKPTQANI-SDRDLFDFFLREYHIAITPGIG  359 (400)
T ss_dssp             HHHHHHHT-TCE-EEECS----------------SSSEEEEECCCTTC-CTTTHHHHHHHHHSEECEEGGG
T ss_pred             HHHHHHHC-CCe-eeCCC----------------CceEEEEeccCCCC-CHHHHHHHHHHhCCEEEeChhH
Confidence            88888876 443 22121                35688998 76321 1122333332 23666666643

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.87  E-value=4.9e-21  Score=200.58  Aligned_cols=252  Identities=16%  Similarity=0.142  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH-hcccCCcEEEEe--C---CC
Q 009523          202 TTVVVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI--D---PA  274 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~-~l~~~Gv~v~~v--d---~~  274 (532)
                      ..+.+++.+++++|.+.. +++++|++|+..++.+++++||+|+++.+.|+++...... .+...++....+  +   ..
T Consensus        77 ~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (420)
T 3gbx_A           77 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKI  156 (420)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSC
T ss_pred             HHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCc
Confidence            344456899999998654 5689999999999999999999999999999874311111 111112232222  2   25


Q ss_pred             CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCCcEEEECCccc
Q 009523          275 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKF  349 (532)
Q Consensus       275 dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~gaDivv~S~sK~  349 (532)
                      |+++|+++++++++++|++++|+||  .+.|+++|.++|++||+++|+|++++.+..     ..... .+|+++.|+||+
T Consensus       157 d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~  233 (420)
T 3gbx_A          157 DYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKT  233 (420)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGG
T ss_pred             CHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccC
Confidence            8999999997645899999999986  478999999999999999999999754321     12222 489999999999


Q ss_pred             cCCCCCcEEEEEEeCh---HHHHHHHHHhhh--cCCCccHHHHHH--HH-HhH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          350 IGGHNDVLAGSISGSG---KLVTQIRNLHHV--LGGALNPNAAYL--II-RGM-KTLHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~---~li~~l~~~~~~--~G~~~~~~~a~l--~l-~~l-~tl~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      ++|+.   ||++++++   ++.+.++.....  .+....+..+.+  ++ ..+ +.+..+.++..++++++.+.|.+. +
T Consensus       234 ~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  309 (420)
T 3gbx_A          234 LAGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-G  309 (420)
T ss_dssp             GCSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CCCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            97553   69999987   777776654322  222222222221  11 111 334555667778888888888873 3


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~  476 (532)
                      +. +..++               ..++++++.++........+.+.|...++.+..
T Consensus       310 ~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~  349 (420)
T 3gbx_A          310 YK-VVSGG---------------TENHLFLLDLVDKNLTGKEADAALGRANITVNK  349 (420)
T ss_dssp             CE-EGGGS---------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEE
T ss_pred             Ce-eccCC---------------CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEecc
Confidence            32 21111               135688888753111223334444444555544

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.87  E-value=1e-20  Score=199.09  Aligned_cols=286  Identities=15%  Similarity=0.176  Sum_probs=183.7

Q ss_pred             CCCCchhHHHHHHHHHhhh-C-C-CcEEEeCCHHHHHHHHHH---HhccCCCEEEEcCCCCcchHHHHHHhcc-------
Q 009523          196 GRYGNPTTVVVEEKMSALE-G-A-ESTVIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLP-------  262 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~-g-a-~~~i~~sSG~~Ai~~al~---all~~Gd~VIv~~~~y~~t~~~~~~~l~-------  262 (532)
                      .++.++...+|+++|++++ | . ++++++++|++|+.+++.   .+.++| +|++.++.|++..........       
T Consensus        79 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~  157 (426)
T 1sff_A           79 QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSA  157 (426)
T ss_dssp             TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTT
T ss_pred             cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccccc
Confidence            4456788999999999999 5 3 457778888899999988   667776 899999999875432212111       


Q ss_pred             cCCc---EEEEeCCC----------CHHHHHHhhcC----CCeeEEEEeC-CCCCCCcccC----HHHHHHHHHhCCCEE
Q 009523          263 KMGI---TATVIDPA----------DMEGLEAALNN----NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIV  320 (532)
Q Consensus       263 ~~Gv---~v~~vd~~----------dle~Le~al~~----~~tklV~les-P~NptG~v~d----l~~I~~la~~~gi~l  320 (532)
                      .++.   .+..++..          |+++|++++++    .++++|+++. ++| ||.+.+    +++|.++|++||+++
T Consensus       158 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~l  236 (426)
T 1sff_A          158 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIML  236 (426)
T ss_dssp             TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEE
T ss_pred             ccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEE
Confidence            1111   14444432          68899988862    2688998854 466 997777    999999999999999


Q ss_pred             EEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH
Q 009523          321 CIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  394 (532)
Q Consensus       321 IvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l  394 (532)
                      |+||+|.....      .+.....+|++  |+||.+++ | ...|++++++++++.+...........++..+..+...+
T Consensus       237 i~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal  312 (426)
T 1sff_A          237 IADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-G-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL  312 (426)
T ss_dssp             EEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-S-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHH
T ss_pred             EEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-C-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHH
Confidence            99999874211      12222346665  78899997 5 557999998888776653222222334666666666555


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-------CHHHHH
Q 009523          395 KTLHL--RVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-------DLTATI  461 (532)
Q Consensus       395 ~tl~~--r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-------~~~~~~  461 (532)
                      +.+..  ..++..++.+++.+.|++    ++.+..+                  .+.|.++++++.+       ......
T Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~  374 (426)
T 1sff_A          313 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFEDGDHNKPDAKLTA  374 (426)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE------------------EEETTEEEEEEBGGGCTTSBCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCChHHHH
Confidence            54432  334455666666666654    2221111                  1247799999952       123455


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                      .+.+.|...++.+..|+.                         .++.|||+++..    +.+++++.|.++++
T Consensus       375 ~l~~~l~~~gi~v~~~~~-------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  422 (426)
T 1sff_A          375 EIVARARDKGLILLSCGP-------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFD  422 (426)
T ss_dssp             HHHHHHHHTTEECEEEST-------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcEEecCCC-------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            666666555666654421                         147899999743    34445555555554

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.87  E-value=2e-20  Score=199.19  Aligned_cols=211  Identities=18%  Similarity=0.164  Sum_probs=150.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .++...+|+++|+++++.+++++++||++|+.+++.+++++||  +++.+.|++.+.   ..+...|.++..++.+    
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~  147 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTR---YHQEKNGAVFVDIVRDEAHD  147 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHH---HHHHHTTCEEEECBCGGGGC
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhH---HHHHHcCCEEEEeccccccc
Confidence            4678899999999999999999999999999999999999999  677888844321   2344568887776432    


Q ss_pred             -----------CHHHHHHhhcCCCe----eEEEEeCCCC-CCCcccC---HHHHHHHHHhCCCEEEEECCCCCC------
Q 009523          275 -----------DMEGLEAALNNNNV----SLFFTESPTN-PFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------  329 (532)
Q Consensus       275 -----------dle~Le~al~~~~t----klV~lesP~N-ptG~v~d---l~~I~~la~~~gi~lIvDet~a~~------  329 (532)
                                 |+++|++++++ ++    ++|++++|+| |||.+.+   +++|+++|++||+++|+|++++.+      
T Consensus       148 ~~~~~~~~~~~d~~~l~~~i~~-~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~  226 (456)
T 2ez2_A          148 AGLNIAFKGDIDLKKLQKLIDE-KGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIK  226 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHH-HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHh-ccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccc
Confidence                       78999999875 34    9999999999 9999987   899999999999999999997641      


Q ss_pred             -----Ccccc-------cccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhc-C----CCccHHH-HHHH
Q 009523          330 -----LNQKA-------LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G----GALNPNA-AYLI  390 (532)
Q Consensus       330 -----~~~~~-------l~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~-G----~~~~~~~-a~l~  390 (532)
                           +...+       .....|+++.|++|+++ .+  ++|++++ ++++++.++...... |    ...+... +.++
T Consensus       227 ~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a  303 (456)
T 2ez2_A          227 EQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMA  303 (456)
T ss_dssp             HHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHH
T ss_pred             ccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHH
Confidence                 11111       12346888889889866 33  4799988 678888776544321 1    1112211 1112


Q ss_pred             HHhHHHH-HHHHHHHHHHHHHHHHHHHhC
Q 009523          391 IRGMKTL-HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       391 l~~l~tl-~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ...++.+ ...+++..++.+++.+.|++.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          304 IGLREAMQYEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            2223333 344555566677777788763

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.86  E-value=1.6e-20  Score=202.58  Aligned_cols=211  Identities=16%  Similarity=0.115  Sum_probs=145.7

Q ss_pred             HHHHHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH----hcccCC--cEEEEe--
Q 009523          205 VVEEKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET----VLPKMG--ITATVI--  271 (532)
Q Consensus       205 ~Le~~lA~l~ga~~-----~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~----~l~~~G--v~v~~v--  271 (532)
                      .+++++++++|.+.     .|+++||++|+..++.++++|||+|+++++.|++.......    .....|  +.+..+  
T Consensus        94 ~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~  173 (483)
T 1rv3_A           94 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV  173 (483)
T ss_dssp             HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred             HHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence            34489999999852     48999999988888999999999999999999886421100    011112  344444  


Q ss_pred             C----CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-----cccccccCCcEE
Q 009523          272 D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLV  342 (532)
Q Consensus       272 d----~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-----~~~~l~~gaDiv  342 (532)
                      +    ..|+++|++++++.+||+|++ +++|++ .+.|+++|.++|+++|+++|+|+++..+.     ...++. ++|++
T Consensus       174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div  250 (483)
T 1rv3_A          174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVV  250 (483)
T ss_dssp             CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEE
T ss_pred             ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEE
Confidence            3    138999999998337999999 999998 99999999999999999999999976321     122333 68999


Q ss_pred             EECCccccCCCCCcEEEEEEeChH---------------HHHHHHHHh-hhcCCCccHHHHH---HHHHhH--HHHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLH-HVLGGALNPNAAY---LIIRGM--KTLHLRV  401 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~~~---------------li~~l~~~~-~~~G~~~~~~~a~---l~l~~l--~tl~~r~  401 (532)
                      +.|+||+++|+.   +|+++++++               +.+.+.... ....++.......   .++..+  ..+....
T Consensus       251 ~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~  327 (483)
T 1rv3_A          251 TTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQ  327 (483)
T ss_dssp             EEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             EecCcccCCCCC---ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHH
Confidence            999999997664   688888764               333443321 1111222222111   122222  2345566


Q ss_pred             HHHHHHHHHHHHHHHhCCCce
Q 009523          402 QQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~  422 (532)
                      ++..++++++.+.|.+. ++.
T Consensus       328 ~~~~~~~~~l~~~L~~~-g~~  347 (483)
T 1rv3_A          328 RQVVANCRALSAALVEL-GYK  347 (483)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCE
T ss_pred             HHHHHHHHHHHHHHHhc-CCE
Confidence            77788999999999886 553

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.86  E-value=3.3e-20  Score=195.90  Aligned_cols=283  Identities=12%  Similarity=0.019  Sum_probs=182.0

Q ss_pred             CCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhcc-CCCEEEEcCCCCcchHHHHHHh----------c
Q 009523          196 GRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETV----------L  261 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~-~Gd~VIv~~~~y~~t~~~~~~~----------l  261 (532)
                      .+|.++...+++++|++++|.   ++++++++|++|+..+++.+.. +||+||+.+|.|++........          .
T Consensus        81 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            567888899999999999986   3577778889999999987643 4999999999998743322111          1


Q ss_pred             ccCCcEEEEeCCC---------------------CHHHHH-HhhcC----CCeeEEEEeCCCCCCCcccC----HHHHHH
Q 009523          262 PKMGITATVIDPA---------------------DMEGLE-AALNN----NNVSLFFTESPTNPFLRCVD----VKLVSD  311 (532)
Q Consensus       262 ~~~Gv~v~~vd~~---------------------dle~Le-~al~~----~~tklV~lesP~NptG~v~d----l~~I~~  311 (532)
                      ......+..++..                     |+++|+ +++++    .++++|+++..+||+|.+.+    +++|.+
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence            1111234454432                     367888 88863    25788887655577898776    999999


Q ss_pred             HHHhCCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHH
Q 009523          312 LCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  385 (532)
Q Consensus       312 la~~~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~  385 (532)
                      +|++||+++|+||+|....      .........|++  |++|.+++ |-...|+++++++++ .+ ..........++.
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~  315 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNTFGGNAL  315 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC-------CCCCCHH
T ss_pred             HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccCCCCCCCHH
Confidence            9999999999999976421      112223346766  68899986 313568888888776 55 2111122334677


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH
Q 009523          386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID  465 (532)
Q Consensus       386 ~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~  465 (532)
                      .+..+...++.+....++..++.+++.+.|++.  +..+                  ++.|+++++++.++..... +.+
T Consensus       316 ~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~------------------~~~g~~~~i~~~~~~~~~~-~~~  374 (419)
T 2eo5_A          316 ACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDV------------------RGIGLAWGLEYNEKKVRDR-IIG  374 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEE------------------EEETTEEEEECSCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhe------------------EeeeEEEEEEEecCccHHH-HHH
Confidence            666666666655444455567777777777653  1111                  1247789998842212344 666


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA  531 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~~  531 (532)
                      .|...++.+..+                           .++.|||+++..    +.+.+++.|.+++++
T Consensus       375 ~l~~~Gv~v~~~---------------------------~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          375 ESFKRGLLLLPA---------------------------GRSAIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             HHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            665456554432                           146899988754    344555555555543

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.86  E-value=2.5e-20  Score=194.09  Aligned_cols=213  Identities=12%  Similarity=0.047  Sum_probs=145.4

Q ss_pred             hhHHHHHHHHHhhhCC--------C--cEEEeCCHHHHHHHHH--HHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          201 PTTVVVEEKMSALEGA--------E--STVIMASGMSASTVML--LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--------~--~~i~~sSG~~Ai~~al--~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      +...+++++++++++.        +  +.+++++|++|+..++  .+++++||+|+++.|+|.+...    .++..|.++
T Consensus        70 ~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~  145 (397)
T 3fsl_A           70 EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA----IFAGAGFEV  145 (397)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH----HHHHTTCCE
T ss_pred             CchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH----HHHHcCCce
Confidence            3456788888887632        3  4566667779999984  5668999999999999988543    345568888


Q ss_pred             EEeCC----C---CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCcc----
Q 009523          269 TVIDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       269 ~~vd~----~---dle~Le~al~~--~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~~----  332 (532)
                      ..++.    .   |+++|++++++  .+++++++++|+||||.+.+.   ++|+++|+++|+++|+|++|......    
T Consensus       146 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  225 (397)
T 3fsl_A          146 STYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEED  225 (397)
T ss_dssp             EEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGG
T ss_pred             EEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccc
Confidence            88875    3   89999999973  268999999999999999765   58889999999999999998754321    


Q ss_pred             -cc-----cccCCcEEEECCccccCCCCCcEEEEEEe---ChHHHHHHHHH-h---hhcCCCccHHHHHHHHHh------
Q 009523          333 -KA-----LSLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNL-H---HVLGGALNPNAAYLIIRG------  393 (532)
Q Consensus       333 -~~-----l~~gaDivv~S~sK~lgg~gd~~gG~lv~---~~~li~~l~~~-~---~~~G~~~~~~~a~l~l~~------  393 (532)
                       .+     ...+.++++.|+||.+|.+| ...|+++.   ++++++.+... .   .......+...+..+...      
T Consensus       226 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  304 (397)
T 3fsl_A          226 AYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEAL  304 (397)
T ss_dssp             GHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHH
T ss_pred             cHHHHHHHhcCCCEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHH
Confidence             11     12345689999999998655 34677753   45666544321 1   111122232322222211      


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          394 ----MKTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       394 ----l~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                          .+.+....++..++++.+.+.|+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  333 (397)
T 3fsl_A          305 KASWLKEVEEMRTRILAMRQELVKVLSTE  333 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                2234445556667788888888875

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.86  E-value=3.2e-20  Score=198.63  Aligned_cols=210  Identities=14%  Similarity=0.154  Sum_probs=151.0

Q ss_pred             hHHHHHHHHHhhhCCCc-EEEeCCHH-HHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          202 TTVVVEEKMSALEGAES-TVIMASGM-SASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga~~-~i~~sSG~-~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      ..+++++++++++|.+. ++++++|+ .++.+++.++..  +|++||++++.|.+...    .++..|++++.++.    
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~----~~~~~G~~~~~v~~~~~~  209 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK----AVSFVGMNMRLVETVLDG  209 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----HHHHTTCEEEEECCEEET
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH----HHHHcCCCceEEEEeccC
Confidence            45668999999999864 67777778 566556665533  77889999999987543    34457888887764    


Q ss_pred             ----CCHHHHHHhh-cC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-cccc---cc--CC
Q 009523          274 ----ADMEGLEAAL-NN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL--GA  339 (532)
Q Consensus       274 ----~dle~Le~al-~~---~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-~~~l---~~--ga  339 (532)
                          .|+++|++++ ++   .++.+|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... ..+.   ..  ++
T Consensus       210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~  289 (456)
T 2z67_A          210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  289 (456)
T ss_dssp             TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence                3799999999 41   3688899999999999999999999999999999999999875432 1111   12  79


Q ss_pred             cEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~--~~~~~a~l~l~~l--~tl~~r~~~~~~~a~~la~~  414 (532)
                      |+++.|+||+++++.  .+|+++. ++++++.+...  ..|..  ......+.++..+  +.+..+.++..++++++.+.
T Consensus       290 D~~~~s~hK~~~~p~--g~G~l~~~~~~~~~~l~~~--~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~  365 (456)
T 2z67_A          290 DAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL  365 (456)
T ss_dssp             SEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCCC--CeEEEEEcCHHHHhhcCcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876543  3688888 56777776432  22322  1123334333332  34555667777888899988


Q ss_pred             HHhCC
Q 009523          415 LEAHP  419 (532)
Q Consensus       415 L~~~p  419 (532)
                      |++.+
T Consensus       366 L~~~~  370 (456)
T 2z67_A          366 LNDLS  370 (456)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            88764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.86  E-value=3.1e-20  Score=199.68  Aligned_cols=211  Identities=17%  Similarity=0.154  Sum_probs=154.0

Q ss_pred             hHHHHHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHh----ccCCC-----EEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          202 TTVVVEEKMSALEGAESTV-IMASGMSASTVMLLAL----VPAGG-----HIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       202 ~~~~Le~~lA~l~ga~~~i-~~sSG~~Ai~~al~al----l~~Gd-----~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ..+++++.+++++|.+..+ ++++|++|+..+++++    .++||     +|+++.+.|+.+...    +...|++++.+
T Consensus       108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~----~~~~G~~vv~v  183 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT----ASMAGYQVREI  183 (474)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH----HHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHH----HHHCCCEEEEe
Confidence            4677899999999987655 4477789988766554    36888     999999999876533    45568898888


Q ss_pred             CCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCCCC--cccccccCCcEEE
Q 009523          272 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVL  343 (532)
Q Consensus       272 d~~-----dle~Le~al~~~~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~~~--~~~~l~~gaDivv  343 (532)
                      +.+     |+++|++++++ ++++|++++| ||+|.+ .|+++|+++|+++|+++|+|++++.+.  ...+...|+|+++
T Consensus       184 ~~~~~~~~d~~~L~~~i~~-~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~  261 (474)
T 1wyu_B          184 PSGPEGEVDLEALKRELGP-HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVH  261 (474)
T ss_dssp             CBCTTSSBCHHHHHHHCST-TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEE
T ss_pred             cCCCCCCcCHHHHHHhhCC-CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEE
Confidence            764     89999999987 6999999998 589998 699999999999999999999985432  2344556899999


Q ss_pred             ECCccccCCC---CCcEEEEEEeChHHHHHHHH-Hh------------------hhcCCCccHHHHHHHHHh-----HHH
Q 009523          344 HSATKFIGGH---NDVLAGSISGSGKLVTQIRN-LH------------------HVLGGALNPNAAYLIIRG-----MKT  396 (532)
Q Consensus       344 ~S~sK~lgg~---gd~~gG~lv~~~~li~~l~~-~~------------------~~~G~~~~~~~a~l~l~~-----l~t  396 (532)
                      .|+||+++++   |+..+|++++++++++.+.. ..                  .....+.++..+..+...     .+.
T Consensus       262 ~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~  341 (474)
T 1wyu_B          262 LNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG  341 (474)
T ss_dssp             CCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH
Confidence            9999999854   22347899999887765541 00                  000112233333222222     234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Q 009523          397 LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       397 l~~r~~~~~~~a~~la~~L~~~  418 (532)
                      +....++..++++++.+.|++.
T Consensus       342 l~~~~~~~~~~~~~l~~~L~~~  363 (474)
T 1wyu_B          342 LKKAAALAVLNARYLKELLKEK  363 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            4555666778888999999875

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.86  E-value=3.1e-20  Score=194.73  Aligned_cols=250  Identities=17%  Similarity=0.157  Sum_probs=155.7

Q ss_pred             HHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH-hcccCCcEEEEeCCC------CH
Q 009523          205 VVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDPA------DM  276 (532)
Q Consensus       205 ~Le~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~-~l~~~Gv~v~~vd~~------dl  276 (532)
                      ..++.+++++|.+.. ++++||++|+..++.+++++||+|+++.++|++....... .....++.+..++.+      |+
T Consensus        82 ~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~  161 (425)
T 3ecd_A           82 LAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDY  161 (425)
T ss_dssp             HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCH
T ss_pred             HHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCH
Confidence            345888999998876 4589999999999999999999999999999873211111 122223455555433      89


Q ss_pred             HHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-----cccccccCCcEEEECCccccC
Q 009523          277 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       277 e~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-----~~~~l~~gaDivv~S~sK~lg  351 (532)
                      ++|++++++.++++|++++|+||  ...++++|.++|++||+++|+|+++..+.     ...+.. .+|+++.|+||+++
T Consensus       162 ~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~  238 (425)
T 3ecd_A          162 DQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLR  238 (425)
T ss_dssp             HHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGC
T ss_pred             HHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccC
Confidence            99999997336999999999985  67899999999999999999999954321     122233 37999999999997


Q ss_pred             CCCCcEEEEEEeC-hHHHHHHHHHhhh--cCCCccHHHHHH--HHH-hH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Q 009523          352 GHNDVLAGSISGS-GKLVTQIRNLHHV--LGGALNPNAAYL--IIR-GM-KTLHLRVQQQNSTALRMAKILEAHPKVKRV  424 (532)
Q Consensus       352 g~gd~~gG~lv~~-~~li~~l~~~~~~--~G~~~~~~~a~l--~l~-~l-~tl~~r~~~~~~~a~~la~~L~~~p~v~~V  424 (532)
                      |+   .+|+++++ +++.+.+......  .+....+..+.+  ++. .+ +.+....++..++++++.+.|.+. ++. +
T Consensus       239 g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~  313 (425)
T 3ecd_A          239 GP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVD-L  313 (425)
T ss_dssp             CC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E
T ss_pred             CC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCe-e
Confidence            65   37898887 4666666553322  112222222211  111 11 234455566677888888888873 332 2


Q ss_pred             eCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009523          425 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG  477 (532)
Q Consensus       425 ~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G  477 (532)
                      ..|.               +.+.++++.++........+.+.|...++.+..+
T Consensus       314 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~  351 (425)
T 3ecd_A          314 VTGG---------------TDNHLLLVDLRPKGLKGAQVEQALERAGITCNKN  351 (425)
T ss_dssp             GGGS---------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEC
T ss_pred             ccCC---------------CCceEEEEEeCCCCCCHHHHHHHHHHcCCEeccc
Confidence            2111               1356888888631112334444444446666543

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.86  E-value=6.2e-20  Score=195.30  Aligned_cols=288  Identities=15%  Similarity=0.179  Sum_probs=185.0

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHH-HHHHhcc---
Q 009523          197 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRI-FIETVLP---  262 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~-~~~~~l~---  262 (532)
                      ++..+...+++++|+++++.  +++++++||++|+.++++.+..        +||+||+.++.|++... .+. ...   
T Consensus        89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~-~~g~~~  167 (449)
T 3a8u_X           89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTS-LGGVNG  167 (449)
T ss_dssp             SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH-HCCCHH
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhh-ccCChh
Confidence            67788899999999999953  5688889999999999987764        78999999999987532 221 111   


Q ss_pred             --------cCCcEEEEeCC--------CC--------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHHHH
Q 009523          263 --------KMGITATVIDP--------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSD  311 (532)
Q Consensus       263 --------~~Gv~v~~vd~--------~d--------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I~~  311 (532)
                              ..++....++.        .|        +++|++++++   .++++|+++..+|++|.+.+    +++|.+
T Consensus       168 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  247 (449)
T 3a8u_X          168 NRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNRE  247 (449)
T ss_dssp             HHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             hccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHH
Confidence                    01333332221        15        8999999872   25888888766678999888    999999


Q ss_pred             HHHhCCCEEEEECCCCCC-Cc-----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-------hc
Q 009523          312 LCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VL  378 (532)
Q Consensus       312 la~~~gi~lIvDet~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-------~~  378 (532)
                      +|++||+++|+||++... ..     ........|++  |++|.+++ |....|++++++++++.+.....       ..
T Consensus       248 l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~  324 (449)
T 3a8u_X          248 ICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYAVEFPH  324 (449)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCC
T ss_pred             HHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCcccccccccc
Confidence            999999999999998532 11     12223346876  67899986 31346777888888888765311       11


Q ss_pred             C--CCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          379 G--GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       379 G--~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      +  ...++..+..+...++.+..  ..++..++.+++.+.|++.+.+     |..          ...++.|.+++++++
T Consensus       325 ~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~----------~~~~~~g~~~~i~~~  389 (449)
T 3a8u_X          325 GYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGA-----KNV----------IDIRNFGLAGAIQIA  389 (449)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTS-----TTE----------EEEEEETTEEEEEEC
T ss_pred             cCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC-----CCe----------EEEeeeEEEEEEEEe
Confidence            2  23466666666666665432  3455556677777777653211     110          001235789999997


Q ss_pred             CCH--H--HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHH
Q 009523          455 GDL--T--ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVL  526 (532)
Q Consensus       455 g~~--~--~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~  526 (532)
                      +..  .  ....+.+.|...++.+..|                            .+.|||+++..    +.+.+++.|.
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------g~~iRis~~~~~t~~~i~~~l~~l~  441 (449)
T 3a8u_X          390 PRDGDAIVRPFEAGMALWKAGFYVRFG----------------------------GDTLQFGPTFNSKPQDLDRLFDAVG  441 (449)
T ss_dssp             CBTTBSSHHHHHHHHHHHHHTEECEEE----------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cCcccccccHHHHHHHHHHCCcEEecC----------------------------CCEEEEECCCcCCHHHHHHHHHHHH
Confidence            531  1  1224555544335444321                            16799997643    3445555565


Q ss_pred             HHHhh
Q 009523          527 QALHA  531 (532)
Q Consensus       527 ~AL~~  531 (532)
                      +++++
T Consensus       442 ~~l~~  446 (449)
T 3a8u_X          442 EVLNK  446 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.86  E-value=2.1e-20  Score=194.71  Aligned_cols=215  Identities=14%  Similarity=0.098  Sum_probs=148.7

Q ss_pred             CchhHHHHHHHHHhhh---C-----CCcEEE--eCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          199 GNPTTVVVEEKMSALE---G-----AESTVI--MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~---g-----a~~~i~--~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ..+...+|++++++++   +     .+++++  +++|++|+.+++..+  +.+||+|+++.|+|++...    .++..|.
T Consensus        67 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~----~~~~~g~  142 (396)
T 2q7w_A           67 GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS----VFNSAGL  142 (396)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH----HHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH----HHHHcCC
Confidence            3455678999999987   2     245665  778889999998765  4699999999999998653    3445688


Q ss_pred             EEEEeCC---C----CHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          267 TATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       267 ~v~~vd~---~----dle~Le~al~~~--~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                      ++..++.   +    |+++|++++++.  +++++++++|+||||.+.+   +++|+++|+++|+++|+|++|.....   
T Consensus       143 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  222 (396)
T 2q7w_A          143 EVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE  222 (396)
T ss_dssp             EEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH
T ss_pred             ceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc
Confidence            8877765   3    799999998752  4788999999999999987   45789999999999999999875422   


Q ss_pred             -----cccc-cc-CCcEEEECCccccCCCCCcEEEEEEe---ChH----HHHHHHHHhhhcCCCccHHHHHHHHHhHHH-
Q 009523          332 -----QKAL-SL-GADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMKT-  396 (532)
Q Consensus       332 -----~~~l-~~-gaDivv~S~sK~lgg~gd~~gG~lv~---~~~----li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-  396 (532)
                           ...+ .. ..++++.|+||.+|.+| ...|++++   +++    +++.+...........++..++.+...++. 
T Consensus       223 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  301 (396)
T 2q7w_A          223 EDAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSND  301 (396)
T ss_dssp             HHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH
T ss_pred             chhHHHHHHHhcCCcEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcCh
Confidence                 1111 12 34688999999998665 34677775   553    444444332222223356555555444432 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhC
Q 009523          397 ---------LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       397 ---------l~~r~~~~~~~a~~la~~L~~~  418 (532)
                               +....++..++++.+.+.|++.
T Consensus       302 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (396)
T 2q7w_A          302 ALRAIWEQELTDMRQRIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     2223344556677778888775

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.86  E-value=5.3e-20  Score=196.27  Aligned_cols=205  Identities=20%  Similarity=0.169  Sum_probs=147.0

Q ss_pred             HHHHhhhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHH-hcccCCcEEEEeC------CCCHHHH
Q 009523          208 EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID------PADMEGL  279 (532)
Q Consensus       208 ~~lA~l~ga~~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~-~l~~~Gv~v~~vd------~~dle~L  279 (532)
                      +++++++|.+.+.+ ++||++|+..++.+++++||+|+++++.|++....... .+...+..+..++      ..|+++|
T Consensus        98 ~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l  177 (447)
T 3h7f_A           98 DRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAV  177 (447)
T ss_dssp             HHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHH
T ss_pred             HHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHH
Confidence            89999999987766 89999999999999999999999999998773211000 0111233444443      2489999


Q ss_pred             HHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-----cccccccCCcEEEECCccccCCCC
Q 009523          280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKFIGGHN  354 (532)
Q Consensus       280 e~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-----~~~~l~~gaDivv~S~sK~lgg~g  354 (532)
                      ++++++.++++|++++|+||++.  ++++|.++|+++|+++|+|+++..++     ...+. .++|+++.|+||+++|+ 
T Consensus       178 ~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~-  253 (447)
T 3h7f_A          178 RATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGG-  253 (447)
T ss_dssp             HHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCC-
T ss_pred             HHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCC-
Confidence            99986436899999999998876  99999999999999999999965321     12233 35799999999999865 


Q ss_pred             CcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHH--HHHh-H-HHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          355 DVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYL--IIRG-M-KTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       355 d~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l--~l~~-l-~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                        .+|++++++++++.++.....  .|+...+..+.+  ++.. . +.+..+.++..++++++.+.|++.
T Consensus       254 --~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          254 --RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             --SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             --CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              479999999888888764332  233222222221  1111 1 144556677788899999988764

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.86  E-value=2.4e-20  Score=195.19  Aligned_cols=283  Identities=12%  Similarity=0.024  Sum_probs=175.3

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccC--CcEEEEeCCC
Q 009523          201 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPA  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~---~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~--Gv~v~~vd~~  274 (532)
                      +..+++++++++++|.+   ++++ +++|++|+.+++.+++++| .+++....|....  . ......  |.+++.++.+
T Consensus        78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~  153 (398)
T 2fyf_A           78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKF--A-SAVSKNPFVGEPIIITSD  153 (398)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHH--H-HHHHHCTTSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHH--H-HHHHHhCCCCceEEEecC
Confidence            35788999999999974   3555 6788899999999999887 2333444443211  1 112222  5666666543


Q ss_pred             CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCC
Q 009523          275 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHN  354 (532)
Q Consensus       275 dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~g  354 (532)
                      +-......+++ ++++|++++|+||||.+.|+++|.++   +|+++|+|++++.+....... ++|+++.|+||++++++
T Consensus       154 ~g~~~~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~g  228 (398)
T 2fyf_A          154 PGSAPEPQTDP-SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDG  228 (398)
T ss_dssp             TTCCCCCCCCT-TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCS
T ss_pred             CCCCCCccccC-CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCC
Confidence            10000112455 69999999999999999999988877   899999999987543211122 47999999999999885


Q ss_pred             CcEEEEEEeChHHHHHHHHHh---------------------hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHH
Q 009523          355 DVLAGSISGSGKLVTQIRNLH---------------------HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNST  407 (532)
Q Consensus       355 d~~gG~lv~~~~li~~l~~~~---------------------~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~  407 (532)
                      +  .|+++.++++++.++...                     .....+.+....+.+..+++.      +..+.++..++
T Consensus       229 g--~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~  306 (398)
T 2fyf_A          229 G--LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADS  306 (398)
T ss_dssp             S--EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             c--eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            2  688889998888774321                     001123344433333334432      34455666788


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      ++++.+.|++.|++. +..+.    |..        ..+.+++|.++.+ .....+.+.|...++.+..|.       . 
T Consensus       307 ~~~l~~~L~~~~g~~-~~~~~----~~~--------~~~~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~-------~-  364 (398)
T 2fyf_A          307 SQRLYSWAQERPYTT-PFVTD----PGL--------RSQVVGTIDFVDD-VDAGTVAKILRANGIVDTEPY-------R-  364 (398)
T ss_dssp             HHHHHHHHHHSTTEE-ESCCS----GGG--------BCSSEEEEEECTT-SCHHHHHHHHHHTTCBCCSCC-------T-
T ss_pred             HHHHHHHHHHcCCce-eccCC----hhh--------cCCcEEEEECCCC-CCHHHHHHHHHHCCcEEecCc-------c-
Confidence            888999998877653 32211    110        1234899999632 223455555554466655431       0 


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHhh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALHA  531 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed----~~dli~dL~~AL~~  531 (532)
                                     ...++.||||++...    .+.+++.|++++++
T Consensus       365 ---------------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          365 ---------------KLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             ---------------TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             ---------------cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                           012578999999643    44455555555543

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.86  E-value=3.8e-20  Score=194.24  Aligned_cols=214  Identities=11%  Similarity=0.075  Sum_probs=147.0

Q ss_pred             chhHHHHHHHHHhhh-C-------CCcEEE--eCCHHHHHHHHH--HHhccCCCEEEEcCCCCcchHHHHHHhcccCCcE
Q 009523          200 NPTTVVVEEKMSALE-G-------AESTVI--MASGMSASTVML--LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  267 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~-g-------a~~~i~--~sSG~~Ai~~al--~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~  267 (532)
                      .+...+|++++++++ +       .+++++  +++|++|+.+++  ..++.+||+|+++.|+|++...    .++..|.+
T Consensus        72 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~----~~~~~g~~  147 (412)
T 1yaa_A           72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA----IFENQGLK  147 (412)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH----HHHTTTCC
T ss_pred             CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH----HHHHcCce
Confidence            345678899999887 3       246677  777889999873  4556799999999999998653    34456777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc---
Q 009523          268 ATVIDP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---  332 (532)
Q Consensus       268 v~~vd~-------~dle~Le~al~~~--~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~---  332 (532)
                      +..++.       .|+++|++++++.  +++++++++|+||||.+++   +++|+++|+++|+++|+|++|......   
T Consensus       148 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~  227 (412)
T 1yaa_A          148 TATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLD  227 (412)
T ss_dssp             EEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHH
T ss_pred             EEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccc
Confidence            777664       2789999988652  2455666999999999987   557888999999999999998643211   


Q ss_pred             -c--cc----ccC----CcEEEECCccccCCCCCcEEEEEE--e-----ChH----HHHHHHHHhhhcCCCccHHHHHHH
Q 009523          333 -K--AL----SLG----ADLVLHSATKFIGGHNDVLAGSIS--G-----SGK----LVTQIRNLHHVLGGALNPNAAYLI  390 (532)
Q Consensus       333 -~--~l----~~g----aDivv~S~sK~lgg~gd~~gG~lv--~-----~~~----li~~l~~~~~~~G~~~~~~~a~l~  390 (532)
                       .  +.    ..+    .++++.|+||.+|++| ...|+++  +     +++    +++.++..........++...+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~  306 (412)
T 1yaa_A          228 KDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIV  306 (412)
T ss_dssp             HHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             chhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence             1  11    123    4688999999999766 3467777  6     555    677766643333333355544444


Q ss_pred             HHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          391 IRGMK----------TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       391 l~~l~----------tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ...++          .+....++..++++.+.+.|+++
T Consensus       307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (412)
T 1yaa_A          307 AKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44443          23333445556777777888764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.85  E-value=5.2e-21  Score=204.42  Aligned_cols=166  Identities=13%  Similarity=0.142  Sum_probs=125.1

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      ++....++.+...++++.+|+ +|.++.+++++|+ +|+.+++++++++||+|++++++|.++...+.    ..|.++.+
T Consensus        48 ~~d~~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~----~~G~~~~~  122 (446)
T 2x3l_A           48 GLDDLHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALD----ISQQEGHF  122 (446)
T ss_dssp             TSCCTTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH----HHTCCEEE
T ss_pred             CCccccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH----HcCCeEEE
Confidence            344455677888999999999 9987777776665 99999999999999999999999998765442    24666666


Q ss_pred             eCC--C---------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-----cccc
Q 009523          271 IDP--A---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKA  334 (532)
Q Consensus       271 vd~--~---------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-----~~~~  334 (532)
                      ++.  +         |+++|   +.+ ++++|++++| |++|.+.|+++|.++|+++|+++|+|++++..+     ....
T Consensus       123 v~~~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~  197 (446)
T 2x3l_A          123 IETHQSPLTNHYNKVNLSRL---NND-GHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDST  197 (446)
T ss_dssp             CEEEECTTTSSEEEEEC-----------CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCG
T ss_pred             EeCeeccccCcCCCCCHHHH---cCC-CceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCCh
Confidence            543  2         34555   344 6899999985 569999999999999999999999999987632     2344


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHH
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT  369 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~  369 (532)
                      ...|+|+++.|+||+++++.  .+|++++++++++
T Consensus       198 ~~~g~Di~~~S~~K~l~~~~--g~g~l~~~~~~i~  230 (446)
T 2x3l_A          198 LNYQADYVVQSFHKTLPALT--MGSVLYIHKNAPY  230 (446)
T ss_dssp             GGGTCSEEEECHHHHSSSCT--TCEEEEEETTCTT
T ss_pred             HHcCCCEEEECCcccccccc--ccEEEEEcCCcCC
Confidence            45689999999999776553  2588888766543

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.85  E-value=6.6e-20  Score=193.39  Aligned_cols=213  Identities=12%  Similarity=0.096  Sum_probs=144.0

Q ss_pred             hhHHHHHHHHHhhhCC--------C--cEEEeCCHHHHHHHH--HHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          201 PTTVVVEEKMSALEGA--------E--STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga--------~--~~i~~sSG~~Ai~~a--l~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      ....+|+++++++++.        +  +.+++++|++|+..+  +.+++++||+|++++|+|.+...    .++..|.++
T Consensus        92 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~  167 (420)
T 4f4e_A           92 DGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA----LFDMAGFEV  167 (420)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH----HHHHTTCCE
T ss_pred             CCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH----HHHHcCCeE
Confidence            3456677777776532        2  456666777999998  45678999999999999988653    344567777


Q ss_pred             EEeCC----C---CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----
Q 009523          269 TVIDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  332 (532)
Q Consensus       269 ~~vd~----~---dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----  332 (532)
                      ..++.    +   |+++|++++++  .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    
T Consensus       168 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~  247 (420)
T 4f4e_A          168 VAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEAD  247 (420)
T ss_dssp             EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGG
T ss_pred             EEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchh
Confidence            77765    2   79999999972  26899999999999999987   558888899999999999998654321    


Q ss_pred             -cc-----cccCCcEEEECCccccCCCCCcEEEEEEe---ChHHHHHH----HHHhhhcCCCccHHHHHHHHHhH-----
Q 009523          333 -KA-----LSLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQI----RNLHHVLGGALNPNAAYLIIRGM-----  394 (532)
Q Consensus       333 -~~-----l~~gaDivv~S~sK~lgg~gd~~gG~lv~---~~~li~~l----~~~~~~~G~~~~~~~a~l~l~~l-----  394 (532)
                       ..     ...+.++++.|+||.++.+|. ..|+++.   ++++++.+    +..........+...++.+...+     
T Consensus       248 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  326 (420)
T 4f4e_A          248 AAAVRLFAAANLNVFVSSSFSKSFSLYGE-RVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPEL  326 (420)
T ss_dssp             GHHHHHHHHTTCCEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHhcCCCEEEEEeCCccCcCcCC-CcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHH
Confidence             01     123567999999999996664 4566642   45655543    22222222223333333332222     


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          395 -----KTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       395 -----~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                           +.+....++..++++.+.+.|+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          327 RASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 223444455567778888888875

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.85  E-value=3.5e-20  Score=199.99  Aligned_cols=263  Identities=15%  Similarity=0.107  Sum_probs=154.8

Q ss_pred             CCCCCCC--CchhHHHHH----HHHHhhhCCCc----E-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHH---
Q 009523          192 SFEYGRY--GNPTTVVVE----EKMSALEGAES----T-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI---  257 (532)
Q Consensus       192 ~~~Y~R~--~~p~~~~Le----~~lA~l~ga~~----~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~---  257 (532)
                      +|..+||  +++..++||    +++++++|++.    + ++++||++|+..++.++++|||+|++.++.|++.....   
T Consensus        85 G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~  164 (490)
T 2a7v_A           85 GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMS  164 (490)
T ss_dssp             C------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC---------------
T ss_pred             CCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhh
Confidence            3444453  456666777    89999999875    4 45569999999999999999999999999997643110   


Q ss_pred             H-HhcccCCc--EEEEeC------CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC
Q 009523          258 E-TVLPKMGI--TATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       258 ~-~~l~~~Gv--~v~~vd------~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~  328 (532)
                      . ..+...|.  .+..++      ..|+++|+++++++++++|+++.++||  .+.|+++|.++|+++|+++++|+++..
T Consensus       165 ~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~  242 (490)
T 2a7v_A          165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHIS  242 (490)
T ss_dssp             ----------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGH
T ss_pred             cchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEcccccc
Confidence            0 01112232  222332      238999999986446899999888876  467999999999999999999999642


Q ss_pred             -----CCcccccccCCcEEEECCccccCCCCCcEEEEEEeChH---------------HHHHHHHHhhh-cCCCccHH-H
Q 009523          329 -----PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHHV-LGGALNPN-A  386 (532)
Q Consensus       329 -----~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~---------------li~~l~~~~~~-~G~~~~~~-~  386 (532)
                           +....++. ++|+++.|+||+++|+.   ||+++++++               +.++++..... ..+.+... .
T Consensus       243 glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp~---GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~i  318 (490)
T 2a7v_A          243 GLVAAKVIPSPFK-HADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI  318 (490)
T ss_dssp             HHHHTTSSCCGGG-TCSEEEEESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHH
T ss_pred             ccccCCcCCCCCC-CCCEEEECCcccCcccc---chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHH
Confidence                 22234444 79999999999998763   788888653               45566554321 11122222 1


Q ss_pred             HHH--HHH-hH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009523          387 AYL--IIR-GM-KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK  462 (532)
Q Consensus       387 a~l--~l~-~l-~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~  462 (532)
                      +.+  ++. .+ +.+..+.++..+|++++++.|.+. ++. +..++.               -..++++.+.........
T Consensus       319 aAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~-v~~~~t---------------~t~lv~vdl~~~g~~~~~  381 (490)
T 2a7v_A          319 AAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYS-LVSGGT---------------DNHLVLVDLRPKGLDGAR  381 (490)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGGSC---------------SSSEEEEECTTTTCCHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcE-EecCCC---------------CCeEEEEEeCCCCCCHHH
Confidence            221  111 11 234566778889999999999885 442 221211               134788887632112233


Q ss_pred             HHHHcCCCceeecCC
Q 009523          463 FIDALKIPYIAPSFG  477 (532)
Q Consensus       463 ~l~~L~~~~i~vs~G  477 (532)
                      +.+.|+..+|.++.+
T Consensus       382 ~~~~L~~~GI~v~~~  396 (490)
T 2a7v_A          382 AERVLELVSITANKN  396 (490)
T ss_dssp             HHHHHHHTTEECEEE
T ss_pred             HHHHHHhCCeEEecC
Confidence            444444457777654

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.85  E-value=4.4e-20  Score=193.74  Aligned_cols=214  Identities=17%  Similarity=0.176  Sum_probs=147.4

Q ss_pred             chhHHHHHHHHHhhh-CCC-------cE--EEeCCHHHHHHHH---HHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          200 NPTTVVVEEKMSALE-GAE-------ST--VIMASGMSASTVM---LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~-ga~-------~~--i~~sSG~~Ai~~a---l~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      .+...+|++++++++ |.+       +.  +.+.+|++|+..+   +.+++++||+|+++.|+|.+...    .++..|.
T Consensus        78 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~  153 (409)
T 4eu1_A           78 VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES----IFAKAGM  153 (409)
T ss_dssp             TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH----HHHHTTC
T ss_pred             CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH----HHHHcCC
Confidence            445678999999976 432       23  3467777777764   44567899999999999988654    3455688


Q ss_pred             EEEEeCC-------CCHHHHHHhhc--CCCeeEEEEeCCCCCCCcccCHH---HHHHHHHhCCCEEEEECCCCCCCccc-
Q 009523          267 TATVIDP-------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQK-  333 (532)
Q Consensus       267 ~v~~vd~-------~dle~Le~al~--~~~tklV~lesP~NptG~v~dl~---~I~~la~~~gi~lIvDet~a~~~~~~-  333 (532)
                      ++..++.       .|+++|+++++  +.+++++++++|+||||.+.+.+   +|+++|+++|+++|+|++|....... 
T Consensus       154 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~  233 (409)
T 4eu1_A          154 ELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQL  233 (409)
T ss_dssp             EEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCH
T ss_pred             eEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCc
Confidence            8888764       17899999986  22577888899999999999855   58999999999999999987543211 


Q ss_pred             -----c---c-c-cCCcEEEECCccccCCCCCcEEEEE---EeChH----HHHHHHHHhhhcCCCccHHHHHHHHHhHH-
Q 009523          334 -----A---L-S-LGADLVLHSATKFIGGHNDVLAGSI---SGSGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK-  395 (532)
Q Consensus       334 -----~---l-~-~gaDivv~S~sK~lgg~gd~~gG~l---v~~~~----li~~l~~~~~~~G~~~~~~~a~l~l~~l~-  395 (532)
                           +   + . ....+++.|+||.+|.+|. ..|++   +++++    +++.++..........++..++++...++ 
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  312 (409)
T 4eu1_A          234 DYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGH-RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKD  312 (409)
T ss_dssp             HHHTHHHHHHHTTSSCCEEEEECTTTSSCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHhhCCcEEEEecCcccccCccC-CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCC
Confidence                 1   1 1 1334889999999987664 45664   56677    55656554433333444555554444433 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          396 ---------TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       396 ---------tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                               .+....++..++++.+.+.|++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          313 PQLTALWKKELKQMSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     23344455667777888888775

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.85  E-value=1.4e-20  Score=199.94  Aligned_cols=269  Identities=12%  Similarity=0.065  Sum_probs=175.1

Q ss_pred             HHHHHHHHHhhhC------C--CcEEEeCCHHHHHHHHHHHh--------ccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          203 TVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       203 ~~~Le~~lA~l~g------a--~~~i~~sSG~~Ai~~al~al--------l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ..+||++||++++      .  +++++++++++++.+++.++        +++||+|+++.|.|.+....+    +..|.
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~----~~~g~  177 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT----KYFDK  177 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH----HHSCB
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH----HHcCC
Confidence            6789999999875      2  34555555669999999999        999999999999998765443    33455


Q ss_pred             EEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEEC
Q 009523          267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHS  345 (532)
Q Consensus       267 ~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S  345 (532)
                      ++.... .|+++|++++++ ++++|++++|+||||.+++ +    +++  ++..+.|+++..+ .....+..+.++++.|
T Consensus       178 ~~~~~~-~d~~~l~~~~~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S  248 (427)
T 2hox_A          178 KGYVWA-GNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFT  248 (427)
T ss_dssp             TTEEEE-EEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEE
T ss_pred             eeeeec-CCHHHHHHhhcC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccCCCceEEEEe
Confidence            443332 367888888876 6999999999999999999 4    233  5678999986432 1111222567999999


Q ss_pred             CccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH---------------HHHHHHHHHHHH
Q 009523          346 ATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL---------------HLRVQQQNSTAL  409 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl---------------~~r~~~~~~~a~  409 (532)
                      +||.+|.+| .+.|++++ ++++++.++..........+...+.++...++..               ....++..++.+
T Consensus       249 ~SK~~g~~G-~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
T 2hox_A          249 MSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV  327 (427)
T ss_dssp             HHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred             ChhcCCCCC-ceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHH
Confidence            999998665 45788888 5899999888766554455666555554444432               122344556777


Q ss_pred             HHHHHHHhCCCceEEeC--CCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          410 RMAKILEAHPKVKRVHY--PGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~--Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      .+.+.|++.+++....+  |.     +...+.-.....|.++|+.++.+. +....+++   ..++.+..|..+.     
T Consensus       328 ~l~~~L~~~~g~~~~~~~~~~-----~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~---~~gI~v~pg~~f~-----  394 (427)
T 2hox_A          328 NITALLDQSDRFSYQELPQSE-----YCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQ---NGRINTQNGVGFE-----  394 (427)
T ss_dssp             HHHHHHTTSSSEECCCCCSCE-----EETTTTEEECCCCSEEEEEECSGGGCSHHHHHH---HTTEECEEGGGGT-----
T ss_pred             HHHHHHHhCcCcccccccccc-----ccccccccCCCCceEEEEECCCcHHHHHHHHHH---HCCEEEcCCCccC-----
Confidence            88888887765521001  11     000000001224678899997421 12233332   3467776664321     


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                                       ..+++||||++.
T Consensus       395 -----------------~~~~~~Ris~~~  406 (427)
T 2hox_A          395 -----------------ASSRYVRLSLIK  406 (427)
T ss_dssp             -----------------SCTTEEEEECSS
T ss_pred             -----------------CCCCEEEEEecC
Confidence                             125799999996

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.85  E-value=2.9e-20  Score=193.59  Aligned_cols=213  Identities=15%  Similarity=0.101  Sum_probs=145.1

Q ss_pred             hhHHHHHHHHHhhh-CC----CcEEE--eCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          201 PTTVVVEEKMSALE-GA----ESTVI--MASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       201 p~~~~Le~~lA~l~-ga----~~~i~--~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ....+|++++++++ +.    +++++  +++|++|+.+++..+..  +||+|+++.|+|++....    +...|.++..+
T Consensus        69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~  144 (394)
T 2ay1_A           69 SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSI----MNFMGLPVQTY  144 (394)
T ss_dssp             SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHH----HHHHTCCEEEE
T ss_pred             CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCceEEE
Confidence            44678999999986 43    45666  78888999999887754  999999999999986543    34457777776


Q ss_pred             CC---C----CHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc--------
Q 009523          272 DP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--------  331 (532)
Q Consensus       272 d~---~----dle~Le~al~~~--~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~--------  331 (532)
                      +.   +    |+++|++++++.  +++++++++|+||||.+++   +++|.++|+++|+++|+|++|.....        
T Consensus       145 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~  224 (394)
T 2ay1_A          145 RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAG  224 (394)
T ss_dssp             ECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHH
T ss_pred             ecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHH
Confidence            65   2    799999998753  3678888999999999987   55789999999999999999875432        


Q ss_pred             cccc-ccC-CcEEEECCccccCCCCCcEEEEEEe---ChHHHHHHH----HHhhhcCCCccHHHHHHHHHhHH-------
Q 009523          332 QKAL-SLG-ADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMK-------  395 (532)
Q Consensus       332 ~~~l-~~g-aDivv~S~sK~lgg~gd~~gG~lv~---~~~li~~l~----~~~~~~G~~~~~~~a~l~l~~l~-------  395 (532)
                      ...+ ..+ .++++.|+||.+|.+| ...|++++   ++++++.+.    ..........++..++.+...++       
T Consensus       225 ~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~  303 (394)
T 2ay1_A          225 TRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRAD  303 (394)
T ss_dssp             HHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHH
Confidence            1111 123 3478999999998655 35688877   666554432    22222122224444444444333       


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          396 ---TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       396 ---tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                         .+....++..++++.+.+.|+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          304 WMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               22333344456666777777654

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.85  E-value=3.4e-19  Score=190.60  Aligned_cols=289  Identities=14%  Similarity=0.106  Sum_probs=187.0

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHHh--
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  260 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~~~~~~--  260 (532)
                      +.+.++.++...+|+++|+++.+.  +.+++++||++|+..+++.+.+        ++++||+.++.|++........  
T Consensus        86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~  165 (459)
T 4a6r_A           86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG  165 (459)
T ss_dssp             CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence            455678899999999999999854  6788889999999999998875        5789999999999853222111  


Q ss_pred             -------cccCCcEEEEeCCC---------C--------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHH
Q 009523          261 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  309 (532)
Q Consensus       261 -------l~~~Gv~v~~vd~~---------d--------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I  309 (532)
                             .......+..++..         |        +++|++++++   .++++|++|.++|++|.+.+    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l  245 (459)
T 4a6r_A          166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI  245 (459)
T ss_dssp             CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence                   01111123334311         2        7888888862   36889999888888888887    9999


Q ss_pred             HHHHHhCCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH---HhhhcCC
Q 009523          310 SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVLGG  380 (532)
Q Consensus       310 ~~la~~~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~---~~~~~G~  380 (532)
                      .++|++||+++|+||++....      .........|+++  ++|.+++++ ...|++++++++++.+..   .......
T Consensus       246 ~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~-~~lg~v~~~~~i~~~~~~~~~~~~~~t~  322 (459)
T 4a6r_A          246 ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGY-LPIGAVFVGKRVAEGLIAGGDFNHGFTY  322 (459)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCC-CCccceeeCHHHHHHhhcCCCcccCCCC
Confidence            999999999999999976321      1122234467775  679998753 346888899999988872   1211122


Q ss_pred             CccHHHHHHHHHhHHHHH--HHHHHHH-HHHHHHHHHH----HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEE
Q 009523          381 ALNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAKIL----EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV  453 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~--~r~~~~~-~~a~~la~~L----~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l  453 (532)
                      ..++..+..++..++.+.  ..+++.. ++.+++.+.|    .++|.+..+                  ++.|.+++|++
T Consensus       323 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------------~~~g~~~~~~~  384 (459)
T 4a6r_A          323 SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV------------------RGVGMVQAFTL  384 (459)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE------------------EEETTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EEEEEEEEEEE
Confidence            346777776666666442  2234444 4555555555    333433322                  23578889988


Q ss_pred             cCCH----------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHH
Q 009523          454 DGDL----------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFE  519 (532)
Q Consensus       454 ~g~~----------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~  519 (532)
                      ..+.          .....+.+.+...++.+..+                            .+.|||+..+    |+.+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------g~~iRi~~~~~~t~e~i~  436 (459)
T 4a6r_A          385 VKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC----------------------------GDHIVSAPPLVMTRAEVD  436 (459)
T ss_dssp             CSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE----------------------------TTEEEECCCTTCCHHHHH
T ss_pred             ecCccccccccchHHHHHHHHHHHHHCCeEEecC----------------------------CCEEEEECCCCCCHHHHH
Confidence            6421          12445555554445443321                            1689999654    3455


Q ss_pred             HHHHHHHHHHh
Q 009523          520 DLKADVLQALH  530 (532)
Q Consensus       520 dli~dL~~AL~  530 (532)
                      ++++.|+++|+
T Consensus       437 ~~l~~l~~~l~  447 (459)
T 4a6r_A          437 EMLAVAERCLE  447 (459)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            56666666654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.85  E-value=1.9e-19  Score=190.30  Aligned_cols=290  Identities=12%  Similarity=0.107  Sum_probs=185.7

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc----------
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----------  261 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l----------  261 (532)
                      ..|.++...+++++|+++++.  +++++++||++|+..+++.+.  ..+|+||+.++.|++.........          
T Consensus        80 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  159 (433)
T 1zod_A           80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP  159 (433)
T ss_dssp             TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence            456778889999999999974  567888899999999998653  346899999999987432211110          


Q ss_pred             ccCCcEEEEeCC------C---------CHHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCE
Q 009523          262 PKMGITATVIDP------A---------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  319 (532)
Q Consensus       262 ~~~Gv~v~~vd~------~---------dle~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~  319 (532)
                      ...|+....++.      .         |+++|++++++   .++++|+++.++||+|.+.+    +++|.++|++||++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~  239 (433)
T 1zod_A          160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGML  239 (433)
T ss_dssp             CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred             CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence            012444333321      1         38899998862   36888888766688998776    99999999999999


Q ss_pred             EEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHH
Q 009523          320 VCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLII  391 (532)
Q Consensus       320 lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~--~G~~~~~~~a~l~l  391 (532)
                      +|+||++.....      .+......|++  |++|.+++ | ...|++++++++++.+......  .....++..+..+.
T Consensus       240 li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~  315 (433)
T 1zod_A          240 LILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-G-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGL  315 (433)
T ss_dssp             EEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-T-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHH
T ss_pred             EEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-C-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHH
Confidence            999999874211      12223345665  68899997 4 4678999999998888653211  11234666666555


Q ss_pred             HhHHHHH--HHHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HH
Q 009523          392 RGMKTLH--LRVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LT  458 (532)
Q Consensus       392 ~~l~tl~--~r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------~~  458 (532)
                      ..++.+.  ...++..++.+++.+.|++    +|.+..+                  ++.|.++++++++.       ..
T Consensus       316 aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~  377 (433)
T 1zod_A          316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV------------------RGRGLLLGVEIVKDRRTKEPADG  377 (433)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCChH
Confidence            5555432  2334455566666666654    2332211                  23477889988631       12


Q ss_pred             HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          459 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       459 ~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                      ....+.+.+...++.+..|+.                      .+ .++.|||+++..    +.+++++.|+++++
T Consensus       378 ~~~~~~~~l~~~Gv~v~~~~~----------------------~~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~  430 (433)
T 1zod_A          378 LGAKITRECMNLGLSMNIVQL----------------------PG-MGGVFRIAPPLTVSEDEIDLGLSLLGQAIE  430 (433)
T ss_dssp             HHHHHHHHHHHTTEECCEECC----------------------TT-SCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCeEeccCC----------------------CC-CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence            345566666555666554421                      01 147899987653    34455555555554

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.85  E-value=3.8e-19  Score=190.27  Aligned_cols=291  Identities=12%  Similarity=0.081  Sum_probs=188.1

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHHh--
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  260 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~~~~~~--  260 (532)
                      +.+.++.++...+|+++|+++.+.  +.+++++||++|+..+++.+..        ++++||+.++.|++........  
T Consensus        87 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~  166 (460)
T 3gju_A           87 HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTG  166 (460)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCC
T ss_pred             ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccC
Confidence            445567888999999999998753  5788899999999999988764        4689999999998854222111  


Q ss_pred             -------cccCCcEEEEeC--C----CC------------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHH
Q 009523          261 -------LPKMGITATVID--P----AD------------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKL  308 (532)
Q Consensus       261 -------l~~~Gv~v~~vd--~----~d------------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~  308 (532)
                             .......+..++  .    +|            +++|++++++   .++++|++|+++|++|.+.+    +++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~  246 (460)
T 3gju_A          167 LDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEK  246 (460)
T ss_dssp             CGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred             CcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHH
Confidence                   111112233333  1    22            6889988862   26899999998899998776    999


Q ss_pred             HHHHHHhCCCEEEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-------h
Q 009523          309 VSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------H  375 (532)
Q Consensus       309 I~~la~~~gi~lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~  375 (532)
                      |.++|++||+++|+||++.....      ........|+++  ++|.++++. ...|++++++++++.+...       .
T Consensus       247 l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~-~~lg~v~~~~~i~~~~~~~~~~~~~~~  323 (460)
T 3gju_A          247 IQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAY-APLSGVIVADRVWQVLVQGSDKLGSLG  323 (460)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHHHHHHHHCSCS
T ss_pred             HHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCC-CCeEEEEECHHHHHHHhcccccccccc
Confidence            99999999999999999764211      122233456665  779998742 3468888999998888532       1


Q ss_pred             hhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHH----HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEE
Q 009523          376 HVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKIL----EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVV  449 (532)
Q Consensus       376 ~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L----~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~v  449 (532)
                      .......++..++.++..++.+.  ..+++..++.+++.+.|    .++|.+..+                  ++.|.++
T Consensus       324 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------------~~~g~~~  385 (460)
T 3gju_A          324 HGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV------------------RGDGMLA  385 (460)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------eeeeEEE
Confidence            11223346777777666666432  22344445555555544    344443322                  2357789


Q ss_pred             EEEEcCCH----------HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----
Q 009523          450 SFEVDGDL----------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----  515 (532)
Q Consensus       450 sf~l~g~~----------~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----  515 (532)
                      ++++..+.          .....+.+.+...++.+..++                          .++.|||+..+    
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------~~~~iRi~~~~~~t~  439 (460)
T 3gju_A          386 AVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--------------------------QGDILGFAPPLCLTR  439 (460)
T ss_dssp             EEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--------------------------SSCEEEECCCTTCCH
T ss_pred             EEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--------------------------CCCEEEEECCCCCCH
Confidence            99886421          124455555544455443321                          14789999664    


Q ss_pred             CCHHHHHHHHHHHHh
Q 009523          516 EDFEDLKADVLQALH  530 (532)
Q Consensus       516 ed~~dli~dL~~AL~  530 (532)
                      |+.+++++.|+++|+
T Consensus       440 e~i~~~l~~l~~~l~  454 (460)
T 3gju_A          440 EQADIVVSKTADAVK  454 (460)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445566666666664

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.85  E-value=1.5e-19  Score=196.39  Aligned_cols=222  Identities=13%  Similarity=0.124  Sum_probs=158.8

Q ss_pred             CCchhHHHHHHH----HHhhhCCC----cEEEeCCHHHHHHHHHHHhcc--------------CCCEEEEcCCCCcchHH
Q 009523          198 YGNPTTVVVEEK----MSALEGAE----STVIMASGMSASTVMLLALVP--------------AGGHIVTTTDCYRKTRI  255 (532)
Q Consensus       198 ~~~p~~~~Le~~----lA~l~ga~----~~i~~sSG~~Ai~~al~all~--------------~Gd~VIv~~~~y~~t~~  255 (532)
                      ...|...++|+.    +++++|.+    ..+++++|++|+..++.++..              +++.|+++...|.+...
T Consensus       128 ~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~  207 (511)
T 3vp6_A          128 EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK  207 (511)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHH
Confidence            356777776665    46667764    568888999999888877654              57799999999988654


Q ss_pred             HHHHhcccCCc---EEEEeCCC-----CHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEE
Q 009523          256 FIETVLPKMGI---TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI  322 (532)
Q Consensus       256 ~~~~~l~~~Gv---~v~~vd~~-----dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIv  322 (532)
                      ..    ...|+   +++.++.+     |+++|+++|++.     ++++|++++|+|++|.+.|+++|+++|++||+++++
T Consensus       208 ~~----~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhv  283 (511)
T 3vp6_A          208 AG----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV  283 (511)
T ss_dssp             HH----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred             HH----HHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEE
Confidence            43    33444   67777654     899999999752     189999999999999999999999999999999999


Q ss_pred             ECCCCCCCcccc----c---ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh--h----------------
Q 009523          323 DGTFATPLNQKA----L---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--V----------------  377 (532)
Q Consensus       323 Det~a~~~~~~~----l---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~----------------  377 (532)
                      |++++.+....+    .   ..++|+++.++||+++++.+ .+++++.+++++........  .                
T Consensus       284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  362 (511)
T 3vp6_A          284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ-CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK  362 (511)
T ss_dssp             EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC-CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred             EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC-eEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence            999876543211    1   13579999999999987643 24444555555554321100  0                


Q ss_pred             ---cCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Q 009523          378 ---LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRV  424 (532)
Q Consensus       378 ---~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V  424 (532)
                         .+........|.+++  +.+.+..++++..++++++.+.|++.|+++.+
T Consensus       363 ~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~  414 (511)
T 3vp6_A          363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMV  414 (511)
T ss_dssp             SSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEES
T ss_pred             CCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence               011123444555444  44567788889999999999999998887543

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.84  E-value=2.8e-19  Score=189.04  Aligned_cols=295  Identities=13%  Similarity=0.092  Sum_probs=180.5

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcchHHHHHHhcc---
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLP---  262 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all--------~~Gd~VIv~~~~y~~t~~~~~~~l~---  262 (532)
                      .++.++...+|+++|+++.+.  +++++++||++|+..+++.+.        .+||+||+.++.|++........-.   
T Consensus        67 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  146 (430)
T 3i4j_A           67 SQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGA  146 (430)
T ss_dssp             TTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC----------------
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccc
Confidence            367888999999999999964  678888899999999998876        3478999999999875422111100   


Q ss_pred             ------cCCc--EEEEeCCC--------CHHHHHHhhcC---CCeeEEEEeCCCC-CCCcccC----HHHHHHHHHhCCC
Q 009523          263 ------KMGI--TATVIDPA--------DMEGLEAALNN---NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGA  318 (532)
Q Consensus       263 ------~~Gv--~v~~vd~~--------dle~Le~al~~---~~tklV~lesP~N-ptG~v~d----l~~I~~la~~~gi  318 (532)
                            ....  .+..++..        |+++|++++++   .++++|+++.++| ++|.+.+    +++|.++|++||+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~  226 (430)
T 3i4j_A          147 RRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGI  226 (430)
T ss_dssp             ---------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTC
T ss_pred             cccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCC
Confidence                  0000  22334433        34888888862   3688899988888 9998887    9999999999999


Q ss_pred             EEEEECCCCCCC------ccccc-ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH----hhhcCCCccHHHH
Q 009523          319 IVCIDGTFATPL------NQKAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGALNPNAA  387 (532)
Q Consensus       319 ~lIvDet~a~~~------~~~~l-~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~----~~~~G~~~~~~~a  387 (532)
                      ++|+||+|....      ..... ....|+++  ++|.+++ |-...|++++++++++.+...    ........++..+
T Consensus       227 ~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~  303 (430)
T 3i4j_A          227 IFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSV  303 (430)
T ss_dssp             EEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHH
T ss_pred             EEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHH
Confidence            999999976431      11222 33356664  7899986 314568889999999888763    2222234567776


Q ss_pred             HHHHHhHHHHH--HHHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----
Q 009523          388 YLIIRGMKTLH--LRVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----  456 (532)
Q Consensus       388 ~l~l~~l~tl~--~r~~~~~~~a~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----  456 (532)
                      ..++..++.+.  ..+++..++.+++.+.|+    ++|.+..+                  ++.|.++++++.+.     
T Consensus       304 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~  365 (430)
T 3i4j_A          304 AAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV------------------RGTGLLLGVVLGDLATGQA  365 (430)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEC-------
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEeccccccCC
Confidence            66666666432  223444455555555554    44544322                  22477889988531     


Q ss_pred             ---HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHH
Q 009523          457 ---LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQAL  529 (532)
Q Consensus       457 ---~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL  529 (532)
                         ...+..+.+.+...++.+..+...      .              .|..++.+||++++    |+.+++++.|+++|
T Consensus       366 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~--------------~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l  425 (430)
T 3i4j_A          366 FETPGIASRIGAAALKRGLITYPGSGA------E--------------PNGRGDHLLLGPPLSITAAEVDGLLALLAGAL  425 (430)
T ss_dssp             -----CHHHHHHHHHHTTEECC-------------------------------CEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCCCEEEecccc------c--------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence               111245556555556655443210      0              12235789999774    44556666666666


Q ss_pred             hh
Q 009523          530 HA  531 (532)
Q Consensus       530 ~~  531 (532)
                      ++
T Consensus       426 ~~  427 (430)
T 3i4j_A          426 ED  427 (430)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.84  E-value=6.9e-20  Score=196.29  Aligned_cols=290  Identities=12%  Similarity=0.096  Sum_probs=190.7

Q ss_pred             CCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc-------CCC-EEEEcCCCCcchHHHHHHh---
Q 009523          194 EYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AGG-HIVTTTDCYRKTRIFIETV---  260 (532)
Q Consensus       194 ~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~-------~Gd-~VIv~~~~y~~t~~~~~~~---  260 (532)
                      .++++.++...+|+++|+++.+.  +.+++++||++|+..+++.+.+       +|+ +||+.++.|++........   
T Consensus       111 ~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~  190 (457)
T 3tfu_A          111 MFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDP  190 (457)
T ss_dssp             CSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCC
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCC
Confidence            34778889999999999999963  6788999999999999988765       554 8999999998743211111   


Q ss_pred             -------cccCCcEEEEeCC-------CCHHHHHHhhc---CCCeeEEEEeC-CCCCCCcccC----HHHHHHHHHhCCC
Q 009523          261 -------LPKMGITATVIDP-------ADMEGLEAALN---NNNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGA  318 (532)
Q Consensus       261 -------l~~~Gv~v~~vd~-------~dle~Le~al~---~~~tklV~les-P~NptG~v~d----l~~I~~la~~~gi  318 (532)
                             .......+.+++.       .|+++|+++++   + ++++|++|+ ++|++|.+.+    +++|.++|++||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~-~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gi  269 (457)
T 3tfu_A          191 HGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG-ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV  269 (457)
T ss_dssp             C----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG-GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTC
T ss_pred             cccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC-CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCC
Confidence                   1111112233332       37899999987   4 699999999 9999999886    9999999999999


Q ss_pred             EEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-----hhhcCCCccHHHH
Q 009523          319 IVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGGALNPNAA  387 (532)
Q Consensus       319 ~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-----~~~~G~~~~~~~a  387 (532)
                      ++|+||++....      .........|++  |++|.++|+. ...|++++++++++.+...     ........++..+
T Consensus       270 llI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~-~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~  346 (457)
T 3tfu_A          270 LLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGY-LSLAATLCTADVAHTISAGAAGALMHGPTFMANPLAC  346 (457)
T ss_dssp             EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTS-SCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHH
T ss_pred             EEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCC-cceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHH
Confidence            999999975321      122233456777  6889998742 3478889999998887521     1111223567777


Q ss_pred             HHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH
Q 009523          388 YLIIRGMKTLH--LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID  465 (532)
Q Consensus       388 ~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~  465 (532)
                      ..++..++.+.  ...++..++.+++.+.|++..     .+|.+.          ..++.|.+++|+++.. .....+.+
T Consensus       347 aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~v~----------~vr~~G~~~~i~l~~~-~~~~~~~~  410 (457)
T 3tfu_A          347 AVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-----ALPAVT----------DVRVCGAIGVIECDRP-VDLAVATP  410 (457)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-----GSTTEE----------EEEECSSCEEEEESSC-CCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----cCCCee----------eeecCCeEEEEEECCc-ccHHHHHH
Confidence            77776776543  224455566667777776531     112110          1133578899999753 12345555


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      .|...++.+..                            ..+.|||+..+    |+.+++++.|++++++
T Consensus       411 ~l~~~Gv~v~~----------------------------~~~~lRi~p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          411 AALDRGVWLRP----------------------------FRNLVYAMPPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             HHHHTTEECCC----------------------------BTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCeEEEe----------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            55444543321                            13589998654    4456666666666654

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.84  E-value=1.5e-19  Score=203.57  Aligned_cols=218  Identities=12%  Similarity=0.053  Sum_probs=158.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC----
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----  273 (532)
                      +++...++|+.+|+++|++.++++++|+ +|+.+++.+++++||+|+++.++|.+....   .+...|+++++++.    
T Consensus       171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~  247 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNP  247 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECT
T ss_pred             ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccc
Confidence            5567899999999999999888888887 899999999999999999999999886542   15556888777653    


Q ss_pred             ------CCHHHH-----HHhhcCCC-----e----eEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-
Q 009523          274 ------ADMEGL-----EAALNNNN-----V----SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-  332 (532)
Q Consensus       274 ------~dle~L-----e~al~~~~-----t----klV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-  332 (532)
                            .|+++|     ++++++++     +    ++|++++| |++|.+.|+++|+++|+++|+++++|++++..+.+ 
T Consensus       248 ~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~  326 (730)
T 1c4k_A          248 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI  326 (730)
T ss_dssp             TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred             cCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence                  267777     99887631     4    89999998 58999999999999999999999999998753211 


Q ss_pred             ------ccccc---CCc----EEEECCccccCCCCCcEEEEEEeChHHH---------HHHHHHhhhc-CCCccHHHHHH
Q 009523          333 ------KALSL---GAD----LVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVL-GGALNPNAAYL  389 (532)
Q Consensus       333 ------~~l~~---gaD----ivv~S~sK~lgg~gd~~gG~lv~~~~li---------~~l~~~~~~~-G~~~~~~~a~l  389 (532)
                            .++..   |+|    +++.|+||+++|+.  .+|+++.+++.+         ..+......+ .+.++......
T Consensus       327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaa  404 (730)
T 1c4k_A          327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA  404 (730)
T ss_dssp             GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             cccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHH
Confidence                  23333   788    99999999999875  367775433221         2333322222 23333332222


Q ss_pred             HHHhHH-----HHHHHHHHHHHHHHHHHHHHHh-CCCce
Q 009523          390 IIRGMK-----TLHLRVQQQNSTALRMAKILEA-HPKVK  422 (532)
Q Consensus       390 ~l~~l~-----tl~~r~~~~~~~a~~la~~L~~-~p~v~  422 (532)
                      +..+++     ....++++..++++++.+.|++ .+++.
T Consensus       405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~  443 (730)
T 1c4k_A          405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR  443 (730)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence            222222     2345667788889999999988 57764

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.84  E-value=8.5e-20  Score=193.36  Aligned_cols=259  Identities=14%  Similarity=0.153  Sum_probs=175.4

Q ss_pred             CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhc----------cc
Q 009523          197 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PK  263 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~-ga~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l----------~~  263 (532)
                      .+.++...+++++|+++. +.+.+++++||++|+.++++..  +.++++||+.++.|++.........          ..
T Consensus        92 ~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~  171 (434)
T 2epj_A           92 GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTS  171 (434)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESS
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCC
Confidence            457888999999999999 6778899999999999999862  3456788888899987432110000          01


Q ss_pred             CCc------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc
Q 009523          264 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN  331 (532)
Q Consensus       264 ~Gv------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~  331 (532)
                      .|+      .+..++..|+++|++++++  .++++|+++..+|++|.+.|    +++|.++|++||+++|+||++.....
T Consensus       172 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~  251 (434)
T 2epj_A          172 AGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL  251 (434)
T ss_dssp             TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS
T ss_pred             CCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC
Confidence            243      3555666799999999873  26889999877788999998    99999999999999999999873311


Q ss_pred             -----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcCC--CccHHHHHHHHHhHHHHH--HHH
Q 009523          332 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLH--LRV  401 (532)
Q Consensus       332 -----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G~--~~~~~~a~l~l~~l~tl~--~r~  401 (532)
                           ........|++  |++|.+++ | ..+|++++++++++.+..... ..+.  ..++..+..+...++.+.  ...
T Consensus       252 g~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~  327 (434)
T 2epj_A          252 GLEGAQGYFNIEGDII--VLGKIIGG-G-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVY  327 (434)
T ss_dssp             STTHHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHH
T ss_pred             CcchhhHHhCCCCCee--eecchhcC-C-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHH
Confidence                 11123346765  68899997 3 457899999888776654211 1222  356777666666666543  234


Q ss_pred             HHHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHH
Q 009523          402 QQQNSTALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFID  465 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------------~~~~~~~l~  465 (532)
                      ++..++.+++.+.|++.    +.+..+                  ++.|.+++++++..            ......+.+
T Consensus       328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (434)
T 2epj_A          328 SVSREAAKALEEAASEVLDRTGLPYTI------------------NRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHE  389 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEE------------------EEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEE------------------EEeeeEEEEEEeCCCcccchhccccCHHHHHHHHH
Confidence            55556667777766653    211111                  23578999999741            234556777


Q ss_pred             HcCCCceeecCC
Q 009523          466 ALKIPYIAPSFG  477 (532)
Q Consensus       466 ~L~~~~i~vs~G  477 (532)
                      .|...++.+..|
T Consensus       390 ~l~~~Gv~v~~~  401 (434)
T 2epj_A          390 EMLRRGVFIAPS  401 (434)
T ss_dssp             HHHHTTEECCSS
T ss_pred             HHHHCCeEEecc
Confidence            666557666554

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.84  E-value=9.2e-20  Score=196.28  Aligned_cols=245  Identities=15%  Similarity=0.164  Sum_probs=166.1

Q ss_pred             chhHHHHHH----HHHhhhCCCc-----------EEEeCCHHHHHHHHHHHhccC---------CC--------E--EEE
Q 009523          200 NPTTVVVEE----KMSALEGAES-----------TVIMASGMSASTVMLLALVPA---------GG--------H--IVT  245 (532)
Q Consensus       200 ~p~~~~Le~----~lA~l~ga~~-----------~i~~sSG~~Ai~~al~all~~---------Gd--------~--VIv  245 (532)
                      .|....+|+    .+++++|.+.           .+++++|++|+..++.++..+         ||        .  |++
T Consensus       108 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~  187 (486)
T 1js3_A          108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA  187 (486)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEE
Confidence            455555554    4567778652           688999999999888765321         43        3  788


Q ss_pred             cCCCCcchHHHHHHhcccCCcEEEEeCCC-----CHHHHHHhhcCCCe------eEEEEeCCCCCCCcccCHHHHHHHHH
Q 009523          246 TTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNV------SLFFTESPTNPFLRCVDVKLVSDLCH  314 (532)
Q Consensus       246 ~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~~t------klV~lesP~NptG~v~dl~~I~~la~  314 (532)
                      +.+.|.+...    .+...|++++.++.+     |+++|++++++ ++      .+|++++|+||+|.+.|+++|+++|+
T Consensus       188 s~~~h~s~~~----~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~-~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~  262 (486)
T 1js3_A          188 SDQAHSSVER----AGLIGGVKLKAIPSDGKFAMRASALQEALER-DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (486)
T ss_dssp             ETTCCHHHHH----HHHHHTCEEEEECCCTTSCCCHHHHHHHHHH-HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             CCCCcHHHHH----HHHhCCCceEEeecCCCCCCCHHHHHHHHHH-HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            9999987543    344568888888753     89999999976 34      38999999999999999999999999


Q ss_pred             hCCCEEEEECCCCCCCccc----cc---ccCCcEEEECCccccCCCCCcEEEEEEeCh-HH-HHHHH---HHhhh-----
Q 009523          315 KKGAIVCIDGTFATPLNQK----AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KL-VTQIR---NLHHV-----  377 (532)
Q Consensus       315 ~~gi~lIvDet~a~~~~~~----~l---~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~l-i~~l~---~~~~~-----  377 (532)
                      ++|+++++|++++.+....    ..   -.++|.++.|+||+++++.  .+|+++.++ .+ .+.+.   .+...     
T Consensus       263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~--~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~  340 (486)
T 1js3_A          263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (486)
T ss_dssp             HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred             HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc--ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence            9999999999987643211    11   1268999999999998653  257776654 33 23221   00000     


Q ss_pred             ------------cCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcC
Q 009523          378 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT  443 (532)
Q Consensus       378 ------------~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~  443 (532)
                                  .+........|.+++  +.+.+..++++..++++++.+.|++.|++..+..|                
T Consensus       341 ~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~----------------  404 (486)
T 1js3_A          341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV----------------  404 (486)
T ss_dssp             CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC----------------
T ss_pred             cCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----------------
Confidence                        111223445555444  34566777788889999999999998876533222                


Q ss_pred             CcccEEEEEEcCCHHHHHHHHHHcC
Q 009523          444 GFGGVVSFEVDGDLTATIKFIDALK  468 (532)
Q Consensus       444 g~G~~vsf~l~g~~~~~~~~l~~L~  468 (532)
                       .++++.|.+++.......+.+.|.
T Consensus       405 -~~~~v~f~~~~~~~~~~~l~~~L~  428 (486)
T 1js3_A          405 -TLGLVCFRLKGSDGLNEALLERIN  428 (486)
T ss_dssp             -CSSEEEEEESSCHHHHHHHHHHHH
T ss_pred             -ceeEEEEEecChHHHHHHHHHHHH
Confidence             245888888753222355666554

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.84  E-value=1.1e-19  Score=192.29  Aligned_cols=285  Identities=18%  Similarity=0.175  Sum_probs=187.0

Q ss_pred             CCCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHhc----------cc
Q 009523          197 RYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVL----------PK  263 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~l----------~~  263 (532)
                      .|+++...+|+++|+++++ .+++++++||++|+..+++.+..  ++++||+.++.|++.........          ..
T Consensus        91 ~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~  170 (434)
T 3l44_A           91 GTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDS  170 (434)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSS
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCc
Confidence            4678889999999999985 56788889999999999987654  78999999999987431110000          00


Q ss_pred             CCc------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCC-
Q 009523          264 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-  330 (532)
Q Consensus       264 ~Gv------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~-  330 (532)
                      .++      .+..++.+|+++|++++++  .++++|++|+++|++|.+.+    +++|.++|++||++||+||++.... 
T Consensus       171 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~  250 (434)
T 3l44_A          171 AGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF  250 (434)
T ss_dssp             TTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTS
T ss_pred             CCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceec
Confidence            111      4555666799999999872  25889999888888888887    9999999999999999999986431 


Q ss_pred             ----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---hhcCCCccHHHHHHHHHhHHHHH--HHH
Q 009523          331 ----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLH--LRV  401 (532)
Q Consensus       331 ----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---~~~G~~~~~~~a~l~l~~l~tl~--~r~  401 (532)
                          .........|++  |++|.+++ | ...|++++++++++.+....   .......++..+..++..++.+.  ..+
T Consensus       251 g~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~  326 (434)
T 3l44_A          251 MYGGAQDLLGVTPDLT--ALGKVIGG-G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLY  326 (434)
T ss_dssp             SSSCHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred             cccHHHHHcCCCCCee--ehhhhhcC-C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence                112223345655  57899984 3 46788899999887765421   11123356776666666666432  234


Q ss_pred             HHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------------CHHHHHHHHH
Q 009523          402 QQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------------DLTATIKFID  465 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g------------~~~~~~~~l~  465 (532)
                      ++..++.+++.+.|++    ++.+..+                  ++.|.++++++..            +......+.+
T Consensus       327 ~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (434)
T 3l44_A          327 EKLDELGATLEKGILEQAAKHNIDITL------------------NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFK  388 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEE------------------EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEE------------------EeeccEEEEEEecCcccchhhccccCHHHHHHHHH
Confidence            4555666666666654    2322211                  2357899998842            1223455666


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH  530 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~  530 (532)
                      .|...++.+..|+                           .+.+|+++..  |+.+.+++.|+++++
T Consensus       389 ~l~~~Gv~v~~~~---------------------------~~~~rl~~~~t~e~i~~~l~~l~~~l~  428 (434)
T 3l44_A          389 LMLQEGVNLAPSK---------------------------YEAWFLTTEHTKEDIEYTIEAVGRAFA  428 (434)
T ss_dssp             HHHHTTEECCSST---------------------------TCCEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCeEEeecC---------------------------CCcEEEecccCHHHHHHHHHHHHHHHH
Confidence            6655565554432                           2356776543  445666667766665

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.84  E-value=1.5e-19  Score=198.01  Aligned_cols=150  Identities=16%  Similarity=0.282  Sum_probs=113.5

Q ss_pred             cEEEeCCHHHHHHHHHHH-----hccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-------CCHHHHHHhhcC
Q 009523          218 STVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN  285 (532)
Q Consensus       218 ~~i~~sSG~~Ai~~al~a-----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-------~dle~Le~al~~  285 (532)
                      ++++++++++++..++.+     ++++||+|++++|+|++.....  .+...|+++..++.       .|+++|++++++
T Consensus       167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~  244 (546)
T 2zy4_A          167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKDP  244 (546)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST
T ss_pred             eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC
Confidence            344444555999999887     5789999999999998865432  24455777777753       478899988866


Q ss_pred             CCeeEEEEeCCCCCCCcccC---HHHHHHHH--HhCCCEEEEECCCCCCCc--ccccc--cCCcEEEECCccccCCCCCc
Q 009523          286 NNVSLFFTESPTNPFLRCVD---VKLVSDLC--HKKGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHNDV  356 (532)
Q Consensus       286 ~~tklV~lesP~NptG~v~d---l~~I~~la--~~~gi~lIvDet~a~~~~--~~~l~--~gaDivv~S~sK~lgg~gd~  356 (532)
                       ++++|++++|+||||.+++   +++|+++|  +++|+++|+|++|.....  .....  .+.++++.|+||.+|.+| .
T Consensus       245 -~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-l  322 (546)
T 2zy4_A          245 -AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-W  322 (546)
T ss_dssp             -TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-G
T ss_pred             -CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-c
Confidence             7999999999999999998   45678888  789999999999875432  11111  246799999999998666 4


Q ss_pred             EEEEEEeChH-HHHHH
Q 009523          357 LAGSISGSGK-LVTQI  371 (532)
Q Consensus       357 ~gG~lv~~~~-li~~l  371 (532)
                      +.|+++++++ +++.+
T Consensus       323 RiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          323 RLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             CEEEEEEESSCHHHHH
T ss_pred             ceEEEEECCHHHHHHH
Confidence            5788888764 77665

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.84  E-value=2.2e-19  Score=189.84  Aligned_cols=258  Identities=14%  Similarity=0.125  Sum_probs=170.5

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHH----------HhcccC
Q 009523          198 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~----------~~l~~~  264 (532)
                      |+++...+|+++|+++.+ .+++++++||++|+..+++...  ..+++||+.++.|++......          ......
T Consensus        90 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  169 (429)
T 4e77_A           90 APTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP  169 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence            578999999999999985 5678899999999999988543  356889999999988542110          000011


Q ss_pred             C------cEEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC---
Q 009523          265 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  329 (532)
Q Consensus       265 G------v~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~---  329 (532)
                      +      ..+..++..|+++|++++++  .++++|+++..++++|.+.+    +++|.++|++||+++|+||++...   
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g  249 (429)
T 4e77_A          170 GVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVA  249 (429)
T ss_dssp             TSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTB
T ss_pred             CCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccC
Confidence            1      23455667799999999873  25788888666666778887    999999999999999999998732   


Q ss_pred             --CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcC--CCccHHHHHHHHHhHHHH--HHHHH
Q 009523          330 --LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL--HLRVQ  402 (532)
Q Consensus       330 --~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G--~~~~~~~a~l~l~~l~tl--~~r~~  402 (532)
                        ..........|++  |++|.+++ | ..+|++++++++++.+..... ..+  ...++..++.+...++.+  ...++
T Consensus       250 ~~~~~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  325 (429)
T 4e77_A          250 LAGAQDYYHVIPDLT--CLGKIIGG-G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYE  325 (429)
T ss_dssp             TTCHHHHTTCCCSEE--EEEGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cchHHHhcCCCCCee--eecccccC-C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence              1122223345765  68899985 3 467899999988877654211 112  246777777777666654  23344


Q ss_pred             HHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------------HHHHHHHHH
Q 009523          403 QQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------------LTATIKFID  465 (532)
Q Consensus       403 ~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-------------~~~~~~~l~  465 (532)
                      +..++.+++.+.|++    ++.+..                  .++.|.+++++++..             ......+.+
T Consensus       326 ~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (429)
T 4e77_A          326 TLTELTDSLATGLRHAAKEENIPLV------------------VNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFH  387 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCE------------------EEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceE------------------EEEeeeEEEEEEccCcccccccccccccHHHHHHHHH
Confidence            555566666666654    222111                  134678999998753             123456666


Q ss_pred             HcCCCceeecCC
Q 009523          466 ALKIPYIAPSFG  477 (532)
Q Consensus       466 ~L~~~~i~vs~G  477 (532)
                      .|...++.+..+
T Consensus       388 ~l~~~Gi~v~~~  399 (429)
T 4e77_A          388 LMLEEGVYLAPS  399 (429)
T ss_dssp             HHHHTTEECCSS
T ss_pred             HHHHCCeEEeec
Confidence            665556665544

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.83  E-value=4.5e-19  Score=188.90  Aligned_cols=296  Identities=14%  Similarity=0.169  Sum_probs=190.4

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHHHHHHHHHHHhc-----c---CCCEEEEcCCCCcchHHHHHHhc--
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLALV-----P---AGGHIVTTTDCYRKTRIFIETVL--  261 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~~Ai~~al~all-----~---~Gd~VIv~~~~y~~t~~~~~~~l--  261 (532)
                      +...++.++...+|+++|+++.+.+ ++++++||++|+..+++.+.     .   ++|+||+.++.|++........-  
T Consensus        83 ~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  162 (452)
T 3n5m_A           83 YFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQ  162 (452)
T ss_dssp             CCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCC
T ss_pred             CcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCc
Confidence            3334577889999999999998752 37888899999999999876     4   78999999999987432221110  


Q ss_pred             -------ccCCcEEEEeCC--------CC---------HHHHHHhhc---CCCeeEEEEeCC-CCCCCcccC----HHHH
Q 009523          262 -------PKMGITATVIDP--------AD---------MEGLEAALN---NNNVSLFFTESP-TNPFLRCVD----VKLV  309 (532)
Q Consensus       262 -------~~~Gv~v~~vd~--------~d---------le~Le~al~---~~~tklV~lesP-~NptG~v~d----l~~I  309 (532)
                             ......+..++.        +|         +++|+++++   ..++++|++|++ +| +|.+.+    +++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l  241 (452)
T 3n5m_A          163 AQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAV  241 (452)
T ss_dssp             GGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHH
T ss_pred             hhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHH
Confidence                   111112333432        23         899999987   236899999999 89 998887    9999


Q ss_pred             HHHHHhCCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH---Hh---hh
Q 009523          310 SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LH---HV  377 (532)
Q Consensus       310 ~~la~~~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~---~~---~~  377 (532)
                      .++|++||+++|+||++....      .........|+++  ++|.+++ |-...|++++++++++.+..   ..   ..
T Consensus       242 ~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~  318 (452)
T 3n5m_A          242 HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHI  318 (452)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCC
T ss_pred             HHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccC-CCcceEEEEECHHHHHHHhhccCCCCcccc
Confidence            999999999999999976321      1222233456664  7899986 31356888889888887643   11   11


Q ss_pred             cCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEE
Q 009523          378 LGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF  451 (532)
Q Consensus       378 ~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf  451 (532)
                      .....++..+..++..++.+.  ..+++..++.+++.+.|++    +|.+..+                  ++.|.++++
T Consensus       319 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i  380 (452)
T 3n5m_A          319 NTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDI------------------RGKGLLVGI  380 (452)
T ss_dssp             CSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE------------------EESSSCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EEEEEEEEE
Confidence            123356777776666666442  2244455555666665543    3433222                  235678888


Q ss_pred             EEcCC--------HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHH
Q 009523          452 EVDGD--------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFE  519 (532)
Q Consensus       452 ~l~g~--------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~  519 (532)
                      ++..+        ......+.+.+...|+.+..++.+.    +                 -.++.|||+++..    +.+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~----~-----------------~~~~~iRi~~~~~~t~e~i~  439 (452)
T 3n5m_A          381 ELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT----A-----------------GYNNILTLAPPLVISSEEIA  439 (452)
T ss_dssp             EEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS----T-----------------TCCCEEEECCCTTCCHHHHH
T ss_pred             EEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc----C-----------------CCCCEEEEECCCCCCHHHHH
Confidence            87421        1233455665555566665543211    0                 1257999987653    455


Q ss_pred             HHHHHHHHHHhh
Q 009523          520 DLKADVLQALHA  531 (532)
Q Consensus       520 dli~dL~~AL~~  531 (532)
                      ++++.|+++|++
T Consensus       440 ~~l~~l~~~l~~  451 (452)
T 3n5m_A          440 FVIGTLKTAMER  451 (452)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            556666666654

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.83  E-value=2.9e-19  Score=190.40  Aligned_cols=286  Identities=14%  Similarity=0.119  Sum_probs=178.3

Q ss_pred             CCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc----CC----CEEEEcCCCCcchHHHHHHh-----
Q 009523          196 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP----AG----GHIVTTTDCYRKTRIFIETV-----  260 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~----~G----d~VIv~~~~y~~t~~~~~~~-----  260 (532)
                      .++.++...+|+++|+++.+  .+.+++++||++|+..+++.+..    +|    |+||+.++.|++........     
T Consensus        82 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  161 (448)
T 3dod_A           82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIEL  161 (448)
T ss_dssp             SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence            55778889999999999985  36788999999999999988765    45    99999999998743211100     


Q ss_pred             ----cccCCcEEEEeCCC----------------CHHHHHHhhc--CCCeeEEEEeCCC-CCCCcccC----HHHHHHHH
Q 009523          261 ----LPKMGITATVIDPA----------------DMEGLEAALN--NNNVSLFFTESPT-NPFLRCVD----VKLVSDLC  313 (532)
Q Consensus       261 ----l~~~Gv~v~~vd~~----------------dle~Le~al~--~~~tklV~lesP~-NptG~v~d----l~~I~~la  313 (532)
                          .......+..++..                |+++|+++++  +.++++|++|+++ |++|.+.+    +++|.++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence                00001122333332                3788999886  2368999999998 99998876    99999999


Q ss_pred             HhCCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH-------HhhhcCC
Q 009523          314 HKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-------LHHVLGG  380 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~-------~~~~~G~  380 (532)
                      ++||++||+||++...      +.........|+++  ++|.+++ |....|++++++++++.+..       .......
T Consensus       242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t--~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~  318 (448)
T 3dod_A          242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMA--AGKGITG-GYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSY  318 (448)
T ss_dssp             HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTT
T ss_pred             HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEE--ecccccC-CcCceEEEEECHHHHHHhhhccccCCcccccCCC
Confidence            9999999999997632      11222233456664  7899986 32357889999988887754       2221223


Q ss_pred             CccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh---CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          381 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~---~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      ..++..+..++..++.+.  ..+++..++.+++.+.|++   +|.+..+                  ++.|.++++++..
T Consensus       319 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------------~~~g~~~~~~~~~  380 (448)
T 3dod_A          319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI------------------RQLGFMCGAELVR  380 (448)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEECS
T ss_pred             CcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EeeeEEEEEEEcc
Confidence            346777777676776542  2244555566666666654   3322221                  2357799999864


Q ss_pred             CHH----------HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHH
Q 009523          456 DLT----------ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDL  521 (532)
Q Consensus       456 ~~~----------~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dl  521 (532)
                      +..          ....+.+.+...|+.+..+                            .+.|||+..+    |+.++.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------------------------~~~iRi~~~~~~t~e~i~~~  432 (448)
T 3dod_A          381 SKETKEPYPADRRIGYKVSLKMRELGMLTRPL----------------------------GDVIAFLPPLASTAEELSEM  432 (448)
T ss_dssp             BTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----------------------------TTEEEECCCTTCCHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHHHHHHCCcEEecc----------------------------CCEEEEECCCCCCHHHHHHH
Confidence            311          0244555554445433221                            2689997654    445566


Q ss_pred             HHHHHHHHh
Q 009523          522 KADVLQALH  530 (532)
Q Consensus       522 i~dL~~AL~  530 (532)
                      ++.|+++++
T Consensus       433 l~~l~~~l~  441 (448)
T 3dod_A          433 VAIMKQAIH  441 (448)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666664

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.83  E-value=3e-19  Score=190.73  Aligned_cols=291  Identities=14%  Similarity=0.103  Sum_probs=185.7

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHh-------
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------  260 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~-------  260 (532)
                      +.+.++.++...+|+++|+++.+   .+++++++||++|+..+++.+..  .+++||+.++.|++........       
T Consensus        96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~  175 (451)
T 3oks_A           96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY  175 (451)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence            45567888999999999999986   25688999999999999987653  4589999999999854322111       


Q ss_pred             ---cccCCcEEEEeCCC------------------CHHHHHHhh----cCCCeeEEEEeCCCCCCCcccC----HHHHHH
Q 009523          261 ---LPKMGITATVIDPA------------------DMEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSD  311 (532)
Q Consensus       261 ---l~~~Gv~v~~vd~~------------------dle~Le~al----~~~~tklV~lesP~NptG~v~d----l~~I~~  311 (532)
                         .......+..++..                  +++.+++.+    .+.++++|++|..++..|.+.+    +++|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  255 (451)
T 3oks_A          176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD  255 (451)
T ss_dssp             TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence               11111234444432                  233333433    2335788888776666677776    999999


Q ss_pred             HHHhCCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHH
Q 009523          312 LCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  385 (532)
Q Consensus       312 la~~~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~  385 (532)
                      +|++||+++|+||+|....      .........|++  |++|.+++ | ...|++++++++++.+...........++.
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~  331 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPI  331 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHH
T ss_pred             HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-C-cceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence            9999999999999976321      122233346776  67899987 4 457888889888877654333333345777


Q ss_pred             HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----
Q 009523          386 AAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG----  455 (532)
Q Consensus       386 ~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g----  455 (532)
                      .+++++..++.+..  .+++..++.+++.+.|+    ++|.+..+                  ++.|.++++++..    
T Consensus       332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~G~~~~~~~~~~~~~  393 (451)
T 3oks_A          332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV------------------RGRGAMIAMELVKAGTT  393 (451)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEBSTTSC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EEeeEEEEEEEecCccC
Confidence            77776666665432  23444455555555554    34443322                  2357899999842    


Q ss_pred             --CHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHH
Q 009523          456 --DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQAL  529 (532)
Q Consensus       456 --~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL  529 (532)
                        .......+.+.+...++.+..++.                         ..+.+||++.+.    +.++.++.|.++|
T Consensus       394 ~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l  448 (451)
T 3oks_A          394 EPDADLTKALCAGAHAAGVIVLSCGT-------------------------YGNVVRFLPPLSIGDDLLNEGLDVLEEVL  448 (451)
T ss_dssp             CBCHHHHHHHHHHHHHTTEECEEECT-------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCcEEecCCC-------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence              234556677666555655443211                         246899987754    3455556666665


Q ss_pred             h
Q 009523          530 H  530 (532)
Q Consensus       530 ~  530 (532)
                      +
T Consensus       449 ~  449 (451)
T 3oks_A          449 R  449 (451)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.83  E-value=3.9e-19  Score=192.43  Aligned_cols=218  Identities=13%  Similarity=0.133  Sum_probs=154.2

Q ss_pred             hhHHHH----HHHHHhhhCCC----cEEEeCCHHHHHHHHHHHhcc--------CC-----C-EEEEcCCCCcchHHHHH
Q 009523          201 PTTVVV----EEKMSALEGAE----STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYRKTRIFIE  258 (532)
Q Consensus       201 p~~~~L----e~~lA~l~ga~----~~i~~sSG~~Ai~~al~all~--------~G-----d-~VIv~~~~y~~t~~~~~  258 (532)
                      |....+    .+.+++++|.+    ..+++++|++|+..++.++..        +|     + +|+++.+.|.+....+.
T Consensus       128 ~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~  207 (504)
T 2okj_A          128 PVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA  207 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH
Confidence            554444    45668888865    477888899999999887742        57     6 79999999988665443


Q ss_pred             HhcccCCc-EEEEeCCC-----CHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCC
Q 009523          259 TVLPKMGI-TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA  327 (532)
Q Consensus       259 ~~l~~~Gv-~v~~vd~~-----dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a  327 (532)
                      . +. .|. +++.++.+     |+++|++++++.     ++++|++++|+||+|.+.|+++|+++|+++|+++++|++|+
T Consensus       208 ~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~  285 (504)
T 2okj_A          208 A-LG-FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWG  285 (504)
T ss_dssp             H-TT-SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred             H-cC-CCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhh
Confidence            2 21 243 67777754     899999998652     48999999999999999999999999999999999999987


Q ss_pred             CCCcc-----cccc--cCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHH-hh-hcCC-----------------
Q 009523          328 TPLNQ-----KALS--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNL-HH-VLGG-----------------  380 (532)
Q Consensus       328 ~~~~~-----~~l~--~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~-~~-~~G~-----------------  380 (532)
                      .+...     ..+.  .++|+++.|+||+++++.  ..|+++.++ ++++..... .. ..+.                 
T Consensus       286 ~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (504)
T 2okj_A          286 GGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQC  363 (504)
T ss_dssp             GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCS
T ss_pred             hHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCC
Confidence            65432     1122  278999999999998654  257777665 455542211 11 1110                 


Q ss_pred             --CccHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          381 --ALNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       381 --~~~~~~a~l~l~~l--~tl~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                        .......|++++.+  +.+..++++..++++++.+.|++.|++.
T Consensus       364 ~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~  409 (504)
T 2okj_A          364 GRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFE  409 (504)
T ss_dssp             SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             CCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence              11345555555444  3455667778888999999999887764

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.82  E-value=1e-18  Score=187.94  Aligned_cols=288  Identities=13%  Similarity=0.133  Sum_probs=188.6

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHHh--
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  260 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~~~~~~--  260 (532)
                      +.+.++.++...+|+++|+++.+.  +.+++++||++|+..+++.+..        ++++||+.++.|++........  
T Consensus        91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~  170 (472)
T 3hmu_A           91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG  170 (472)
T ss_dssp             CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC
Confidence            445677889999999999999864  5788899999999999998764        4689999999998843211111  


Q ss_pred             -------cccCCcEEEEeCCC---------C--------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHH
Q 009523          261 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  309 (532)
Q Consensus       261 -------l~~~Gv~v~~vd~~---------d--------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I  309 (532)
                             .. ....+..++..         |        +++|++++++   .++++|++|+++|++|.+.+    +++|
T Consensus       171 ~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l  249 (472)
T 3hmu_A          171 MAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEI  249 (472)
T ss_dssp             CHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHH
T ss_pred             ChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHH
Confidence                   11 11123333311         2        7888888861   26899999999999999887    9999


Q ss_pred             HHHHHhCCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC--CC
Q 009523          310 SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GA  381 (532)
Q Consensus       310 ~~la~~~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G--~~  381 (532)
                      .++|++||++||+||++....      .........|+++  ++|.+++++ ...|++++++++++.+.......+  ..
T Consensus       250 ~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~-~plG~v~~~~~i~~~~~~~~~~~~~t~~  326 (472)
T 3hmu_A          250 QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGY-APIGGSIVCDEVAHVIGKDEFNHGYTYS  326 (472)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred             HHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCC-cceEEEEECHHHHHhcccCCccccCCCC
Confidence            999999999999999976421      1222334567876  679998754 346788889999888732111122  23


Q ss_pred             ccHHHHHHHHHhHHHHH--HHHHHHH-HHHHHHHHHHHhC---CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          382 LNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAKILEAH---PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~--~r~~~~~-~~a~~la~~L~~~---p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      .++..+..++..++.+.  ..+++.. ++.+++.+.|++.   |.+..+                  ++.|.++.|++..
T Consensus       327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------r~~G~~~~i~~~~  388 (472)
T 3hmu_A          327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA------------------KIVGMMASIALTP  388 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE------------------EEETTEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EecCceEEEEEec
Confidence            46777777777776543  2344555 5666777777543   222221                  3467899999864


Q ss_pred             C-----------HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHH
Q 009523          456 D-----------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFED  520 (532)
Q Consensus       456 ~-----------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~d  520 (532)
                      +           ......+.+.|...++.+..+                         |   +.|||+..+    |+.++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------g---~~iRi~p~~~~t~e~i~~  440 (472)
T 3hmu_A          389 NKASRAKFASEPGTIGYICRERCFANNLIMRHV-------------------------G---DRMIISPPLVITPAEIDE  440 (472)
T ss_dssp             CGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE-------------------------T---TEEEECCCTTCCHHHHHH
T ss_pred             CccccccccchhHHHHHHHHHHHHHCCcEEEec-------------------------C---CEEEEECCCCCCHHHHHH
Confidence            3           122445555554334322211                         1   689999554    44566


Q ss_pred             HHHHHHHHHh
Q 009523          521 LKADVLQALH  530 (532)
Q Consensus       521 li~dL~~AL~  530 (532)
                      +++.|+++|+
T Consensus       441 ~l~~l~~~l~  450 (472)
T 3hmu_A          441 MFVRIRKSLD  450 (472)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666664

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.82  E-value=3.1e-19  Score=192.90  Aligned_cols=241  Identities=12%  Similarity=0.148  Sum_probs=158.6

Q ss_pred             CCCCCCCCchhHHHHH----HHHHhhhCC---CcEEEeCCHHHHHHHHHHHh----c---------cC------CC-EEE
Q 009523          192 SFEYGRYGNPTTVVVE----EKMSALEGA---ESTVIMASGMSASTVMLLAL----V---------PA------GG-HIV  244 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le----~~lA~l~ga---~~~i~~sSG~~Ai~~al~al----l---------~~------Gd-~VI  244 (532)
                      .+.|+.  .|...++|    ++|++++|.   +..+++++|++|+..++.++    +         ++      || +|+
T Consensus       129 ~~~~~~--~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~  206 (497)
T 2qma_A          129 MDSWDQ--ASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIV  206 (497)
T ss_dssp             TTCGGG--CHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEE
T ss_pred             ccchhh--ChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEE
Confidence            344443  34555554    459999987   45788888999999888873    3         13      46 899


Q ss_pred             EcCCCCcchHHHHHHhcccCCc-EEEEeCCC-----CHHHHHHhhcCC---C--eeEEEEeCCCCCCCcccCHHHHHHHH
Q 009523          245 TTTDCYRKTRIFIETVLPKMGI-TATVIDPA-----DMEGLEAALNNN---N--VSLFFTESPTNPFLRCVDVKLVSDLC  313 (532)
Q Consensus       245 v~~~~y~~t~~~~~~~l~~~Gv-~v~~vd~~-----dle~Le~al~~~---~--tklV~lesP~NptG~v~dl~~I~~la  313 (532)
                      ++...|.+....+.. +. .|. +++.++.+     |+++|++++++.   .  +.+|+++.++|++|.+.|+++|+++|
T Consensus       207 ~s~~~h~s~~~~~~~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~  284 (497)
T 2qma_A          207 CSKKSHFTVQKSASW-MG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA  284 (497)
T ss_dssp             EETTSCTHHHHHHHH-TT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred             ECCCchHHHHHHHHH-cC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            999999886544322 21 143 67777654     899999998652   1  34888999999999999999999999


Q ss_pred             HhCCCEEEEECCCCCCCccccc-----cc-CCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhc-CC-----
Q 009523          314 HKKGAIVCIDGTFATPLNQKAL-----SL-GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL-GG-----  380 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~~~~~~l-----~~-gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~-G~-----  380 (532)
                      +++|+++|+|++|+.+....+.     .. ++|+++.|+||+++++.+  .|+++.+ +..++.+....... +.     
T Consensus       285 ~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~  362 (497)
T 2qma_A          285 VKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYLNREHDELP  362 (497)
T ss_dssp             HHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC-------------
T ss_pred             HHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhcCCccccCC
Confidence            9999999999998765332111     12 679999999998887653  4655554 44333321100000 00     


Q ss_pred             -----------CccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCccc
Q 009523          381 -----------ALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG  447 (532)
Q Consensus       381 -----------~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~  447 (532)
                                 .......|.+++  +.+.+..++++..++++++.+.|++.+++..+..|                 .++
T Consensus       363 ~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~  425 (497)
T 2qma_A          363 NLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-----------------SLS  425 (497)
T ss_dssp             -------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-----------------SSS
T ss_pred             CccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-----------------Cce
Confidence                       011223344444  23445666777888999999999988776432222                 245


Q ss_pred             EEEEEEcC
Q 009523          448 VVSFEVDG  455 (532)
Q Consensus       448 ~vsf~l~g  455 (532)
                      +++|.+.+
T Consensus       426 ~v~f~~~~  433 (497)
T 2qma_A          426 TVLFRATH  433 (497)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            89998864

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.82  E-value=8.7e-19  Score=186.17  Aligned_cols=279  Identities=15%  Similarity=0.162  Sum_probs=177.5

Q ss_pred             hhHHHHHHHHHhhhCCCcE--EEeCCHHHHHHHHHHH-hccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC---
Q 009523          201 PTTVVVEEKMSALEGAEST--VIMASGMSASTVMLLA-LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~--i~~sSG~~Ai~~al~a-ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~---  274 (532)
                      +...++++.+++++|.+..  +++++|+.++..++.+ .+++||+|+++.+.|+++...+...++..|++++.++..   
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~  187 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR  187 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence            4467899999999998643  5666666444444433 357999999999999988776665566789999988742   


Q ss_pred             -CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECC-CCCCCcccccccCCcEEEECCcc----
Q 009523          275 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATK----  348 (532)
Q Consensus       275 -dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet-~a~~~~~~~l~~gaDivv~S~sK----  348 (532)
                       |+++    +++ +|++|++++| ||+|.+.|+++|+++|+++|+++|+|.. .+.+....+..+|+|+++.|.+|    
T Consensus       188 ~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~  261 (438)
T 1wyu_A          188 TPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLP  261 (438)
T ss_dssp             CCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCC
T ss_pred             cCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCC
Confidence             3333    665 6999999999 9999999999999999999999997743 22222223345789999999555    


Q ss_pred             -ccCCCCCcEEEEEEeChHHHHHHHHH-------------------------hhhcCC-Cc---cHHHH---HHHHHhH-
Q 009523          349 -FIGGHNDVLAGSISGSGKLVTQIRNL-------------------------HHVLGG-AL---NPNAA---YLIIRGM-  394 (532)
Q Consensus       349 -~lgg~gd~~gG~lv~~~~li~~l~~~-------------------------~~~~G~-~~---~~~~a---~l~l~~l-  394 (532)
                       +++|++   +|++++++++++.+...                         +...+. ..   ....+   +..+..+ 
T Consensus       262 ~~~~Gp~---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~  338 (438)
T 1wyu_A          262 MGFGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG  338 (438)
T ss_dssp             CGGGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCC---eeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhC
Confidence             344543   68999988776554210                         111121 11   22222   1112212 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          395 -KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       395 -~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                       +.+....++..++++++.+.|++.+++. +..|.    +           +-.++.|.++.+   ...+.+.|...++.
T Consensus       339 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----~-----------~~~~~~~~~~~~---~~~~~~~L~~~gi~  399 (438)
T 1wyu_A          339 PEGLREVALKSVEMAHKLHALLLEVPGVR-PFTPK----P-----------FFNEFALALPKD---PEAVRRALAERGFH  399 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCE-ECSCS----S-----------BCSEEEEECSSC---HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeE-ECCCC----C-----------eEEEEEEeCCCC---HHHHHHHHHHCCce
Confidence             2244455666788888999998877764 32221    1           123455655322   33444454434554


Q ss_pred             e--cCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          474 P--SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       474 v--s~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +  ..|..+                        .++.||||++..++++.++.+.++|++
T Consensus       400 v~~~~~~~~------------------------~~~~lRis~~~~~t~edi~~~~~~l~~  435 (438)
T 1wyu_A          400 GATPVPREY------------------------GENLALFAATELHEEEDLLALREALKE  435 (438)
T ss_dssp             CCEECCTTS------------------------CSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ecccccccc------------------------CCCeEEEEecccCCHHHHHHHHHHHHH
Confidence            4  223210                        157899999976666666666666653

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.82  E-value=1.6e-18  Score=185.36  Aligned_cols=292  Identities=12%  Similarity=0.102  Sum_probs=184.8

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhc-----
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-----  261 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l-----  261 (532)
                      .|.+.++.++...+|+++|+++.+.   +++++++||++|+..+++.+.  ..+++||+.++.|++........-     
T Consensus        98 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~  177 (453)
T 4ffc_A           98 HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMP  177 (453)
T ss_dssp             CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred             ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcc
Confidence            3555678889999999999999863   568899999999999997664  355899999999988543221110     


Q ss_pred             -----ccCCcEEEEeCCC----C-------------HHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009523          262 -----PKMGITATVIDPA----D-------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  315 (532)
Q Consensus       262 -----~~~Gv~v~~vd~~----d-------------le~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~  315 (532)
                           ......+..++..    |             ++.|++++.+.++++|++|..++..|.+.+    +++|.++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~  257 (453)
T 4ffc_A          178 YKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE  257 (453)
T ss_dssp             TTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             cccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence                 1111133444332    2             366777775535677777655555566666    9999999999


Q ss_pred             CCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHH
Q 009523          316 KGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  389 (532)
Q Consensus       316 ~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l  389 (532)
                      ||+++|+||+|....      .........|++  +++|.+++ | ...|++++++++++.+...........++..+..
T Consensus       258 ~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aa  333 (453)
T 4ffc_A          258 NGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAA  333 (453)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred             cCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHH
Confidence            999999999976321      112223345665  47899987 4 4578888998888776543332233456777766


Q ss_pred             HHHhHHHHH--HHHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------CH
Q 009523          390 IIRGMKTLH--LRVQQQNSTALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DL  457 (532)
Q Consensus       390 ~l~~l~tl~--~r~~~~~~~a~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g------~~  457 (532)
                      ++..++.+.  ..+++..++.+++.+.|+    ++|.+..+                  ++.|.++++++..      ..
T Consensus       334 a~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~  395 (453)
T 4ffc_A          334 AVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV------------------RGRGAMLAIEIVKPGTLEPDA  395 (453)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE------------------EEETTEEEEEEBCTTSCCBCH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EeeceEEEEEEecCcccCCCH
Confidence            666666432  223344444555555444    44443322                  2357899999842      23


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH  530 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL~~AL~  530 (532)
                      .....+.+.+...++.+..++.                         .++.+||++.+.    +.++.++.|.++++
T Consensus       396 ~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  447 (453)
T 4ffc_A          396 ALTKSIAAEALSQGVLILTCGT-------------------------FGNVIRLLPPLVIGDDLLDEGITALSDIIR  447 (453)
T ss_dssp             HHHHHHHHHHHHTTEECCEECT-------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEecCCC-------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            4556676666555655543311                         246899987754    44555666666654

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.82  E-value=2.9e-19  Score=189.07  Aligned_cols=286  Identities=14%  Similarity=0.116  Sum_probs=187.8

Q ss_pred             CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHHh---------cc-c
Q 009523          197 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-K  263 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~-ga~~~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~~---------l~-~  263 (532)
                      .++++...+|+++|++++ +.+++++++||++|+..+++.+..  ++++||+.++.|++........         .. .
T Consensus        89 ~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~  168 (429)
T 3k28_A           89 GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDS  168 (429)
T ss_dssp             SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCC
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCc
Confidence            367889999999999998 457788899999999999987654  6789999999998632110000         00 0


Q ss_pred             CCc------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCC-
Q 009523          264 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-  330 (532)
Q Consensus       264 ~Gv------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~-  330 (532)
                      .++      .+..++.+|+++|++++++  .++++|++|.++|++|.+.+    +++|.++|++||+++|+||++.... 
T Consensus       169 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~  248 (429)
T 3k28_A          169 PGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRV  248 (429)
T ss_dssp             TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             CCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            011      3445566689999998862  25889999888888899988    9999999999999999999986431 


Q ss_pred             ----cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcC--CCccHHHHHHHHHhHHHH-HHHHH
Q 009523          331 ----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL-HLRVQ  402 (532)
Q Consensus       331 ----~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G--~~~~~~~a~l~l~~l~tl-~~r~~  402 (532)
                          .........|++  +++|.+++ | ...|++++++++++.+..... ..+  ...++..+..++..++.+ ....+
T Consensus       249 g~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~  324 (429)
T 3k28_A          249 AYNCGQGYYGVTPDLT--CLGKVIGG-G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYV  324 (429)
T ss_dssp             STTHHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHH
T ss_pred             CcchHHHHhCCCCcee--hhhhhhcC-C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence                111223345665  47899986 3 467899999988877654221 122  235677766666666532 33445


Q ss_pred             HHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------------CHHHHHHHHHH
Q 009523          403 QQNSTALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------------DLTATIKFIDA  466 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g------------~~~~~~~~l~~  466 (532)
                      +..++.+++.+.|++.    +.+..+                  ++.|.++++++..            +......+.+.
T Consensus       325 ~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (429)
T 3k28_A          325 EFERKAEMLEAGLRKAAEKHGIPHHI------------------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYRE  386 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCEE------------------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCEEE------------------EeeccEEEEEEecCCcccccccccccHHHHHHHHHH
Confidence            5556666666666542    322211                  2357788888742            12234556666


Q ss_pred             cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009523          467 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA  531 (532)
Q Consensus       467 L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~--ed~~dli~dL~~AL~~  531 (532)
                      +...++.+..|+                           .+.+|+++..  ++.+++++.|++++++
T Consensus       387 l~~~Gv~v~~~~---------------------------~~~~r~~~~~t~e~i~~~l~~l~~~l~~  426 (429)
T 3k28_A          387 MVEQGVFLPPSQ---------------------------FEGLFLSTVHSDADIEATIAAAEIAMSK  426 (429)
T ss_dssp             HHHTTEECCSST---------------------------TSCBCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCeEEecCC---------------------------CCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            655565554432                           2345665543  4566677777777764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.82  E-value=6.7e-19  Score=187.61  Aligned_cols=235  Identities=17%  Similarity=0.159  Sum_probs=152.5

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH---hccCCCEEEEcCCCCcchHHHHHHhc------c-cCCc
Q 009523          198 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVL------P-KMGI  266 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~-ga~~~i~~sSG~~Ai~~al~a---ll~~Gd~VIv~~~~y~~t~~~~~~~l------~-~~Gv  266 (532)
                      +.++..+++.+.++++. +.+++++++||++|+..+++.   +.+ +++||+.++.|++.........      . ..|+
T Consensus        94 ~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~  172 (453)
T 2cy8_A           94 ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV  172 (453)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC-------------------------
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC
Confidence            56778888888888887 456788999999999999987   544 5788888899987432211100      0 1233


Q ss_pred             ------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc---
Q 009523          267 ------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN---  331 (532)
Q Consensus       267 ------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~---  331 (532)
                            .+..++..|+++|++++++  .++++|+++.++|++|.+.+    +++|.++|++||+++|+||++.....   
T Consensus       173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~  252 (453)
T 2cy8_A          173 LPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNH  252 (453)
T ss_dssp             ---CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTT
T ss_pred             CccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCch
Confidence                  2445666799999999873  25889988777788999888    99999999999999999999873311   


Q ss_pred             --ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH---Hhhhc--CCCccHHHHHHHHHhHHH-H-HHHHH
Q 009523          332 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVL--GGALNPNAAYLIIRGMKT-L-HLRVQ  402 (532)
Q Consensus       332 --~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~---~~~~~--G~~~~~~~a~l~l~~l~t-l-~~r~~  402 (532)
                        ........|++  |++|.+++ | ..+|++++++++++.+..   .....  ....++..++++...++. + ....+
T Consensus       253 ~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~  328 (453)
T 2cy8_A          253 GMQALLDVQPDLT--CLAKASAG-G-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCA  328 (453)
T ss_dssp             HHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhhHHhCCCCcEE--EEChhhhC-C-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHH
Confidence              11123346765  68899996 3 458999999988876644   11111  123567777766666665 3 33345


Q ss_pred             HHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          403 QQNSTALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      +..++.+++.+.|++.    +.+..+                  ++.|.+++++++.
T Consensus       329 ~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i~~~~  367 (453)
T 2cy8_A          329 KINDLGQFAREAMNHLFARKGLNWLA------------------YGRFSGFHLMPGL  367 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEE------------------ECCTTEEEEEETS
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEE------------------EEeeeEEEEEEec
Confidence            5556666776666542    221111                  2357799999974

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.82  E-value=6.8e-19  Score=185.82  Aligned_cols=257  Identities=17%  Similarity=0.135  Sum_probs=171.3

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH--hccCCCEEEEcCCCCcchHHHHHHhc----------ccC
Q 009523          198 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVL----------PKM  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~-ga~~~i~~sSG~~Ai~~al~a--ll~~Gd~VIv~~~~y~~t~~~~~~~l----------~~~  264 (532)
                      +.++...+|+++|+++. +.+++++++||++|+..+++.  .+.++|.||+.++.|++.........          ...
T Consensus        89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~  168 (424)
T 2e7u_A           89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA  168 (424)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence            57788999999999998 567788999999999999885  23456889999999987432110000          012


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc-
Q 009523          265 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-  331 (532)
Q Consensus       265 Gv------~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~-  331 (532)
                      |+      .+..++..|+++|++++++  .++++|+++..++++|.+.+    +++|.++ ++||+++|+||++..... 
T Consensus       169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g  247 (424)
T 2e7u_A          169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA  247 (424)
T ss_dssp             TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS
T ss_pred             CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc
Confidence            32      3555666799999999862  25788887554455899888    9999999 999999999999874311 


Q ss_pred             ----ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcC--CCccHHHHHHHHHhHHHHHH---HH
Q 009523          332 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLHL---RV  401 (532)
Q Consensus       332 ----~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G--~~~~~~~a~l~l~~l~tl~~---r~  401 (532)
                          ........|++  |++|.+++ | ..+|++++++++++.+..... ..+  ...++..+..+...++.+..   ..
T Consensus       248 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  323 (424)
T 2e7u_A          248 FGGATELLGLKPDLV--TLGKILGG-G-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYY  323 (424)
T ss_dssp             TTHHHHHHTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHH
T ss_pred             hhHHHHHhCCCcchh--hhhhhhhC-C-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence                11122346765  78999996 3 458899999988877654211 122  13567766666666665432   44


Q ss_pred             HHHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHH
Q 009523          402 QQQNSTALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFID  465 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------------~~~~~~~l~  465 (532)
                      ++..++.+++.+.|++.    +.+..+                  ++.|.+++++++..            ......+.+
T Consensus       324 ~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (424)
T 2e7u_A          324 AYLEDLGARLEAGLKEVLKEKGLPHTV------------------NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFH  385 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEE------------------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEE------------------EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHH
Confidence            55566677777777653    221111                  23577999998641            234556777


Q ss_pred             HcCCCceeecCC
Q 009523          466 ALKIPYIAPSFG  477 (532)
Q Consensus       466 ~L~~~~i~vs~G  477 (532)
                      .|...++.+..|
T Consensus       386 ~l~~~Gv~v~~~  397 (424)
T 2e7u_A          386 GLLDRGIYWPPS  397 (424)
T ss_dssp             HHHTTTEECCSS
T ss_pred             HHHHCCeEEecc
Confidence            766567666554

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.82  E-value=2.6e-19  Score=191.02  Aligned_cols=295  Identities=17%  Similarity=0.116  Sum_probs=175.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccC-----C----CEEEEcCCCCcchHHHHHHhcccCCcEEEE
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----G----GHIVTTTDCYRKTRIFIETVLPKMGITATV  270 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~-----G----d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~  270 (532)
                      .+...+|+++|++++|.+++++++||++|+.+++.+++++     |    |+|++. ..|+.+......   ..|..+..
T Consensus        73 ~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~---~~~~~~~~  148 (467)
T 2oqx_A           73 SRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQ---INGCTVRN  148 (467)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHH---HTTCEEEE
T ss_pred             CchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhh---ccCcceee
Confidence            5678899999999999999999999999999999998888     9    998877 445443221111   11222211


Q ss_pred             ------eC------C---CCHHHHHHhhcC---CCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEECCCCC
Q 009523          271 ------ID------P---ADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT  328 (532)
Q Consensus       271 ------vd------~---~dle~Le~al~~---~~tklV~lesP~Npt-G~v~d---l~~I~~la~~~gi~lIvDet~a~  328 (532)
                            ++      .   .|+++|++++++   .++++|++++|+||+ |.+.+   +++|+++|++||+++|+|++++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~  228 (467)
T 2oqx_A          149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA  228 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             ccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhh
Confidence                  11      1   279999999973   269999999999998 88765   67999999999999999966432


Q ss_pred             --------------CCcccccc----cCCcEEEECCccccCCCCCcEEEEEEeChH-HHHH---HHHHhhhcC-----CC
Q 009523          329 --------------PLNQKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQ---IRNLHHVLG-----GA  381 (532)
Q Consensus       329 --------------~~~~~~l~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~-li~~---l~~~~~~~G-----~~  381 (532)
                                    +.....+.    ..+|+++.|+||+++.+   +||+++++++ +++.   ++......+     +.
T Consensus       229 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (467)
T 2oqx_A          229 ENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG  305 (467)
T ss_dssp             HHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCC
T ss_pred             hhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCcccccc
Confidence                          11111111    34788899999999865   3688888766 4444   333221111     11


Q ss_pred             ccHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc----C
Q 009523          382 LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD----G  455 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl--~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~----g  455 (532)
                      ........+..+++..  ..++++..++++++.+.|++. ++..+  |.                .|.++++.++    +
T Consensus       306 ~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~----------------~~~~~~~~~~~~~~~  366 (467)
T 2oqx_A          306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ--QA----------------GGHAAFVDAGKLLPH  366 (467)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE--EE----------------CSSCEEEEHHHHSTT
T ss_pred             hhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee--cC----------------CceEEEEechhhccc
Confidence            2222222222232322  234555667788889999876 44322  31                2456777763    1


Q ss_pred             -CHHH--HHHHHHHc-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC-C----HHHHHHHHH
Q 009523          456 -DLTA--TIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE-D----FEDLKADVL  526 (532)
Q Consensus       456 -~~~~--~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e-d----~~dli~dL~  526 (532)
                       +...  ...+.+.| ...++.++.|+.+.....|.   +.       .......+.|||+++.. .    .+++++.|.
T Consensus       367 ~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~---~g-------~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~  436 (467)
T 2oqx_A          367 IPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK---TG-------KQLPCPAELLRLTIPRATYTQTHMDFIIEAFK  436 (467)
T ss_dssp             SCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT---TC-------SBCCCSCCEEEECCCTTTSCHHHHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHhcCceeccccccccccccc---cc-------ccccCccCeEEEEecCCCCCHHHHHHHHHHHH
Confidence             1111  34455555 55577776644321100010   00       00001247999999975 3    444455555


Q ss_pred             HHHh
Q 009523          527 QALH  530 (532)
Q Consensus       527 ~AL~  530 (532)
                      ++++
T Consensus       437 ~~l~  440 (467)
T 2oqx_A          437 HVKE  440 (467)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.2e-18  Score=187.83  Aligned_cols=253  Identities=16%  Similarity=0.194  Sum_probs=174.5

Q ss_pred             CCCCCCCCchhHHHHHHHH----HhhhCCC------------cEEEeCCHHHHHHHHHHHhcc-----------------
Q 009523          192 SFEYGRYGNPTTVVVEEKM----SALEGAE------------STVIMASGMSASTVMLLALVP-----------------  238 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~l----A~l~ga~------------~~i~~sSG~~Ai~~al~all~-----------------  238 (532)
                      .+.|.  ..|...++|+.+    ++++|.+            ..+++++|++|+..++.+...                 
T Consensus       107 ~~~~~--~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~  184 (481)
T 4e1o_A          107 GFTWA--SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESS  184 (481)
T ss_dssp             CSSTT--TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred             cCCcC--CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCccccccc
Confidence            44454  467777777655    5566754            458889999999888876532                 


Q ss_pred             --CCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----CHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCH
Q 009523          239 --AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDV  306 (532)
Q Consensus       239 --~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~-----~tklV~lesP~NptG~v~dl  306 (532)
                        +++.|+++...|.+.....    ...|++++.++.+     |+++|+++|++.     .+.+|+++.++|++|.+.|+
T Consensus       185 ~~~~~~v~~s~~~H~s~~~~~----~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l  260 (481)
T 4e1o_A          185 LNARLVAYASDQAHSSVEKAG----LISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCL  260 (481)
T ss_dssp             HHTTEEEEEETTSCHHHHHHH----HHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred             ccCCeEEEEcCcchHHHHHHH----HhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCH
Confidence              5789999999998865443    3357888888754     899999999752     17788999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEECCCCCCCcc----cccccC---CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH----Hh
Q 009523          307 KLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----LH  375 (532)
Q Consensus       307 ~~I~~la~~~gi~lIvDet~a~~~~~----~~l~~g---aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~----~~  375 (532)
                      ++|+++|++||+++++|++++.....    .....|   +|.++.++||+++.+.+. +++++.+++++.....    +.
T Consensus       261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl  339 (481)
T 4e1o_A          261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIYL  339 (481)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGGG
T ss_pred             HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchhc
Confidence            99999999999999999998764321    222224   599999999999977542 4455555544332110    00


Q ss_pred             h---------------hcCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhH
Q 009523          376 H---------------VLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA  438 (532)
Q Consensus       376 ~---------------~~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~  438 (532)
                      .               ..+........|.+++  +.+.+..++++..++++++.+.|++.|++.-+..|           
T Consensus       340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-----------  408 (481)
T 4e1o_A          340 RHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR-----------  408 (481)
T ss_dssp             CCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-----------
T ss_pred             cCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------
Confidence            0               0111123444555444  44567778888889999999999998876432211           


Q ss_pred             hhhcCCcccEEEEEEcCCHHHHHHHHHHcC
Q 009523          439 TQQMTGFGGVVSFEVDGDLTATIKFIDALK  468 (532)
Q Consensus       439 ~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~  468 (532)
                            ..++++|.+++.......+.+.|.
T Consensus       409 ------~~~~v~f~~~~~~~~~~~l~~~L~  432 (481)
T 4e1o_A          409 ------HLGLVVFRLKGPNSLTENVLKEIA  432 (481)
T ss_dssp             ------CSSEEEEEESSCHHHHHHHHHHHH
T ss_pred             ------ceeEEEEEeCCchHHHHHHHHHHH
Confidence                  246899999765444566666664

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.82  E-value=5.9e-19  Score=199.93  Aligned_cols=218  Identities=13%  Similarity=0.057  Sum_probs=157.4

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      +-.........+++.+++++|.++.+++++|+ +|+.+++.+++++||+|++++++|.+....+    ...|+++++++.
T Consensus       199 ~L~~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~  274 (755)
T 2vyc_A          199 SLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVP  274 (755)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECC
T ss_pred             ccccCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeC
Confidence            33345567888999999999998888888886 8899999999999999999999999876543    345888887753


Q ss_pred             C---------------CHHHHHHhhcCC-Cee--------EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC
Q 009523          274 A---------------DMEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       274 ~---------------dle~Le~al~~~-~tk--------lV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~  329 (532)
                      .               |+++|+++++++ +++        ++++++| ||+|.+.|+++|+++|+++|+++++|++++..
T Consensus       275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~  353 (755)
T 2vyc_A          275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_dssp             CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred             CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence            2               799999998642 344        8999998 69999999999999999999999999998754


Q ss_pred             Ccc-------cccccC--CcE------EEECCccccCCCCCcEEEEEEeChH--H--HHHHHHHhhhc-CCCccHHHHHH
Q 009523          330 LNQ-------KALSLG--ADL------VLHSATKFIGGHNDVLAGSISGSGK--L--VTQIRNLHHVL-GGALNPNAAYL  389 (532)
Q Consensus       330 ~~~-------~~l~~g--aDi------vv~S~sK~lgg~gd~~gG~lv~~~~--l--i~~l~~~~~~~-G~~~~~~~a~l  389 (532)
                      ...       .++ .|  +|+      ++.|+||+++|+.  .+|+++.+++  .  ...+......+ .++++......
T Consensus       354 ~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaa  430 (755)
T 2vyc_A          354 ARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICAS  430 (755)
T ss_dssp             GGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred             cccCcccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHH
Confidence            322       222 56  776      9999999999875  3677766443  1  23333322222 23334332222


Q ss_pred             HHHhHHH-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 009523          390 IIRGMKT-----LHLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       390 ~l~~l~t-----l~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      +..+++.     ...++++..++++++.+.|++.++
T Consensus       431 l~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          431 NDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2222321     345667777888888888876544

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.82  E-value=9.1e-19  Score=186.89  Aligned_cols=281  Identities=14%  Similarity=0.095  Sum_probs=180.0

Q ss_pred             CCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc---c-----------CCCEEEEcCCCCcchHHHH-
Q 009523          196 GRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV---P-----------AGGHIVTTTDCYRKTRIFI-  257 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all---~-----------~Gd~VIv~~~~y~~t~~~~-  257 (532)
                      .+|.++...+++++|+++++   .+++++++||++|+..+++.+.   +           +||+||+.++.|++..... 
T Consensus        96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~  175 (449)
T 2cjg_A           96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL  175 (449)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred             cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence            46788889999999999985   3578888999999999987542   2           2899999999998743211 


Q ss_pred             ---------HHhcccCCcEEEEeCCCC--H-------------HHHHHhhc--CCCeeEEEEeCCCCCCCcccC----HH
Q 009523          258 ---------ETVLPKMGITATVIDPAD--M-------------EGLEAALN--NNNVSLFFTESPTNPFLRCVD----VK  307 (532)
Q Consensus       258 ---------~~~l~~~Gv~v~~vd~~d--l-------------e~Le~al~--~~~tklV~lesP~NptG~v~d----l~  307 (532)
                               +.........+.+++..|  .             ++|+++++  ..++++|++|+++||+|.+.+    ++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~  255 (449)
T 2cjg_A          176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA  255 (449)
T ss_dssp             GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred             hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence                     011111122455566555  3             33888885  136999999887899998777    99


Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC------cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH-----Hhh
Q 009523          308 LVSDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-----LHH  376 (532)
Q Consensus       308 ~I~~la~~~gi~lIvDet~a~~~------~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~-----~~~  376 (532)
                      +|.++|++||+++|+||+|....      .........|++  |++|.+  +    .|++++++++++.+..     ...
T Consensus       256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~~~~~~l~~~~~~~~~~  327 (449)
T 2cjg_A          256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGRRVDEVADNVFAVPSRL  327 (449)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECGGGGGSTTCTTTSTTSS
T ss_pred             HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEEECHHHhhhhhhcccCCccc
Confidence            99999999999999999987421      112233456776  578998  2    4677788887765321     111


Q ss_pred             hcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh----CCC-ceEEeCCCCCCCchhhhHhhhcCCcccEE
Q 009523          377 VLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA----HPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVV  449 (532)
Q Consensus       377 ~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~----~p~-v~~V~~Pgl~s~p~~~l~~~~~~g~G~~v  449 (532)
                      ......++..+..+...++.+.  ...++..++.+++.+.|++    +|. +..+                  ++.|.++
T Consensus       328 ~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~------------------~~~g~~~  389 (449)
T 2cjg_A          328 NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP------------------RGRGLMC  389 (449)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE------------------EEETTEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE------------------eeccEEE
Confidence            1112345666666666665432  2334555666777777764    233 3222                  2357799


Q ss_pred             EEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHH
Q 009523          450 SFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADV  525 (532)
Q Consensus       450 sf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e----d~~dli~dL  525 (532)
                      +|++++ ......+.+.|...++.+..+                           .++.|||++++.    +.+++++.|
T Consensus       390 ~~~~~~-~~~~~~~~~~l~~~Gv~v~~~---------------------------g~~~iRi~~~~~~t~e~i~~~l~~l  441 (449)
T 2cjg_A          390 AFSLPT-TADRDELIRQLWQRAVIVLPA---------------------------GADTVRFRPPLTVSTAEIDAAIAAV  441 (449)
T ss_dssp             EEECSS-HHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             EEEECC-hHHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            998864 233455666664445544332                           147899987654    344555555


Q ss_pred             HHHHh
Q 009523          526 LQALH  530 (532)
Q Consensus       526 ~~AL~  530 (532)
                      .++++
T Consensus       442 ~~~l~  446 (449)
T 2cjg_A          442 RSALP  446 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.82  E-value=2.8e-18  Score=186.39  Aligned_cols=215  Identities=15%  Similarity=0.186  Sum_probs=152.9

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhc-------c-CCC------EEEEcCCCCcchHHHHHHhcccCCc
Q 009523          203 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-------P-AGG------HIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all-------~-~Gd------~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      ..++++.+++++|.+  .++++++|++|+..++.++.       + +||      +|+++...|++....+.    ..|+
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~----~~g~  225 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA----FLGL  225 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH----HTTS
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHH----HcCC
Confidence            345667799999974  57888899999988887763       2 576      89999999988665442    2344


Q ss_pred             ---EEEEeCCC-----CHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc
Q 009523          267 ---TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK  333 (532)
Q Consensus       267 ---~v~~vd~~-----dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~  333 (532)
                         +++.++.+     |+++|++++++.     ++++|++++|+|++|.+.|+++|+++|+++|+++|+|++++.+....
T Consensus       226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~  305 (515)
T 2jis_A          226 GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLS  305 (515)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred             CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhC
Confidence               77777653     799999998641     48999999999999999999999999999999999999987654321


Q ss_pred             c-----c-cc-CCcEEEECCccccCCCCCcEEEEEEeChH--HHHHHH----HHhh-----------------hcCCCcc
Q 009523          334 A-----L-SL-GADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIR----NLHH-----------------VLGGALN  383 (532)
Q Consensus       334 ~-----l-~~-gaDivv~S~sK~lgg~gd~~gG~lv~~~~--li~~l~----~~~~-----------------~~G~~~~  383 (532)
                      +     + .. ++|+++.|+||+++++.+  .|+++.+++  +++...    .+..                 ..+....
T Consensus       306 ~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~  383 (515)
T 2jis_A          306 QTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVD  383 (515)
T ss_dssp             TTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCC
T ss_pred             hhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCccc
Confidence            1     2 22 789999999999986542  577776654  655421    1110                 0011122


Q ss_pred             HHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhCCCceE
Q 009523          384 PNAAYLIIRGM--KTLHLRVQQQNSTALRMAKILEAHPKVKR  423 (532)
Q Consensus       384 ~~~a~l~l~~l--~tl~~r~~~~~~~a~~la~~L~~~p~v~~  423 (532)
                      ....|.+++.+  +.+...+++..++++++.+.|++.|++..
T Consensus       384 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  425 (515)
T 2jis_A          384 CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFEL  425 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            44455444433  34556667778889999999998877643

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.82  E-value=4.8e-18  Score=182.89  Aligned_cols=292  Identities=14%  Similarity=0.118  Sum_probs=189.4

Q ss_pred             CCCC-CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHHh-
Q 009523          193 FEYG-RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-  260 (532)
Q Consensus       193 ~~Y~-R~~~p~~~~Le~~lA~l~g--a~~~i~~sSG~~Ai~~al~all~--------~Gd~VIv~~~~y~~t~~~~~~~-  260 (532)
                      |.++ .+.++...+|+++|+++.+  .+.+++++||++|+..+++.+.+        .++.||+.++.|++........ 
T Consensus        88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~  167 (476)
T 3i5t_A           88 YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACT  167 (476)
T ss_dssp             CCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred             CcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhcccc
Confidence            4344 6788999999999999985  46788999999999999988753        3579999999998854222111 


Q ss_pred             --------cccCCcEEEEeCC-------C-C--------HHHHHHhhcC---CCeeEEEEeCCCCCCCcccC----HHHH
Q 009523          261 --------LPKMGITATVIDP-------A-D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  309 (532)
Q Consensus       261 --------l~~~Gv~v~~vd~-------~-d--------le~Le~al~~---~~tklV~lesP~NptG~v~d----l~~I  309 (532)
                              .......+.+++.       + |        +++|+++++.   .++++|++|+++|++|.+.+    +++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l  247 (476)
T 3i5t_A          168 GRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARF  247 (476)
T ss_dssp             CCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHH
T ss_pred             CChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence                    0111112333331       1 2        7889888862   36899999999999998666    9999


Q ss_pred             HHHHHhCCCEEEEECCCCCCC------ccc-ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH-------h
Q 009523          310 SDLCHKKGAIVCIDGTFATPL------NQK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------H  375 (532)
Q Consensus       310 ~~la~~~gi~lIvDet~a~~~------~~~-~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~-------~  375 (532)
                      .++|++||++||+||++....      ... ......|+++  ++|.++++ -...|++++++++++.+...       .
T Consensus       248 ~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~G-~~plg~v~~~~~i~~~~~~~~~~~~~~~  324 (476)
T 3i5t_A          248 KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTSG-YVPLGGLAISEAVLARISGENAKGSWFT  324 (476)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGTT-SSCCEEEEECHHHHHTTSGGGCTTCEEC
T ss_pred             HHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcCC-CcCeEEEEECHHHHHHHhcCCccccccc
Confidence            999999999999999976421      112 2333467775  67999863 13568888999988877643       1


Q ss_pred             hhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEE
Q 009523          376 HVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV  453 (532)
Q Consensus       376 ~~~G~~~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l  453 (532)
                      .......+|..+..++..++.+.  ..+++..++.+++.+.|++...     +|.+          ...++.|.++++++
T Consensus       325 ~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~v----------~~v~~~G~~~~i~~  389 (476)
T 3i5t_A          325 NGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRD-----LPGV----------AETRSVGLVGCVQC  389 (476)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTT-----STTE----------EEEEEETTEEEEEE
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-----CCCe----------EEEEecCceeEEEE
Confidence            11223356777777777776543  2345555667777777765321     1111          11234688999998


Q ss_pred             cCCHH----------HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHH
Q 009523          454 DGDLT----------ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFE  519 (532)
Q Consensus       454 ~g~~~----------~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~  519 (532)
                      ..+..          ....+.+.+...|+.+..                         .   .+.|||+..+    ++.+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-------------------------~---g~~iRi~p~l~~t~e~i~  441 (476)
T 3i5t_A          390 LLDPTRADGTAEDKAFTLKIDERCFELGLIVRP-------------------------L---GDLCVISPPLIISRAQID  441 (476)
T ss_dssp             CCC-----CCHHHHHHHHHHHHHHHHTTEECEE-------------------------E---TTEEEECCCTTCCHHHHH
T ss_pred             ecCccccccccchhHHHHHHHHHHHHCCCEEEe-------------------------c---CCEEEEECCCCCCHHHHH
Confidence            75311          244555555433433221                         1   2689999554    4556


Q ss_pred             HHHHHHHHHHh
Q 009523          520 DLKADVLQALH  530 (532)
Q Consensus       520 dli~dL~~AL~  530 (532)
                      ++++.|+++|+
T Consensus       442 ~~l~~l~~~l~  452 (476)
T 3i5t_A          442 EMVAIMRQAIT  452 (476)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666664

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.81  E-value=1.9e-18  Score=186.05  Aligned_cols=249  Identities=14%  Similarity=0.110  Sum_probs=170.2

Q ss_pred             CchhHHHHHHHH----HhhhCCC-----------cEEEeCCHHHHHHHHHHHhc-------------------cCCCEEE
Q 009523          199 GNPTTVVVEEKM----SALEGAE-----------STVIMASGMSASTVMLLALV-------------------PAGGHIV  244 (532)
Q Consensus       199 ~~p~~~~Le~~l----A~l~ga~-----------~~i~~sSG~~Ai~~al~all-------------------~~Gd~VI  244 (532)
                      ..|...++|+.+    ++++|.+           ..+++++|++|+..++.+..                   .+++.|+
T Consensus       107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi  186 (475)
T 3k40_A          107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY  186 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence            467777777655    6677765           47889999999888877652                   1356899


Q ss_pred             EcCCCCcchHHHHHHhcccCCcEEEEeCC----CCHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHh
Q 009523          245 TTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHK  315 (532)
Q Consensus       245 v~~~~y~~t~~~~~~~l~~~Gv~v~~vd~----~dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la~~  315 (532)
                      ++...|.+.....    ...|++++.++.    .|+++|+++|++.     .+.+|++..++|++|.+.|+++|+++|++
T Consensus       187 ~s~~~H~s~~~~~----~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~  262 (475)
T 3k40_A          187 CSDQAHSSVERAG----LLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK  262 (475)
T ss_dssp             EETTSCHHHHHHH----HHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred             ECCCchHHHHHHH----HHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH
Confidence            9999998865443    345888888886    3899999999752     16788889999999999999999999999


Q ss_pred             CCCEEEEECCCCCCCcc----ccccc---CCcEEEECCccccCCCCCcEEEEEEeChHHH-HHHHH---Hh-hh------
Q 009523          316 KGAIVCIDGTFATPLNQ----KALSL---GADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRN---LH-HV------  377 (532)
Q Consensus       316 ~gi~lIvDet~a~~~~~----~~l~~---gaDivv~S~sK~lgg~gd~~gG~lv~~~~li-~~l~~---~~-~~------  377 (532)
                      ||+++++|++++.+...    .....   .+|.++.++||+++++.+ .+++++.+++++ +.+..   +. ..      
T Consensus       263 ~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~  341 (475)
T 3k40_A          263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD-CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP  341 (475)
T ss_dssp             TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESSGGGC--------------------
T ss_pred             hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc-eEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence            99999999998764321    11112   369999999999887653 244444444442 22111   00 00      


Q ss_pred             --------cCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCccc
Q 009523          378 --------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG  447 (532)
Q Consensus       378 --------~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~  447 (532)
                              .+........|.+++  +.+.+..++++..++++++.+.|++.|++..+..|                 ..+
T Consensus       342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-----------------~~~  404 (475)
T 3k40_A          342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-----------------NMG  404 (475)
T ss_dssp             -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-----------------BTT
T ss_pred             CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-----------------ceE
Confidence                    000112334444443  34556777788889999999999998887533212                 246


Q ss_pred             EEEEEEcCCHHHHHHHHHHcCC
Q 009523          448 VVSFEVDGDLTATIKFIDALKI  469 (532)
Q Consensus       448 ~vsf~l~g~~~~~~~~l~~L~~  469 (532)
                      +++|.+++.......+.+.|..
T Consensus       405 iv~f~~~~~~~~~~~l~~~L~~  426 (475)
T 3k40_A          405 LVCFRLKGSNERNEALLKRING  426 (475)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCchHHHHHHHHHHHh
Confidence            8999997654455666666653

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.80  E-value=1.4e-18  Score=183.48  Aligned_cols=258  Identities=16%  Similarity=0.160  Sum_probs=170.3

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHH----------HhcccC
Q 009523          198 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~g-a~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~----------~~l~~~  264 (532)
                      +.++...+|+++++++++ .+++++++||++|+..+++...  ..+++||+.++.|++......          ......
T Consensus        89 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  168 (427)
T 3fq8_A           89 APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP  168 (427)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCS
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCC
Confidence            378899999999999985 4678888999999999985432  345789999999987321100          000011


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCC--
Q 009523          265 GI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL--  330 (532)
Q Consensus       265 Gv------~v~~vd~~dle~Le~al~~~--~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~--  330 (532)
                      |+      .+..++.+|+++|+++++++  ++++|++++++|++|.+.+    +++|.++|++||+++|+||++....  
T Consensus       169 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g  248 (427)
T 3fq8_A          169 GVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA  248 (427)
T ss_dssp             SSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB
T ss_pred             CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence            21      24556667999999998652  6899999999999999999    9999999999999999999987331  


Q ss_pred             ---cccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-hcCC--CccHHHHHHHHHhHHHH--HHHHH
Q 009523          331 ---NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTL--HLRVQ  402 (532)
Q Consensus       331 ---~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-~~G~--~~~~~~a~l~l~~l~tl--~~r~~  402 (532)
                         .........|++  |++|.+++ | ..+|++++++++++.+..... ..+.  ..++..++.+...++.+  ...++
T Consensus       249 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~  324 (427)
T 3fq8_A          249 YGGVQEKFGVTPDLT--TLGKIIGG-G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE  324 (427)
T ss_dssp             TTHHHHHTTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cchhhHhcCCCCChh--hhhhhhhC-C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence               111223345665  57799995 3 467899999998887654211 1232  24677777666666543  23344


Q ss_pred             HHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHHH
Q 009523          403 QQNSTALRMAKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFIDA  466 (532)
Q Consensus       403 ~~~~~a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~------------~~~~~~~l~~  466 (532)
                      +..++.+++.+.|++.    +....                  .++.|.+++|++...            ......+.+.
T Consensus       325 ~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (427)
T 3fq8_A          325 YLDQITKRLSDGLLAIAQETGHAAC------------------GGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRG  386 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCE------------------EEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCeE------------------EEEeeeEEEEEEecCccccccccccccHHHHHHHHHH
Confidence            5556666666666542    21111                  123577899988542            1224456666


Q ss_pred             cCCCceeecCC
Q 009523          467 LKIPYIAPSFG  477 (532)
Q Consensus       467 L~~~~i~vs~G  477 (532)
                      +...++.+..+
T Consensus       387 l~~~Gi~v~~~  397 (427)
T 3fq8_A          387 MLEQGIYLAPS  397 (427)
T ss_dssp             HHHTTEECCSS
T ss_pred             HHHCCcEEecC
Confidence            65456555443

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.80  E-value=8.4e-18  Score=177.49  Aligned_cols=217  Identities=15%  Similarity=0.091  Sum_probs=143.2

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh-CC-------Cc--EEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHH
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE-GA-------ES--TVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIET  259 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~-ga-------~~--~i~~sSG~~Ai~~al~all~--~Gd~VIv~~~~y~~t~~~~~~  259 (532)
                      .+.|+-  .....+|++++++++ +.       ++  .+++++|++|+.+++..++.  | |+|++++|+|.+..    .
T Consensus        65 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~----~  137 (405)
T 3k7y_A           65 EKPYLL--GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHV----N  137 (405)
T ss_dssp             CCCCCT--TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHH----H
T ss_pred             CCCCCC--CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHH----H
Confidence            345553  234567888888765 21       22  35666667999999998887  8 99999999998755    3


Q ss_pred             hcccCCcEEEEeCC-------CCHHHHHHhhcC-CCeeEEEEeCC-CCCCCcccC---HHHHHHHHHhCCCEEEEECCCC
Q 009523          260 VLPKMGITATVIDP-------ADMEGLEAALNN-NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  327 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~-------~dle~Le~al~~-~~tklV~lesP-~NptG~v~d---l~~I~~la~~~gi~lIvDet~a  327 (532)
                      .++..|.++..++.       .|+++|++++++ .++++|++++| |||||.+++   +++|+++|+++|+++|+||+|.
T Consensus       138 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~  217 (405)
T 3k7y_A          138 MIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ  217 (405)
T ss_dssp             HHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT
T ss_pred             HHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc
Confidence            45567888877753       178999998863 24688998765 899999998   5568888999999999999987


Q ss_pred             CCCcc---------ccc-cc-CCcEEEECCccccCCCCCcEEEEEEe---ChHHHHHHHH----HhhhcCCCccHHHHHH
Q 009523          328 TPLNQ---------KAL-SL-GADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRN----LHHVLGGALNPNAAYL  389 (532)
Q Consensus       328 ~~~~~---------~~l-~~-gaDivv~S~sK~lgg~gd~~gG~lv~---~~~li~~l~~----~~~~~G~~~~~~~a~l  389 (532)
                      .....         ..+ .. ...+++.|+||.|+-.|. +.|++++   ++++++.+..    .......+.+.+.+.+
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~Gl-RiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~  296 (405)
T 3k7y_A          218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGE-RAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRI  296 (405)
T ss_dssp             TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTT-TEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccc-cceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence            54321         011 11 245889999999986664 4677643   5666655532    2222222333444333


Q ss_pred             HHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Q 009523          390 IIRGMK----------TLHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       390 ~l~~l~----------tl~~r~~~~~~~a~~la~~L~  416 (532)
                      +...++          .+....++..++++.+.+.|+
T Consensus       297 ~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          297 LCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222          122223445577778888888

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.79  E-value=8.9e-19  Score=183.04  Aligned_cols=281  Identities=12%  Similarity=0.040  Sum_probs=187.5

Q ss_pred             chhHHHHHHHHHhhhCCC--c-EEEe-CCHHHHHHHHHHHhccC--CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          200 NPTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~--~-~i~~-sSG~~Ai~~al~all~~--Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ....++.|+.|++++|++  . ++++ ++|++++++++..++.+  ||+|++....+.+..  +...+++.|..++.++.
T Consensus        57 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~--~~~~a~~~G~~~~~~~~  134 (377)
T 3e77_A           57 AKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAK--AAEEAKKFGTINIVHPK  134 (377)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHH--HHHHHTTTSEEEECSCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHH--HHHHHHHhCCceEEecc
Confidence            345677899999999984  3 4554 57789999999999865  999988777666542  33567788988776653


Q ss_pred             C-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCc
Q 009523          274 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  347 (532)
Q Consensus       274 ~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~s  347 (532)
                      +     ++++++.++++ +|++|.+.+..|.||.+.|+     +|+++|+++++|.+++.+ .+++..+++  +++.|.+
T Consensus       135 ~~~~~~~~~~~~~~i~~-~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~  206 (377)
T 3e77_A          135 LGSYTKIPDPSTWNLNP-DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQ  206 (377)
T ss_dssp             CSSSCSCCCGGGCCCCT-TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGG
T ss_pred             CCCcCCCCChHHhccCC-CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecc
Confidence            2     46677777776 79999998888889999998     478899999999998764 345555555  6889999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHH----------HHh--hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIR----------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  409 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~----------~~~--~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~~~a~  409 (532)
                      |++|++|   .|+++.++++++++.          ...  ....++++....+.+..+++.      +..+.++..+.++
T Consensus       207 K~~gp~G---~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~  283 (377)
T 3e77_A          207 KNVGSAG---VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQ  283 (377)
T ss_dssp             GTTSCTT---CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccCCCc---cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9998777   566766554432211          110  111234555555544444443      3344455667788


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      ++.+.|++.|++. + .|.   .+.+        ..+.+++|.+++-   .+....|++.+...++.+..|.-       
T Consensus       284 ~l~~~L~~~~g~~-~-~~~---~~~~--------rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~-------  343 (377)
T 3e77_A          284 TIYEIIDNSQGFY-V-CPV---EPQN--------RSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHR-------  343 (377)
T ss_dssp             HHHHHHHTSTTSE-E-CCS---CGGG--------BCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCT-------
T ss_pred             HHHHHHHhcCCce-e-cCC---CHHH--------cCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCC-------
Confidence            8888888887763 2 221   1111        2355799999862   22224677766555665543310       


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                        ..+.+|+|++..++++.++.|.++|++
T Consensus       344 ------------------~~g~iRiS~~~~~t~edId~l~~al~~  370 (377)
T 3e77_A          344 ------------------SVGGIRASLYNAVTIEDVQKLAAFMKK  370 (377)
T ss_dssp             ------------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ------------------cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                              124599999988777777777777754

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.78  E-value=2.5e-18  Score=180.34  Aligned_cols=282  Identities=12%  Similarity=-0.014  Sum_probs=178.2

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~---~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ++......++.|+.|++++|++   ++++ +++|++++++++..++++||+|++....+.+..  +...+++.| +++++
T Consensus        67 ~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~--~~~~a~~~G-~v~~v  143 (386)
T 3qm2_A           67 GKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS--AIKEAKKYC-APQII  143 (386)
T ss_dssp             ------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTTTS-EEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH--HHHHHHHhC-CeEEE
Confidence            3334567788999999999984   2555 368889999999999999999876655555542  224466778 77776


Q ss_pred             CCC--------CHHHHHHhhcCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcE
Q 009523          272 DPA--------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADL  341 (532)
Q Consensus       272 d~~--------dle~Le~al~~~~tklV~lesP~NptG~v-~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDi  341 (532)
                      +.+        ++++++.++++ +|++|++.+..|.+|.+ .|+++|.     +|+++++|.+++.+ .+++..+++  +
T Consensus       144 ~~~~~~~G~~~~~~~~~~~l~~-~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~  215 (386)
T 3qm2_A          144 DAKITVDGKRAVKPMREWQLSD-NAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--V  215 (386)
T ss_dssp             ECEEEETTEEEECCGGGCCCCT-TCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--E
T ss_pred             ecCcccCCCCCCchHHHhhcCC-CCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--E
Confidence            543        45777888877 79999987777888996 8988885     79999999998764 445555554  6


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHH----------Hh--hhcCCCccHHHHHHHHHhHHH------HHHHHHH
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----------LH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQ  403 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~----------~~--~~~G~~~~~~~a~l~l~~l~t------l~~r~~~  403 (532)
                      ++.|.+|++|+.|   .|+++.++++++++..          ..  ....++.+....+.+..+++.      +..+.++
T Consensus       216 ~~~s~hK~lGP~G---~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~  292 (386)
T 3qm2_A          216 IYAGAQKNIGPAG---LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKI  292 (386)
T ss_dssp             EEEETTTTTCCTT---EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             EEEecccccCCCc---cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7799999998776   6777776655322110          00  001112222223333333333      2333445


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccc
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV  483 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~  483 (532)
                      ..+.++++.+.|++.+ +.  ..+.   .+.+        ..+++++|.+++.... ..++..|+..++.+..|.-    
T Consensus       293 ~~~l~~~l~~~l~~~~-~~--~~~~---~~~~--------rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~----  353 (386)
T 3qm2_A          293 NQQKAELLYGVIDNSD-FY--RNDV---AQAN--------RSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHR----  353 (386)
T ss_dssp             HHHHHHHHHHHHHTCS-SE--ECCB---CGGG--------BCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCT----
T ss_pred             HHHHHHHHHHHHHHCC-Cc--ccCC---CHHH--------cCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCC----
Confidence            5566777777777652 21  1111   1111        2356999999852223 5666666666766544411    


Q ss_pred             ccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          484 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       484 ~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                           ..+.+|+|++..++++.|+.|.++|++
T Consensus       354 ---------------------~~~~iRiS~~~~~t~edId~l~~~l~~  380 (386)
T 3qm2_A          354 ---------------------VVGGMRASIYNAMPIEGVKALTDFMID  380 (386)
T ss_dssp             ---------------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ---------------------CcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence                                 013499999998877778888777764

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.74  E-value=7.2e-17  Score=167.76  Aligned_cols=275  Identities=11%  Similarity=0.008  Sum_probs=178.1

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-
Q 009523          200 NPTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~---~~i~-~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-  274 (532)
                      ....++.|+.+++++|++   ++++ +++|++++++++..++ +||++++....+.+..  +...+++.|+++++++.+ 
T Consensus        49 ~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~--~~~~a~~~G~~v~~~~~~~  125 (361)
T 3m5u_A           49 EEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKK--AIKEAQILGVNVKTVASSE  125 (361)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHH--HHHHHHHTTCCEEEEEECT
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHH--HHHHHHHcCCceEEEeccc
Confidence            356777899999999983   3455 4666799999999998 8886522222232322  223456678888776422 


Q ss_pred             ------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCc
Q 009523          275 ------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  347 (532)
Q Consensus       275 ------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~s  347 (532)
                            ++++  + +++ +|++|.+.+..|.+|.+.|.     +++ +|+++++|.+++.+. +++..  ..|+++.|.+
T Consensus       126 ~g~~~~~~~~--~-l~~-~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~  193 (361)
T 3m5u_A          126 ESNFDHIPRV--E-FSD-NADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQ  193 (361)
T ss_dssp             TTTSCSCCCC--C-CCT-TSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETT
T ss_pred             CcCCCcCChh--h-cCC-CCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEech
Confidence                  3455  3 776 79999998888888999772     444 499999999977542 33333  3689999999


Q ss_pred             cccCCCCCcEEEEEEeChHHHHHHHH--------Hh-----hhcCCCccHHHHHHHHHhHHHH------HHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGSGKLVTQIRN--------LH-----HVLGGALNPNAAYLIIRGMKTL------HLRVQQQNSTA  408 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~~~li~~l~~--------~~-----~~~G~~~~~~~a~l~l~~l~tl------~~r~~~~~~~a  408 (532)
                      |++|++|   .|+++.++++++++..        +.     ....++++....+.+..+++.+      ..+.++..+.+
T Consensus       194 K~~gp~G---~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~  270 (361)
T 3m5u_A          194 KNAGISG---LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKA  270 (361)
T ss_dssp             TTSSCTT---CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hccCCCc---cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9998776   6888888888776643        00     0111344544444444455433      33445556777


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHcCCCceeecCCCcccccccCc
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDALKIPYIAPSFGGCESIVDQPA  487 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa  487 (532)
                      +++.+.|++.+++.....+     +.+        ..+++++|.+++ .... ..++..|+..++.+..|..        
T Consensus       271 ~~l~~~L~~~~g~~~~~~~-----~~~--------rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~--------  328 (361)
T 3m5u_A          271 TMLYECIDLSNGFYKGHAD-----KKD--------RSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHR--------  328 (361)
T ss_dssp             HHHHHHHHTSTTSEEESSC-----GGG--------BCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCT--------
T ss_pred             HHHHHHHHHCCCeeeccCC-----HHH--------cCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCC--------
Confidence            7888888887765223211     111        135689999986 1122 3566666666776554411        


Q ss_pred             cccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          488 IMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       488 ~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                       ..+.+|+|++..++++.++.+.++|++
T Consensus       329 -----------------~~g~iRiS~~~~~t~edId~l~~al~~  355 (361)
T 3m5u_A          329 -----------------ILGGIRASIYNALNLDQVKTLCEFMKE  355 (361)
T ss_dssp             -----------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -----------------ccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence                             014599999998877777888777764

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.59  E-value=1.4e-19  Score=194.22  Aligned_cols=240  Identities=15%  Similarity=0.142  Sum_probs=159.4

Q ss_pred             CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcccCCc--EEEEe
Q 009523          197 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI  271 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~-ga~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv--~v~~v  271 (532)
                      +|.++...+|+++|++++ +.+.+++++||++|+..+++...  ..+|+||+.+..|++.......-....|+  .+..+
T Consensus       136 ~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~  215 (465)
T 2yky_A          136 STQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLG  215 (465)
Confidence            467888999999999999 66788999999999999988642  34589999999998743211100012344  44455


Q ss_pred             CCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCCc
Q 009523          272 DPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGAD  340 (532)
Q Consensus       272 d~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~gaD  340 (532)
                      +.+|+++|++++++  .++++|++|++.|++|.+.+    +++|.++|+++|+++|+||++. +..     +.......|
T Consensus       216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD  294 (465)
T 2yky_A          216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD  294 (465)
Confidence            66789999999973  26999999887777998877    8999999999999999999987 311     111122345


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHH--h---hhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHH
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H---HVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAK  413 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~--~---~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~  413 (532)
                      ++  |++|++|+ | ...|++++++++++.+...  .   .......+|..+..++..++.+..  ..++..+..+++.+
T Consensus       295 i~--t~sK~lg~-G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~  370 (465)
T 2yky_A          295 LT--TLGKYIGG-G-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA  370 (465)
Confidence            54  78999997 4 4678999999998877651  1   111123456666555555554421  22333344445555


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG  455 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g  455 (532)
                      .|++..  ..  ++.          ....++.|.+++|++.+
T Consensus       371 ~L~~~~--~~--~~~----------~~~v~g~G~~~~i~~~~  398 (465)
T 2yky_A          371 NLNRIA--VE--NQA----------PLQFTGLGSLGTIHFSR  398 (465)
Confidence            444321  00  110          01124578899998864

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.73  E-value=1.2e-16  Score=178.73  Aligned_cols=213  Identities=12%  Similarity=0.126  Sum_probs=155.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+.....++|+.+|+++|+++++++++|+ .|+..++.+++++||+|++++++|.+....    +...|.++++++..  
T Consensus       192 ~~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~~~  267 (715)
T 3n75_A          192 DHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPTRN  267 (715)
T ss_dssp             TTBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCCBC
T ss_pred             CCcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecccc
Confidence            45567899999999999999999999996 999999999999999999999999987643    44568888887642  


Q ss_pred             -------------CHHHHHHhhcCC-Cee---EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-----
Q 009523          275 -------------DMEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-----  332 (532)
Q Consensus       275 -------------dle~Le~al~~~-~tk---lV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-----  332 (532)
                                   |+++|+++++++ ++|   +|++++| |++|.+.|+++|.++|++++  +++|++++..+.+     
T Consensus       268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~  344 (715)
T 3n75_A          268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE  344 (715)
T ss_dssp             TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred             ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence                         799999999742 345   8999999 89999999999999998764  7999998765421     


Q ss_pred             --cccccC--CcEE---EECCccccCCCCCcEEEEEEeChHH-HHHHHHHhhhcC-CCccHHHHHHHHHhHHH-----HH
Q 009523          333 --KALSLG--ADLV---LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG-GALNPNAAYLIIRGMKT-----LH  398 (532)
Q Consensus       333 --~~l~~g--aDiv---v~S~sK~lgg~gd~~gG~lv~~~~l-i~~l~~~~~~~G-~~~~~~~a~l~l~~l~t-----l~  398 (532)
                        ..+..|  +|++   ++|+||++++..  .+|++..++++ .+.+......+. +.+++...+.+..+++.     -.
T Consensus       345 ~~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~  422 (715)
T 3n75_A          345 GKCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGK  422 (715)
T ss_dssp             TSSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHH
T ss_pred             cccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccH
Confidence              223333  6766   899999999853  36777765432 233444333333 34444433322323322     23


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC
Q 009523          399 LRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p  419 (532)
                      .++++..++++++.+.|++.+
T Consensus       423 ~~~~~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          423 RLINGSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            456677788888888887654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.71  E-value=2.7e-16  Score=169.07  Aligned_cols=275  Identities=13%  Similarity=0.135  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHhc-------c------------------CC---CEEEEcCCCCc
Q 009523          202 TTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV-------P------------------AG---GHIVTTTDCYR  251 (532)
Q Consensus       202 ~~~~Le~~lA~l~--ga~~~i~~sSG~~Ai~~al~all-------~------------------~G---d~VIv~~~~y~  251 (532)
                      ..+.++++|+++.  +.+.+++++||++|+..+++.+.       +                  ||   ++||+.++.|+
T Consensus       111 l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yH  190 (472)
T 1ohv_A          111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH  190 (472)
T ss_dssp             HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcc
Confidence            3444455455555  44678999999999999998763       1                  46   89999999998


Q ss_pred             chHHHHHHhcc-----cCCcE-----EEEeCC-----------------CCHHHHHHhhcCC-----CeeEEEEeCCCCC
Q 009523          252 KTRIFIETVLP-----KMGIT-----ATVIDP-----------------ADMEGLEAALNNN-----NVSLFFTESPTNP  299 (532)
Q Consensus       252 ~t~~~~~~~l~-----~~Gv~-----v~~vd~-----------------~dle~Le~al~~~-----~tklV~lesP~Np  299 (532)
                      +.......+..     ..+..     ...++.                 .|+++|+++++++     ++++|++|+.+|+
T Consensus       191 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~  270 (472)
T 1ohv_A          191 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE  270 (472)
T ss_dssp             CSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred             cccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCC
Confidence            84322211110     11111     111110                 1578899888651     5999999988899


Q ss_pred             CCcccC----HHHHHHHHHhCCCEEEEECCCCCC-Cc---ccccccC----CcEEEECCccc-cCCCCCcEEEEEEeChH
Q 009523          300 FLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LN---QKALSLG----ADLVLHSATKF-IGGHNDVLAGSISGSGK  366 (532)
Q Consensus       300 tG~v~d----l~~I~~la~~~gi~lIvDet~a~~-~~---~~~l~~g----aDivv~S~sK~-lgg~gd~~gG~lv~~~~  366 (532)
                      +|.+.+    +++|.++|++||+++|+||++... ..   ......|    +|++  |++|. ++      ||+++ +++
T Consensus       271 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~~  341 (472)
T 1ohv_A          271 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KEE  341 (472)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-chh
Confidence            999887    999999999999999999997631 11   1111234    6776  57799 55      47766 655


Q ss_pred             HHHHHHHHhhhcCC-CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCC-CCCCchhhhHhhhc
Q 009523          367 LVTQIRNLHHVLGG-ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPG-LKSHPEHHIATQQM  442 (532)
Q Consensus       367 li~~l~~~~~~~G~-~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~~Pg-l~s~p~~~l~~~~~  442 (532)
                      +. .+.... ..+. ..++..+..++..++.+..  ..++..+..+++.+.|++...    .+|. +          ...
T Consensus       342 ~~-~~~~~~-~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~v----------~~~  405 (472)
T 1ohv_A          342 FR-PNAPYR-IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQA----RYPQFI----------SRV  405 (472)
T ss_dssp             GS-CSSSSS-SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH----HCTTTC----------EEE
T ss_pred             hc-cccccc-ccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hCCCcE----------Eee
Confidence            42 111111 1122 3466666666666654432  234444556666666654210    1121 0          001


Q ss_pred             CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHH
Q 009523          443 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLK  522 (532)
Q Consensus       443 ~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli  522 (532)
                      ++.|.+++|++++ ......+.+.|...++.+..+                           ..+.|||++++..+++.+
T Consensus       406 ~~~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~---------------------------g~~~iRi~~~~~~t~e~i  457 (472)
T 1ohv_A          406 RGRGTFCSFDTPD-ESIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPTLVFRDHHA  457 (472)
T ss_dssp             EEETTEEEEECSS-HHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHH
T ss_pred             cCCceEEEEEeCC-hhHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHH
Confidence            2357799998864 234556666664445433221                           146899988875544444


Q ss_pred             HHHHHHH
Q 009523          523 ADVLQAL  529 (532)
Q Consensus       523 ~dL~~AL  529 (532)
                      +.+.++|
T Consensus       458 ~~~~~~l  464 (472)
T 1ohv_A          458 HLFLNIF  464 (472)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.66  E-value=1.1e-14  Score=154.16  Aligned_cols=220  Identities=16%  Similarity=0.084  Sum_probs=134.5

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh-CC----C--cEEEeCCHHHHHHHHHH----HhccCCCEEEEcCCCCcchHHHHHHh
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE-GA----E--STVIMASGMSASTVMLL----ALVPAGGHIVTTTDCYRKTRIFIETV  260 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~-ga----~--~~i~~sSG~~Ai~~al~----all~~Gd~VIv~~~~y~~t~~~~~~~  260 (532)
                      .+.|.  +.....+|+++++++. |.    +  ..+.+.+|+.|+..++.    .++.|||+|++++|+|+.....+   
T Consensus        80 ~~~Y~--p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~---  154 (420)
T 4h51_A           80 DYEYL--PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVV---  154 (420)
T ss_dssp             CCCCC--CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHH---
T ss_pred             CCCCC--CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHH---
Confidence            45565  4455667888888865 32    1  23446677777665554    34579999999999998765444   


Q ss_pred             cccCCcE-EEE---eCC----CCHHHHHHhhc--CCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCC
Q 009523          261 LPKMGIT-ATV---IDP----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  327 (532)
Q Consensus       261 l~~~Gv~-v~~---vd~----~dle~Le~al~--~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a  327 (532)
                       +..|.+ +..   .+.    .|.+.+.+.++  ..+++++++.+|+||||.+.+   +++|+++|+++++++++|++|.
T Consensus       155 -~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~  233 (420)
T 4h51_A          155 -KAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQ  233 (420)
T ss_dssp             -HHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred             -HHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhh
Confidence             334543 322   221    15666666553  226889999999999999987   5688888999999999999986


Q ss_pred             CCCccc----c------ccc-CCcEEEECCccccCCCCCcEEEEEEeChHHHH-------HHHHHhhhcCCCccHHHHHH
Q 009523          328 TPLNQK----A------LSL-GADLVLHSATKFIGGHNDVLAGSISGSGKLVT-------QIRNLHHVLGGALNPNAAYL  389 (532)
Q Consensus       328 ~~~~~~----~------l~~-gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~-------~l~~~~~~~G~~~~~~~a~l  389 (532)
                      ......    .      .+. ..-+++.|+||.++..|.. .|++++..+..+       .+....+......+...+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~  312 (420)
T 4h51_A          234 GYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSER-AGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARL  312 (420)
T ss_dssp             TTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             hhccCCcccchHHHHhHHhhCceEEEEeccccccccccCc-eEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHH
Confidence            543211    1      011 2348889999999877754 666665432222       22222333333444444443


Q ss_pred             HHHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009523          390 IIRGMK----------TLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       390 ~l~~l~----------tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      +...+.          .+....++..+.++.+.+.|++.
T Consensus       313 ~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~  351 (420)
T 4h51_A          313 AHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL  351 (420)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            332222          12222334445666777777764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.61  E-value=2.9e-14  Score=152.14  Aligned_cols=234  Identities=15%  Similarity=0.143  Sum_probs=159.7

Q ss_pred             CchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHh--cccCCcEEEEeCC
Q 009523          199 GNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV--LPKMGITATVIDP  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga-~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~--l~~~Gv~v~~vd~  273 (532)
                      .++...+|++.|+++... +.+.+++||++|+..+++...  ...++||.....|++........  ..........++.
T Consensus       125 ~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~  204 (454)
T 4ao9_A          125 HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY  204 (454)
T ss_dssp             EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT
T ss_pred             CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC
Confidence            356677899999998854 678888999999999997553  23468999899998832110000  0112335566788


Q ss_pred             CCHHHHHHhhcCC--CeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCC----CCcccccccCCcEEE
Q 009523          274 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQKALSLGADLVL  343 (532)
Q Consensus       274 ~dle~Le~al~~~--~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~----~~~~~~l~~gaDivv  343 (532)
                      +|++.+++.++++  ++.+|++|...+..|.+.|    +++|.++|++||+++|+||++..    ...+.....-.|+++
T Consensus       205 nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t  284 (454)
T 4ao9_A          205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT  284 (454)
T ss_dssp             TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE
T ss_pred             chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE
Confidence            8999999988642  5899999999888898887    89999999999999999999742    122233344568887


Q ss_pred             ECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCC--ccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh
Q 009523          344 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA--LNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       344 ~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~--~~~~~a~l~l~~l~tl~--~r~~~~~~~a~~la~~L~~  417 (532)
                        +.|.+||+.  ..|++++++++++.+....  ..++++  .+|..+..++..|+.+.  ...++..++.++|.+.|++
T Consensus       285 --~gK~lggG~--Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          285 --LGKYIGGGM--SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA  360 (454)
T ss_dssp             --EEGGGGTTS--SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --eccccCCCC--cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence              889998753  5788889998887664311  112332  35777777666666542  2334444555666655543


Q ss_pred             ----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          418 ----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       418 ----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                          ++.+..|                  +|.|.|+.+++.
T Consensus       361 l~~~~~~~~~v------------------rg~G~m~gi~f~  383 (454)
T 4ao9_A          361 LCANEGVAMQF------------------TGIGSLMNAHFV  383 (454)
T ss_dssp             HHHHHTBSCEE------------------EEETTEEEEESC
T ss_pred             HHhhCCCCEEE------------------eeeceEEEEEEe
Confidence                3322222                  467889999874

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.61  E-value=5.7e-14  Score=147.28  Aligned_cols=254  Identities=17%  Similarity=0.157  Sum_probs=155.7

Q ss_pred             CCCCCCC--CchhHHHHH----HHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHH-H
Q 009523          192 SFEYGRY--GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-T  259 (532)
Q Consensus       192 ~~~Y~R~--~~p~~~~Le----~~lA~l~ga~~-----~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~-~  259 (532)
                      +|---||  |+..++++|    ++..+++|++.     .+-.-||+.|+..++.++++|||+|+..+..+++....-. .
T Consensus        85 GyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~  164 (490)
T 3ou5_A           85 GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMS  164 (490)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC-------------
T ss_pred             CCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccC
Confidence            4444453  455555554    55667899865     3677899999999999999999999999999887532110 0


Q ss_pred             hccc---CCcEEEE----eCC----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCC--
Q 009523          260 VLPK---MGITATV----IDP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF--  326 (532)
Q Consensus       260 ~l~~---~Gv~v~~----vd~----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~--  326 (532)
                      ...+   .|.-+..    ++.    .|.+++++..++.++|+|++-.-  -..+..|.+++.++|++.|++|++|-++  
T Consensus       165 ~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~S--aY~r~id~~~~reIAd~vGA~Lm~DmAHia  242 (490)
T 3ou5_A          165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS--AYARLIDYARMREVCDEVKAHLLADMAHIS  242 (490)
T ss_dssp             ---------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCS--SCCSCCCHHHHHHHHHHHTCEEEEECGGGH
T ss_pred             CCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCc--cCccccCHHHHHHHHhhcccEEEechhhhh
Confidence            0001   1111111    111    28899999887778999998332  3567789999999999999999999994  


Q ss_pred             ---CCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh---------------HHHHHHHHHh--hhcCCCccHHH
Q 009523          327 ---ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLH--HVLGGALNPNA  386 (532)
Q Consensus       327 ---a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~---------------~li~~l~~~~--~~~G~~~~~~~  386 (532)
                         +.+...+|+++ +|+|+.|.||.|.|+.   ||++..++               ++.+++....  ...|+...-..
T Consensus       243 GLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~I  318 (490)
T 3ou5_A          243 GLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI  318 (490)
T ss_dssp             HHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHH
T ss_pred             hhhcccccCCcccc-ceEEeccccccccCCC---ceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHH
Confidence               34556788887 9999999999999984   89998765               4556665532  22333322222


Q ss_pred             HHHHH---HhH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHH
Q 009523          387 AYLII---RGM-KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTA  459 (532)
Q Consensus       387 a~l~l---~~l-~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~  459 (532)
                      +..+.   ..+ .......++..+|++.|++.|.+.. + ++..-+..+               .++.+.+..   +...
T Consensus       319 AAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G-~-~vvsGgTdn---------------HlvLvDl~~~g~tG~~  381 (490)
T 3ou5_A          319 AAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-Y-SLVSGGTDN---------------HLVLVDLRPKGLDGAR  381 (490)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-C-EEGGGSCSS---------------SEEEEECGGGTCCHHH
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC-C-eeecCCCCc---------------eEEEEeccccCCCHHH
Confidence            22222   112 2345566788899999999998863 3 233333322               367777753   2355


Q ss_pred             HHHHHHHcC
Q 009523          460 TIKFIDALK  468 (532)
Q Consensus       460 ~~~~l~~L~  468 (532)
                      +++.++...
T Consensus       382 ae~~Le~ag  390 (490)
T 3ou5_A          382 AERVLELVS  390 (490)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            666666654

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.60  E-value=9.8e-14  Score=148.41  Aligned_cols=291  Identities=15%  Similarity=0.097  Sum_probs=175.7

Q ss_pred             CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHH-HHHHh---------ccc
Q 009523          199 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRI-FIETV---------LPK  263 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~-~~~~~---------l~~  263 (532)
                      +++...+|.++|+++...   +.+++++||++|+..+++..  .....+||.....|++... .+...         ...
T Consensus       105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p  184 (456)
T 4atq_A          105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP  184 (456)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred             CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence            456667788999998854   45788899999999999743  2345689999999988432 11110         011


Q ss_pred             CCcEEEEeCCC-----------CHHH-------HHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEE
Q 009523          264 MGITATVIDPA-----------DMEG-------LEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC  321 (532)
Q Consensus       264 ~Gv~v~~vd~~-----------dle~-------Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lI  321 (532)
                      ....+..++..           +.+.       +++.+..+++.+|++|......|.+.+    +++|.++|++||+++|
T Consensus       185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI  264 (456)
T 4atq_A          185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFI  264 (456)
T ss_dssp             CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred             ccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceE
Confidence            11233344321           2222       333333346999999999887887765    8999999999999999


Q ss_pred             EECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH
Q 009523          322 IDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  395 (532)
Q Consensus       322 vDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~  395 (532)
                      +||++...      +.+.....-.||++  ++|.+||+.  ..|.+++++++.+.+..........-+|..+..++..++
T Consensus       265 ~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggg~--P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~  340 (456)
T 4atq_A          265 ADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAGGL--PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAID  340 (456)
T ss_dssp             EECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred             ecccccccCCccccccccccCCCCchhh--hhhcccCcC--CceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence            99996431      22344445579998  679988653  567788888877765432221112236787777777777


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------CHHHHHHH
Q 009523          396 TLHLR--VQQQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DLTATIKF  463 (532)
Q Consensus       396 tl~~r--~~~~~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g------~~~~~~~~  463 (532)
                      .+...  +++..+..+++.+.|++    ++.   ..+|.          -...+|.|.|+.|++..      +.+...++
T Consensus       341 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~---~~~~~----------v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v  407 (456)
T 4atq_A          341 TMEQHDLNGRARHIEELALGKLRELAAELSA---GGGSV----------VGDIRGRGAMLAIELVQPGSKEPNAELTKAV  407 (456)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHCC--------C----------EEEEEEETTEEEEEEBCTTSCCBCHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhccc---ccCCc----------eEEeeecceEEEEEEecCCCCCcCHHHHHHH
Confidence            65421  22222333333333332    211   00010          01235678999999953      22445566


Q ss_pred             HHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          464 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       464 l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      ...+...|+-+...                         |...+.|||...+    ++.++.++.|+++|++
T Consensus       408 ~~~~~~~Gvl~~~~-------------------------g~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          408 AAACLKEGVIILTC-------------------------GTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             HHHHHHTTEECEEE-------------------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEec-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            66665444332211                         1224678887543    5667777888888764

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.56  E-value=4.1e-13  Score=142.40  Aligned_cols=218  Identities=11%  Similarity=0.097  Sum_probs=141.7

Q ss_pred             CCCCchhHHH----HHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHhccC----CCEEEEcCCCCcchHHHHHHhcccC
Q 009523          196 GRYGNPTTVV----VEEKMSALEGAES---TVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       196 ~R~~~p~~~~----Le~~lA~l~ga~~---~i~~sSG~~Ai~~al~all~~----Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      ...++|....    +...+.+++|.++   .+++++++.++.+++++.+++    |+.||+++.+|.+...    .+...
T Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~k----Al~l~  164 (450)
T 3bc8_A           89 KAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK----SMVTA  164 (450)
T ss_dssp             SBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH----HHHHT
T ss_pred             cccCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHH----HHHHc
Confidence            3345555444    4556666677643   367766664444455555454    8999999999988664    44456


Q ss_pred             CcEEEEeCC--------CCHHHHHHhhcCCC--eeEEEEeCCC-CCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-
Q 009523          265 GITATVIDP--------ADMEGLEAALNNNN--VSLFFTESPT-NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-  332 (532)
Q Consensus       265 Gv~v~~vd~--------~dle~Le~al~~~~--tklV~lesP~-NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-  332 (532)
                      |+..+++++        .|+++|+++|+++.  .+++++.+|+ +.+|.+.|+++|+++||+||++++||++|+..... 
T Consensus       165 Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~  244 (450)
T 3bc8_A          165 GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC  244 (450)
T ss_dssp             TCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred             CCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhh
Confidence            777777754        28999999996521  3455555665 44678999999999999999999999999875432 


Q ss_pred             -----ccccc-CCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHH--hHHHHHHHHHH
Q 009523          333 -----KALSL-GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQ  403 (532)
Q Consensus       333 -----~~l~~-gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~--~l~tl~~r~~~  403 (532)
                           ..+.. ++|+++.|+||++..+-  .++++.. +++.++.+...........+.+..|..+.  |.+.+...+++
T Consensus       245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~--~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~  322 (450)
T 3bc8_A          245 MHLIQQGARVGRIDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKE  322 (450)
T ss_dssp             HHHHHHHHHHSCCCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcccCCCEEEECCccCCCchh--ccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11233 79999999999998764  3555554 55666655443211122222234444332  33445555666


Q ss_pred             HHHHHHHHHHHHHhCC
Q 009523          404 QNSTALRMAKILEAHP  419 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p  419 (532)
                      ..++++++.+.|++.+
T Consensus       323 ~~~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          323 RKEMFVYLSTQLKKLA  338 (450)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhH
Confidence            6788888888887765

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.53  E-value=8.2e-13  Score=141.84  Aligned_cols=284  Identities=14%  Similarity=0.143  Sum_probs=175.2

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCCcchH-HHHHHh----ccc
Q 009523          199 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTR-IFIETV----LPK  263 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all-------~~G-d~VIv~~~~y~~t~-~~~~~~----l~~  263 (532)
                      .++...+|.++|+++.+.  +.+++++||++|++.+++...       +++ .+||.....|++.. ..+...    -+.
T Consensus       109 ~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~  188 (473)
T 4e3q_A          109 MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSV  188 (473)
T ss_dssp             EEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGG
T ss_pred             cCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccc
Confidence            456677888999999864  578899999999999997542       133 47888888888832 211110    011


Q ss_pred             CC---cEEEEeCCC------------------CHHHHHHhhc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009523          264 MG---ITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  315 (532)
Q Consensus       264 ~G---v~v~~vd~~------------------dle~Le~al~---~~~tklV~lesP~NptG~v~d----l~~I~~la~~  315 (532)
                      ++   .....++..                  ..+++++.+.   .+++.+|++|......|.+.+    +++|.++|++
T Consensus       189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~  268 (473)
T 4e3q_A          189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK  268 (473)
T ss_dssp             GTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             cCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc
Confidence            11   112222211                  1234455443   225899999999887887765    8999999999


Q ss_pred             CCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh-----hcCCC--c
Q 009523          316 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-----VLGGA--L  382 (532)
Q Consensus       316 ~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~-----~~G~~--~  382 (532)
                      ||+++|.||++...      +.+.....-.|+++  +.|.++++. ...|++++++++.+.+.....     .+|.+  -
T Consensus       269 ~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~-~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~G  345 (473)
T 4e3q_A          269 YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGF-FPMGAVILGPELSKRLETAIEAIEEFPHGFTASG  345 (473)
T ss_dssp             TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTT
T ss_pred             cceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCC-CCcccccccHHHHHHhccccccccccccCCCCCC
Confidence            99999999996432      22333445579998  789998764 356788889998887754321     12322  3


Q ss_pred             cHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh---CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-
Q 009523          383 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-  456 (532)
Q Consensus       383 ~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~---~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-  456 (532)
                      +|..+..++..++.+..  .+++..+...++.+.|++   +|.|..|                  +|.|.|+.+++..+ 
T Consensus       346 npla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v------------------RG~Gl~~gielv~~~  407 (473)
T 4e3q_A          346 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY------------------RGIGFMWALEAVKDK  407 (473)
T ss_dssp             CHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEECSBT
T ss_pred             CcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEE------------------eecceEEEEEEecCc
Confidence            67888777777776542  123333444555555543   3333333                  56788999998421 


Q ss_pred             ---------HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHH
Q 009523          457 ---------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS----FGVEDFEDLKA  523 (532)
Q Consensus       457 ---------~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS----vG~ed~~dli~  523 (532)
                               .....++...+...++-+.          |.                  .+.|||+    +..++.+++++
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~Gll~~----------~~------------------g~~i~l~PPL~it~~eid~~~~  459 (473)
T 4e3q_A          408 ASKTPFDGNLSVSERIANTCTDLGLICR----------PL------------------GQSVVLCPPFILTEAQMDEMFD  459 (473)
T ss_dssp             TTTBCCCGGGCHHHHHHHHHHHTTEECE----------EE------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHCCcEEE----------ec------------------CCEEEEeCCCCCCHHHHHHHHH
Confidence                     1223445555443333221          10                  2456665    33466788888


Q ss_pred             HHHHHHhh
Q 009523          524 DVLQALHA  531 (532)
Q Consensus       524 dL~~AL~~  531 (532)
                      .|+++|++
T Consensus       460 ~l~~al~~  467 (473)
T 4e3q_A          460 KLEKALDK  467 (473)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888864

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.51  E-value=2.3e-13  Score=143.25  Aligned_cols=194  Identities=9%  Similarity=0.095  Sum_probs=130.9

Q ss_pred             EEEeCCHHHHHHHHHHHhccC----CCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC--------CCHHHHHHhhcCC
Q 009523          219 TVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNN  286 (532)
Q Consensus       219 ~i~~sSG~~Ai~~al~all~~----Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~--------~dle~Le~al~~~  286 (532)
                      .+++++++.++.+++++.+++    ||.||+++.+|.+.+..    +...|++.+++++        .|+++++++|+++
T Consensus       137 ~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kA----liL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~  212 (501)
T 3hl2_A          137 CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MITAGFEPVVIENVLEGDELRTDLKAVEAKVQEL  212 (501)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEECEEEETTEEEECHHHHHHHHHHH
T ss_pred             EEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHH----HHHcCCeEEEEeeeecccccCCCHHHHHHHHHhc
Confidence            456666666677767666664    49999999999986643    3445777777764        2789999999653


Q ss_pred             ---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc------cccccC-CcEEEECCccccCCCCCc
Q 009523          287 ---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSLG-ADLVLHSATKFIGGHNDV  356 (532)
Q Consensus       287 ---~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~------~~l~~g-aDivv~S~sK~lgg~gd~  356 (532)
                         .+.+|+.++++|..+.+.|+++|+++||+||++++|||+|+..+..      ..+..| +|+++.|.||.+--+-  
T Consensus       213 ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpI--  290 (501)
T 3hl2_A          213 GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV--  290 (501)
T ss_dssp             CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCS--
T ss_pred             CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeec--
Confidence               2344555444554557789999999999999999999999876521      234568 9999999999986552  


Q ss_pred             EEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009523          357 LAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       357 ~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l--~~l~tl~~r~~~~~~~a~~la~~L~~~  418 (532)
                      .||++.. ++++++++.......-...+....|+++  -|.+.+...+++..++++++.+.|++.
T Consensus       291 GG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l  355 (501)
T 3hl2_A          291 GGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL  355 (501)
T ss_dssp             SCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344434 5567776643221001112223345443  344556667778888888988888774

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.47  E-value=3.9e-13  Score=153.57  Aligned_cols=286  Identities=13%  Similarity=0.121  Sum_probs=172.9

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHhc-----cCC------------CEEEEcCCCCcch-HH
Q 009523          197 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-----PAG------------GHIVTTTDCYRKT-RI  255 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~g---a~~~i~~sSG~~Ai~~al~all-----~~G------------d~VIv~~~~y~~t-~~  255 (532)
                      .+.++...+|.++|+++.+   .+.+++++||++|++.+++..+     +.|            .+||..+..|++. ..
T Consensus       420 ~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~g  499 (831)
T 4a0g_A          420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLG  499 (831)
T ss_dssp             TEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHH
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCcee
Confidence            3457778899999999987   3578999999999999987652     122            3688888888873 32


Q ss_pred             HHHHhc----c---------cCCc-------------EEEEeCC------------CC------------------HHHH
Q 009523          256 FIETVL----P---------KMGI-------------TATVIDP------------AD------------------MEGL  279 (532)
Q Consensus       256 ~~~~~l----~---------~~Gv-------------~v~~vd~------------~d------------------le~L  279 (532)
                      .+...-    .         ..+.             .....+.            .+                  .++|
T Consensus       500 als~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  579 (831)
T 4a0g_A          500 AMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYL  579 (831)
T ss_dssp             HHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHH
T ss_pred             eeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHH
Confidence            222110    0         0000             0011110            12                  2567


Q ss_pred             HHhhc-------CCCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------CcccccccCCcE
Q 009523          280 EAALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADL  341 (532)
Q Consensus       280 e~al~-------~~~tklV~lesP-~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------~~~~~l~~gaDi  341 (532)
                      ++.++       ..++.+|++|.. .+..|.+.+    +++|.++|++||+++|+||++...      +.......-.|+
T Consensus       580 e~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi  659 (831)
T 4a0g_A          580 SKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDI  659 (831)
T ss_dssp             HHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSE
T ss_pred             HHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcE
Confidence            77775       235899999997 788887765    899999999999999999986431      112223344688


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh----hcC--CCccHHHHHHHHHhHHHHHHH--HHHHHHH------
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----VLG--GALNPNAAYLIIRGMKTLHLR--VQQQNST------  407 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~----~~G--~~~~~~~a~l~l~~l~tl~~r--~~~~~~~------  407 (532)
                      ++  ++|.++++ -+..|++++++++++.+.....    .+|  ...+|..+..++..++.+...  .++..++      
T Consensus       660 it--lsK~L~gG-~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~  736 (831)
T 4a0g_A          660 AC--FAKLLTGG-MVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRE  736 (831)
T ss_dssp             EE--ECGGGGTT-SSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCC
T ss_pred             EE--EecccccC-ccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            75  88999873 2356888999998887643210    122  234688887777777655310  0011011      


Q ss_pred             --HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-------HHHHHHHHHcCCCceeecCCC
Q 009523          408 --ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-------TATIKFIDALKIPYIAPSFGG  478 (532)
Q Consensus       408 --a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-------~~~~~~l~~L~~~~i~vs~G~  478 (532)
                        .+.+.+.+.++|.|..|                  ++.|.|+.+++..+.       ..+..+...+...|+.+..  
T Consensus       737 ~l~~~l~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p--  796 (831)
T 4a0g_A          737 LWDEELVQQISSHSAVQRV------------------VVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP--  796 (831)
T ss_dssp             CSCHHHHHHHHHSTTEEEE------------------EEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCC--
T ss_pred             HHHHHHHHHHhhCCCceeE------------------eecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe--
Confidence              11233445556655444                  346889999986421       2345566665544543321  


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                              .                  .+.|||+...    ++.+++++.|.++|++
T Consensus       797 --------~------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          797 --------L------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             --------B------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             --------c------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                    1                  3689998554    4455566666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	532
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	1e-119
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	1e-110
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	1e-103
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	3e-95
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	4e-92
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	5e-84
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	8e-84
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	2e-82
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	2e-76
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	8e-69
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	2e-28
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	2e-10
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-07
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	2e-06
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-06
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	4e-06
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	3e-04
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	0.002

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  354 bits (910), Expect = e-119
 Identities = 346/395 (87%), Positives = 375/395 (94%)

Query: 138 ASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGR 197
           ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGR
Sbjct: 4   ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGR 63

Query: 198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI 257
           YGNPTTVV+EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFI
Sbjct: 64  YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI 123

Query: 258 ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 317
           ET+LPKMGITATVIDPAD+  LE ALN   V+LFFTESPTNPFLRCVD++LVS LCH+KG
Sbjct: 124 ETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKG 183

Query: 318 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV 377
           A+VCIDGTFATPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG  KLV++IRNLHH+
Sbjct: 184 ALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI 243

Query: 378 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 437
           LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA+ILEAHPKV+ V+YPGL+SHPEHHI
Sbjct: 244 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI 303

Query: 438 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS 497
           A +QMTGFGG VSFEVDGDL  T KF+DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS
Sbjct: 304 AKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS 363

Query: 498 ERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           +R KYGIMDNLVRFSFGVEDF+DLKAD+LQAL +I
Sbjct: 364 DRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 398

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  332 bits (851), Expect = e-110
 Identities = 145/387 (37%), Positives = 231/387 (59%), Gaps = 5/387 (1%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
             +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +
Sbjct: 11  QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 68

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           E+K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI
Sbjct: 69  EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 128

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +D    E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF
Sbjct: 129 NVRFVDAGKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 187

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 384
            +P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P
Sbjct: 188 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 247

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
             A+L +RG+KTL +R+++    AL++A+ LE HP + RV+YPGL SHP++ +  +QM+ 
Sbjct: 248 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSL 307

Query: 445 FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
            GG++SFE+ G L A  + I+++++  +A S G  E+++  PA M++  ++  ERLK GI
Sbjct: 308 PGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGI 367

Query: 505 MDNLVRFSFGVEDFEDLKADVLQALHA 531
            D L+R S G+ED ED+  D+  A+  
Sbjct: 368 TDGLIRLSVGLEDPEDIINDLEHAIRK 394

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  314 bits (804), Expect = e-103
 Identities = 146/387 (37%), Positives = 221/387 (57%), Gaps = 5/387 (1%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
            AIH G          A+  PV  T+ + F             +A   Y R  NPT  ++
Sbjct: 7   RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 64

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+
Sbjct: 65  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 124

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +D AD++ LEAA+      + + ESP NP +   D+  V+ +  K GA V +D T+
Sbjct: 125 KLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 183

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNP 384
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +I  + L  + G  L+P
Sbjct: 184 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 243

Query: 385 NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 444
           + A L++RG+KTL+LR+ +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+ 
Sbjct: 244 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 303

Query: 445 FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 504
            GG+++FE+ G + A  +F++AL++   A S G  ES+   PA M++   +  ER  YGI
Sbjct: 304 PGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGI 363

Query: 505 MDNLVRFSFGVEDFEDLKADVLQALHA 531
            + LVR S G+ED +DL ADV QAL A
Sbjct: 364 SEGLVRLSVGLEDIDDLLADVQQALKA 390

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  294 bits (752), Expect = 3e-95
 Identities = 125/418 (29%), Positives = 199/418 (47%), Gaps = 36/418 (8%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 205
           +L +HAG        T +   P+  T++Y FK      +    +     Y R  NPT  V
Sbjct: 5   TLQLHAGYE--PEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62

Query: 206 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 265
           +E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L ++G
Sbjct: 63  LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122

Query: 266 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 325
           I        +      AL +     ++ ES  NP L   D++ ++    +KG  + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182

Query: 326 FAT-PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 375
           F       + L+ GA LV HS TK++GGH  V+AG+I   G          L+T+ +  +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242

Query: 376 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 412
           H L                       G AL P  A++++ GM+TL LR ++     L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302

Query: 413 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEVDGDLTATIKFIDALKIPY 471
             L   P+V  V+YPGL  HP H  A +   G  G V++F + G   A  +FI  LK+  
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLIS 362

Query: 472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 529
              + G   ++   PA  ++  LS  E+ + G+   +VR S G+E  EDLKA++ +AL
Sbjct: 363 HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  285 bits (729), Expect = 4e-92
 Identities = 125/392 (31%), Positives = 210/392 (53%), Gaps = 5/392 (1%)

Query: 143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPT 202
           +  +  IHA  +  +     A   P+  TS + F    +  +    + + + Y R GNPT
Sbjct: 4   TPATACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPT 60

Query: 203 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 262
              +E K++ LE  E+ V  +SGM A    +L ++ AG H+++    Y  T    E  L 
Sbjct: 61  VSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALT 120

Query: 263 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 322
           K GI    I+ A    ++  +  N   ++F              ++  D   ++G +V  
Sbjct: 121 KFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIA 180

Query: 323 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGG 380
           D TF +P+    +  G D+V+HSATK+I GH DV+AG I G   L+ QIR   +  + G 
Sbjct: 181 DNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240

Query: 381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 440
            ++P+ A+LI RG+ TL++R++ ++  A+++A+ L++HP V++V+YPG + H  H IA +
Sbjct: 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKK 300

Query: 441 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 500
           QM  +G +++F +        K +D LK+  +A S GGCES++  PA M++  + + ER 
Sbjct: 301 QMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEERE 360

Query: 501 KYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             GI D ++R S G+ED ++L AD  Q L A+
Sbjct: 361 AAGITDGMIRLSVGIEDADELIADFKQGLDAL 392

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  263 bits (673), Expect = 5e-84
 Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 15/392 (3%)

Query: 142 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 201
           +S  +L ++   +       DA++TP+  T+ +      E           ++Y R GNP
Sbjct: 1   ASVSTLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGPYDYTRSGNP 49

Query: 202 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 261
           T   +E  ++ L+ A+      SGM+A +  +  L+  G  IV   D Y  +   +  V+
Sbjct: 50  TRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVV 108

Query: 262 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 321
           P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++ H +GA+V 
Sbjct: 109 PRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 167

Query: 322 IDGTFATPLNQKALSLGADLVLHSATKFIGGHND-VLAGSISGSGKLVTQIRNLHHVLGG 380
           +D +  +P+  + L LGAD+V+HSATKFI GH+D +         KL  ++  L +  G 
Sbjct: 168 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS 227

Query: 381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 440
            L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   
Sbjct: 228 GLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHL-HF 286

Query: 441 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 500
                 G V   + G +  +   ++  K   IA SFG  +S++  P  MS+  +    R 
Sbjct: 287 SQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVRE 346

Query: 501 KYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
             G+ ++LVR S G+ED +DL +D+  A    
Sbjct: 347 ARGLTEDLVRISAGIEDVDDLISDLDIAFKTF 378

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  263 bits (672), Expect = 8e-84
 Identities = 125/386 (32%), Positives = 199/386 (51%), Gaps = 12/386 (3%)

Query: 147 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 206
           +A+ +G           +  P+  +S Y F    E          + +Y R GNPT  VV
Sbjct: 6   IAVRSGLN--DDEQYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRDVV 55

Query: 207 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 266
           +  ++ LEG    V+  +GMSA  ++    +  G  +V   DCY  +    +++  +   
Sbjct: 56  QRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 115

Query: 267 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 326
               +D  D + L AA       L   ESP+NP LR VD+  +  L  + GA+  +D TF
Sbjct: 116 RVLFVDQGDEQALRAA-LAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 174

Query: 327 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPN 385
            +P  Q  L+LGADLVLHS TK++ GH+DV+AG +      +VT++    + +G      
Sbjct: 175 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAF 234

Query: 386 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 445
            +YL++RG++TL  R++     A  + K L+  P VK++++P L  +  H IA +Q  GF
Sbjct: 235 DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGF 294

Query: 446 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 505
           G ++SFE+DGD     +F+  L +  +A S GG ES++   A M++  ++   R   GI 
Sbjct: 295 GAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGIS 354

Query: 506 DNLVRFSFGVEDFEDLKADVLQALHA 531
           + L+R S G+ED EDL AD+     A
Sbjct: 355 ETLLRISTGIEDGEDLIADLENGFRA 380

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  259 bits (663), Expect = 2e-82
 Identities = 127/395 (32%), Positives = 206/395 (52%), Gaps = 21/395 (5%)

Query: 145 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 204
            + AIHAGE +       ++  P+  ++ +     A  I        ++EY R  NP   
Sbjct: 9   ATKAIHAGEHVDV---HGSVIEPISLSTTFKQSSPANPIG-------TYEYSRSQNPNRE 58

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +E  ++ALE A+  +  +SG +  T  +L  +P G H V+  D Y  T  +   V    
Sbjct: 59  NLERAVAALENAQYGLAFSSGSAT-TATILQSLPQGSHAVSIGDVYGGTHRYFTKVA-NA 116

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV----KLVSDLCHKKGAIV 320
               T      +  L   +  N   L + E+PTNP L+  D+     L+      +  I+
Sbjct: 117 HGVETSFTNDLLNDLPQLIKENT-KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175

Query: 321 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLG 379
            +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235

Query: 380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIA 438
              +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A    V  V+YPGLK+HP + + 
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295

Query: 439 --TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ 496
               +    GG++SF + G   A  KF  + ++  +A S GG ES+++ PA+M++  + +
Sbjct: 296 LKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPK 355

Query: 497 SERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 531
             R   G+ D+LVR S G+ED +DL  D+ QAL  
Sbjct: 356 EAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  242 bits (617), Expect = 2e-76
 Identities = 114/330 (34%), Positives = 177/330 (53%), Gaps = 3/330 (0%)

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 324
           G+    ID A    +E  L  N   ++F                V     +K  +V +D 
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 325 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGAL 382
           TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ ++  + +  + G  +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 383 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 442
           +P+ A+LI RG  TL +RV++    A ++A+ L  H  VK+V+YPGL  HP H IA +QM
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

Query: 443 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 502
             FG +++F+VDG L    K +D   +  +A S GG ES++  PA M++  + + ER   
Sbjct: 242 KMFGSMIAFDVDG-LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAA 300

Query: 503 GIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
           G+ DNL+R S G E+ +D+  D+ QAL  +
Sbjct: 301 GLTDNLIRLSVGCENVQDIIDDLKQALDLV 330

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  224 bits (571), Expect = 8e-69
 Identities = 97/391 (24%), Positives = 179/391 (45%), Gaps = 8/391 (2%)

Query: 146 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTV 204
           +  ++AG    +     A+ + +   S+  F          + +      YGR G  T  
Sbjct: 4   TQLVNAGRS--KKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHF 61

Query: 205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 264
            +++ M  LEG    V+   G +A    +LA +  G H++ T   Y  ++ F   +L K+
Sbjct: 62  SLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL 121

Query: 265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKLVSDLCHKKGAIVCID 323
           G+T +  DP     +   L  N   +F     +    +  V   + +       AI+ ID
Sbjct: 122 GVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID 181

Query: 324 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN 383
            T+A  +  KAL  G D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++
Sbjct: 182 NTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVD 241

Query: 384 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 443
            + AY+  RG++TL +R++Q + ++L++A+ L  HP+V RV++P L     H    +  T
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT 301

Query: 444 GFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 501
           G  G+ SF +   L       ++D   +  +A S+GG ES++          +     + 
Sbjct: 302 GSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEI- 360

Query: 502 YGIMDNLVRFSFGVEDFEDLKADVLQALHAI 532
                 L+R   G+ED +DL AD+      I
Sbjct: 361 -DFSGTLIRLHIGLEDVDDLIADLDAGFARI 390

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  114 bits (285), Expect = 2e-28
 Identities = 47/326 (14%), Positives = 94/326 (28%), Gaps = 23/326 (7%)

Query: 197 RYGNPTTVVVEEKMSAL-----EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR 251
            Y   +    +     L     +  +  V      SA    +LAL P             
Sbjct: 44  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 103

Query: 252 KTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 311
            +            + A   +   +  +   ++ + + +    +     +   + K V +
Sbjct: 104 PSIERS-----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVIN 158

Query: 312 LCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 366
               K AIV +D      +        AL LGADLV+ S  K + G    L   ++G  +
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL---LAGKKE 215

Query: 367 LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRMAKILEAHPKVKRVH 425
           LV +I       G    P     I R +K  +L R+++    A             +   
Sbjct: 216 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA 275

Query: 426 YPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYI-APSF-GGCESI 482
                +       T  +        +  +   +      +    I  I      G  +S+
Sbjct: 276 IDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSL 335

Query: 483 VDQPAIMSYWDLSQSERLKYGIMDNL 508
                      +     +   I++++
Sbjct: 336 RIDLTSRDAERIDD-NYIIKAIVESI 360

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 45/311 (14%), Positives = 97/311 (31%), Gaps = 21/311 (6%)

Query: 129 EALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK 188
           +    LK  +   +     ++  GER  R   +            +   ++  L+D + K
Sbjct: 47  KIKLFLKFLSMMDTDKDPKSVRIGEREAR-TYSKIHEELSSGF-CHGIGRSGNLVDPQPK 104

Query: 189 RRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVML-LALVPAGGHIVTTT 247
              +       N   +    K   L        +++GMS S  +           ++   
Sbjct: 105 ASGASIMYALTNKI-LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPY 163

Query: 248 DCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNN----NVSLFFTESPTNP 299
             ++     +  V   M +  TV+D       +E +E A+       N     +     P
Sbjct: 164 ASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFP 223

Query: 300 FLRCVDVKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGH 353
                D+  ++ +C        I+G +A          +KA     D V+ S+ K +   
Sbjct: 224 PRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP 283

Query: 354 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRM 411
                   S   + + +I   +     A       + +  M + +    V+ Q ++   +
Sbjct: 284 IGG-GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLL 342

Query: 412 AKILEAHPKVK 422
            ++L    K  
Sbjct: 343 DELLNDLSKKT 353

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 28/284 (9%), Positives = 71/284 (25%), Gaps = 44/284 (15%)

Query: 195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 254
           Y   G+     +E+ +  L G +  V    G  A  ++    +  G ++         TR
Sbjct: 71  YA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TR 127

Query: 255 IFIET-------VLPKMGITATVIDPA----DMEGLEAALNNNN-------VSLFFTESP 296
              E        ++      A++  P     D+  L   +                    
Sbjct: 128 FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLA 187

Query: 297 TNPFLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSATKFIGGH 353
               +   +++ V ++    G  +  D T         ++  +   ++ +      +  +
Sbjct: 188 GGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY 247

Query: 354 NDVLAGS-------------ISGSGKLVTQIRNL-----HHVLGGALNPNAAYLIIRGMK 395
            D    S                  ++ +  + L          G L       +  G++
Sbjct: 248 ADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLR 307

Query: 396 TLHLR--VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 437
                  ++ +      +   L            G     +   
Sbjct: 308 EAMQYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARR 351

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 37/292 (12%), Positives = 86/292 (29%), Gaps = 15/292 (5%)

Query: 199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 258
             P    +  ++    G +   +      A   ++ +L      +V   +C+  + +  E
Sbjct: 45  TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE 104

Query: 259 TVLPKMGITATVIDPADMEGLEA-------ALNNNNVSLFFTESPTNPFLRCVDVKLVSD 311
                + +      P      E              V L     P   +    DVK ++ 
Sbjct: 105 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 164

Query: 312 LCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 370
           +C +    + ++G +A   +      +GAD ++ S  K +     +  G +    +    
Sbjct: 165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI--GVMGMKEEWAEI 222

Query: 371 IRNLHHVLGGALNPN-----AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 425
           +                       II  M +     ++       + K      +++++ 
Sbjct: 223 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG 282

Query: 426 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 477
              L  +P +H            +S +  G      + + + KI  I P   
Sbjct: 283 IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLT 334

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 34/318 (10%), Positives = 76/318 (23%), Gaps = 48/318 (15%)

Query: 195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG--------GHIVTT 246
           +   G+ +   + E +  + G + T+    G  A  + +  L+             +V  
Sbjct: 70  FS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAF 127

Query: 247 TDCYRKTRIFIETV---------------LPKMGITATVIDPADMEGLEAALNNNNVSLF 291
           ++ +  T      +                          D   +E     +  NNV   
Sbjct: 128 SNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187

Query: 292 FTESPTN----PFLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLH 344
                +N      +   ++K +  +  K    V +D           ++  +   D  + 
Sbjct: 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE 247

Query: 345 SATKFIGGHNDVLAGSISGSG----------------KLVTQIRNLHHVLGGALNPNAAY 388
             T+    + D+LA S                      + T+ R L  V  G        
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLE 307

Query: 389 LIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGV 448
                   + L               ++             +    H            +
Sbjct: 308 GGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHI 367

Query: 449 VSFEVDGDLTATIKFIDA 466
            + +      A   +  A
Sbjct: 368 PADQFPAQALACELYKVA 385

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 46/344 (13%), Positives = 96/344 (27%), Gaps = 38/344 (11%)

Query: 122 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-- 179
           G     LE    L   A   S++       GER GR      + + +V    Y F     
Sbjct: 23  GWDESTLELF--LHELAVMDSNNFLGNCGVGEREGR------VASALVARRHYRFIHGIG 74

Query: 180 --AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL- 236
              ++   + K   S    +  N   + V +       A   V+  +   + T+  L L 
Sbjct: 75  RSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 134

Query: 237 --VPAGGHIVTTTDCYR----------KTRIFIETVLPKMGITATVIDPADMEGLEAALN 284
              P   +I+      +             + IE VL          D   +E     L 
Sbjct: 135 HKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD---ELRTDLKAVEAKIQELG 191

Query: 285 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT------FATPLNQKALSLG 338
             ++    + +          ++ ++ +C        ++            L Q+   +G
Sbjct: 192 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251

Query: 339 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMK 395
             D  + S  K         A     +   +  I  ++     A       + +   G  
Sbjct: 252 RIDAFVQSLDKNFMVPVGG-AIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCS 310

Query: 396 TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 439
                ++++    + ++  L+   +           +P     T
Sbjct: 311 GYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMT 354

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 189 RRASFEYGRYGN-PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT 247
            +A      YG  PT   +E   +   G E+ + + SG   + V ++A    G  ++   
Sbjct: 21  AQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEA 80

Query: 248 DCY 250
           D +
Sbjct: 81  DSH 83

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 20/199 (10%), Positives = 47/199 (23%), Gaps = 30/199 (15%)

Query: 195 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------------- 240
           Y   G+     +++K   L   +  +    G  A  ++   L+                 
Sbjct: 71  YA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN 128

Query: 241 -------GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 293
                   H+                            D   ++   A    +N+    +
Sbjct: 129 FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVS 188

Query: 294 ESPTNP----FLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSA 346
               N      +   ++K V ++  + G  V +D           +       +  +   
Sbjct: 189 TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEV 248

Query: 347 TKFIGGHNDVLAGSISGSG 365
              +  + D L  S     
Sbjct: 249 IFDMYKYADALTMSAKKDP 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	532
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.94
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.94
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.94
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.94
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.93
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.93
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.93
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.92
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.92
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.92
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.91
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.9
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.9
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.9
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.89
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.89
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.89
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.89
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.89
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.88
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.88
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.88
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.88
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.87
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.87
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.86
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.86
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.86
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.86
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.85
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.83
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.82
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.82
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.82
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.82
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.8
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.79
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.78
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.77
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.77
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.75
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.73
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.73
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.73
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.73
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.72
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.71
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.7
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.68
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.68
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.67
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.67
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.65
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.65
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.65
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.64
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.64
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.61
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.61
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.6
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.57
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.56
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.54
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.53
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.49
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.49
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.46
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.45
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.44
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.33
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.33
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.33
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.27
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.26
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.31

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.1e-82  Score=662.28  Aligned_cols=396  Identities=87%  Similarity=1.314  Sum_probs=380.3

Q ss_pred             hhcccCCCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhC
Q 009523          136 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG  215 (532)
Q Consensus       136 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~g  215 (532)
                      +|.+|++...|++||+|...+++..+++++||||+||||.|++.+++.+.+.++..+|.|+|.+||+++.||++||+++|
T Consensus         2 ~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEg   81 (398)
T d1qgna_           2 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG   81 (398)
T ss_dssp             CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred             CccccCCCCccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhC
Confidence            57899999999999999876555568999999999999999999999999988889999999999999999999999999


Q ss_pred             CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHh-hcCCCeeEEEEe
Q 009523          216 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA-LNNNNVSLFFTE  294 (532)
Q Consensus       216 a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~a-l~~~~tklV~le  294 (532)
                      ++.+++++|||+|+..++.+++++||+||+++..|++++.++...++++|+++.+++..+.++.++. +++ +|++||+|
T Consensus        82 g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~t~~v~~E  160 (398)
T d1qgna_          82 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE  160 (398)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred             CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccc-cceEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999998777766654 455 79999999


Q ss_pred             CCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHH
Q 009523          295 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL  374 (532)
Q Consensus       295 sP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~  374 (532)
                      +|+||++.+.|+++|+++||++|+++|||+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++++..++..
T Consensus       161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~  240 (398)
T d1qgna_         161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL  240 (398)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred             CccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009523          375 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD  454 (532)
Q Consensus       375 ~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~  454 (532)
                      +..+|..++|+++|+++++++|+..||+++++|+..+++||++||.|.+|+||+|++||+|+++++|+.|+|++++|+++
T Consensus       241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~  320 (398)
T d1qgna_         241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD  320 (398)
T ss_dssp             HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred             cccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          455 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       455 g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      ++.+.+.+|+++|+++.+++|||+++|++++|++++|..++++++...|+++++||||||+||++|||+||++||++|
T Consensus       321 g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         321 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHhcC
Confidence            888899999999999999999999999999999999999999999999999999999999999999999999999976

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=1.4e-81  Score=655.09  Aligned_cols=386  Identities=38%  Similarity=0.662  Sum_probs=371.1

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +|+|++||+|+.++  ..+++++||||+||||.|++.+++.+.+.++..+|.|+|.+||++..||++||+++|++.++++
T Consensus         7 ~f~T~~ih~G~~~~--~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~   84 (397)
T d1y4ia1           7 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT   84 (397)
T ss_dssp             CHHHHHHHTTCCCC--TTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEeCCCCCC--CCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCccceee
Confidence            48999999997653  4579999999999999999999999999888889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+.+++.+++++||+||+++..|++++.++...++++|++++++|..|++++++++++ +||+||+|+|+||++.
T Consensus        85 sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~-~Tklv~~Esp~NP~l~  163 (397)
T d1y4ia1          85 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRP-ETKVVYIETPANPTLS  163 (397)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             hHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCC-CCcEEEecCCccccee
Confidence            999999999999999999999999999999999998889999999999999999999999988 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHH--HHhhhcCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG  380 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~--~~~~~~G~  380 (532)
                      +.|+++|+++||++|++++||+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+.+++  ..+...|.
T Consensus       164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~  243 (397)
T d1y4ia1         164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  243 (397)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998887654  45667899


Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          381 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       381 ~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      .++|+++|+++|+++|+..||+++.+|+.++++||++||.|.+|+||++++||+|+++++|+.++|+|++|+++++.+.+
T Consensus       244 ~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~  323 (397)
T d1y4ia1         244 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAG  323 (397)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred             cCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877788


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .+|+++|+++.+++|||+++||+++|+.++|..+++++++..|+++++||||||+||++|||+||++||++
T Consensus       324 ~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         324 RRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK  394 (397)
T ss_dssp             HHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.8e-81  Score=654.05  Aligned_cols=388  Identities=38%  Similarity=0.602  Sum_probs=336.9

Q ss_pred             CCCccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEE
Q 009523          141 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  220 (532)
Q Consensus       141 ~~~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i  220 (532)
                      |.+|+|++||+|..++  ..+++++||||+||||.|++.+++.+.+.++..+|.|+|.+||+++.||++||+++|++.++
T Consensus         1 ~~g~~T~~vH~G~~~~--~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~   78 (392)
T d1gc0a_           1 LPGFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL   78 (392)
T ss_dssp             CCCHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcCcchhceeCCCCCC--CCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCccee
Confidence            4578999999997653  45789999999999999999999988888888899999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCC
Q 009523          221 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  300 (532)
Q Consensus       221 ~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~Npt  300 (532)
                      +++|||+|+.+++.+++++||+||+++..|++++.+++..++++|+++.++|..|++++++++++ +|++||+|+|+||+
T Consensus        79 ~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~-~t~lv~~Esp~NP~  157 (392)
T d1gc0a_          79 ALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPN  157 (392)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred             ehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCC-CCeEEEecccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999998 79999999999999


Q ss_pred             CcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHH--HHhhhc
Q 009523          301 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVL  378 (532)
Q Consensus       301 G~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~--~~~~~~  378 (532)
                      +.+.|+++|+++||++|++++||+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+.+++  ..+..+
T Consensus       158 l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~  237 (392)
T d1gc0a_         158 MHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMT  237 (392)
T ss_dssp             CCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHT
T ss_pred             eeecchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999999999998887654  456678


Q ss_pred             CCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH
Q 009523          379 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT  458 (532)
Q Consensus       379 G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~  458 (532)
                      |+.++|+++|+++++++|+..||+++.+|+++++++|++||.|++|+||++++||+|+++++++.++|++++|+++++.+
T Consensus       238 G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~  317 (392)
T d1gc0a_         238 GAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIG  317 (392)
T ss_dssp             CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHH
T ss_pred             CCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998778


Q ss_pred             HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          459 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       459 ~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .+.+|++.|+++.+++|||+++|++++|++++|..++++++..+|+++++||||||+||++|||+||++||++
T Consensus       318 ~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         318 AGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA  390 (392)
T ss_dssp             HHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeCCHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999975

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-79  Score=634.04  Aligned_cols=378  Identities=33%  Similarity=0.556  Sum_probs=361.4

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|++||+|...+  ..+++++||||+||||.|++.++        ..+|.|+|.+||+++.||++||+++|++.+++|
T Consensus         2 k~~T~~vh~G~~~~--~~~gav~pPI~~sst~~~~~~~~--------~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~   71 (384)
T d1cs1a_           2 KQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFNE--------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT   71 (384)
T ss_dssp             CHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTTB--------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             ChhhheeeCCCCCC--CCCCCccCCccCCCCeecCCCCc--------ccCCcccCCCCHHHHHHHHHHHHHhCCCceEEe
Confidence            57899999998763  45899999999999999997642        357999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+..++.+++++||+|++++..|++++.++...+++.|+++.+++..|.+++++++++ +|++||+|+|+||++.
T Consensus        72 sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~-~t~~v~~EspsNP~l~  150 (384)
T d1cs1a_          72 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLR  150 (384)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCC
T ss_pred             cChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccc-cccEEEEeccccccce
Confidence            999999999999999999999999999999999999899999999999999999999999988 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|+++||++|+++||||||++|+.++|+++|+|||++|+|||++||+|+++|+++++. ++.+.++..+..+|..
T Consensus       151 v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~  230 (384)
T d1cs1a_         151 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT  230 (384)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred             eccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999988854 6667888888889999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++|+++|+++++++|+..||+++.+|++.+++||++||.|.+|+||++++||+|+++++|+.|+|++++|+++++.+.+.
T Consensus       231 ~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~  310 (384)
T d1cs1a_         231 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLR  310 (384)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHH
T ss_pred             cccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      +|+++|+++.+++|||+.+||+++|++++|..++++.+...|+++++||||||+||++|||+||++||++
T Consensus       311 ~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~a  380 (384)
T d1cs1a_         311 RFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA  380 (384)
T ss_dssp             HHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=1.8e-78  Score=633.38  Aligned_cols=386  Identities=34%  Similarity=0.604  Sum_probs=367.4

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|++||+|..++   .+++++||||+||||.|++.+++.+.+.++..+|.|+|++||+++.||++|++++|++.++++
T Consensus         4 ~~~T~~vh~g~~~d---~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~   80 (394)
T d1e5ea_           4 TPATACIHANPQKD---QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT   80 (394)
T ss_dssp             CHHHHHHHSSCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHHHHheeCCCCCC---CCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeee
Confidence            37899999997653   379999999999999999999999999888889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+..++.+++++||+|++++..|++++.++...++++|++++++|..|++++++++++ +|++||+|+|+||++.
T Consensus        81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~-~t~lv~~Etp~NP~l~  159 (394)
T d1e5ea_          81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLK  159 (394)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             ccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcc-cccEEEEeccCCccee
Confidence            999999999999999999999999999999999998899999999999999999999999998 7999999999999999


Q ss_pred             ccCHHHHHHHHH-hCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHH--HhhhcC
Q 009523          303 CVDVKLVSDLCH-KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLG  379 (532)
Q Consensus       303 v~dl~~I~~la~-~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~--~~~~~G  379 (532)
                      +.|+++++++++ ++|+++|||+||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+...+.  ++..+|
T Consensus       160 v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G  239 (394)
T d1e5ea_         160 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG  239 (394)
T ss_dssp             CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred             eehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhC
Confidence            999999988766 47899999999999999999999999999999999999999999999999988876653  345689


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA  459 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~  459 (532)
                      ..++|+++|+++++++|+..||+++++|+..+++||++||.|.+|+||++++||+|+++++|++++|++++|++.++.+.
T Consensus       240 ~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~  319 (394)
T d1e5ea_         240 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEG  319 (394)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987788


Q ss_pred             HHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          460 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       460 ~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +.+|+++|+++.+++|||+++|++++|++++|..+++++++..|+++++||||||+||++|||+||+|||+++
T Consensus       320 a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l  392 (394)
T d1e5ea_         320 AKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDAL  392 (394)
T ss_dssp             HHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999863

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-78  Score=634.46  Aligned_cols=384  Identities=32%  Similarity=0.493  Sum_probs=357.9

Q ss_pred             ccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 009523          144 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  223 (532)
Q Consensus       144 ~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~s  223 (532)
                      ++|++||+|..++  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+||+++.||++||+++|++.+++|+
T Consensus         3 ~~T~~vh~g~~~~--~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~   80 (421)
T d2ctza1           3 FETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATA   80 (421)
T ss_dssp             HHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             hhHhheeCCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEec
Confidence            7899999998764  35799999999999999999999999998888899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCC-HHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          224 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-MEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       224 SG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~d-le~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      |||+|+.+++.+++++||+||+++..|++++.+++..++++|+++.++|..| .+.+++.+++ +|++||+|+|+||++.
T Consensus        81 SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~-~t~li~~EtpsNP~l~  159 (421)
T d2ctza1          81 SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALN  159 (421)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             ChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCC-CceEEEEcCCCcceeE
Confidence            9999999999999999999999999999999999989999999999998765 4566666776 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCC-CCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChH---------------
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------  366 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a-~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~---------------  366 (532)
                      +.|+++|+++||++|+++|||+|++ +|+.++|+++|+|||++|+|||++||+|+++|+++.+++               
T Consensus       160 v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~  239 (421)
T d2ctza1         160 IPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ  239 (421)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCB
T ss_pred             ecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCc
Confidence            9999999999999999999999998 788999999999999999999999999999999997532               


Q ss_pred             ----------------HHHHHH-HHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009523          367 ----------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL  429 (532)
Q Consensus       367 ----------------li~~l~-~~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl  429 (532)
                                      ++.+++ ...+.+|..++|+++|+++|+++|+..||+++.+|+..++++|++||.|.+|+||++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL  319 (421)
T d2ctza1         240 PGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGL  319 (421)
T ss_dssp             GGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTS
T ss_pred             hhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCc
Confidence                            122222 234568999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhHhhhcCC-cccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009523          430 KSHPEHHIATQQMTG-FGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL  508 (532)
Q Consensus       430 ~s~p~~~l~~~~~~g-~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~  508 (532)
                      ++||+|+++++++.| +|+|++|+++++.+.+.+|+++|+++.+++|||+.+|++++|++++|..++++++...||++++
T Consensus       320 ~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~l  399 (421)
T d2ctza1         320 PHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEM  399 (421)
T ss_dssp             TTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTE
T ss_pred             CCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCe
Confidence            999999999999975 6999999999877889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCHHHHHHHHHHHHh
Q 009523          509 VRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       509 IRlSvG~ed~~dli~dL~~AL~  530 (532)
                      ||||||+||++|||+||+|||.
T Consensus       400 iRlSvGlEd~eDLi~DL~qALa  421 (421)
T d2ctza1         400 VRLSVGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             EEEECCSSCHHHHHHHHHHHTC
T ss_pred             EEEEeccCCHHHHHHHHHHhcC
Confidence            9999999999999999999984

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.4e-77  Score=617.87  Aligned_cols=376  Identities=33%  Similarity=0.579  Sum_probs=357.0

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +++|+++|+|...+   ++++++||||+||||.|++..        +..+|.|+|.+||+++.||++||+++|++.+++|
T Consensus         2 ~~~t~~~h~~~~~d---p~ga~~~PI~~sstf~~~~~~--------~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~f   70 (380)
T d1ibja_           2 SVSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF   70 (380)
T ss_dssp             CHHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHhHhhhcCCCCCC---CCCCccCCccCCcceecCCCC--------ccCCceeeCCCChHHHHHHHHHHHHcCCceEEeh
Confidence            37899999998764   379999999999999999753        3467999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+||. ++.+++++||+||+.++.|++++.+++..++++|+++.+++..|++++++++++ +|++||+|+|+||++.
T Consensus        71 sSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~-~t~li~~EtpsNP~l~  148 (380)
T d1ibja_          71 TSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQ  148 (380)
T ss_dssp             SSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCC
T ss_pred             hhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhcc-CccEEEeccccccccc
Confidence            99999996 567899999999999999999999999999999999999999999999999988 7999999999999999


Q ss_pred             ccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCC
Q 009523          303 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  381 (532)
Q Consensus       303 v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~  381 (532)
                      +.|+++|+++||++|+++|||+||++|+.++|+++|+|+|++|+|||++||+|+++|+++.+ +++.++++..+...|..
T Consensus       149 v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~  228 (380)
T d1ibja_         149 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  228 (380)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred             cccHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999998876 46778888888899999


Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009523          382 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI  461 (532)
Q Consensus       382 ~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~  461 (532)
                      ++|+++|+++++++|+..||+++.+|++++++||++||.|.+|+||++++||+|++++++++++|++++|.+. +.+.+.
T Consensus       229 l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~-~~~~a~  307 (380)
T d1ibja_         229 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSK  307 (380)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-CHHHHH
T ss_pred             CCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccccccccccccccccccccc-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875 568899


Q ss_pred             HHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          462 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       462 ~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +|+++|+++.+++|||+.+|++++|++++|..+++++++..|+++++||||||+||++|||+||+|||+.|
T Consensus       308 ~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         308 HLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             HHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-76  Score=616.06  Aligned_cols=385  Identities=26%  Similarity=0.440  Sum_probs=362.0

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccC-CCCCCCCCchhHHHHHHHHHhhhCCCcEEE
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRA-SFEYGRYGNPTTVVVEEKMSALEGAESTVI  221 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~-~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~  221 (532)
                      +++|++||+|+.++  ..+++++||||+||||.|++.+++.+.+.+... .|.|+|.+||+++.||++||+++|++.+++
T Consensus         1 k~~T~~vh~g~~~~--~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~   78 (391)
T d1cl1a_           1 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL   78 (391)
T ss_dssp             CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcccceecCCCCCC--CCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEE
Confidence            47899999997653  357899999999999999999988776665544 589999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009523          222 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  301 (532)
Q Consensus       222 ~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG  301 (532)
                      ++|||+|+.+++.+++++||+||+++..|++++.+++..++++|+++.+++..|.+++++++++ +|++||+|+|+||+.
T Consensus        79 ~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~-~t~~i~~EtpsNP~l  157 (391)
T d1cl1a_          79 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITM  157 (391)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCT-TEEEEEEESSCTTTC
T ss_pred             eccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCcccccccccccc-ccceeeecccCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998 799999999999999


Q ss_pred             cccCHHHHHHHHHh--CCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC
Q 009523          302 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  379 (532)
Q Consensus       302 ~v~dl~~I~~la~~--~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G  379 (532)
                      .+.|+++|+++|++  +|+++|||+||++|+.++|+++|+|+|++|+|||++||+|+++|++++++++.++++......|
T Consensus       158 ~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G  237 (391)
T d1cl1a_         158 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG  237 (391)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhhhccc
Confidence            99999999999976  5999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CH
Q 009523          380 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DL  457 (532)
Q Consensus       380 ~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g--~~  457 (532)
                      ..++|+++|+++++++|+..||+++.+|+..+++||++||.|.+|+||++++||+|+++++|++|+||+++|.+++  +.
T Consensus       238 ~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~  317 (391)
T d1cl1a_         238 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNN  317 (391)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCH
T ss_pred             ccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985  45


Q ss_pred             HHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          458 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       458 ~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      +++.+|+++|+++.+++|||+++|++++|..++|..+.++  +..|+++++||||||+||++|||+||+|||++|
T Consensus       318 e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         318 EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence            7788999999999999999999999999998888776543  467999999999999999999999999999975

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-75  Score=604.56  Aligned_cols=376  Identities=34%  Similarity=0.578  Sum_probs=352.0

Q ss_pred             CccccccccCCcCCCCCCCCcccCCcccccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEe
Q 009523          143 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  222 (532)
Q Consensus       143 ~~~t~~v~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~  222 (532)
                      +|+|++||+|..++   .+++++||||+|+||.|++.++       ....|.|+|.+||+++.||++|++++|++.+++|
T Consensus         7 ~f~T~~vHag~~~d---~~gav~pPI~~ssTf~~~~~~~-------~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~   76 (393)
T d1n8pa_           7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPAN-------PIGTYEYSRSQNPNRENLERAVAALENAQYGLAF   76 (393)
T ss_dssp             CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSSS-------BSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcchheEECCCCCC---CCCCccCCcCCCCceecCCccc-------ccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEe
Confidence            58999999997653   3799999999999999998643       3457999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCc
Q 009523          223 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  302 (532)
Q Consensus       223 sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~  302 (532)
                      +|||+|+.++ ..++++||+||+....|++++.++...++++|+++.+++. +.+++++++++ +|++||+|+|+||++.
T Consensus        77 sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~-~t~lv~~EspsNP~l~  153 (393)
T d1n8pa_          77 SSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKE-NTKLVWIETPTNPTLK  153 (393)
T ss_dssp             SCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCS-SEEEEEECSSCTTTCC
T ss_pred             cCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhh-hcceeEecCcchhhhh
Confidence            9999999755 5778999999999999999999999999999999999984 56899999988 7999999999999999


Q ss_pred             ccCHHHHHHHHH----hCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhh
Q 009523          303 CVDVKLVSDLCH----KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV  377 (532)
Q Consensus       303 v~dl~~I~~la~----~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~  377 (532)
                      +.|+++|+++||    ++|+++|||+||++|+.++|+++|+|||++|+|||++||+|+++|+++.+ +++.++++..+..
T Consensus       154 v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~  233 (393)
T d1n8pa_         154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhh
Confidence            999999999999    68999999999999999999999999999999999999999999998765 5678889998889


Q ss_pred             cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcC--CcccEEEEEEc
Q 009523          378 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMT--GFGGVVSFEVD  454 (532)
Q Consensus       378 ~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~--g~G~~vsf~l~  454 (532)
                      +|..++|+++|+++++++|+..||+++.+|++++++||+.+ |.|.+|+||++++||+|+++++++.  ++|+|++|+++
T Consensus       234 ~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~  313 (393)
T d1n8pa_         234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK  313 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred             cCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEe
Confidence            99999999999999999999999999999999999999987 7899999999999999999999985  56899999999


Q ss_pred             CCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          455 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       455 g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++.+.+.+|++.|+++.+++|||+.+|++++|+.++|..+++++|+..|+++++||||||+||++|||+||++||++
T Consensus       314 ~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~  390 (393)
T d1n8pa_         314 GGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ  390 (393)
T ss_dssp             SCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999985

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=1.3e-65  Score=525.35  Aligned_cols=326  Identities=36%  Similarity=0.628  Sum_probs=311.6

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHHHHhhc
Q 009523          205 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN  284 (532)
Q Consensus       205 ~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~Le~al~  284 (532)
                      +||++||+++|++.+++|+|||+||..++++++++||+||+++..|++++.+++..++++|++++++|..|++.++++++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEeCCCCCCCcccCHHHHHHHH-HhCCCEEEEECCCCCCCcccccccCCcEEEECCccccCCCCCcEEEEEEe
Q 009523          285 NNNVSLFFTESPTNPFLRCVDVKLVSDLC-HKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG  363 (532)
Q Consensus       285 ~~~tklV~lesP~NptG~v~dl~~I~~la-~~~gi~lIvDet~a~~~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~  363 (532)
                      + +|++||+|+|+||+..+.|++++++++ +++|+++|||+|+++|+.++|+++|+|||++|+|||++||+|+++|++++
T Consensus        82 ~-~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~  160 (331)
T d1pffa_          82 P-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             T-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             c-ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccc
Confidence            8 799999999999999999999999985 67899999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHH--HhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhh
Q 009523          364 SGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ  441 (532)
Q Consensus       364 ~~~li~~l~~--~~~~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~  441 (532)
                      +++.+.+.+.  .+..+|..++|+++|+++++++|+..||+++++|+..+++||++||.|++|+||++++||+|++++++
T Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~  240 (331)
T d1pffa_         161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             cccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhc
Confidence            9877665543  34567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009523          442 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL  521 (532)
Q Consensus       442 ~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl  521 (532)
                      +.++|++++|++++ .+.+.+|+++|+++.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||++||
T Consensus       241 ~~~~g~l~sf~l~~-~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~DL  319 (331)
T d1pffa_         241 MKMFGSMIAFDVDG-LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDI  319 (331)
T ss_dssp             CSSCCSEEEEECSS-HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHH
T ss_pred             ccccCcccceeecc-HHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHHH
Confidence            99999999999985 57889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 009523          522 KADVLQALHAI  532 (532)
Q Consensus       522 i~dL~~AL~~l  532 (532)
                      |+||++||+++
T Consensus       320 i~Dl~~AL~~i  330 (331)
T d1pffa_         320 IDDLKQALDLV  330 (331)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999999975

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5e-26  Score=237.68  Aligned_cols=302  Identities=16%  Similarity=0.159  Sum_probs=213.3

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          193 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~a----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      |..++......++.|+.+|+++|+   ++.+++.+++++++.++.+    ..++||+|++.+.+|++....++.+.++.|
T Consensus        58 ~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g  137 (405)
T d1jf9a_          58 HTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG  137 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcC
Confidence            444444445677889999999985   3567777788999887765    358899999999999998888877778889


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCC
Q 009523          266 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGA  339 (532)
Q Consensus       266 v~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~ga  339 (532)
                      +++.+++.+     |++.+++++++ +|++|.++..+|.+|.++|+++|.++||++|+++++|.+++.+ .+.+...+++
T Consensus       138 ~~v~~~~~~~~g~~~~~~~~~~i~~-~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~  216 (405)
T d1jf9a_         138 AELRVIPLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDC  216 (405)
T ss_dssp             CEEEEECBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred             cEEEEECCCCCCcCCHHHHHHhccC-CcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCC
Confidence            999998743     78999999988 7999999999999999999999999999999999999998876 4567778899


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh----------------------hhcCCCccHHHHHHHHHhHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLIIRGMKTL  397 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----------------------~~~G~~~~~~~a~l~l~~l~tl  397 (532)
                      |+++.|+||++||+|   .|+++.++++.+.+....                      +...++.+....+.+..+++.+
T Consensus       217 D~~~~s~hK~~Gp~G---~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~  293 (405)
T d1jf9a_         217 DFYVFSGHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV  293 (405)
T ss_dssp             SEEEEEGGGTTSCSS---CEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHH
T ss_pred             ceeeccccccccCCC---ceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHH
Confidence            999999999998887   678888887665432110                      1112344444444444444432


Q ss_pred             HH-HHHHHH----HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          398 HL-RVQQQN----STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       398 ~~-r~~~~~----~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                      .. .+++..    .....+.+.++..+.+. +..|.               ..+++++|.+++..  ...+...|...+|
T Consensus       294 ~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~-~~~~~---------------~r~~ivsf~~~~~~--~~~~~~~L~~~gI  355 (405)
T d1jf9a_         294 SALGLNNIAEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKHH--AYDVGSFLDNYGI  355 (405)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHTTSTTEE-EESCT---------------TCCSEEEEEETTCC--HHHHHHHHHHTTE
T ss_pred             HHhChHHHHHHHHHHHHHHHhhhhcCCccc-ccCCc---------------CcCcEEEEEcCCCC--HHHHHHHHHHCCc
Confidence            21 122222    23334444555555432 32232               13579999998631  2233344445678


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .++.|+.++.              ......++ ++.||+|+|+.++++.|+.+.++|++
T Consensus       356 ~v~~G~~c~~--------------~~~~~~~~-~g~iRiS~~~ynt~eDid~l~~~l~~  399 (405)
T d1jf9a_         356 AVRTGHHCAM--------------PLMAYYNV-PAMCRASLAMYNTHEEVDRLVTGLQR  399 (405)
T ss_dssp             ECEEECTTCH--------------HHHHHTTC-SCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEEccchhhh--------------hHHHhcCC-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8888865431              11223443 57999999998877777777777764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.1e-26  Score=233.77  Aligned_cols=298  Identities=17%  Similarity=0.180  Sum_probs=195.0

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~al----l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      ...+++|+++|+++|++  +++++++++++++.++.++    +++||+|+++++.|+++...++ .++..|+++..++.+
T Consensus        48 ~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~  126 (391)
T d1p3wa_          48 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQ  126 (391)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCC
Confidence            44667889999999984  5677777889988888754    5899999999999998876654 456679999998754


Q ss_pred             -----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCcc
Q 009523          275 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  348 (532)
Q Consensus       275 -----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK  348 (532)
                           |++++++++++ +|++|++++|+||||.+.|+++|+++||++|+++++|++++.+. +.+....++|+++.|++|
T Consensus       127 ~~~~~d~~~~~~~i~~-~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k  205 (391)
T d1p3wa_         127 RNGIIDLKELEAAMRD-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK  205 (391)
T ss_dssp             TTSCCCHHHHHHHCCT-TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTT
T ss_pred             CCCeEcHHHHHHhCCC-CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccc
Confidence                 68999999988 79999999999999999999999999999999999999987653 456667789999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHh--------hhcCCCccHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLH--------HVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~--------~~~G~~~~~~~a~l~---l~~l~tl~~r~~~~~~~a~~la~~L~~  417 (532)
                      ++|+++   .|+++.+++....+....        ...|....+....+.   ....+......++..+....+.+.|.+
T Consensus       206 ~~g~~g---~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  282 (391)
T d1p3wa_         206 IYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD  282 (391)
T ss_dssp             TTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ccCCCc---eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            998886   577776665433322110        011111111111111   111122222333333444445555554


Q ss_pred             CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHH
Q 009523          418 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       418 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      .+.+ .+..+. +            .+...++.|.+++  .....++..|+  +++++.|..++...        ..+..
T Consensus       283 ~~~~-~~~~~~-~------------~~~~~~~~~~~~~--~~~~~~~~~l~--~i~v~~G~~c~~~~--------~~~~~  336 (391)
T d1p3wa_         283 IEEV-YLNGDL-E------------HGAPNILNVSFNY--VEGESLIMALK--DLAVSSGSACTSAS--------LEPSY  336 (391)
T ss_dssp             STTE-EECSCT-T------------TSCTTEEEEEETT--SCHHHHHHHTT--TEECBCCCC--------------CCCH
T ss_pred             hcCe-eecccc-c------------ccCceEEEEEeCC--CChHHHHHHhC--CCEEEccccccCCc--------cchhH
Confidence            4432 121111 1            1245678888875  33455666665  67788776543211        11223


Q ss_pred             HHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHH
Q 009523          498 ERLKYGIM----DNLVRFSFGVEDFEDLKADVLQAL  529 (532)
Q Consensus       498 ~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL  529 (532)
                      .+..+|++    .+.||+|++..++++.++.+.++|
T Consensus       337 ~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l  372 (391)
T d1p3wa_         337 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELV  372 (391)
T ss_dssp             HHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHH
T ss_pred             HHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHH
Confidence            34556665    368999999865444444444444

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.94  E-value=2e-25  Score=231.64  Aligned_cols=283  Identities=15%  Similarity=0.188  Sum_probs=191.2

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..+|++++++++    |.    ++.++++++++|+..++.++++|||+|++++|+|.+....+    +..|..+..++. 
T Consensus        69 ~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~~~~~v~~~~~  144 (388)
T d1j32a_          69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMV----KLAEGTPVILPTT  144 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHH----HHhcCeEEEEecc
Confidence            456667776654    43    34555555569999999999999999999999998765433    344555555542 


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----ccc-----
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-----  335 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~l-----  335 (532)
                            .|+++|++++++ +++++++++|+||||.+++   +++|+++|+++|+++|+||+|......    .++     
T Consensus       145 ~~~~~~~d~~~l~~~~~~-~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~  223 (388)
T d1j32a_         145 VETQFKVSPEQIRQAITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP  223 (388)
T ss_dssp             GGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred             cccccCCCHHHHHHhCCC-CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCc
Confidence                  379999999987 7999999999999999998   567888899999999999998643221    111     


Q ss_pred             -ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH----HHHHHHHHHHHHHHHH
Q 009523          336 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR  410 (532)
Q Consensus       336 -~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l----~tl~~r~~~~~~~a~~  410 (532)
                       .....+++.|+||.++.+| .+.||+++++++++.+...........+....+++...+    +.+....+...++...
T Consensus       224 ~~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~  302 (388)
T d1j32a_         224 EAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRY  302 (388)
T ss_dssp             HHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred             ccccceeEecCChhhhhcch-hHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence             1124589999999998665 468999999999988877665555555555544443333    2344444555677788


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccccccCccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      +.+.|++++++. +..|.                .|.++|+.++........|.+.| +..++.+..|..+         
T Consensus       303 ~~~~l~~~~g~~-~~~p~----------------gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F---------  356 (388)
T d1j32a_         303 MLDALNAMPGLE-CPKPD----------------GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAF---------  356 (388)
T ss_dssp             HHHHHHTCTTCB-CCCCC----------------BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGG---------
T ss_pred             HHHHHHhCCCCE-ecCCC----------------ceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEecccc---------
Confidence            888888876543 22221                46678888763211222333332 2346666666432         


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHhh
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALHA  531 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~~  531 (532)
                                   | .++++||+++.++  .++.++.|.++|+.
T Consensus       357 -------------~-~~~~~Rls~~~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         357 -------------G-ADDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             -------------T-CTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             -------------C-CCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence                         2 2579999999632  34556777777764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.94  E-value=3.8e-25  Score=227.92  Aligned_cols=292  Identities=14%  Similarity=0.117  Sum_probs=209.9

Q ss_pred             CCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          196 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ++......+++|+.||+++|+  ++.++++||++++++++.++ .++||+|++++.+|+++...+..+.++.|+++.+++
T Consensus        45 ~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~  124 (381)
T d1elua_          45 NQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFP  124 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccc
Confidence            334445677889999999997  46778888899999999988 689999999999999988777666777899999987


Q ss_pred             CC-------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC----CCEEEEECCCCCCC-cccccccCCc
Q 009523          273 PA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK----GAIVCIDGTFATPL-NQKALSLGAD  340 (532)
Q Consensus       273 ~~-------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~----gi~lIvDet~a~~~-~~~~l~~gaD  340 (532)
                      ..       +.+.+++++++ +|++|++++++|+||.+.|+++|.++|+++    ++++++|++++.+. +.+...+++|
T Consensus       125 ~~~~~~~~~~~~~l~~~i~~-~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D  203 (381)
T d1elua_         125 VAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVD  203 (381)
T ss_dssp             CGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCS
T ss_pred             cccccccchHHHHHHhhhcc-cccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccc
Confidence            43       25667777777 799999999999999999999999999984    69999999987653 3455567899


Q ss_pred             EEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh----------------------hhcCCCccHHHHHHHHHhHHH--
Q 009523          341 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLIIRGMKT--  396 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~----------------------~~~G~~~~~~~a~l~l~~l~t--  396 (532)
                      +++.|++|+++++.+  .|+++.++++.+.+....                      ....++.+....+.+..+++.  
T Consensus       204 ~~~~s~~K~~~~p~G--~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~  281 (381)
T d1elua_         204 YYAFTGHKWFAGPAG--VGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ  281 (381)
T ss_dssp             EEEEESSSTTCCCTT--CEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccch--hhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHH
Confidence            999999999987753  477777776655432110                      011123333333333333332  


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          397 ----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       397 ----l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                          ...+.++..++++++.+.|++.|++..+ .+.-   |           .+++++|.+++. ...+.+...|+..++
T Consensus       282 ~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~---~-----------~~~~vsf~~~~~-~~~~~i~~~L~~~gi  345 (381)
T d1elua_         282 RQGTAEERYQAICQRSEFLWRGLNQLPHVHCL-ATSA---P-----------QAGLVSFTVDSP-LGHRAIVQKLEEQRI  345 (381)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES-CSSC---C-----------SSSEEEEEECSS-SCHHHHHHHHHHTTE
T ss_pred             HhcccccchhhhhhHHHHHHHHHhcCCCeEec-CCCC---c-----------cccEEEEEcCCC-CCHHHHHHHHHhCCc
Confidence                2344566667788889999998876432 2211   1           367999999763 223344455554565


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      .++.-                         + .++.||+|++..++++.++.+.++|+++
T Consensus       346 ~v~~~-------------------------~-~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         346 YLRTI-------------------------A-DPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             ECEEE-------------------------T-TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EEEec-------------------------C-CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            54310                         0 2578999999988888889998888764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6e-24  Score=219.67  Aligned_cols=275  Identities=14%  Similarity=0.144  Sum_probs=182.9

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..+|++.+++++    |.    +++++++++++|+..++.+++++||.|++++|+|.+...    .++..|.++..++. 
T Consensus        70 ~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~----~~~~~g~~~~~v~~~  145 (382)
T d1b5pa_          70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE----MVRFAGGVVVEVETL  145 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEECC
T ss_pred             CHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHH----HHHHhcCeEEEEecc
Confidence            556777777765    32    356655555699999999999999999999999987553    34556777776642 


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc----ccccc--cC
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LG  338 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~----~~~l~--~g  338 (532)
                            .|++++++++++ +++++++++|+||||.+++   +++|+++|+++|+++|+||+|.....    ..+..  ..
T Consensus       146 ~~~~~~~d~~~l~~~~~~-~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  224 (382)
T d1b5pa_         146 PEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE  224 (382)
T ss_dssp             GGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred             cccccCCCHHHHHHhCCC-CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCC
Confidence                  289999999987 7999999999999999997   56788889999999999999875322    11211  13


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH------HH-HHHHHHHHHHHHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KT-LHLRVQQQNSTALRM  411 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l------~t-l~~r~~~~~~~a~~l  411 (532)
                      ..+++.|+||.|+-+| .+.||+++++++++.+...........+......+...+      +. +....+...++.+.+
T Consensus       225 ~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (382)
T d1b5pa_         225 HTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLL  303 (382)
T ss_dssp             TEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecchhhccCcH-hheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHH
Confidence            4589999999998555 467999999999988877665554444444332222221      11 112222233445555


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY  491 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~  491 (532)
                      .+.+...+ +. +..|.                .|.++|+++++...+...+.+.+...++.+..|..+.          
T Consensus       304 ~~~l~~~g-~~-~~~p~----------------gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~----------  355 (382)
T d1b5pa_         304 LEGLTALG-LK-AVRPS----------------GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA----------  355 (382)
T ss_dssp             HHHHHHHT-CC-BCCCS----------------BTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT----------
T ss_pred             HHHHhhcC-Ce-EecCC----------------ceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccC----------
Confidence            55565532 21 22221                4678899886422233444555555678777775432          


Q ss_pred             cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          492 WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       492 ~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                                   .++++||+++. +.+++.+.+
T Consensus       356 -------------~~~~iRis~~~-~~e~l~~al  375 (382)
T d1b5pa_         356 -------------AFGHVRLSYAT-SEENLRKAL  375 (382)
T ss_dssp             -------------CTTEEEEECCS-CHHHHHHHH
T ss_pred             -------------CCCeEEEEEcC-CHHHHHHHH
Confidence                         25789999986 444443333

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=2e-24  Score=223.16  Aligned_cols=285  Identities=12%  Similarity=0.129  Sum_probs=191.3

Q ss_pred             hHHHHHHHHHhhhC----C-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          202 TTVVVEEKMSALEG----A-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       202 ~~~~Le~~lA~l~g----a-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ...+|+++||++++    .     ++.++++++++++..++.++++|||+|+++.|+|.....    .+...|.++..++
T Consensus        63 G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~~~  138 (388)
T d1gdea_          63 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP----AVILAGGKPVEVP  138 (388)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH----HHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHH----HHHHcCCEEEEee
Confidence            35678888887642    1     345556666699999999999999999999999998553    3445677777665


Q ss_pred             C-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----cc-cc-
Q 009523          273 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS-  336 (532)
Q Consensus       273 ~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~-l~-  336 (532)
                      .       .|+++|++++++ +++++++++|+||||.+++   +++|+++|++++++||+||+|......    .+ .. 
T Consensus       139 ~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~  217 (388)
T d1gdea_         139 TYEEDEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL  217 (388)
T ss_dssp             CCGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cccccCCCCCHHHHHHhCcc-CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhc
Confidence            3       379999999987 7999999999999999987   667888899999999999998753221    11 11 


Q ss_pred             ---cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH------HHHHHHHHHHHH
Q 009523          337 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNST  407 (532)
Q Consensus       337 ---~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~------tl~~r~~~~~~~  407 (532)
                         ....+++.|+||.++.+| .+.||+++++++++.+...........+......+...++      .+....+...++
T Consensus       218 ~~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  296 (388)
T d1gdea_         218 DGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR  296 (388)
T ss_dssp             TTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCChhhccCcc-ccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHh
Confidence               124589999999998555 4679999999999888876665555555544433333332      222223333455


Q ss_pred             HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH-cCCCceeecCCCcccccccC
Q 009523          408 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA-LKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       408 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~-L~~~~i~vs~G~~~sl~~~p  486 (532)
                      ...+.+.|.... +. +..|                ..|.++|+++++.......|.+. ++..++.+..|..+..    
T Consensus       297 ~~~~~~~l~~~~-~~-~~~p----------------~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~----  354 (388)
T d1gdea_         297 RKLVWKRLNEMG-LP-TVKP----------------KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK----  354 (388)
T ss_dssp             HHHHHHHHHHTT-CC-CCCC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG----
T ss_pred             hhhhhhhhhhcc-cc-ccCC----------------CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCC----
Confidence            556666666542 11 1112                14668888886421223444443 2344677777654321    


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~  531 (532)
                                       ..++++|||++..  +.++.++.|.++|++
T Consensus       355 -----------------~~~~~iRis~~~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         355 -----------------AGEGYVRISYATAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             -----------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                             0257999999953  334556777777764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.93  E-value=9e-24  Score=220.62  Aligned_cols=307  Identities=17%  Similarity=0.159  Sum_probs=217.3

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCCcchHHHHHHhcccC
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKM  264 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~--~-~i~~sSG~~Ai~~al~a----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~  264 (532)
                      .|.+++......++.|+.+|+++|++  + .+++++++++++.++..    -+++||+|++++..|++....+....++.
T Consensus        57 ~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~  136 (408)
T d1t3ia_          57 AHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT  136 (408)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc
Confidence            35556655677888999999999973  4 55556666888887765    36789999999999999887777677788


Q ss_pred             CcEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccC
Q 009523          265 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLG  338 (532)
Q Consensus       265 Gv~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~g  338 (532)
                      |+++..++..     +.+.+++++++ +|++|.+...+|.+|.++|+++|.++|+++|+++++|.+++.+ .+.+..++|
T Consensus       137 g~~v~~~~~~~~~~~~~~~l~~~~~~-~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~  215 (408)
T d1t3ia_         137 GAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLID  215 (408)
T ss_dssp             CCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT
T ss_pred             CceEeeeeccccccccHHHhhhccCC-CceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccC
Confidence            9999888642     68999999988 7999999999999999999999999999999999999998765 456667789


Q ss_pred             CcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh---------------------hhcCCCccHHHHHHHHHhHHHH
Q 009523          339 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---------------------HVLGGALNPNAAYLIIRGMKTL  397 (532)
Q Consensus       339 aDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~---------------------~~~G~~~~~~~a~l~l~~l~tl  397 (532)
                      +|+++.|++|++||+|   .|+++.+++....+....                     +.-.++.+....+.+..+++.+
T Consensus       216 ~D~~~~s~hK~~gp~G---~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~  292 (408)
T d1t3ia_         216 CDWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL  292 (408)
T ss_dssp             CSEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH
T ss_pred             CceEEeccccccCCCC---ccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHH
Confidence            9999999999998876   688888887765432110                     1112334444333334444432


Q ss_pred             HH-----HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009523          398 HL-----RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI  472 (532)
Q Consensus       398 ~~-----r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i  472 (532)
                      ..     ..++.....+++.+.+++.+.+..+ .|.-..           ...+++++|.+++  .....++..|...++
T Consensus       293 ~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~-----------~~~~~iv~f~~~~--~~~~~v~~~L~~~gI  358 (408)
T d1t3ia_         293 TDLGMENIHNYEVELTHYLWQGLGQIPQLRLY-GPNPKH-----------GDRAALASFNVAG--LHASDVATMVDQDGI  358 (408)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEE-SCCGGG-----------SCBCSEEEEEETT--BCHHHHHHHHHTTTE
T ss_pred             HHcCHHHHHHHHHHHHhHHhhhhccCcccccc-CCCccc-----------cCcceEEEEEeCC--CCHHHHHHHHhhCCc
Confidence            21     1223334556666777777776433 232110           1246799999986  223445555666788


Q ss_pred             eecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          473 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       473 ~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .++.|..++-   |.           ...++ ..+.||||++..++++.|+.+.++|++
T Consensus       359 ~v~~G~~c~~---~~-----------~~~~~-~~g~vRiS~~~ynt~~did~li~~L~~  402 (408)
T d1t3ia_         359 AIRSGHHCTQ---PL-----------HRLFD-ASGSARASLYFYNTKEEIDLFLQSLQA  402 (408)
T ss_dssp             ECBCSCTTCH---HH-----------HHHTT-CCCCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEecCccccc---HH-----------HHhhc-CCccEEEECCCCCCHHHHHHHHHHHHH
Confidence            8998865431   10           11123 246899999998887777777777764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=1.9e-25  Score=230.31  Aligned_cols=202  Identities=21%  Similarity=0.202  Sum_probs=161.5

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhccCCCEE-EEc-CCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          203 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHI-VTT-TDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       203 ~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all~~Gd~V-Iv~-~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      .+.+++..++.++.   ++++++++|++|+..++.++. +||.| +++ .+.|.+....    ++..|+++  ++.+|++
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~~~----~~l~g~~~--v~~~d~e  124 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERS----CKIVNAKY--FESDKVG  124 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHHHHH----HHHTTCEE--EEESCHH
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhHHHH----HHhcCCeE--ECCCCHH
Confidence            45677777777764   457888999999999999876 45554 444 5788775543    34456654  5677999


Q ss_pred             HHHHhhcCCCeeEEEEeCCCCC-CCcccCHHHHHHHHHhCCCEEEEECCCCCCCc-----ccccccCCcEEEECCccccC
Q 009523          278 GLEAALNNNNVSLFFTESPTNP-FLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       278 ~Le~al~~~~tklV~lesP~Np-tG~v~dl~~I~~la~~~gi~lIvDet~a~~~~-----~~~l~~gaDivv~S~sK~lg  351 (532)
                      +|++++++ +|++|++++|+|| ++.+.|+++|+++|++||+++++|++|+.++.     ..+...|+|++++|+||+++
T Consensus       125 ~l~~~i~~-~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~  203 (366)
T d2aeua1         125 EILNKIDK-DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME  203 (366)
T ss_dssp             HHHTTCCT-TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS
T ss_pred             HHHHhcCC-CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccc
Confidence            99999998 7999999999886 55678899999999999999999999865422     23456799999999999999


Q ss_pred             CCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH-LRVQQQNSTALRMAKIL  415 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~-~r~~~~~~~a~~la~~L  415 (532)
                      |+.   +|+++++++++++++.....+|.+.++..++++.++++++. .|++++.++++.++..+
T Consensus       204 g~~---~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~  265 (366)
T d2aeua1         204 GPR---GGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSK  265 (366)
T ss_dssp             SCS---CEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_pred             ccc---eeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            874   89999999999999998888898899999999999998864 47788888877655444

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.92  E-value=1.5e-23  Score=217.57  Aligned_cols=294  Identities=11%  Similarity=0.039  Sum_probs=182.7

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhccc
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      .|.|.. +.   .+||+++|+++    |.    +++++++++++|+..+++++++|||+|+++.|.|.+....    ...
T Consensus        61 ~~~Y~~-g~---~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~----~~~  132 (394)
T d1c7na_          61 VLGYTG-PT---EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA----IKN  132 (394)
T ss_dssp             CCSSBC-CC---HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHT
T ss_pred             CcCCCC-CC---HHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhH----Hhh
Confidence            455653 22   36777777765    43    4567777777999999999999999999999999876543    334


Q ss_pred             CCcEEEEeCC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-
Q 009523          264 MGITATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-  331 (532)
Q Consensus       264 ~Gv~v~~vd~--------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-  331 (532)
                      .|.....++.        .|.+.++.++...++++|++++|+||||.+.+   +++|+++|++++++||+||+|..... 
T Consensus       133 ~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~  212 (394)
T d1c7na_         133 QERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP  212 (394)
T ss_dssp             TTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT
T ss_pred             hhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccC
Confidence            4555444432        36777887775547999999999999999998   55688889999999999999865321 


Q ss_pred             ---cccc------ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCc-cHHHHHHHHHhH----HHH
Q 009523          332 ---QKAL------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIRGM----KTL  397 (532)
Q Consensus       332 ---~~~l------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~-~~~~a~l~l~~l----~tl  397 (532)
                         ..+.      .....+++.|+||.++..|..+|++++.++.+.+.+........... ......++....    +..
T Consensus       213 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  292 (394)
T d1c7na_         213 GYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWL  292 (394)
T ss_dssp             TCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHH
T ss_pred             CccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhh
Confidence               1111      11345889999999987775555555556667777766554443332 222222221111    222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeec
Q 009523          398 HLRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPS  475 (532)
Q Consensus       398 ~~r~~~~~~~a~~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs  475 (532)
                      ....+...++.+.+.+.++.+ +++. +..|                ..|.++|+.++........|.+.| +..++.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~p----------------~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~  355 (394)
T d1c7na_         293 DGCIKVIDKNQRIVKDFFEVNHPEIK-APLI----------------EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFD  355 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSB-CCCC----------------SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCE
T ss_pred             cccccccchhhhhhhhhhhcccccee-ecCC----------------CceeEEEEECCCCCCCHHHHHHHHHHhCCEEEE
Confidence            333333344555556666643 3332 1111                145678998864111223333332 33466666


Q ss_pred             CCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHhh
Q 009523          476 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALHA  531 (532)
Q Consensus       476 ~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~~  531 (532)
                      .|..+..   +                  .++++|||++.++  .++.++.|.++|++
T Consensus       356 pG~~Fg~---~------------------~~~~iRis~~~~~e~i~eal~rl~~~l~~  392 (394)
T d1c7na_         356 EGYIFGD---G------------------GIGFERINLAAPSSVIQESLERLNKALKD  392 (394)
T ss_dssp             EGGGGCG---G------------------GTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhCC---C------------------CCCEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            6654321   0                  2579999998632  34556677777765

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.8e-23  Score=210.06  Aligned_cols=283  Identities=16%  Similarity=0.192  Sum_probs=191.4

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCC-EEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd-~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ..||+++...+|+++||+++|.+ +.|++++|+ +++..+++++++||| .|+++.|.|....    ......|.++..+
T Consensus        50 l~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~----~~~~~~g~~v~~~  125 (354)
T d1fg7a_          50 LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVECRTV  125 (354)
T ss_dssp             TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH----HHHHHHTCEEEEC
T ss_pred             HhcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccch----hhhhccCceeecc
Confidence            46889999899999999999973 445555555 999999999999998 5888999997644    3344557888776


Q ss_pred             CC-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHH--HhCCCEEEEECCCCCCCccc-----ccccCC
Q 009523          272 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC--HKKGAIVCIDGTFATPLNQK-----ALSLGA  339 (532)
Q Consensus       272 d~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la--~~~gi~lIvDet~a~~~~~~-----~l~~ga  339 (532)
                      +.     .|+++++..+.  ++++|++++||||||.+.+.+++..++  .+++.++|+|+++.......     ......
T Consensus       126 ~~~~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~  203 (354)
T d1fg7a_         126 PTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH  203 (354)
T ss_dssp             CCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred             ccccccccchhhhhhccc--ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccccc
Confidence            53     27888888774  599999999999999999866544443  34678899999866533211     112334


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAKILE  416 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~---l~~l~tl~~r~~~~~~~a~~la~~L~  416 (532)
                      .+++.|+||.+|..| .+.||+++++++++.+.+....+...........+   .........++++..+.++.+.+.|.
T Consensus       204 ~iv~~S~SK~~~laG-lRiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~  282 (354)
T d1fg7a_         204 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALK  282 (354)
T ss_dssp             EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEeCCccccCCCc-cccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHH
Confidence            588999999998665 46899999999999988765544322111111111   12233344455566677788888888


Q ss_pred             hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCH
Q 009523          417 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQ  496 (532)
Q Consensus       417 ~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~  496 (532)
                      +.+.+..+ +|.                .|+++++++++.    ..+.+.|...++.+..|+.+                
T Consensus       283 ~~~~~~~~-~p~----------------~~~f~~~~~~~~----~~~~~~L~~~gIlvr~~~~~----------------  325 (354)
T d1fg7a_         283 EIPCVEQV-FDS----------------ETNYILARFKAS----SAVFKSLWDQGIILRDQNKQ----------------  325 (354)
T ss_dssp             HSTTEEEE-CCC----------------SSSEEEEEETTH----HHHHHHHHHTTEECEECTTS----------------
T ss_pred             hCCCccee-CCC----------------CceEEEEeCCCH----HHHHHHHHHCCcEEecCCCC----------------
Confidence            88776544 342                467899999742    33444554456666544321                


Q ss_pred             HHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          497 SERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       497 ~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                           .|. +++||||+|.+   +..+.+.++|+
T Consensus       326 -----~~~-~~~lRisigt~---ee~~~~l~aLk  350 (354)
T d1fg7a_         326 -----PSL-SGCLRITVGTR---EESQRVIDALR  350 (354)
T ss_dssp             -----TTC-TTEEEEECCCH---HHHHHHHHHHH
T ss_pred             -----CCC-CCEEEEEeCCH---HHHHHHHHHHh
Confidence                 112 57999999953   22345555554

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=5.6e-24  Score=216.74  Aligned_cols=213  Identities=14%  Similarity=0.255  Sum_probs=163.3

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC------
Q 009523          201 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------  274 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~------  274 (532)
                      |..+.+|+++|+++|.++++++++|++|+.+++.++++|||+||++.++|.+++..    +...|.++.+++.+      
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~----~~~~g~~v~~v~~~~~~~~~  122 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYA  122 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCC
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchH----HHhccceEEEeeeccccccc
Confidence            46788999999999999999999999999999999999999999999999886643    44568888888643      


Q ss_pred             -CHHHHHHhhcC----CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCC-cccccccCCcEEEECCcc
Q 009523          275 -DMEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  348 (532)
Q Consensus       275 -dle~Le~al~~----~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~-~~~~l~~gaDivv~S~sK  348 (532)
                       |++++++++++    .++++|++++|+||||.+.|+++|+++|++||+++++|++++.+. +.+..++|+|+++.|+||
T Consensus       123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K  202 (364)
T d2e7ja1         123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK  202 (364)
T ss_dssp             CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHH
T ss_pred             cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeecccc
Confidence             68899888853    246799999999999999999999999999999999999987653 455667799999999999


Q ss_pred             ccCCCCCcEEEEEEeChHHHHHHHHHhh--------hcCCCccHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHh
Q 009523          349 FIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAKILEA  417 (532)
Q Consensus       349 ~lgg~gd~~gG~lv~~~~li~~l~~~~~--------~~G~~~~~~~a~l~l~~l~tl~~---r~~~~~~~a~~la~~L~~  417 (532)
                      ++++++  .+|++++++++++.+.....        ..+........+.+..+++....   ++.+..++++++.+.|++
T Consensus       203 ~~~~~g--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  280 (364)
T d2e7ja1         203 SMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEK  280 (364)
T ss_dssp             HSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC--CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999886  36899998877665432111        12222222233334444444332   233445667777777776


Q ss_pred             CC
Q 009523          418 HP  419 (532)
Q Consensus       418 ~p  419 (532)
                      .+
T Consensus       281 ~g  282 (364)
T d2e7ja1         281 LG  282 (364)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4.2e-23  Score=211.80  Aligned_cols=271  Identities=16%  Similarity=0.172  Sum_probs=191.5

Q ss_pred             CCCchh-HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          197 RYGNPT-TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       197 R~~~p~-~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      +|+.+. ..+||++||++++.  ++++++++|++++..++.+++++||.|+++.|+|......+    ...|..+..++.
T Consensus        56 ~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~----~~~g~~~~~~~~  131 (368)
T d1v2da_          56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDA----FLAGAKARLVRL  131 (368)
T ss_dssp             SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHH----HhcCCccceecc
Confidence            455543 67899999999996  45788888889999999999999999999999999866444    334554444321


Q ss_pred             --------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcccc------cc
Q 009523          274 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA------LS  336 (532)
Q Consensus       274 --------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~~------l~  336 (532)
                              .|++.+++++++ +++++++++|+||||.+.+   +++|+++|++||+++|+|+++........      ..
T Consensus       132 ~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~  210 (368)
T d1v2da_         132 DLTPEGFRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA  210 (368)
T ss_dssp             EEETTEEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred             ccccccccCCHHHHHHhhcc-CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc
Confidence                    389999999988 6999999999999999998   67788889999999999999764322111      12


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH------HHHHHHHHHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALR  410 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~------tl~~r~~~~~~~a~~  410 (532)
                      ....+++.|++|.++.+| .+.|++++++++++.+.......+...+......+...+.      .+....+...++++.
T Consensus       211 ~~~~~~~~~~sk~~~~~G-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  289 (368)
T d1v2da_         211 PERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL  289 (368)
T ss_dssp             TTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccceeecccccccccc-cccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhh
Confidence            234578899999888776 4688999999999888877766665555544333332222      222333344566777


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCcccc
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      +.+.|+++ ++. +..|.                .|.++|+.+++  .++.+++++   .++.+..|..+..-       
T Consensus       290 l~~~l~~~-g~~-~~~p~----------------g~~~~~~~l~~--~~~~~ll~~---~gI~v~pg~~F~~~-------  339 (368)
T d1v2da_         290 LAGGLRAM-GLR-VYVPE----------------GTYFLMAELPG--WDAFRLVEE---ARVALIPASAFYLE-------  339 (368)
T ss_dssp             HHHHHHHT-TCC-EECCS----------------BSSEEEEECTT--CCHHHHHHH---TCEECEEGGGGCSS-------
T ss_pred             hhhhHHhc-CcE-EecCC----------------ceeEEEEeCCc--cHHHHHHHh---CCEEEEechhhCCC-------
Confidence            88888876 332 22221                46688999985  334555554   46777766544321       


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                                  +..+++||||++.
T Consensus       340 ------------~~~~~~iRis~~~  352 (368)
T d1v2da_         340 ------------DPPKDLFRFAFCK  352 (368)
T ss_dssp             ------------SCCTTEEEEECCS
T ss_pred             ------------CCCCCEEEEEecC
Confidence                        1136899999984

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.3e-22  Score=205.69  Aligned_cols=295  Identities=18%  Similarity=0.132  Sum_probs=183.3

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhccc
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  263 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~  263 (532)
                      .+.|+....   .++++++++++    |.    +++++++++++++..++.+++++||+|++++|.|......+    +.
T Consensus        29 ~~~Y~~~~g---~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~  101 (361)
T d1d2fa_          29 VFGYSRWKN---DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EG  101 (361)
T ss_dssp             CCCCCCSCC---HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HH
T ss_pred             CCCCCCCCC---HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHH----Hh
Confidence            355655443   24666666543    53    45777777779999999999999999999999998765433    34


Q ss_pred             CCcEEEEeCC--------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc-
Q 009523          264 MGITATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-  331 (532)
Q Consensus       264 ~Gv~v~~vd~--------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~-  331 (532)
                      .|..+..++.        .|++.+++.+.+.++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..... 
T Consensus       102 ~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~  181 (361)
T d1d2fa_         102 NQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG  181 (361)
T ss_dssp             TTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred             hcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccc
Confidence            4555544421        37899999987668999999999999999987   77899999999999999999875321 


Q ss_pred             ------ccccccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHH-HHHhhhcC-CCccHHHHHHHHHhHHH----HH
Q 009523          332 ------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQI-RNLHHVLG-GALNPNAAYLIIRGMKT----LH  398 (532)
Q Consensus       332 ------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l-~~~~~~~G-~~~~~~~a~l~l~~l~t----l~  398 (532)
                            .........+++.|+||.++.+| ...|+++... ...+.. .......+ ...........+.....    ..
T Consensus       182 ~~~~~~~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  260 (361)
T d1d2fa_         182 EQPHIPWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLD  260 (361)
T ss_dssp             SSCCCCGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHH
T ss_pred             ccccccccccccccccccccccccccccc-ccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhh
Confidence                  11122234588899999887655 3568776543 333333 33332222 22333333222222222    22


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecC
Q 009523          399 LRVQQQNSTALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSF  476 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~  476 (532)
                      .......++++.+.+.+.+. +.+. +..|.                .|.++|++++....+...|.+.| +..++.+..
T Consensus       261 ~~~~~~~~r~~~~~~~~~~~~~~~~-~~~p~----------------gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~p  323 (361)
T d1d2fa_         261 ALRIYLKDNLTYIADKMNAAFPELN-WQIPQ----------------STYLAWLDLRPLNIDDNALQKALIEQEKVAIMP  323 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCC-CCCCS----------------BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEE
T ss_pred             cccccchhhHHHHHHHhhhhccccc-ccccC----------------ceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEe
Confidence            22233344555555555442 3321 22221                35678888853112334555554 555788877


Q ss_pred             CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhhC
Q 009523          477 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHAI  532 (532)
Q Consensus       477 G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~~l  532 (532)
                      |..+..   +                  .+++||||++.+  +.++.++.|.++++++
T Consensus       324 G~~F~~---~------------------~~~~vRis~~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         324 GYTYGE---E------------------GRGFVRLNAGCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             GGGGCG---G------------------GTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCC---C------------------CCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            754320   0                  257999999863  3355577777777653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=6.7e-22  Score=205.35  Aligned_cols=284  Identities=13%  Similarity=0.087  Sum_probs=179.5

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..+|+++|++++    |.    ++.++++++++++.+++.+++.+||+|++++|+|.....    .+...|.++..++. 
T Consensus        72 ~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~----~~~~~g~~~v~v~~~  147 (395)
T d1xi9a_          72 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG----LVKFYGGKPVEYRTI  147 (395)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchh----hhhhcCCEEEEEecc
Confidence            456666666654    43    346666666799999999999999999999999986543    34455766665541 


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----cc---ccc
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA---LSL  337 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~~---l~~  337 (532)
                            .|++++++.+.+ ++++|++++|+||||.+.+   +++|+++|+++++++|.|++|......    .+   ...
T Consensus       148 ~~~~~~~d~~~~~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  226 (395)
T d1xi9a_         148 EEEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD  226 (395)
T ss_dssp             GGGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred             ccccccchHHHHHHhhcc-cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCC
Confidence                  278999999987 7999999999999999998   567888899999999999997653221    11   122


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEe--ChHHHHHHHHH---hhhcCCCccHHHHHHHHHhH----HHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNL---HHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  408 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~--~~~li~~l~~~---~~~~G~~~~~~~a~l~l~~l----~tl~~r~~~~~~~a  408 (532)
                      ...+++.|+||.++.+|. +.||++.  +...+..+...   ........+...+.++...+    +.+....+...+++
T Consensus       227 ~~vi~~~S~SK~~~~~Gl-RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  305 (395)
T d1xi9a_         227 VPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERR  305 (395)
T ss_dssp             SCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcchhcccchh-hcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            335899999999997764 4566543  33333333221   11122222222222222222    34444455566788


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--HHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--LTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      +.+.+.|++.+.+. +..|.                .|.++|++++..  ....+.+.+.++..++.+..|..+..    
T Consensus       306 ~~l~~~L~~~~~~~-~~~p~----------------gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~----  364 (395)
T d1xi9a_         306 DYIYKRLNEIPGIS-TTKPQ----------------GAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE----  364 (395)
T ss_dssp             HHHHHHHHTSTTEE-CCCCC----------------BSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG----
T ss_pred             HHHHHHHHhCCCce-ecCCC----------------eeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCC----
Confidence            88899998876542 22232                467788888632  11111222223344666666654321    


Q ss_pred             ccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          487 AIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                                       -.++++||+++..  +.++.++.|.++|+
T Consensus       365 -----------------~~~~~~Ris~~~~~e~l~eal~rl~~~l~  393 (395)
T d1xi9a_         365 -----------------YGAGHFRAVFLPPIEILEEAMDRFEKFMK  393 (395)
T ss_dssp             -----------------GGTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence                             0257899999852  22344556666665

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.6e-22  Score=203.30  Aligned_cols=278  Identities=17%  Similarity=0.173  Sum_probs=184.2

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-  273 (532)
                      ..+|++++++++    |.    ++.+++++|++|+..++.+++++||.|++++|.|.......    ...+.....++. 
T Consensus        67 ~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~~~~~~~~~~~  142 (375)
T d1o4sa_          67 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETF  142 (375)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECC
T ss_pred             CHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhh----hcccccccccccc
Confidence            567777777764    32    45677777779999999999999999999999998765433    334555544432 


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----c----ccc
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K----ALS  336 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~----~l~  336 (532)
                            .|.+.++....+ +++++++++|+||||.+.+   +++|+++|++|+++||+||+|......    .    +..
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  221 (375)
T d1o4sa_         143 MSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG  221 (375)
T ss_dssp             GGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS
T ss_pred             ccccccchhHHHHHhhcc-CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCC
Confidence                  267888887776 7999999999999999997   567888899999999999997653221    1    112


Q ss_pred             cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHH
Q 009523          337 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       337 ~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t-l~~r~~~~~~~a~~la~~L  415 (532)
                      .+..+++.|+||.++.+| .+.||++++++.++.+......................++. .....+...++.+.+.+.|
T Consensus       222 ~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l  300 (375)
T d1o4sa_         222 FDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERL  300 (375)
T ss_dssp             STTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeechhhccCCc-cccccccccccchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHH
Confidence            345699999999998555 56899999999988887766555554444444333333222 1222333445566677777


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccccccCccccccCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL  494 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~-~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~  494 (532)
                      ++. ++. +..|.                .|.++|++++++. +...++   ++..++.+..|..+.             
T Consensus       301 ~~~-g~~-~~~p~----------------gg~f~~~~~~~~~~~~~~~l---l~~~gV~v~pG~~F~-------------  346 (375)
T d1o4sa_         301 KKM-GVK-FVEPE----------------GAFYLFFKVRGDDVKFCERL---LEEKKVALVPGSAFL-------------  346 (375)
T ss_dssp             HHT-TCC-CCCCS----------------BSSEEEEECSSCHHHHHHHH---HHHHCEECEEGGGGT-------------
T ss_pred             Hhc-Cce-EecCC----------------ccEEEEEECCCCHHHHHHHH---HHhCCEEEEEccccC-------------
Confidence            765 231 22221                4668899998642 222333   333467776664431             


Q ss_pred             CHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          495 SQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       495 ~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                                .+++||||++..  +.++.++.|+++|+
T Consensus       347 ----------~~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         347 ----------KPGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             ----------CTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ----------CCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence                      257999999852  22344455555554

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=1.5e-21  Score=203.36  Aligned_cols=282  Identities=13%  Similarity=0.127  Sum_probs=179.1

Q ss_pred             HHHHHHHHHhhhC--------------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEE
Q 009523          203 TVVVEEKMSALEG--------------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  268 (532)
Q Consensus       203 ~~~Le~~lA~l~g--------------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v  268 (532)
                      ..+|++++|+++.              .+++++++++++|+..++.+++++||+|++++|+|....    ..++..|+++
T Consensus        74 ~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~~  149 (412)
T d1bw0a_          74 SPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE----TVCKAYGIGM  149 (412)
T ss_dssp             CHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEE
T ss_pred             CHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhh----hhhhccCccc
Confidence            4567777776541              135566666669999999999999999999999998754    3445568887


Q ss_pred             EEeCC-------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc--cc--
Q 009523          269 TVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--KA--  334 (532)
Q Consensus       269 ~~vd~-------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~--~~--  334 (532)
                      +.++.       .+++++++++.+ +++++++++|+||||.+.+   +++|+++|++++++||+||+|......  .+  
T Consensus       150 ~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~  228 (412)
T d1bw0a_         150 HFYNCRPENDWEADLDEIRRLKDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNA  228 (412)
T ss_dssp             EEEEEEGGGTTEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTC
T ss_pred             cccccccccccchhhHHHHhhhhc-cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcc
Confidence            77653       268899998887 7999999999999999987   567888888999999999998653211  00  


Q ss_pred             -c-------ccCCcEEEECCccccCCCCCcEEEEEEeCh------HHHHHHHHHhhhcCCCccHHHHHHHHHh----HHH
Q 009523          335 -L-------SLGADLVLHSATKFIGGHNDVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIRG----MKT  396 (532)
Q Consensus       335 -l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~------~li~~l~~~~~~~G~~~~~~~a~l~l~~----l~t  396 (532)
                       .       ....-+++.|+||.++.+|. +.||+++++      .++...........+...+..+.++...    -+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (412)
T d1bw0a_         229 TFTSVADFETTVPRVILGGTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEH  307 (412)
T ss_dssp             CCCCTTSSCCSCCEEEEEESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHH
T ss_pred             ccccccccccccccccccccCccCccCCC-CcccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccc
Confidence             0       01123778899999987774 567777643      3333333333333333333322222211    123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----CHHHHHHHHHHc-CCCc
Q 009523          397 LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG----DLTATIKFIDAL-KIPY  471 (532)
Q Consensus       397 l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g----~~~~~~~~l~~L-~~~~  471 (532)
                      +....++..++++.+.+.|.+.+++. +..|.                .|..++..++.    +......|.+.| +..+
T Consensus       308 ~~~~~~~~~~~r~~~~~~l~~~~g~~-~~~p~----------------gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~g  370 (412)
T d1bw0a_         308 LDQIVAKIEESAMYLYNHIGECIGLA-PTMPR----------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEEN  370 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCC----------------BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHC
T ss_pred             cccccchhHHHHHHHHHHHHHhcCce-ecCCC----------------CceEEEEeCChhhcCCCCCHHHHHHHHHHhCC
Confidence            34444555677778888888776653 32332                46677877751    111222333332 2336


Q ss_pred             eeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHh
Q 009523          472 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALH  530 (532)
Q Consensus       472 i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~  530 (532)
                      +.+..|..+                      | .+++||||++..+  .++-++.|+++|+
T Consensus       371 V~v~PG~~F----------------------g-~~g~iRis~~~~~e~l~eal~Rl~~~l~  408 (412)
T d1bw0a_         371 VQVLPGTIF----------------------H-APGFTRLTTTRPVEVYREAVERIKAFCQ  408 (412)
T ss_dssp             EECEEGGGG----------------------T-CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccc----------------------C-CCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            666666432                      2 2579999998532  2333455556554

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2e-21  Score=200.62  Aligned_cols=287  Identities=11%  Similarity=0.108  Sum_probs=180.2

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          203 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      ..+|++++|+++    |.    +++++++++++++..++.+++.+||.|+++.|.|.....    .+...|..+..++..
T Consensus        66 ~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~----~~~~~g~~~~~~~~~  141 (389)
T d2gb3a1          66 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNA----FAKIAGVKLIPVTRR  141 (389)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHHTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccc----cccccCccccccccc
Confidence            556777777654    42    345555555699999999999999999999999987553    344456666555432


Q ss_pred             ------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc------ccccCC
Q 009523          275 ------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------ALSLGA  339 (532)
Q Consensus       275 ------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~------~l~~ga  339 (532)
                            +.+.+...+.+ +++++++++|+||||.+.+   +++|.++|+++++++|+||+|.......      ......
T Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~  220 (389)
T d2gb3a1         142 MEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK  220 (389)
T ss_dssp             GGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred             cccccchhhhhhhhccc-CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccc
Confidence                  33455566665 7999999999999999987   6788899999999999999976532211      112234


Q ss_pred             cEEEECCccccCCCCCcEEEEEEeChHHH-HHHHHHhhhcCCCccHHHHHHHHHhH---H-HHHHHHHHHHHHHHHHHHH
Q 009523          340 DLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGALNPNAAYLIIRGM---K-TLHLRVQQQNSTALRMAKI  414 (532)
Q Consensus       340 Divv~S~sK~lgg~gd~~gG~lv~~~~li-~~l~~~~~~~G~~~~~~~a~l~l~~l---~-tl~~r~~~~~~~a~~la~~  414 (532)
                      .+++.|++|.++.+| .+.||++++++.+ +.+..... .....+.....++...+   + .+....+...++++.+.+.
T Consensus       221 ~~v~~s~sK~~~~~G-lRiG~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  298 (389)
T d2gb3a1         221 VVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQ-GRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKK  298 (389)
T ss_dssp             EEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHH-HSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCcc-cceeeeeccchhHHHHHhhhhh-ccccccccccccccccccccchhcccccccccccchhhhhh
Confidence            688999999999877 4578888866544 33333332 23333333333222222   2 2333344555777888999


Q ss_pred             HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--HHHHHHHHHHcCC--CceeecCCCcccccccCcccc
Q 009523          415 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--LTATIKFIDALKI--PYIAPSFGGCESIVDQPAIMS  490 (532)
Q Consensus       415 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~--~~~~~~~l~~L~~--~~i~vs~G~~~sl~~~pa~~s  490 (532)
                      |++++... +..|.                .|.++|++++..  .+.+.++++...+  .++.+..|..+..  .     
T Consensus       299 L~~~~~~~-~~~p~----------------~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~--~-----  354 (389)
T d2gb3a1         299 LEEHGLKR-FTKPS----------------GAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYL--T-----  354 (389)
T ss_dssp             HHHTTCCC-BCCCS----------------BSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCS--S-----
T ss_pred             hhhhcccc-ccCCC----------------ceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCccccc--C-----
Confidence            99875432 22221                467899998753  2223344443222  2344444432211  0     


Q ss_pred             ccCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHhh
Q 009523          491 YWDLSQSERLKYGIMDNLVRFSFGVED--FEDLKADVLQALHA  531 (532)
Q Consensus       491 ~~~~~~~~~~~~gi~~~~IRlSvG~ed--~~dli~dL~~AL~~  531 (532)
                                 .|..++++||+++..+  .++.++.|.++|++
T Consensus       355 -----------~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         355 -----------PGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             -----------TTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence                       1234689999998532  23445667777764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=7.9e-22  Score=200.12  Aligned_cols=272  Identities=15%  Similarity=0.144  Sum_probs=184.6

Q ss_pred             CCCCCchhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEE
Q 009523          195 YGRYGNPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  269 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga----~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~  269 (532)
                      ..+|+++...+|++++|++++.    .+.|++++|+ +++.+++    ++||+|++.+|+|.+..    ..++..|+++.
T Consensus        50 ~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~----~~~d~v~i~~P~y~~~~----~~~~~~g~~~v  121 (334)
T d2f8ja1          50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM----LMFDRSVFFPPTYSCYR----IFAKAVGAKFL  121 (334)
T ss_dssp             GGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHH----HHSSEEEECSSCCHHHH----HHHHHHTCCEE
T ss_pred             hcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHh----hhccccccccccccccc----cchhccCCccc
Confidence            3445666778899999998863    3346666666 7776654    46799999999998754    34455688888


Q ss_pred             EeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc----ccccccCCcEEEEC
Q 009523          270 VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLGADLVLHS  345 (532)
Q Consensus       270 ~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~----~~~l~~gaDivv~S  345 (532)
                      .++.++-....++..+ +++++++++|+||||.+.+.++|.+++ ++++++|+|+.+.....    .........+++.|
T Consensus       122 ~v~~~~~~~~~~~~~~-~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S  199 (334)
T d2f8ja1         122 EVPLTKDLRIPEVNVG-EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRT  199 (334)
T ss_dssp             ECCCCTTSCCCCCCCC-TTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEE
T ss_pred             cccccccccccccccc-cceEEEecccccccceeecHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEec
Confidence            8876532222223333 689999999999999999998887764 57899999999654221    11222344589999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAA---YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a---~l~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                      +||.++.+| .+.|+++++++++++++..+...+  .+....   ...+...+.+...++...++++.+.+.|++++ + 
T Consensus       200 ~SK~~~~~G-~R~G~~~~~~~~i~~l~~~~~~~~--~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-  274 (334)
T d2f8ja1         200 FSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPFN--VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-Y-  274 (334)
T ss_dssp             STTTSSCTT-TCEEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-C-
T ss_pred             Cccccchhh-hhhhhcccchHHHHHHHHhhcccc--cchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC-C-
Confidence            999998766 568999999999999887765433  333332   23334445555666677788888999998863 3 


Q ss_pred             EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhc
Q 009523          423 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY  502 (532)
Q Consensus       423 ~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~  502 (532)
                      ++. |.                .|+++++.++.  .....+.+.|...|+.+..                          
T Consensus       275 ~~~-~~----------------~g~f~~~~~~~--~~~~~~~~~L~~~GI~vr~--------------------------  309 (334)
T d2f8ja1         275 RIT-DS----------------RGNFVFVFMEK--EEKERLLEHLRTKNVAVRS--------------------------  309 (334)
T ss_dssp             EEC-CC----------------CSSEEEEECCH--HHHHHHHHHHHHTTEECEE--------------------------
T ss_pred             eEC-CC----------------CceEEEEECCC--CCHHHHHHHHHHCCCEECC--------------------------
Confidence            232 21                35678887764  4567777777665655421                          


Q ss_pred             CCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          503 GIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       503 gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                        ..++||||+|.  .++ .+.+.++|+.
T Consensus       310 --~~~~vRis~g~--~ee-~~~l~~~l~~  333 (334)
T d2f8ja1         310 --FREGVRITIGK--REE-NDMILRELEV  333 (334)
T ss_dssp             --ETTEEEEECCC--HHH-HHHHHHHHHH
T ss_pred             --CCCeEEEEcCC--HHH-HHHHHHHHhc
Confidence              14689999984  222 3556666653

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.89  E-value=3.1e-21  Score=201.57  Aligned_cols=280  Identities=15%  Similarity=0.167  Sum_probs=180.9

Q ss_pred             CCCCch-hHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          196 GRYGNP-TTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       196 ~R~~~p-~~~~Le~~lA~l~----ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .+|+.+ ...+||++||+++    |.     +++++++++++|+..++++++++||.|++++|.|+.....    +...|
T Consensus        60 ~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~----~~~~g  135 (418)
T d2r5ea1          60 NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPM----VKAAG  135 (418)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHH----HHHcC
Confidence            344433 2456666666653    42     2455555555999999999999999999999999986543    33456


Q ss_pred             cEEEEeCC---------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCC
Q 009523          266 ITATVIDP---------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  327 (532)
Q Consensus       266 v~v~~vd~---------------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a  327 (532)
                      .+++.++.               .+.+++.+.... +++++++++|+||||.+++   +++|+++|+++|+++|+|++|.
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~  214 (418)
T d2r5ea1         136 GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE  214 (418)
T ss_dssp             CEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             CeEEEEEecccccccchhhhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchh
Confidence            66655532               256788877766 7999999999999999998   4568888999999999999976


Q ss_pred             CCCcc-----cccc----cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--
Q 009523          328 TPLNQ-----KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--  396 (532)
Q Consensus       328 ~~~~~-----~~l~----~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t--  396 (532)
                      .....     ....    ....+++.|+||.++.+| .+.||+++++++++.+...........+...+..+...+..  
T Consensus       215 ~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~  293 (418)
T d2r5ea1         215 HMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETEL  293 (418)
T ss_dssp             TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHH
T ss_pred             hhccCCCccccccccccccceeeeeecCCccccCCC-cccccccccchhhhhhhhcccccccccccchhhhccccccccc
Confidence            43211     1111    223488999999998665 46899999999999888766554444444433333322221  


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-----------C
Q 009523          397 ---------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-----------D  456 (532)
Q Consensus       397 ---------l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-----------~  456 (532)
                               +....+....+++.+.+.|++. ++. +..|.                .|.++|+.+++           +
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~P~----------------gg~f~~~~~~~~~~~~~~~~~~~  355 (418)
T d2r5ea1         294 KRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN-PTVPQ----------------GGYFMVADWSSLDSKVDLTQETD  355 (418)
T ss_dssp             TTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCE-EEECS----------------BSSEEEEECGGGSTTCCGGGCCC
T ss_pred             cccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCc-ccCCC----------------ceeEEEEEcccccccccchhccc
Confidence                     2233344456677788888875 443 33342                46678887752           1


Q ss_pred             HHHHHHHHHHc-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          457 LTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       457 ~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                      ......|.+.| +..++.+..|..+..-.  .            ...  .+++||||++.
T Consensus       356 ~~~~~~~~~~ll~~~gV~v~PG~~F~~~~--~------------~~~--g~~~iRis~~~  399 (418)
T d2r5ea1         356 ARKDYRFTKWMTKSVGLQGIPPSAFYSEP--N------------KHL--GEDFVRYCFFK  399 (418)
T ss_dssp             SSHHHHHHHHHHHHHSEECBCGGGGSCGG--G------------HHH--HTTEEEEECCS
T ss_pred             ccCHHHHHHHHHHHCCEEEeCchhhCCCC--C------------ccC--CCCEEEEEecC
Confidence            12233444433 33467777775542110  0            000  25799999976

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.1e-20  Score=195.71  Aligned_cols=284  Identities=11%  Similarity=0.130  Sum_probs=212.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+...+||+.||+++|.+.+++++||+.|+..++.++.+++|.|++....|.+....    .+..+.++..++.+|++++
T Consensus        82 ~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g----~~~~~~~~~~~~hnd~~~l  157 (383)
T d1bs0a_          82 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHL  157 (383)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHH
T ss_pred             chHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhc----cccCCCcceEecchHHHHH
Confidence            477899999999999999999999999999999999999999999999988875533    3445678888899999999


Q ss_pred             HHhhcCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-------cccccCCcEEEECCcccc
Q 009523          280 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLGADLVLHSATKFI  350 (532)
Q Consensus       280 e~al~~~--~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-------~~l~~gaDivv~S~sK~l  350 (532)
                      ++.+...  +.++|++|++++++|.+.|+++|.++|++||++++|||+++.+..-       .......|+++.+++|.+
T Consensus       158 e~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~  237 (383)
T d1bs0a_         158 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF  237 (383)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred             HHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc
Confidence            9988542  4789999999999999999999999999999999999998765431       122345678999999999


Q ss_pred             CCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhCCCceE
Q 009523          351 GGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAHPKVKR  423 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl-----~~r~~~~~~~a~~la~~L~~~p~v~~  423 (532)
                      |..    ||++.++.++++.++....  .++..++|..+..+...++.+     ..+.++..++..++.+.|.+.+.  .
T Consensus       238 g~~----Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~--~  311 (383)
T d1bs0a_         238 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF--T  311 (383)
T ss_dssp             SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC--E
T ss_pred             ccc----ccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC--c
Confidence            965    6899999999988876433  345556666555555454432     34455556777777777766542  1


Q ss_pred             EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcC
Q 009523          424 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG  503 (532)
Q Consensus       424 V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~g  503 (532)
                      + .++                .+.++.+.+. +.+.+..+.+.|...|+.++.      +..|+.      |        
T Consensus       312 ~-~~~----------------~s~Ii~v~~g-~~~~a~~~~~~L~~~Gi~v~~------~~~PtV------p--------  353 (383)
T d1bs0a_         312 L-ADS----------------CSAIQPLIVG-DNSRALQLAEKLRQQGCWVTA------IRPPTV------P--------  353 (383)
T ss_dssp             E-CSC----------------CSSBCCEEEE-SHHHHHHHHHHHHHTTEECCE------ECTTSS------C--------
T ss_pred             c-CCC----------------CCCEEEEEEC-CHHHHHHHHHHHHHCCceEEE------EcCCCC------C--------
Confidence            1 111                2346666664 445666777777666765543      223431      1        


Q ss_pred             CCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          504 IMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       504 i~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .....|||++...++++.|+.+.++|+.
T Consensus       354 ~g~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         354 AGTARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            1245799999999999999999998874

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.88  E-value=7.3e-21  Score=199.63  Aligned_cols=291  Identities=14%  Similarity=0.124  Sum_probs=181.8

Q ss_pred             CCch-hHHHHHHHHHhhh----C----C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCc
Q 009523          198 YGNP-TTVVVEEKMSALE----G----A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  266 (532)
Q Consensus       198 ~~~p-~~~~Le~~lA~l~----g----a--~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv  266 (532)
                      |+++ ...+||++||+++    |    .  +++++++++++|+..++.++++|||+|+++.|.|+.....+   ....|+
T Consensus        80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~---~~~~g~  156 (431)
T d1m7ya_          80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDL---KWRTGV  156 (431)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHT---TTTTCC
T ss_pred             CcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHH---HHhcCc
Confidence            4443 2557888888764    2    1  24555555569999999999999999999999998755322   223477


Q ss_pred             EEEEeCC-------CCHHHHHHhhcC-----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc
Q 009523          267 TATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN  331 (532)
Q Consensus       267 ~v~~vd~-------~dle~Le~al~~-----~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~  331 (532)
                      +++.++.       .|++.+++++++     .+++++++++|+||||.+.+   +++|+++|+++|+++|+||+|+....
T Consensus       157 ~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~  236 (431)
T d1m7ya_         157 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF  236 (431)
T ss_dssp             EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccccc
Confidence            7776653       266777766532     26899999999999999997   66788889999999999999764221


Q ss_pred             -----ccccc-------------cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHH--H
Q 009523          332 -----QKALS-------------LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI--I  391 (532)
Q Consensus       332 -----~~~l~-------------~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~--l  391 (532)
                           .....             ....+++.|+||.++.+| .+.|+++++++++..............++....++  +
T Consensus       237 ~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l  315 (431)
T d1m7ya_         237 SSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAML  315 (431)
T ss_dssp             SSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCC-CccceeccchhhhHHHHHHHhccccccccccchhhhhh
Confidence                 11111             112488999999998665 46889999887765554433334433333322211  1


Q ss_pred             HhH---H-HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-----CHHHHHH
Q 009523          392 RGM---K-TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-----DLTATIK  462 (532)
Q Consensus       392 ~~l---~-tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-----~~~~~~~  462 (532)
                      ...   + .+....++..++.+.+.+.|++ +++. +..|.                .|.++|++++.     ..+....
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~-~~~p~----------------gg~f~w~~l~~~~~~~~~~~~~~  377 (431)
T d1m7ya_         316 SDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGIS-CLNGN----------------AGLFCWVDMRHLLRSNTFEAEME  377 (431)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCE-ECCCC----------------SSSEEEEECGGGSSSSSHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcE-EecCC----------------ceeEEEEECccccccCcccCHHH
Confidence            111   1 1222223344556667777765 3443 22221                46688998863     1233334


Q ss_pred             HHHHc-CCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHhh
Q 009523          463 FIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALHA  531 (532)
Q Consensus       463 ~l~~L-~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~~  531 (532)
                      |.+.| +..++.+..|..+..                     ..++++||+++..+.   ++.++.|.++|++
T Consensus       378 l~~~ll~~~gV~v~PG~~F~~---------------------~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         378 LWKKIVYEVHLNISPGSSCHC---------------------TEPGWFRVCFANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             HHHHHHHTSCEECEEGGGGTC---------------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEEeccccCC---------------------CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            44443 345777766654320                     125799999985443   4445666666653

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.9e-21  Score=203.17  Aligned_cols=285  Identities=14%  Similarity=0.115  Sum_probs=179.0

Q ss_pred             HHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga-----~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ...|+++||+++    |.     +++++++++++|+..++.+++.+||+|++++|.|.....    ..+..|.++..++.
T Consensus        82 ~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~----~~~~~g~~~~~~~~  157 (420)
T d1vp4a_          82 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN----AFRQYLANFVVVPL  157 (420)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHTTTCEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhH----HHHHHhhhcccccc
Confidence            456777776654    32     234555555699999999999999999999999987543    34556777776653


Q ss_pred             C----CHHHHHHhhc--------CCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc----c-
Q 009523          274 A----DMEGLEAALN--------NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K-  333 (532)
Q Consensus       274 ~----dle~Le~al~--------~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~----~-  333 (532)
                      +    |++.++..+.        ...++++++++|+||||.+++   +++|+++|+++++++|+|++|......    . 
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~  237 (420)
T d1vp4a_         158 EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDP  237 (420)
T ss_dssp             ETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCC
T ss_pred             cccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccc
Confidence            2    4555543321        113556778899999999987   568899999999999999998653221    1 


Q ss_pred             ---ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH------HHHHHHHHH
Q 009523          334 ---ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQ  404 (532)
Q Consensus       334 ---~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~------tl~~r~~~~  404 (532)
                         ....+..+++.|++|+++ .| .+.||+++++++++.+.+.....+...+....+.+...+.      .+....+..
T Consensus       238 ~~~~~~~~~~i~~~s~sk~~~-~G-~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~  315 (420)
T d1vp4a_         238 IFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELY  315 (420)
T ss_dssp             HHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHH
T ss_pred             ccccccccceeEEeccccccc-cc-cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHh
Confidence               112345578888999886 33 5789999999999988876665554444444333333222      122222333


Q ss_pred             HHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009523          405 NSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE  480 (532)
Q Consensus       405 ~~~a~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~  480 (532)
                      .++...+.+.|++    .|++. +..|.                .|.++|+.++++ .+...+.+.|+..++.+..|..+
T Consensus       316 ~~~~~~~~~~L~~~~~~~~g~~-~~~p~----------------gg~f~~~~~~~~-~d~~~~~~~l~~~gV~v~PG~~F  377 (420)
T d1vp4a_         316 RRKRTVMLNALEEYFSDIPGVK-WVKSE----------------GGLFIWLTLPEG-FDTWEMFEYAKRKKVFYVPGRVF  377 (420)
T ss_dssp             HHHHHHHHHHHHHHSTTSTTCE-ECCCS----------------BSSEEEEECCTT-CCTTTTHHHHHHHTEECEEGGGG
T ss_pred             hhhcccchhhhhhhhccCCCcE-EecCC----------------ceEEEEEECCCC-CCHHHHHHHHHHCCeEEEechhh
Confidence            3444455555544    34442 22221                466889999743 12223344444457777777554


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH---HHHHHHHHh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL---KADVLQALH  530 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dl---i~dL~~AL~  530 (532)
                      ...                   +-..++||||++..+.+++   ++.|.++|+
T Consensus       378 ~~~-------------------~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~  411 (420)
T d1vp4a_         378 KVY-------------------DEPSPSMRLSFCLPPDEKIVEGIKRLREVVL  411 (420)
T ss_dssp             CTT-------------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             CCC-------------------CCCCCEEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence            311                   1235799999987555544   555666664

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.88  E-value=3.2e-21  Score=199.98  Aligned_cols=285  Identities=12%  Similarity=0.077  Sum_probs=179.1

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC
Q 009523          203 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  274 (532)
Q Consensus       203 ~~~Le~~lA~l~----g----a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~  274 (532)
                      ..+||+++|+++    |    .++.++++++++++..++.+++++||+|++++|+|.....    .+...|.++..++.+
T Consensus        73 ~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~----~~~~~g~~~~~v~~~  148 (403)
T d1wsta1          73 FTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQ----AFKYYDPEFISIPLD  148 (403)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH----HHHTTCCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhH----HHhhccccceeEeec
Confidence            566777777764    3    2445556666699999999999999999999999987553    345567776666432


Q ss_pred             ----CHHH-------HHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCc----ccc--
Q 009523          275 ----DMEG-------LEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN----QKA--  334 (532)
Q Consensus       275 ----dle~-------Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~----~~~--  334 (532)
                          +...       ..+..++ .+.++++.+|+||||.+.+.   ++|+++|++||++||+||+|.....    ..+  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~  227 (403)
T d1wsta1         149 DKGMRVDLLEEKLEELRKQGKR-VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIK  227 (403)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCC-CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGG
T ss_pred             ccCCccccccccchhhhhcccc-ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCccc
Confidence                2221       1222223 46788889999999999985   5788889999999999999864321    111  


Q ss_pred             --cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh-----HHH-HHHHHHHHHH
Q 009523          335 --LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-----MKT-LHLRVQQQNS  406 (532)
Q Consensus       335 --l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~-----l~t-l~~r~~~~~~  406 (532)
                        ...+..+++.|+||.++ +| .+.||+++++++++.+...........+..........     .+. +....+....
T Consensus       228 ~~~~~~~~i~~~S~SK~~~-~G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (403)
T d1wsta1         228 HFDDYGRVIYLGTFSKILA-PG-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKP  305 (403)
T ss_dssp             GGCSSSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEccccceec-Cc-ccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHH
Confidence              13456799999999996 43 56899999999998877655444333343332221111     111 2222334445


Q ss_pred             HHHHHHHHHHhC-CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccccc
Q 009523          407 TALRMAKILEAH-PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~-p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      +.+.+.+.|.++ +....+..|.                .|.++|++++.+ .....+.+.|...++.+..|+.+...  
T Consensus       306 ~~~~~~~~L~~~~~~~~~~~~p~----------------gg~~~~~~~~~~-~~~~~~~~~l~~~gV~v~pg~~f~~~--  366 (403)
T d1wsta1         306 RRDAMLEALEEYMPEGVEWTKPE----------------GGMFVRVTLPEG-IDTKLMMERAVAKGVAYVPGEAFFVH--  366 (403)
T ss_dssp             HHHHHHHHHHHHCCTTCEECCCS----------------BSSEEEEECCTT-CCTTTTHHHHHHTTEECEEGGGGSTT--
T ss_pred             HHHHHHHHHHhhccCCeEEeCCC----------------ceeEEEEECCCC-CCHHHHHHHHHHCCEEEEechhhcCC--
Confidence            566667777654 2211232232                477899999853 22334445555557777777554311  


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH  530 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~  530 (532)
                                       +-.++++||+++..+.   ++.++.|.++|+
T Consensus       367 -----------------~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~  397 (403)
T d1wsta1         367 -----------------RDKKNTMRLNFTYVPEETIREGVRRLAETIK  397 (403)
T ss_dssp             -----------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence                             1135799999986444   344445555554

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.5e-21  Score=200.42  Aligned_cols=308  Identities=16%  Similarity=0.094  Sum_probs=194.5

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHH----hccCCCEEEEcCCCCcchHHHHHHhcccCC
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMG  265 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~a----ll~~Gd~VIv~~~~y~~t~~~~~~~l~~~G  265 (532)
                      .|.+++......++.|+++|+++|++  +.++++|+++++..++..    ..++|+.|++....|+.....+ ..++..|
T Consensus        35 ~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g  113 (376)
T d1eg5a_          35 AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKG  113 (376)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcC
Confidence            34444445556677899999999984  677888888998888754    4577888888877776655544 4567779


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEECCCCCC-Cccccccc
Q 009523          266 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATP-LNQKALSL  337 (532)
Q Consensus       266 v~v~~vd~~-----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~--~gi~lIvDet~a~~-~~~~~l~~  337 (532)
                      ++++.++.+     |++++++++++ +|++|++.+++|+||.+.|++++.++++.  .++++++|.++..+ .+.+..+.
T Consensus       114 ~~v~~vp~~~~~~id~~~l~~~i~~-~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~  192 (376)
T d1eg5a_         114 FKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL  192 (376)
T ss_dssp             CEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT
T ss_pred             CEEEEEcCCCCCeECHHHHHHhcCC-CceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccccccccccc
Confidence            999988643     79999999998 79999999999999999999999999855  49999999997665 44566678


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-------hhcCCCccHHHHHHHHHhHHH----HHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMKT----LHLRVQQQNS  406 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-------~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~  406 (532)
                      ++|+++.|++||+|++|   .|+++.+++..  ++...       ....+..+.............    ..........
T Consensus       193 ~~D~~~~s~~K~~gp~G---~~~l~~~~~~~--~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (376)
T d1eg5a_         193 EVDYASFSAHKFHGPKG---VGITYIRKGVP--IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEK  267 (376)
T ss_dssp             CCSEEEEEGGGGTSCTT---CEEEEECTTSC--CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CccceecccceeecCCC---ceeEEeccCcc--cCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhh
Confidence            99999999999998877   45555554321  11110       011111222221111111111    1112223334


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccC
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP  486 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~p  486 (532)
                      ...++.+.|......  +..+..             .....++.+.+++.  ....+...|...++.++.|..+.    +
T Consensus       268 ~~~~~~~~l~~~~~~--~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~L~~~gI~vr~G~~c~----~  326 (376)
T d1eg5a_         268 LRSKLVSGLMNLGAH--IITPLE-------------ISLPNTLSVSFPNI--RGSTLQNLLSGYGIYVSTSSACT----S  326 (376)
T ss_dssp             HHHHHHHHHHTTTCE--ECSCTT-------------SBCTTEEEEECTTC--CHHHHHHHHHHTTEECBC----------
T ss_pred             hhhhhcccccccccc--cccccc-------------ccccceeeeccCCC--CHHHHHHHHhhCCeEEeCcchhc----C
Confidence            455566666654332  111111             11345778888752  23344444555678888875432    1


Q ss_pred             ccccccCCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          487 AIMSYWDLSQSERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       487 a~~s~~~~~~~~~~~~gi~----~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .    .........++|+.    .+.||+|++..++++.|+.+.++|++
T Consensus       327 ~----~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~  371 (376)
T d1eg5a_         327 K----DERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE  371 (376)
T ss_dssp             ----------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             C----ccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1    11122234556765    36899999998877777777777765

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.87  E-value=2.7e-20  Score=195.14  Aligned_cols=284  Identities=14%  Similarity=0.154  Sum_probs=176.3

Q ss_pred             HHHHHHHHHhhh----C------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          203 TVVVEEKMSALE----G------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       203 ~~~Le~~lA~l~----g------a~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..+||++||+++    |      .++.++++++++++..++.+++.+||+|+++.|+|......   +....|+++..++
T Consensus        85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~---~~~~~g~~~v~v~  161 (428)
T d1iaya_          85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD---LRWRTGVQLIPIH  161 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH---TTTTTCCEEEEEC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHH---HHHhcCCeEEEee
Confidence            457888888764    2      23455555556999999999999999999999999885532   2224588888876


Q ss_pred             CC-------CHHHHHHhh-----cCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCccc----
Q 009523          273 PA-------DMEGLEAAL-----NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----  333 (532)
Q Consensus       273 ~~-------dle~Le~al-----~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~~----  333 (532)
                      .+       |+++++.++     ...++++|++++|+||||.+.+   +++|+++|++||++||+||+|.......    
T Consensus       162 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~  241 (428)
T d1iaya_         162 CESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFV  241 (428)
T ss_dssp             CCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCC
T ss_pred             cccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccccc
Confidence            42       566665433     1226899999999999999997   6788999999999999999976432100    


Q ss_pred             c-c-----------ccCCcEEEECCccccCCCCCcEEEEEEeC-hHHHHHHHHHhhhcCCCccHHHHHH-H-H---HhHH
Q 009523          334 A-L-----------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYL-I-I---RGMK  395 (532)
Q Consensus       334 ~-l-----------~~gaDivv~S~sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~~G~~~~~~~a~l-~-l---~~l~  395 (532)
                      + .           .....+++.|+||.++..| .+.|++++. +.+.+.++.... ++....+....+ + +   ..++
T Consensus       242 s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~a~l~~~~~~~  319 (428)
T d1iaya_         242 SIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSS-FGLVSTQTQYFLAAMLSDEKFVD  319 (428)
T ss_dssp             CHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHT-TSCCCHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhccccccceEEEEecCCCcccCCC-cccccccccccchhhhhhhhhc-ccccccccccchhhhhhhhcccc
Confidence            0 0           1123488999999997665 457888875 455565555443 332222222111 1 1   1112


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-----CHHHHHHHHHHc-C
Q 009523          396 T-LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-----DLTATIKFIDAL-K  468 (532)
Q Consensus       396 t-l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-----~~~~~~~~l~~L-~  468 (532)
                      . +....+...++.+.+.+.|+.. ++. +..|.                .|.++|+.++.     .......|.+.| +
T Consensus       320 ~~~~~~~~~l~~r~~~~~~~L~~~-gi~-~~~p~----------------gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~  381 (428)
T d1iaya_         320 NFLRESAMRLGKRHKHFTNGLEVV-GIK-CLKNN----------------AGLFCWMDLRPLLRESTFDSEMSLWRVIIN  381 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCCS----------------SSSEEEEECGGGCSSSSHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHHHhC-CCE-EecCC----------------cceEEEEECccccccCCCCCHHHHHHHHHH
Confidence            1 2222333445566677777653 332 22121                46688998863     122333344433 3


Q ss_pred             CCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009523          469 IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH  530 (532)
Q Consensus       469 ~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~---~dli~dL~~AL~  530 (532)
                      ..++.+..|..+..                     -.++++|||++..+.   ++.+++|.++|.
T Consensus       382 ~~gV~v~PG~~F~~---------------------~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         382 DVKLNVSPGSSFEC---------------------QEPGWFRVCFANMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             TSCEECEEGGGGTC---------------------SSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEcchhcCC---------------------CCCCEEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            45777777654321                     125899999985443   345666667664

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.87  E-value=2.5e-21  Score=197.58  Aligned_cols=282  Identities=16%  Similarity=0.158  Sum_probs=177.5

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~-~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      ..+|+++...+|++.+|+++|.+ +.|++++|+ +++..++..+.  |+.+++..|.|.....    .....+..+..++
T Consensus        51 ~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~----~~~~~~~~~~~v~  124 (355)
T d1lc5a_          51 IERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGR----ALAQSGCEIRRWS  124 (355)
T ss_dssp             GGSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred             hccCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc--cccccccCCccceecc----ccccccccceeee
Confidence            45678887889999999999974 335555555 66666555443  3444555677754322    2222344444443


Q ss_pred             CC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCcc------ccccc
Q 009523          273 PA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSL  337 (532)
Q Consensus       273 ~~------dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~~------~~l~~  337 (532)
                      ..      ..+++++++.+ ++++|++++|+||||.+.+   +++|+++|+++++++|+|++|......      .....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~-~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~  203 (355)
T d1lc5a_         125 LREADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDN  203 (355)
T ss_dssp             CCGGGTTCCCTTHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTC
T ss_pred             eeccCCccceeeeeecccc-ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccccc
Confidence            21      23556677776 7999999999999999998   557778888999999999997643211      11123


Q ss_pred             CCcEEEECCccccCCCCCcEEEEEEeChHH-HHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHH
Q 009523          338 GADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       338 gaDivv~S~sK~lgg~gd~~gG~lv~~~~l-i~~l~~~~~~~G~~~~~~~a~l~l~~l~---tl~~r~~~~~~~a~~la~  413 (532)
                      +..+++.|+||.++-+| .+.||++++++. .+.++.....  ...+......+...++   .+....++..++.+++.+
T Consensus       204 ~~~i~~~S~SK~~~l~G-lR~G~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d1lc5a_         204 PHIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMP--WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQ  280 (355)
T ss_dssp             TTEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCT--TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeccccccccccc-ccccceeccchhhhHHHHhhcCC--ccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence            45689999999998555 467888887654 4555544322  2344454444444433   344555566677788888


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      .|.+.+.+. + +|.                .|+++++.++.+.   ..+.+.|...++.+..|..+.            
T Consensus       281 ~l~~~~~~~-~-~p~----------------~~~f~~~~~~~~~---~~~~~~L~~~gv~vr~~~~f~------------  327 (355)
T d1lc5a_         281 ALCQLPLLT-V-YPG----------------RANYLLLRCERED---IDLQRRLLTQRILIRSCANYP------------  327 (355)
T ss_dssp             HHHTSTTEE-E-CCC----------------SSSEEEEEESCTT---CCHHHHHHTTTEECEECTTST------------
T ss_pred             HHhhcCCcE-E-CCC----------------CCEEEEEECCCCH---HHHHHHHHHCCcEEEeCccCC------------
Confidence            888876653 2 343                3678899987532   234444555577665553321            


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                               +...++||||+|.+   +.++.+.++|++
T Consensus       328 ---------~~~~~~iRis~~~~---~e~~~li~aL~~  353 (355)
T d1lc5a_         328 ---------GLDSRYYRVAIRSA---AQNERLLAALRN  353 (355)
T ss_dssp             ---------TCCTTEEEEECCCH---HHHHHHHHHHHH
T ss_pred             ---------CCCCCEEEEEeCCH---HHHHHHHHHHHH
Confidence                     22368999999842   223444455543

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.86  E-value=9.2e-20  Score=188.96  Aligned_cols=285  Identities=17%  Similarity=0.133  Sum_probs=205.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  277 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle  277 (532)
                      .+..++||++||+++|.+.+++++||..|+..++.++  .++||.|+.....|.+...    .++..+.++..++.+|++
T Consensus        89 ~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~----g~~ls~a~~~~f~Hnd~~  164 (396)
T d2bwna1          89 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIE----GIKRNAGPKRIFRHNDVA  164 (396)
T ss_dssp             BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHH----HHHHSCCCEEEECTTCHH
T ss_pred             chHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccch----hhhccccCceEeecchHH
Confidence            3678899999999999999999999999999999887  4688989888888876543    334456778888999999


Q ss_pred             HHHHhhc---CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc---------ccccCCcEEEEC
Q 009523          278 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  345 (532)
Q Consensus       278 ~Le~al~---~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~---------~l~~gaDivv~S  345 (532)
                      ++++.++   +.+.++|++|...+..|.+.|+++|.+++++||+.++|||+++.++.-.         .....+|+++.|
T Consensus       165 ~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gT  244 (396)
T d2bwna1         165 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGT  244 (396)
T ss_dssp             HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEE
T ss_pred             HhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeec
Confidence            8887764   2356899999999999999999999999999999999999977654311         112346999999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--~~G~~~~~~~a~l~l~~l~tl-----~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ++|.+|..    ||++++++++++.++....  .+.+.++|..+..+...++-+     ..+.++...+..++.+.|.+.
T Consensus       245 lsKa~g~~----Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         245 LAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             SSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc----ccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999965    6899999999999886443  456667777666555555432     222344456677777777653


Q ss_pred             CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH-cCCCceeecCCCcccccccCccccccCCCHH
Q 009523          419 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  497 (532)
Q Consensus       419 p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~-L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~  497 (532)
                      .      ++-.++             .+.++.+.+. +...+..+.+. |+..|+.++.      +..|+.      |  
T Consensus       321 g------~~~~~~-------------~spIvpv~ig-~~~~~~~~a~~lL~e~Gi~v~~------i~~PtV------p--  366 (396)
T d2bwna1         321 G------MPIIDH-------------GSHIVPVVIG-DPVHTKAVSDMLLSDYGVYVQP------INFPTV------P--  366 (396)
T ss_dssp             T------CCBCCC-------------SSSCEEEECC-CHHHHHHHHHHHHHHHCEECCE------ECTTTS------C--
T ss_pred             C------CCcCCC-------------CCCEEEEEeC-CHHHHHHHHHHHHHhCCEEEEE------ECCCcC------C--
Confidence            2      111111             2357888774 44555555544 3333544432      233431      1  


Q ss_pred             HHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          498 ERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       498 ~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                            .....|||++...++++.|+.+.++|++|
T Consensus       367 ------~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         367 ------RGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             ------TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             ------CCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence                  12457999999999999999999998863

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-20  Score=194.66  Aligned_cols=273  Identities=15%  Similarity=0.182  Sum_probs=176.9

Q ss_pred             HHHHHHHHHhhh----CCC-----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga~-----~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+|++.||+++    |.+     ++++++++++|+..++.+++.+||.|++++|.|+.....+    ...|.+++.++.
T Consensus        66 ~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~----~~~g~~~v~~~~  141 (418)
T d1w7la_          66 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSL  141 (418)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHH----HHcCCEeecccc
Confidence            556777777664    532     3445444559999999999999999999999998865433    344554443321


Q ss_pred             -----------------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc--
Q 009523          274 -----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--  331 (532)
Q Consensus       274 -----------------~dle~Le~al~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~--  331 (532)
                                       .|.+++....++ ++++|++++|+||||.+.+   +++|+++|+++++++|+|++|.....  
T Consensus       142 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~  220 (418)
T d1w7la_         142 KPGPIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG  220 (418)
T ss_dssp             EECC---CCSEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccccccccccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC
Confidence                             146667777766 6999999999999999987   56888889999999999999765321  


Q ss_pred             ---cccccc----CCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--------
Q 009523          332 ---QKALSL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--------  396 (532)
Q Consensus       332 ---~~~l~~----gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t--------  396 (532)
                         ......    ...+++.|+||.++.+| .+.||+++++++++.+++.........+......+...+..        
T Consensus       221 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  299 (418)
T d1w7la_         221 HQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  299 (418)
T ss_dssp             CCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTST
T ss_pred             CCCCCHHHccccccccceecccCccccCCC-CcccccccchhhhhhhccccccccccccchhhHHHHHHhhhcccccccc
Confidence               111111    23589999999998765 46899999999999988877655544454443333333322        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------------CHHHHH
Q 009523          397 ---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------------DLTATI  461 (532)
Q Consensus       397 ---l~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g------------~~~~~~  461 (532)
                         +....+...++++.+.+.|++. ++. +..|.                +|.++|++++.            +.....
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~P~----------------gg~f~~~~~~~~~~~~~~~~~~~~~~~~~  361 (418)
T d1w7la_         300 SSYFVQFPQAMQRCRDHMIRSLQSV-GLK-PLIPQ----------------GSYFLITDISDFKRKMPDLPGAVDEPYDR  361 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEECS----------------BSSEEEEECHHHHHHCCCCCCCTTCCHHH
T ss_pred             ccccccchhhhhhhhhhhhhhhhhc-CCc-ccCCC----------------ceeEEEEECcccccccchhccccccccHH
Confidence               2223344456667778888775 343 33332                46678888752            001123


Q ss_pred             HHHHH-cCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009523          462 KFIDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV  515 (532)
Q Consensus       462 ~~l~~-L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~  515 (532)
                      .|.+. |+..++.+..|..+....                ..+-.+++||||++.
T Consensus       362 ~~~~~ll~~~gV~v~PG~~F~~~~----------------~~~~~~~~iRis~~~  400 (418)
T d1w7la_         362 RFVKWMIKNKGLVAIPVSIFYSVP----------------HQKHFDHYIRFCFVK  400 (418)
T ss_dssp             HHHHHHHHHHCEECEEGGGGSCHH----------------HHTTSCSEEEEECCC
T ss_pred             HHHHHHHHHCCEEEEcchhhcCCC----------------ccCCCCCEEEEEEcC
Confidence            33333 334467777775542110                011236899999975

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8e-20  Score=188.47  Aligned_cols=279  Identities=14%  Similarity=0.103  Sum_probs=180.4

Q ss_pred             HHHHHHHHHhhh----CC----Cc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALE----GA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~----ga----~~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      ..+||+.+|+++    |.    ++ .++++++++++.+++++++++||.|++++|.|......    +...|..+..++.
T Consensus        65 ~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~  140 (382)
T d1u08a_          65 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA----IALSGGIVKRMAL  140 (382)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhh----hhhccccceeccc
Confidence            456777777654    42    33 55666666999999999999999999999999886543    3445554444432


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEECCCCCCCc-----cccc----
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-----QKAL----  335 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~dl---~~I~~la~~~gi~lIvDet~a~~~~-----~~~l----  335 (532)
                            .|++++++.+++ +++++++++||||||.+++.   ++|.++|.+++++++.|+.+.....     ....    
T Consensus       141 ~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~  219 (382)
T d1u08a_         141 QPPHFRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ  219 (382)
T ss_dssp             CTTTCCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH
T ss_pred             ccccccCCHHHHhhhhcc-CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccccccc
Confidence                  278999999887 79999999999999999985   5666778889999999999653221     1111    


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  411 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~t----l~~r~~~~~~~a~~l  411 (532)
                      .....+++.|+||.++.+| .+.||+++++++++.+.........+.+......+...++.    +....+...++++.+
T Consensus       220 ~~~~~i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l  298 (382)
T d1u08a_         220 LRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL  298 (382)
T ss_dssp             HHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred             ccCcEEEEeeccccccCCc-ccchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhh
Confidence            1223589999999998665 46899999999999887766555555555544444444432    222223333444555


Q ss_pred             HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHc-CCCceeecCCCcccccccCccc
Q 009523          412 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       412 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-~~~~~~~~l~~L-~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      .+.+.. .++. +..|.                +|..+|+.++. +......|.+.| +..++.+..|..+..  .    
T Consensus       299 ~~~~~~-~g~~-~~~p~----------------gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~--~----  354 (382)
T d1u08a_         299 VNALNE-SRLE-ILPCE----------------GTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA--D----  354 (382)
T ss_dssp             HHHTTS-SSCE-ECCCC----------------BSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS--S----
T ss_pred             hhhhcc-CCcE-EecCC----------------ceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCC--C----
Confidence            554432 2332 22221                46678998874 112233344433 445777777755431  0    


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV  525 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL  525 (532)
                                   +...+++|||++. +.+++.+.+
T Consensus       355 -------------~~~~~~~Ris~~~-~~e~l~~al  376 (382)
T d1u08a_         355 -------------PFPHKLIRLCFAK-KESTLLAAA  376 (382)
T ss_dssp             -------------CCCSCEEEEECCS-CHHHHHHHH
T ss_pred             -------------CCCCCEEEEEEeC-CHHHHHHHH
Confidence                         1135799999986 445544443

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.1e-19  Score=189.25  Aligned_cols=285  Identities=16%  Similarity=0.147  Sum_probs=207.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .+..++||++||+++|.+.+++++||++|+..++.++.+++|.|++....|.+....    +...+.++..+...|.+++
T Consensus        89 ~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G----~~~~~a~~~~~~~~d~~~l  164 (401)
T d1fc4a_          89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHH----HHTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcc----ccccCceEEEEcCCChHHH
Confidence            477889999999999999999999999999999999999999999999999886543    3344567777788888777


Q ss_pred             HHhhcC-----CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc---------ccccCCcEEEEC
Q 009523          280 EAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  345 (532)
Q Consensus       280 e~al~~-----~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~---------~l~~gaDivv~S  345 (532)
                      ++.++.     .++.+|++|+..+..|.+.|+++|.++|++||+++|+||+++.+..-.         .....+|+++.|
T Consensus       165 e~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~t  244 (401)
T d1fc4a_         165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEee
Confidence            776532     246799999999999999999999999999999999999976543211         111247899999


Q ss_pred             CccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCC
Q 009523          346 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPK  420 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l~~l~tl---~~r~~~~~~~a~~la~~L~~~p~  420 (532)
                      ++|.++|.   .||++.+++++++.++...  ..++..++|..+..+...++.+   +.+.++..++..++.+.+.....
T Consensus       245 l~Ka~gg~---~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~  321 (401)
T d1fc4a_         245 LGKALGGA---SGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF  321 (401)
T ss_dssp             SSSTTCSS---SCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccC---CcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCC
Confidence            99999765   3799999999998887543  2456667776666555555543   45567777888888888776532


Q ss_pred             ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHH
Q 009523          421 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL  500 (532)
Q Consensus       421 v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~  500 (532)
                      .  +    ..             ..+.++.+.+. +...+..+.+.|...|+.++.      +..|+.      |     
T Consensus       322 ~--~----~~-------------~~~pIv~v~~~-~~~~a~~~~~~L~~~Gi~v~~------i~~PtV------p-----  364 (401)
T d1fc4a_         322 T--L----AG-------------ADHAIIPVMLG-DAVVAQKFARELQKEGIYVTG------FFYPVV------P-----  364 (401)
T ss_dssp             C--B----CC-------------SSSSEEEEEEE-CHHHHHHHHHHHHHTTEECCE------ECTTSS------C-----
T ss_pred             c--c----CC-------------CCCCEEEEEEC-CHHHHHHHHHHHHHCCceEEe------ECCCCC------C-----
Confidence            1  0    00             12457777775 445666777777766665542      223431      1     


Q ss_pred             hcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          501 KYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       501 ~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                         .....||+++...++++.|+.+.++|++
T Consensus       365 ---~g~~~lRi~~~a~hT~edId~~v~al~e  392 (401)
T d1fc4a_         365 ---KGQARIRTQMSAAHTPEQITRAVEAFTR  392 (401)
T ss_dssp             ---TTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ---CCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence               1234699999987666666666666543

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.85  E-value=2.2e-20  Score=195.70  Aligned_cols=296  Identities=13%  Similarity=0.127  Sum_probs=182.8

Q ss_pred             CCCCCCCchhHHHHHHHHHhhh---CC----CcEEEeCCHH-HHHHHHHHHh--------ccCCCEEEEcCCCCcchHHH
Q 009523          193 FEYGRYGNPTTVVVEEKMSALE---GA----ESTVIMASGM-SASTVMLLAL--------VPAGGHIVTTTDCYRKTRIF  256 (532)
Q Consensus       193 ~~Y~R~~~p~~~~Le~~lA~l~---ga----~~~i~~sSG~-~Ai~~al~al--------l~~Gd~VIv~~~~y~~t~~~  256 (532)
                      |.|.........+|++.|+++.   |.    +..|++++|+ ++|.+++.+|        +.|||+||++.|.|......
T Consensus        92 y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~  171 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ  171 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred             eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH
Confidence            4444444455567888888876   31    2457777776 9999999998        56899999999999875433


Q ss_pred             HHHhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc-ccc
Q 009523          257 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KAL  335 (532)
Q Consensus       257 ~~~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~-~~l  335 (532)
                      . .++......+   + .|.+.+++++++ +++++++++||||||.+..       +-.+++.+|.|++|..+... -+.
T Consensus       172 ~-~~~~~~~~~~---~-~D~~~~~~~~~~-~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~  238 (425)
T d2hoxa1         172 T-KYFDKKGYVW---A-GNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKY  238 (425)
T ss_dssp             H-HHSCBTTEEE---E-EEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCS
T ss_pred             H-HHcCCCCCcc---C-CCHHHHHhhCCC-CceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhh
Confidence            3 2332222222   2 257778888877 7999999999999998742       23468999999998654221 122


Q ss_pred             ccCCcEEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH---------------HH
Q 009523          336 SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL---------------HL  399 (532)
Q Consensus       336 ~~gaDivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl---------------~~  399 (532)
                      ....+|++.|+||.+|-.| .+.||++. ++.+.+++.........+.+...+..++..++..               ..
T Consensus       239 ~~~~~Ivl~S~SK~fglaG-lRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~  317 (425)
T d2hoxa1         239 KADEDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF  317 (425)
T ss_dssp             CBCCSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHH
T ss_pred             hcCCeEEEEeCHHhccCcc-hheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            2345799999999998766 45777655 5667777776655444445555444444444321               11


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCC
Q 009523          400 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGG  478 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~  478 (532)
                      ..+...++...+.+.|.+.+.   ..++.++....+..........+..+|+....+ .+...+++.+   .++.+..|.
T Consensus       318 ~~~~l~~r~~~l~~~L~~~~~---~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e---~gI~v~pGs  391 (425)
T d2hoxa1         318 GFKKLRERWVNITALLDQSDR---FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQN---GRINTQNGV  391 (425)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSS---EECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHH---TTEECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHhcCC---ceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHh---CCEEEEech
Confidence            223334555666677766543   233333321111112222244566788887542 2234444443   466666664


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH  530 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~e--d~~dli~dL~~AL~  530 (532)
                      .+                      |..+++||||+...  +.+.+++.|++.++
T Consensus       392 ~F----------------------G~~~~yvRisl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         392 GF----------------------EASSRYVRLSLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             GG----------------------TSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             hc----------------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            42                      33468999999753  33667777777765

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=1.4e-19  Score=185.30  Aligned_cols=211  Identities=19%  Similarity=0.236  Sum_probs=166.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .|.+++||+++|+++|.+.+++++||++|+.+++.++ +++||+|+++..+|.++...+    ...|..++++|.+    
T Consensus        30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai----~~~g~~pv~~d~~~~~~  105 (376)
T d1mdoa_          30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI----VLLGANPVMVDVDRDTL  105 (376)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccch----hccccceeeeccccccc
Confidence            4889999999999999999999999999999999998 899999999999999877543    4457788887643    


Q ss_pred             --CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccccccC-CcEEEEC--Cccc
Q 009523          275 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHS--ATKF  349 (532)
Q Consensus       275 --dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~g-aDivv~S--~sK~  349 (532)
                        |+++|++++++ +|++|++   .|..|...|+++|.++|+++|+++|+|++++.+........| .|..+.|  .+|.
T Consensus       106 ~~d~~~l~~~i~~-~tkaIi~---~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~  181 (376)
T d1mdoa_         106 MVTPEHIEAAITP-QTKAIIP---VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKN  181 (376)
T ss_dssp             CBCHHHHHHHCCT-TEEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSS
T ss_pred             CCCHHHHHHhcCC-CCeEEEE---eCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCC
Confidence              89999999998 7999987   457899999999999999999999999998765433322211 2334555  5699


Q ss_pred             cCCCCCcEEEEEEeCh-HHHHHHHHHhh------------------------hcCCCccHHHHHHHHHhHHHHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGSG-KLVTQIRNLHH------------------------VLGGALNPNAAYLIIRGMKTLHLRVQQQ  404 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~-~li~~l~~~~~------------------------~~G~~~~~~~a~l~l~~l~tl~~r~~~~  404 (532)
                      ++.+.   ||+++.+. ++.++++..+.                        .....++...+++....++.+...+++.
T Consensus       182 l~~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r  258 (376)
T d1mdoa_         182 ITCAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARR  258 (376)
T ss_dssp             SCSSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCCCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHH
Confidence            98654   78777755 56666654432                        1123456677777788888888888889


Q ss_pred             HHHHHHHHHHHHhCCCc
Q 009523          405 NSTALRMAKILEAHPKV  421 (532)
Q Consensus       405 ~~~a~~la~~L~~~p~v  421 (532)
                      .+++..+.+.|.+.+.+
T Consensus       259 ~~~~~~~~~~L~~~~~~  275 (376)
T d1mdoa_         259 AAIAAQYHQAMADLPFQ  275 (376)
T ss_dssp             HHHHHHHHHHHHTSSCE
T ss_pred             hhhhhhhhhhccccccc
Confidence            99999999999987654

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.1e-19  Score=177.38  Aligned_cols=311  Identities=16%  Similarity=0.147  Sum_probs=187.4

Q ss_pred             ccccccCChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCC
Q 009523          171 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY  250 (532)
Q Consensus       171 sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y  250 (532)
                      |.|.+-++++.+++..+...+.-.|+  ++|...+||++||+++|.+++++++||++|+.++++++.++||.+++..+.|
T Consensus         6 ~~~~t~p~p~v~~A~~~a~~g~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~   83 (343)
T d1m6sa_           6 SDTVTKPTEEMRKAMAQAEVGDDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSH   83 (343)
T ss_dssp             CGGGCCCCHHHHHHHHTCCCCCGGGT--CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCH
T ss_pred             cccCCCCCHHHHHHHHhhhcCCcccC--CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceecccccc
Confidence            34444456665666544332222343  5799999999999999999999999999999999999999999999999887


Q ss_pred             cchHHHHHHhcccCCcEEEEeC----CCCHHHHHHhhcCC-----CeeE-EEEeCCCCCCCcccCH---HHHHHHHHhCC
Q 009523          251 RKTRIFIETVLPKMGITATVID----PADMEGLEAALNNN-----NVSL-FFTESPTNPFLRCVDV---KLVSDLCHKKG  317 (532)
Q Consensus       251 ~~t~~~~~~~l~~~Gv~v~~vd----~~dle~Le~al~~~-----~tkl-V~lesP~NptG~v~dl---~~I~~la~~~g  317 (532)
                      ..+..... .....+..+..++    ..|++.+++.+...     ++.. ++...++|+.|.+.|+   ++|+++|+++|
T Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g  162 (343)
T d1m6sa_          84 IFWYEVGA-MAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHG  162 (343)
T ss_dssp             HHHSSTTH-HHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred             ceeeeccc-ccccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcC
Confidence            65332111 1112233343333    23788888888642     2444 4445566788887764   57777789999


Q ss_pred             CEEEEECCCCCCCc------ccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHH--HHHH
Q 009523          318 AIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN--AAYL  389 (532)
Q Consensus       318 i~lIvDet~a~~~~------~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~--~a~l  389 (532)
                      +++++|+++.....      ........+..+.+.+|..++.   .+|++++..+.+......+...+......  .+..
T Consensus       163 ~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  239 (343)
T d1m6sa_         163 INVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAA  239 (343)
T ss_dssp             CEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHH
T ss_pred             eEEEeccccccccccccccchhhhcccccccccccccccccc---ccccccccHHHHhhhHhhCcccccccchhHHHHHh
Confidence            99999999653211      1111223445565566655554   36778888887776665544444333222  2222


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC
Q 009523          390 IIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI  469 (532)
Q Consensus       390 ~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~  469 (532)
                      ..........+.+...++..++.+.+.+..... ...|.                ..+++++.+++......+|.+.|..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~v~~~~~~~~~~a~~l~~~L~~  302 (343)
T d1m6sa_         240 GIIALTKMVDRLKEDHENARFLALKLKEIGYSV-NPEDV----------------KTNMVILRTDNLKVNAHGFIEALRN  302 (343)
T ss_dssp             HHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBC-CGGGC----------------CSSEEEEECTTSSSCHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCc-cCCCC----------------CceEEEEEeCCCcccHHHHHHHHHH
Confidence            222222222344445556666666666543321 11111                2468889887533445667777765


Q ss_pred             CceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHhh
Q 009523          470 PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALHA  531 (532)
Q Consensus       470 ~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed----~~dli~dL~~AL~~  531 (532)
                      .|+.++..                           .++.|||+++...    +|.+++.|++.+++
T Consensus       303 ~Gi~v~~~---------------------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         303 SGVLANAV---------------------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             HTEECEEE---------------------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            56544311                           2467999998754    45555555555543

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-19  Score=185.27  Aligned_cols=168  Identities=15%  Similarity=0.185  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHhhhCCCc--EE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC-----
Q 009523          201 PTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  272 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~--~i-~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd-----  272 (532)
                      ...+++++.|++++|.++  .| +++||++++++++..++.+||++++....+.+....  ......+..+..+.     
T Consensus        52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  129 (388)
T d1h0ca_          52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAV--DIGERIGARVHPMTKDPGG  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHH--HHHHHHC--CBCCBCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeec--cccccccccccccccCCcc
Confidence            457788999999999842  44 446788999999999999999999998888765432  22233333333332     


Q ss_pred             CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccccC
Q 009523          273 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  351 (532)
Q Consensus       273 ~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~lg  351 (532)
                      ..|.+++++.+...++++|++.+.+|.||.+.|+++|.++|+++|+++++|.+++.+ .+.+....|+|+++.|.+|+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~  209 (388)
T d1h0ca_         130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALN  209 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccccccc
Confidence            236777776665547999999999999999999999999999999999999998765 4566678899999999999999


Q ss_pred             CCCCcEEEEEEeChHHHHHHH
Q 009523          352 GHNDVLAGSISGSGKLVTQIR  372 (532)
Q Consensus       352 g~gd~~gG~lv~~~~li~~l~  372 (532)
                      |++.  +|+++.+++.++.+.
T Consensus       210 gp~g--~~~~~~~~~~~~~~~  228 (388)
T d1h0ca_         210 APPG--TSLISFSDKAKKKMY  228 (388)
T ss_dssp             CCTT--CEEEEECHHHHHHHT
T ss_pred             CCCc--eEEEeecHHHHHhhh
Confidence            8873  577888877766553

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.82  E-value=7.9e-19  Score=181.44  Aligned_cols=257  Identities=14%  Similarity=0.130  Sum_probs=191.9

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      ...|.++++|+++|+++|.+.+++++||+.|+.++++++ +++||+|+++..+|.++...    ....|.++.++|.+  
T Consensus        31 ~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~a----i~~~g~~p~~~d~~~~  106 (384)
T d1b9ha_          31 MGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQA----AQRLGAVTVPVDVDAA  106 (384)
T ss_dssp             TTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTT
T ss_pred             cCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccc----cccccccccccccccc
Confidence            346899999999999999999999999999999999987 79999999999999987644    34568888888743  


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccc--ccccCCcEEEECC--
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--ALSLGADLVLHSA--  346 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~--~l~~gaDivv~S~--  346 (532)
                          |++.+++.+.+ +|++|++   .+..|...|+++|.++|+++++++|+|++++.+...+  ......|+.+.|+  
T Consensus       107 ~~~~d~~~~~~~i~~-~tk~i~~---~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~  182 (384)
T d1b9ha_         107 TYNLDPEAVAAAVTP-RTKVIMP---VHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQN  182 (384)
T ss_dssp             TCCBCHHHHHHHCCT-TEEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCT
T ss_pred             ccccchhhhcccccc-ccccccc---ccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccc
Confidence                79999999988 7999865   6677999999999999999999999999987654332  2222246666665  


Q ss_pred             ccccCCCCCcEEEEEEeC-hHHHHHHHHHhhh-----------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009523          347 TKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV-----------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTA  408 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~-~~li~~l~~~~~~-----------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a  408 (532)
                      +|.++.+.   ||+++.+ +++.+.++..+..                 +...++.+.|.+++..|+.+...+++..+++
T Consensus       183 ~K~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~  259 (384)
T d1b9ha_         183 GKLMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERW  259 (384)
T ss_dssp             TSSSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cccccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhh
Confidence            89987654   6777664 5666666654321                 1234678888888899999999999999999


Q ss_pred             HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecC
Q 009523          409 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       409 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~  476 (532)
                      +.+.+.|.+.+.+.....+.....           ....+..|.++.. ...-..|++.|+..+|.+..
T Consensus       260 ~~y~~~L~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~  317 (384)
T d1b9ha_         260 TLLSRLLGAIDGVVPQGGDVRADR-----------NSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFA  317 (384)
T ss_dssp             HHHHHHHHTSTTCEECCCCTTCCB-----------CCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhhhhhcccccccccccccccc-----------cccccccceecccccccHHHHHHHHHHCCCCeee
Confidence            999999998887754333321111           1123455555532 23445677777766665543

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.82  E-value=2e-19  Score=185.68  Aligned_cols=169  Identities=15%  Similarity=0.140  Sum_probs=128.4

Q ss_pred             chhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh------ccCCCEEEEcCCCCcchHHHHHHh-cccCCcEEEE
Q 009523          200 NPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL------VPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATV  270 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~al------l~~Gd~VIv~~~~y~~t~~~~~~~-l~~~Gv~v~~  270 (532)
                      ....+++++++|+++|+  ++.+++++++++++.++...      ..+|+.|++.+..|++....+... .+...+.+..
T Consensus        69 ~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (404)
T d1qz9a_          69 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL  148 (404)
T ss_dssp             GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec
Confidence            35677899999999998  47888888898887766432      357888888888877654333332 2222233332


Q ss_pred             eCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccc
Q 009523          271 IDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       271 vd~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~  349 (532)
                      ....+++.+++++++ +|++|.+.+++|.||.++|+++|+++|+++|+++++|.+++.+ ...+....++|+++.|.+|+
T Consensus       149 ~~~~~~~~~~~~i~~-~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~  227 (404)
T d1qz9a_         149 RLVDSPEELPQAIDQ-DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY  227 (404)
T ss_dssp             EEESSGGGHHHHCST-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred             cccccchhHHHhcCC-CceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhh
Confidence            233478899999988 7999999999999999999999999999999999999998765 44566677999999999998


Q ss_pred             cCCCCCcEEEEEEeChHHHHH
Q 009523          350 IGGHNDVLAGSISGSGKLVTQ  370 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~  370 (532)
                      +.++.. .+|+++.++.+.+.
T Consensus       228 ~~~~~g-~~g~~~~~~~~~~~  247 (404)
T d1qz9a_         228 LNGGPG-SQAFVWVSPQLCDL  247 (404)
T ss_dssp             TCCCTT-CCCEEEECTTTTTT
T ss_pred             cccCCc-eEEEEEechhhhhh
Confidence            854331 25777777665543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.80  E-value=3.3e-19  Score=188.26  Aligned_cols=221  Identities=12%  Similarity=-0.015  Sum_probs=142.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .+.....++|+.+|+++|+++++++++|+ +++.+++.++++|||+||+++.+|.+++.... .+...+..+.+.+.+  
T Consensus        63 ~~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~~~~~~~~~~~~~~  141 (462)
T d1c4ka2          63 IHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAGGRPVYLQTNRNPY  141 (462)
T ss_dssp             TTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTCCEEEEECEEECTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhcCCceeeecccccc
Confidence            35567889999999999999999999997 55667788899999999999999998765332 233333333322211  


Q ss_pred             -----------CHH---------HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcccc
Q 009523          275 -----------DME---------GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA  334 (532)
Q Consensus       275 -----------dle---------~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~  334 (532)
                                 +.+         .+++++.. +++++++.+.+|..|.+.|+++|+++|+++|+++++|++++.+....+
T Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~  220 (462)
T d1c4ka2         142 GFIGGIYDSDFDEKKIRELAAKVDPERAKWK-RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIP  220 (462)
T ss_dssp             CCEEEECGGGSCHHHHHHHTTTSSHHHHTCS-CCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSG
T ss_pred             cccCCCChHHhhHHHHHhhhhhhcHHhhhcc-CCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccC
Confidence                       122         23344444 466666667778999999999999999999999999999765432211


Q ss_pred             --------------cccCCcEEEECCccccCCCCCcEEEEEEeChHHH---------HHHHHHhhhcCC-CccHH-HHHH
Q 009523          335 --------------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGG-ALNPN-AAYL  389 (532)
Q Consensus       335 --------------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li---------~~l~~~~~~~G~-~~~~~-~a~l  389 (532)
                                    ...++|++++|+||.+++.+  .++++..++..+         +.++.....+.. ..+.. .+.+
T Consensus       221 ~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl  298 (462)
T d1c4ka2         221 MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAAL  298 (462)
T ss_dssp             GGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             cCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHH
Confidence                          12245999999999999876  244544443322         223332222221 12211 1111


Q ss_pred             ----HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          390 ----IIRGMKTLHLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       390 ----~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                          ...........+++..++++++++.+.+.+...
T Consensus       299 ~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~  335 (462)
T d1c4ka2         299 DVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMF  335 (462)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                111111223344566788888888888876543

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.79  E-value=8.8e-18  Score=174.04  Aligned_cols=173  Identities=10%  Similarity=0.070  Sum_probs=120.7

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCC-------CcEEEeC--CH-H---HHHHHHHHHhccCCCEEEEcCCCCcchHHHHH
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGA-------ESTVIMA--SG-M---SASTVMLLALVPAGGHIVTTTDCYRKTRIFIE  258 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga-------~~~i~~s--SG-~---~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~  258 (532)
                      .+.|+-  .....+|++++++++..       ++.++++  .+ +   .++..++++++.|||+|++++|.|+....   
T Consensus        64 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~---  138 (401)
T d7aata_          64 DKEYLP--IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP---  138 (401)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH---
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhh---
Confidence            345653  33456778888876521       2333332  11 1   56777888999999999999999998653   


Q ss_pred             HhcccCCcEEEEeCCC-------CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCC
Q 009523          259 TVLPKMGITATVIDPA-------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~~-------dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~  326 (532)
                       .+...|.+++.++..       +.+.+.+.+..  .+++++++++|+||||.+++   +++|+++|++|++++|.|++|
T Consensus       139 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y  217 (401)
T d7aata_         139 -IFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY  217 (401)
T ss_dssp             -HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             -HHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc
Confidence             345568888777531       56777666632  26899999999999999997   568899999999999999998


Q ss_pred             CCCCccc----cc------c-cCCcEEEECCccccCCCCCcEEEEEEeChHHHHHH
Q 009523          327 ATPLNQK----AL------S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI  371 (532)
Q Consensus       327 a~~~~~~----~l------~-~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l  371 (532)
                      .......    ..      . ...-+++.|++|.++..|. +.|+++++.++++.+
T Consensus       218 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-RiG~~~~~~~~~~~~  272 (401)
T d7aata_         218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE-RAGAFTVICRDAEEA  272 (401)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSSHHHH
T ss_pred             hhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecc-ccceeecchHHHHHH
Confidence            7643211    10      1 1234788899999987764 577787766555443

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.78  E-value=1.5e-17  Score=173.89  Aligned_cols=289  Identities=13%  Similarity=0.108  Sum_probs=180.9

Q ss_pred             HHHHhhhCCCc-EEEe-CCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC--------CC
Q 009523          208 EKMSALEGAES-TVIM-ASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------AD  275 (532)
Q Consensus       208 ~~lA~l~ga~~-~i~~-sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~--------~d  275 (532)
                      ..++++.|.+. +.++ ++|++++.+++++.  ..++++|++++..|.+....+    ...|.....++.        .|
T Consensus       120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~----~~~g~~~~~v~~~~~~~~~~~d  195 (434)
T d2z67a1         120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAV----SFVGMNMRLVETVLDGDRVYVP  195 (434)
T ss_dssp             HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETTEEECC
T ss_pred             HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHH----HHhCCcceEEEeecCCCccCCC
Confidence            44667788754 4444 44446666666665  347899999999998866433    344666555542        48


Q ss_pred             HHHHHHhhcC----CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCc------ccccccCCcEEEEC
Q 009523          276 MEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHS  345 (532)
Q Consensus       276 le~Le~al~~----~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~------~~~l~~gaDivv~S  345 (532)
                      +++|++++++    .++.+|++++|++++|.+.|+++|+++|+++|+++++|++++....      ..+...|+|+++.|
T Consensus       196 ~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s  275 (434)
T d2z67a1         196 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSS  275 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEE
T ss_pred             HHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEc
Confidence            9999999863    2588999999999999999999999999999999999999876542      23456799999999


Q ss_pred             CccccCCCCCcEEEEEE-eChHHHHHHHHHhhhcCCCccHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009523          346 ATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       346 ~sK~lgg~gd~~gG~lv-~~~~li~~l~~~~~~~G~~~~~~~a~l~l--~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                      +||+++++.+  +|++. .++.+++++...............+|..+  .+.+.+....++..++++++.+.|++.+...
T Consensus       276 ~hK~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~  353 (434)
T d2z67a1         276 SDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKT  353 (434)
T ss_dssp             HHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CccccccCCC--ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9998887642  34444 55667777665443333333333334333  2334455566677778888888887642110


Q ss_pred             EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhc
Q 009523          423 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY  502 (532)
Q Consensus       423 ~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~  502 (532)
                        ..+.+.. +           ....+.+.++.+.......+....+.+..+.         .+..       ..-....
T Consensus       354 --g~~ll~~-~-----------~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~---------~~l~-------~~g~~~~  403 (434)
T d2z67a1         354 --GGKFLDV-E-----------SPIASCISVNSDPVEIAAKLYNLRVTGPRGI---------KKTD-------HFGNCYL  403 (434)
T ss_dssp             --SCCBCCC-C-----------CSSEEEEECSSCHHHHHHHHHHTTEESCEEE---------CTTC-------HHHHTCS
T ss_pred             --CceecCC-C-----------CCceeeeecCCCHHHHHHHHHHcCCeeeehh---------hhcc-------ccCeeee
Confidence              0111111 1           1234445554443333333333322111110         0100       0000001


Q ss_pred             C-CCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          503 G-IMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       503 g-i~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                      + ...+++|++++..++++.|+.+.++|++|
T Consensus       404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             cccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence            1 23578999999999999999999999875

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.77  E-value=9e-17  Score=162.85  Aligned_cols=289  Identities=13%  Similarity=0.058  Sum_probs=178.1

Q ss_pred             chhHHHHHHHHHhhhCCCc----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC-
Q 009523          200 NPTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~----~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-  274 (532)
                      ....++.+++|++++|+++    .++++||++++++++..+..++|.+++....+.................+...+.. 
T Consensus        32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (361)
T d1m32a_          32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVA  111 (361)
T ss_dssp             TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccC
Confidence            3567889999999999842    34456889999999999988888777766555443322211222222333222221 


Q ss_pred             ----CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccc
Q 009523          275 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       275 ----dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~  349 (532)
                          +.+.......+ ++++|+++..+|.||.+.|+++|.++||++|+++++|.+++.+ .+.+..++++|+++.|.+|+
T Consensus       112 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~  190 (361)
T d1m32a_         112 RPDVQAIDAILNADP-TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKC  190 (361)
T ss_dssp             CCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSST
T ss_pred             CccchhhHHHHHhcc-CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeeccc
Confidence                22333444455 7999999999999999999999999999999999999998765 45667788999999999999


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHHHH------------------hhhcCCCccHHHHHHHHHhHHH------HHHHHHHHH
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIRNL------------------HHVLGGALNPNAAYLIIRGMKT------LHLRVQQQN  405 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~~~------------------~~~~G~~~~~~~a~l~l~~l~t------l~~r~~~~~  405 (532)
                      ++|+.+  .|+++.+++..+++...                  ......+.+....+.....+..      ...+.++..
T Consensus       191 l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  268 (361)
T d1m32a_         191 IQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQ  268 (361)
T ss_dssp             TCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccCCCC--ceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHH
Confidence            976642  57777776554332210                  0111122333332222222222      122223444


Q ss_pred             HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccccc
Q 009523          406 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVD  484 (532)
Q Consensus       406 ~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~  484 (532)
                      ..++.+.++++.....  +  +.   .+.+        ....+++|.++.+ ......+...|...++.++.|+..    
T Consensus       269 ~~~~~l~~~~~~~g~~--~--~~---~~~~--------rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~----  329 (361)
T d1m32a_         269 QNQRSLVAGMRALGFN--T--LL---DDEL--------HSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS----  329 (361)
T ss_dssp             HHHHHHHHHHHHTTCC--B--SS---CGGG--------BCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS----
T ss_pred             HHHHHHHHHHhhcCCc--c--cC---Chhh--------cCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcC----
Confidence            5566667777765421  1  11   1111        1345788888643 223456667777677777666321    


Q ss_pred             cCccccccCCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHhh
Q 009523          485 QPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVEDFEDLKADVLQALHA  531 (532)
Q Consensus       485 ~pa~~s~~~~~~~~~~~~gi~~~~IRlSv-G~ed~~dli~dL~~AL~~  531 (532)
                                          .++.+|||. |.-+.+ .|+.+.++|+.
T Consensus       330 --------------------~~~~~Ris~~g~~~~~-di~~lv~al~~  356 (361)
T d1m32a_         330 --------------------QSDCFRIGNIGEVYAA-DITALLTAIRT  356 (361)
T ss_dssp             --------------------SSCEEEEECCSSCCHH-HHHHHHHHHHH
T ss_pred             --------------------CCCEEEEeCCCCCCHH-HHHHHHHHHHH
Confidence                                256899994 554433 36666666653

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.6e-17  Score=168.70  Aligned_cols=255  Identities=14%  Similarity=0.125  Sum_probs=165.7

Q ss_pred             HHHHHHHHHhhhCC----C--cEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGA----E--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga----~--~~i~~sSG~~Ai~~al~all---~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .+++++.+.++++.    +  ..++++||++++++++..++   ++||+|++....+.+..  +...+...+..+..+..
T Consensus        38 ~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~--~~~~~~~~~~~~~~~~~  115 (382)
T d2bkwa1          38 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRP  115 (382)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhh--hhhhccccccccccccc
Confidence            33445555555543    2  35666888899999999986   68999999887776644  22344556666655432


Q ss_pred             ------CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCC-CcccccccCCcEEEE
Q 009523          274 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATP-LNQKALSLGADLVLH  344 (532)
Q Consensus       274 ------~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~-~~~~~l~~gaDivv~  344 (532)
                            .+.+.+++++.+.+++++++...+|.||...|++++.++|+++  ++++++|.+++.+ .+.+..++|+|+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~  195 (382)
T d2bkwa1         116 LKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALT  195 (382)
T ss_dssp             SSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEE
T ss_pred             cCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEee
Confidence                  2577777777655789999999999999999999999988765  5999999997764 557777889999999


Q ss_pred             CCccccCCCCCcEEEEEEeChHHHHHHHHHhh--------------------------hcCCCccHHHHHHHHHhHHHH-
Q 009523          345 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------------------------VLGGALNPNAAYLIIRGMKTL-  397 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--------------------------~~G~~~~~~~a~l~l~~l~tl-  397 (532)
                      |.+|+++|+.+  .|+++.+++.++++.....                          ....+++....+.+..+++.+ 
T Consensus       196 s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~  273 (382)
T d2bkwa1         196 ASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL  273 (382)
T ss_dssp             ESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             cccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence            99999955442  6888888877665432110                          111234444444444455543 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009523          398 ----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA  473 (532)
Q Consensus       398 ----~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~  473 (532)
                          ..+.+++.+.+.++.+.+.+...+..+  ...+..          .....+++|.++. .++...+++   ..++.
T Consensus       274 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~----------~~s~~v~~~~~~~-~~~~~~~L~---~~gi~  337 (382)
T d2bkwa1         274 EEGLHKRWDLHREMSDWFKDSLVNGLQLTSV--SRYPSN----------MSAHGLTAVYVAD-PPDVIAFLK---SHGVV  337 (382)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTTTCCEES--SCSSST----------TBCSSCEEEECSC-HHHHHHHHH---HTTEE
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhccccccc--ccCchh----------ccCCcEEEEcCCC-HHHHHHHHH---HCCeE
Confidence                334445556666777777665543221  111110          0123567888764 344444444   45666


Q ss_pred             ecCC
Q 009523          474 PSFG  477 (532)
Q Consensus       474 vs~G  477 (532)
                      ++.|
T Consensus       338 i~~G  341 (382)
T d2bkwa1         338 IAGG  341 (382)
T ss_dssp             CBCC
T ss_pred             EECC
Confidence            6665

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.75  E-value=1.2e-16  Score=163.63  Aligned_cols=254  Identities=19%  Similarity=0.198  Sum_probs=186.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCC--EEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd--~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--  274 (532)
                      .|.+++||+++++++|.+.+++++||+.|+.++++++ +++||  +||++..+|.++...    ....|.+++++|.+  
T Consensus        30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~a----i~~~G~~pv~vDi~~~  105 (371)
T d2fnua1          30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANM----LLESGYTPVFAGIKND  105 (371)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHH----HHHTTCEEEECCBCTT
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccccccccccee----eeccCccccccccccc
Confidence            4789999999999999999999999999999999987 45554  899999999987643    34468999999854  


Q ss_pred             ---CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccccc--ccCCcEEEECC--c
Q 009523          275 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSA--T  347 (532)
Q Consensus       275 ---dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l--~~gaDivv~S~--s  347 (532)
                         +.+++++.+++ +|++|++.   +..|...|+++|.++|+++|+++|+|++++.+......  ...-|+.++|+  +
T Consensus       106 ~~~~~~~~~~~~~~-~t~avi~v---h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~  181 (371)
T d2fnua1         106 GNIDELALEKLINE-RTKAIVSV---DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI  181 (371)
T ss_dssp             SSBCGGGSGGGCCT-TEEEEEEE---CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             ccccchhhhhhccc-hhhccccc---cccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccc
Confidence               46778888877 79999873   56799999999999999999999999998765443322  22347777776  7


Q ss_pred             cccCCCCCcEEEEEEeC-hHHHHHHHHHhh----------------hcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009523          348 KFIGGHNDVLAGSISGS-GKLVTQIRNLHH----------------VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR  410 (532)
Q Consensus       348 K~lgg~gd~~gG~lv~~-~~li~~l~~~~~----------------~~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~  410 (532)
                      |.+..++   ||+++.+ +++.++++..+.                .+...++...|.+++..++.+...+++..+++..
T Consensus       182 K~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~  258 (371)
T d2fnua1         182 KPITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT  258 (371)
T ss_dssp             SSSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhh
Confidence            9888765   6777765 577777775432                1224477888888899999999999999999999


Q ss_pred             HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecC
Q 009523          411 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSF  476 (532)
Q Consensus       411 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~  476 (532)
                      +.+.|.+.+.+.... |......           ....+.+.++.. ...-..|++.|+..+|.+..
T Consensus       259 y~~~l~~~~~~~~~~-~~~~~~~-----------~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~  313 (371)
T d2fnua1         259 YDRIFKDNPYFTPLH-PLLKDKS-----------SNHLYPILMHQKFFTCKKLILESLHKRGILAQV  313 (371)
T ss_dssp             HHHHHTTCSSEEESG-GGCSSCC-----------CCSCEEEEECGGGGGGHHHHHHHHHHTTEECBC
T ss_pred             hcccccccccccccc-ccccccc-----------ccccccccccccchhHHHHHHHHHHHCCCCcce
Confidence            999998877654332 2111111           122344555432 12234566777666766554

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.73  E-value=1.2e-16  Score=163.83  Aligned_cols=170  Identities=18%  Similarity=0.184  Sum_probs=131.3

Q ss_pred             CchhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC--
Q 009523          199 GNPTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  273 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~--~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~--  273 (532)
                      -....+++++.|++++|.+  +++++ +||+.+++.++..++.+|+++++....+.+...  .....+.+.....+..  
T Consensus        48 f~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~  125 (388)
T d2ch1a1          48 LFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERA--VEMSERYGADVRTIEGPP  125 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH--HHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccc--hhhhhhhccccccccccc
Confidence            3456778899999999974  46666 467899999999999999999988777766432  2334445555544432  


Q ss_pred             ---CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCccc
Q 009523          274 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKF  349 (532)
Q Consensus       274 ---~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~  349 (532)
                         .+.+.+++++...+++++++.+.+|.+|.+.|+++|.++|+++|+++++|.+++.+ .+.+..++++|+++.|.+|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~  205 (388)
T d2ch1a1         126 DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKV  205 (388)
T ss_dssp             TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-C
T ss_pred             ccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccc
Confidence               25666666655447999999999999999999999999999999999999997754 45677788999999999999


Q ss_pred             cCCCCCcEEEEEEeChHHHHHHH
Q 009523          350 IGGHNDVLAGSISGSGKLVTQIR  372 (532)
Q Consensus       350 lgg~gd~~gG~lv~~~~li~~l~  372 (532)
                      ++|++  .+|+++.+++.++.+.
T Consensus       206 ~~gp~--G~g~~~~~~~~~~~~~  226 (388)
T d2ch1a1         206 LGAPP--GITPISISPKALDVIR  226 (388)
T ss_dssp             CCCCS--SCEEEEECHHHHHHHH
T ss_pred             cCCCC--eEEEEeccHHHHHhhh
Confidence            98876  3678888877766544

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.73  E-value=2.4e-16  Score=163.73  Aligned_cols=171  Identities=13%  Similarity=0.060  Sum_probs=111.7

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhCC--------Cc-E-EEeCCHHHHHHHHHH-------HhccCCCEEEEcCCCCcch
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEGA--------ES-T-VIMASGMSASTVMLL-------ALVPAGGHIVTTTDCYRKT  253 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~ga--------~~-~-i~~sSG~~Ai~~al~-------all~~Gd~VIv~~~~y~~t  253 (532)
                      ..|.|+  +.....+|++++++++..        +. . +.+.+++.++..+..       +++.|||+|++++|.|+..
T Consensus        66 ~~~~Y~--p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y  143 (412)
T d1ajsa_          66 LNHEYL--PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH  143 (412)
T ss_dssp             CCCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHH
T ss_pred             cCCCCC--CCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhh
Confidence            345565  334456788888887521        22 2 333444444443332       3478999999999999876


Q ss_pred             HHHHHHhcccCCcEEEEe----CC----CCHHHHHHhh---cCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCE
Q 009523          254 RIFIETVLPKMGITATVI----DP----ADMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAI  319 (532)
Q Consensus       254 ~~~~~~~l~~~Gv~v~~v----d~----~dle~Le~al---~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~  319 (532)
                      ...+    +..|.+...+    +.    .|.+++++.+   .+ +++++++++||||||.+++   +++|+++|++||++
T Consensus       144 ~~~~----~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~  218 (412)
T d1ajsa_         144 NGVF----TTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE-FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLF  218 (412)
T ss_dssp             HHHH----HHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH----HHcCCeEEEeecccccccccccHHHHHHHHHhccC-CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEE
Confidence            5444    3345432221    11    2566655543   34 6899999999999999998   67899999999999


Q ss_pred             EEEECCCCCCCccc----c-------cccCCcEEEECCccccCCCCCcEEEEEEeChHHHH
Q 009523          320 VCIDGTFATPLNQK----A-------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT  369 (532)
Q Consensus       320 lIvDet~a~~~~~~----~-------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~  369 (532)
                      +|.||+|.......    .       ......+++.|++|.++..|.. .|++++....++
T Consensus       219 ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R-~G~~~~~~~~~~  278 (412)
T d1ajsa_         219 PFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNER-VGNLTVVAKEPD  278 (412)
T ss_dssp             EEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC-EEEEEEECSSHH
T ss_pred             EEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCC-ccccccchhHHH
Confidence            99999987643211    0       0112458889999999887754 667766554433

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.73  E-value=1.3e-16  Score=162.46  Aligned_cols=293  Identities=14%  Similarity=0.125  Sum_probs=185.7

Q ss_pred             CCCCchhHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          196 GRYGNPTTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       196 ~R~~~p~~~~Le~~lA~l~ga~--~~i~~-sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      +..-....++.++.|++++|.+  ..+++ +||+++++.++..++.+|+++++....|.+..  ........+.....+.
T Consensus        46 ~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  123 (377)
T d1vjoa_          46 DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTIS  123 (377)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhh--hhhhhhhhcccccccc
Confidence            3333456788899999999973  35555 56789999999999999999999888776543  2233444444444433


Q ss_pred             C-----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECC
Q 009523          273 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  346 (532)
Q Consensus       273 ~-----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~  346 (532)
                      .     .+.+..+....+.++++|.+.+.+|.||.+.|+++|.++||++|+++++|.+++.+ ...+...+++|+++.|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~  203 (377)
T d1vjoa_         124 KPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCS  203 (377)
T ss_dssp             CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCS
T ss_pred             cCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecc
Confidence            1     24444444443336899999999999999999999999999999999999998765 45667788999999999


Q ss_pred             ccccCCCCCcEEEEEEeChHHHHHHHHHhh--------------------hcCCCccHHHHHHHHHhHH-----HHHHHH
Q 009523          347 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------------------VLGGALNPNAAYLIIRGMK-----TLHLRV  401 (532)
Q Consensus       347 sK~lgg~gd~~gG~lv~~~~li~~l~~~~~--------------------~~G~~~~~~~a~l~l~~l~-----tl~~r~  401 (532)
                      +|+++|++  .+|+++.++..++.......                    .............+.....     ....+.
T Consensus       204 ~K~~~gp~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~  281 (377)
T d1vjoa_         204 QKGLGCSP--GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCW  281 (377)
T ss_dssp             SSTTCSCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cccccCCC--EEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHH
Confidence            99887765  36777777776665432110                    0111112111111111111     123444


Q ss_pred             HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcc
Q 009523          402 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCE  480 (532)
Q Consensus       402 ~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L-~~~~i~vs~G~~~  480 (532)
                      ++..+....+.+.+...... .+      ..+.+        ...++++|.++++ .....+...| +..++.++.|.. 
T Consensus       282 ~~~~~~~~~l~~~l~~~~~~-~~------~~~~~--------rs~~v~~~~~p~~-~~~~~l~~~L~~~~gI~v~~G~~-  344 (377)
T d1vjoa_         282 QRHQKNVEYLWERLEDIGLS-LH------VEKEY--------RLPTLTTVCIPDG-VDGKAVARRLLNEHNIEVGGGLG-  344 (377)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-BS------SCGGG--------BCSSEEEEECCTT-CCHHHHHHHHHHHHCEECEECCG-
T ss_pred             HHHHHHhhhhhhhhhccCce-ee------cChHh--------cCCeEEEEECCCC-CCHHHHHHHHHhcCCEEEecCcc-
Confidence            55556677777777764321 11      11211        2456888988643 2233444443 333566555521 


Q ss_pred             cccccCccccccCCCHHHHHhcCCCCCeEEEE-ecCCCHHHHHHHHHHHHhh
Q 009523          481 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS-FGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       481 sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlS-vG~ed~~dli~dL~~AL~~  531 (532)
                           +                 ..++.+|+| +|..+..+.++.|.++|++
T Consensus       345 -----~-----------------~~~~~~Ris~~g~~~t~edi~~lv~al~~  374 (377)
T d1vjoa_         345 -----E-----------------LAGKVWRVGLMGFNSRKESVDQLIPALEQ  374 (377)
T ss_dssp             -----G-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             -----c-----------------ccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence                 0                 125689999 6876655556777666654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.73  E-value=1.5e-16  Score=162.89  Aligned_cols=208  Identities=13%  Similarity=0.089  Sum_probs=163.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC----
Q 009523          200 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  274 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~al-l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~----  274 (532)
                      .|.++.||+.+++++|.+.+++++||+.|+.++++++ +++||+|+++..+|.++...    +...|.+++++|.+    
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~----~~~~g~~pv~~Di~~~~~   95 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAP----ICYLKAKPVFIDCDETYN   95 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHH----HHHTTCEEEEECBCTTSS
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHH----HhhccceeEecccccccc
Confidence            4889999999999999999999999999999999998 89999999999999987643    34568899999865    


Q ss_pred             --CHH--HHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCccccccc--CCcEEEECCc-
Q 009523          275 --DME--GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL--GADLVLHSAT-  347 (532)
Q Consensus       275 --dle--~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~~~l~~--gaDivv~S~s-  347 (532)
                        +.+  .++..+.+ ++++|++   .+..|...|+++|.++|+++|++||+|++++.+...+....  -.|+.++||+ 
T Consensus        96 ~~~~~~~~~~~~~~~-~~~aii~---~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~  171 (374)
T d1o69a_          96 IDVDLLKLAIKECEK-KPKALIL---THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNG  171 (374)
T ss_dssp             BCHHHHHHHHHHCSS-CCCEEEE---ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred             cccccccccchhccc-ccccccc---cccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccC
Confidence              122  33345555 6888887   45569999999999999999999999999876544333222  2599999985 


Q ss_pred             -cccCCCCCcEEEEEEe-ChHHHHHHHHHhhh--------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009523          348 -KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV--------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  411 (532)
Q Consensus       348 -K~lgg~gd~~gG~lv~-~~~li~~l~~~~~~--------------~G~~~~~~~a~l~l~~l~tl~~r~~~~~~~a~~l  411 (532)
                       |.++.++   ||+++. ++++.++++.++..              +...++.+.|.+....++.+...+++..++++.+
T Consensus       172 ~K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y  248 (374)
T d1o69a_         172 NKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWY  248 (374)
T ss_dssp             TSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHH
Confidence             8887665   566665 56777777655421              1234778888888889999998888888888888


Q ss_pred             HHHHHhC
Q 009523          412 AKILEAH  418 (532)
Q Consensus       412 a~~L~~~  418 (532)
                      .+.|.+.
T Consensus       249 ~~~L~~~  255 (374)
T d1o69a_         249 KEFLGEY  255 (374)
T ss_dssp             HHHHTTT
T ss_pred             Hhhcccc
Confidence            8888764

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.72  E-value=1.6e-16  Score=167.58  Aligned_cols=217  Identities=16%  Similarity=0.158  Sum_probs=148.4

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      .-.|+  ++|++.+||+++|+++|.+.+++++||++|+.+++++++++||+|+.... +..+...+    ...|.....+
T Consensus        68 Dd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i----~~~g~~~~~~  140 (456)
T d1c7ga_          68 DEAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQ----EKNGATFVDI  140 (456)
T ss_dssp             CCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHH----HHTTEEEEEC
T ss_pred             chhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHH----HHcCceeeec
Confidence            34566  68999999999999999999999999999999999999999999987654 33332211    1223333322


Q ss_pred             C---------------CCCHHHHHHhhcCC---CeeEEEEeCCCCCCC-ccc---CHHHHHHHHHhCCCEEEEECCCCCC
Q 009523          272 D---------------PADMEGLEAALNNN---NVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       272 d---------------~~dle~Le~al~~~---~tklV~lesP~NptG-~v~---dl~~I~~la~~~gi~lIvDet~a~~  329 (532)
                      .               ..|+++|+++|+++   ++.++++++++|+.| .+.   ++++|.++|++||+++++|++....
T Consensus       141 ~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~  220 (456)
T d1c7ga_         141 VRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVE  220 (456)
T ss_dssp             BCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhc
Confidence            1               13899999998642   467999999999875 444   4778899999999999999994311


Q ss_pred             -----------Cc-ccc------cccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHHhhhcCC-----CccHH
Q 009523          330 -----------LN-QKA------LSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG-----ALNPN  385 (532)
Q Consensus       330 -----------~~-~~~------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~~~~~G~-----~~~~~  385 (532)
                                 +. ...      .-..+|+++.|++|.++++.   ||+++.++ ++.++++......++     .++..
T Consensus       221 ~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~  297 (456)
T d1c7ga_         221 NAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGR  297 (456)
T ss_dssp             HHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHH
T ss_pred             chhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhhHH
Confidence                       10 000      01237999999999998764   78888764 566777654332221     22233


Q ss_pred             HHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhC
Q 009523          386 AAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       386 ~a~l~l~~l~tl--~~r~~~~~~~a~~la~~L~~~  418 (532)
                      ....+..++...  ...+++..+++++|.+.|++.
T Consensus       298 ~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         298 DMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333321  233455667888999999875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.1e-16  Score=161.88  Aligned_cols=172  Identities=16%  Similarity=0.091  Sum_probs=115.6

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCC--------Cc--EEEeCCHHHH--HHHHHHHhccCCCEEEEcCCCCcchHHHHHH
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGA--------ES--TVIMASGMSA--STVMLLALVPAGGHIVTTTDCYRKTRIFIET  259 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga--------~~--~i~~sSG~~A--i~~al~all~~Gd~VIv~~~~y~~t~~~~~~  259 (532)
                      .+.|+  +.....+||+++++++..        +.  .+.+++|+.+  +...+...+.+||.|++++|.|+....    
T Consensus        62 ~~~Y~--p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~----  135 (396)
T d2q7wa1          62 TKNYL--GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS----  135 (396)
T ss_dssp             CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH----
T ss_pred             CCCCC--CCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchH----
Confidence            34454  334567888888886521        12  2334444444  444455567899999999999987553    


Q ss_pred             hcccCCcEEEEeCCC-------CHHHHHHhh---cCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCC
Q 009523          260 VLPKMGITATVIDPA-------DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       260 ~l~~~Gv~v~~vd~~-------dle~Le~al---~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~  326 (532)
                      .+...|.++..++..       +...+++..   .+ +++++++++|+||||.+++   +++|+++|++|++++|+|++|
T Consensus       136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y  214 (396)
T d2q7wa1         136 VFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA-GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAY  214 (396)
T ss_dssp             HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT-TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHcCCeeEecccccccccccccchHHHHHHHhcc-CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            345567777766532       344444433   33 6889999999999999998   558888999999999999998


Q ss_pred             CCCCccc-----cc-----ccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHH
Q 009523          327 ATPLNQK-----AL-----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI  371 (532)
Q Consensus       327 a~~~~~~-----~l-----~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l  371 (532)
                      .......     ..     .....+++.|++|.++..|. +.|+++++...++.+
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-R~G~~~~~~~~~~~~  268 (396)
T d2q7wa1         215 QGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNE-RVGACTLVAADSETV  268 (396)
T ss_dssp             TTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHH
T ss_pred             cccccCCccCchHhhhhhhhcccccccccccccccccCC-CccccccchhHHHHH
Confidence            7643211     10     12235788899999987774 467777766555443

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.7e-15  Score=158.28  Aligned_cols=206  Identities=11%  Similarity=0.139  Sum_probs=138.9

Q ss_pred             HHHHHHhhhCCC---cEEEeCCHHH-HHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC-----
Q 009523          206 VEEKMSALEGAE---STVIMASGMS-ASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  273 (532)
Q Consensus       206 Le~~lA~l~ga~---~~i~~sSG~~-Ai~~al~al---l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~-----  273 (532)
                      +.+.+++++|.+   ..+++++|++ ++.+++.++   ..++++||++...|.+....    +...|++...++.     
T Consensus        99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a----~~~~g~~~~~v~~~~~~~  174 (445)
T d3bc8a1          99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MVTAGFEPVVIENVLEGD  174 (445)
T ss_dssp             HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEECCEEETT
T ss_pred             HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHH----HHHcCCeeEEEEeeccCc
Confidence            335567777763   4677777774 444444443   35678999999999876543    4455777666652     


Q ss_pred             ---CCHHHHHHhhcC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCCCcc--c----cccc-CCc
Q 009523          274 ---ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--K----ALSL-GAD  340 (532)
Q Consensus       274 ---~dle~Le~al~~---~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~~~~--~----~l~~-gaD  340 (532)
                         .|+++|++++++   .++.+|++++|+|++|.+.|+++|+++|+++|+++|+|++++.+...  .    .... ++|
T Consensus       175 ~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd  254 (445)
T d3bc8a1         175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID  254 (445)
T ss_dssp             EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCC
T ss_pred             ccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcc
Confidence               389999998853   25899999999999999999999999999999999999998765321  1    1122 589


Q ss_pred             EEEECCccccCCCCCcEEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 009523          341 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAKILEA  417 (532)
Q Consensus       341 ivv~S~sK~lgg~gd~~gG~lv~-~~~li~~l~~~~~~~G~~~~~~~a~l~l~~--l~tl~~r~~~~~~~a~~la~~L~~  417 (532)
                      +++.|+||+++++.+  +|+++. +..+.+.+.......+........|..+..  .+......++..+++.++.+.|.+
T Consensus       255 ~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~  332 (445)
T d3bc8a1         255 AFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK  332 (445)
T ss_dssp             EEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCccccccCCC--CceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence            999999998776542  455555 456666665544333333334444544332  233444555566667777666654

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=2.4e-14  Score=141.09  Aligned_cols=301  Identities=13%  Similarity=0.058  Sum_probs=176.4

Q ss_pred             ChHHHHHHhhcccCCCCCCCCCchhHHHHHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHH
Q 009523          178 KTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF  256 (532)
Q Consensus       178 ~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i-~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~  256 (532)
                      +++.+++..+.. .++..+.+.+|..+++|+.+|+++|.+..+ +++||++|+..++..++.+++.+++....|......
T Consensus        16 ~P~v~~A~~~a~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~   94 (345)
T d1v72a1          16 SPEVAQALVKHS-SGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC   94 (345)
T ss_dssp             CHHHHHHHHHTT-SSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST
T ss_pred             CHHHHHHHHHHh-ccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeech
Confidence            344444443322 344445568899999999999999997655 569999999999999999999988887776553221


Q ss_pred             HHHhcccCCcEEEEeC-----CCCHHHHHHhhcCC-----Cee-EEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEE
Q 009523          257 IETVLPKMGITATVID-----PADMEGLEAALNNN-----NVS-LFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCI  322 (532)
Q Consensus       257 ~~~~l~~~Gv~v~~vd-----~~dle~Le~al~~~-----~tk-lV~lesP~NptG~v~---dl~~I~~la~~~gi~lIv  322 (532)
                      . ......+..+..+.     ..+++.+++.+.+.     .+. .++...+.|+.+...   +++++.++|+++|+++++
T Consensus        95 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  173 (345)
T d1v72a1          95 G-APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM  173 (345)
T ss_dssp             T-HHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             h-hHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeee
Confidence            1 11222344444443     24789999888652     122 334445556666654   467788889999999999


Q ss_pred             ECCCCCC--------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCC--CccHHHHHHHHH
Q 009523          323 DGTFATP--------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLIIR  392 (532)
Q Consensus       323 Det~a~~--------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~--~~~~~~a~l~l~  392 (532)
                      |+++...        +.........+.++.+.+|...+..   ++.+.................+.  ......+.....
T Consensus       174 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~  250 (345)
T d1v72a1         174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA---EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDA  250 (345)
T ss_dssp             EETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC---EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHH
T ss_pred             cccccceeccccccCHHHhhccccccccccCccccccccc---cccccchhhhhhhccccccccccccchhhHHhhhhHH
Confidence            9996431        1111122234455555554443332   33333343333322222222222  222222222222


Q ss_pred             hH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC
Q 009523          393 GM--KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP  470 (532)
Q Consensus       393 ~l--~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~  470 (532)
                      .+  ........+.....+++.+.+.+++++. +..|.                .++++.+.+++  ..+++++    ..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~p~----------------~~niv~~~~~~--~~~~~L~----~~  307 (345)
T d1v72a1         251 YLTDDLWLRNARKANAAAQRLAQGLEGLGGVE-VLGGT----------------EANILFCRLDS--AMIDALL----KA  307 (345)
T ss_dssp             HTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE-EESCC----------------CSSEEEEEECH--HHHHHHH----HT
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhcCCcE-eccCC----------------CccEEEEEcCH--HHHHHHH----Hc
Confidence            11  1223344455566777888888888874 33342                25688888863  3333333    33


Q ss_pred             ceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          471 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       471 ~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      ++.+..+        +                 ..++.|||+++..++++.|+.+.++|++
T Consensus       308 gi~v~~~--------~-----------------~~~~~lR~~~~~~~T~edid~~le~lr~  343 (345)
T d1v72a1         308 GFGFYHD--------R-----------------WGPNVVRFVTSFATTAEDVDHLLNQVRL  343 (345)
T ss_dssp             TCBCBCS--------S-----------------SSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcccc--------C-----------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5444322        0                 1257899999999888888888888875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.68  E-value=2.5e-15  Score=156.10  Aligned_cols=169  Identities=14%  Similarity=0.126  Sum_probs=114.0

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhCC-------C-cEEEe--CCHHHHHHHH--HHHhccCCCEEEEcCCCCcchHHHHH
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEGA-------E-STVIM--ASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIE  258 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~ga-------~-~~i~~--sSG~~Ai~~a--l~all~~Gd~VIv~~~~y~~t~~~~~  258 (532)
                      ..|.|+  +.....+|++++++++..       + ..+.+  ++|..++..+  +..++.+||.|++++|.|+....   
T Consensus        65 ~~~~Y~--p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~---  139 (412)
T d1yaaa_          65 YNHEYL--GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA---  139 (412)
T ss_dssp             CCCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH---
T ss_pred             cCCCCC--CCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHH---
Confidence            345565  334566788888886521       2 22222  2333443333  44567899999999999988553   


Q ss_pred             HhcccCCcEEEEeCC-------CCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCC
Q 009523          259 TVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~-------~dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~  326 (532)
                       .+...|.++..++.       .+.+.+++.+..  .+++++++++|+||||.+++   +++|+++|+++++++|+|++|
T Consensus       140 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y  218 (412)
T d1yaaa_         140 -IFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAY  218 (412)
T ss_dssp             -HHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             -HHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeeccee
Confidence             34556777766653       155666655532  25789999999999999997   678899999999999999998


Q ss_pred             CCCCccc----c----------cccCCcEEEECCccccCCCCCcEEEEEEeChH
Q 009523          327 ATPLNQK----A----------LSLGADLVLHSATKFIGGHNDVLAGSISGSGK  366 (532)
Q Consensus       327 a~~~~~~----~----------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~  366 (532)
                      .......    +          ......+++.|+||.++..|. +.||++++.+
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~  271 (412)
T d1yaaa_         219 QGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALT  271 (412)
T ss_dssp             TTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECC
T ss_pred             eecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcC-ceEEEEEchh
Confidence            7543211    0          011234889999999987774 5788887643

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.6e-15  Score=154.78  Aligned_cols=288  Identities=16%  Similarity=0.141  Sum_probs=186.7

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhcc----------CCCEEEEcCCCCcch-HHHH--------H
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKT-RIFI--------E  258 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~----------~Gd~VIv~~~~y~~t-~~~~--------~  258 (532)
                      +.++....+++.++++.+.+.+.+++||++|+..+++...+          ...+|+.....|++. ...+        .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~  159 (404)
T d2byla1          80 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY  159 (404)
T ss_dssp             EEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHH
T ss_pred             cccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccc
Confidence            45667788899999999999999999999999999875421          224677777777662 1111        1


Q ss_pred             HhcccCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC-----
Q 009523          259 TVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-----  329 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~-----  329 (532)
                      .........+..++.+|++++++++.++++.+|++|...+..|.+.+    +++|.++|++||+++|+||++...     
T Consensus       160 ~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~  239 (404)
T d2byla1         160 DGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR  239 (404)
T ss_dssp             TTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred             cCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc
Confidence            11222223456678889999999998767999999988877787765    899999999999999999996431     


Q ss_pred             -CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHH--HHHHHH
Q 009523          330 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNS  406 (532)
Q Consensus       330 -~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~r--~~~~~~  406 (532)
                       +.+.....-.||++  ++|.++++. ...|.+++++++.+.+...........+|..+..++..|+.+...  .++..+
T Consensus       240 ~~a~~~~gv~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~  316 (404)
T d2byla1         240 WLAVDYENVRPDIVL--LGKALSGGL-YPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADK  316 (404)
T ss_dssp             SSGGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             cchhhhcCCCCCEEE--ECchhhCCC-ccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhH
Confidence             22333344569996  889999753 346888888888766544322111223678777777777766431  223333


Q ss_pred             HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCccccccc
Q 009523          407 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQ  485 (532)
Q Consensus       407 ~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-~~~~~~~l~~L~~~~i~vs~G~~~sl~~~  485 (532)
                      ...++.+.|++..      .+.          -...+|.|.|..|++... .....++..++...++-+.          
T Consensus       317 ~g~~l~~~l~~l~------~~~----------i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~----------  370 (404)
T d2byla1         317 LGIILRNELMKLP------SDV----------VTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAK----------  370 (404)
T ss_dssp             HHHHHHHHHHTSC------TTT----------EEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECE----------
T ss_pred             hhHHHHHHHHhhc------ccc----------ceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEe----------
Confidence            4445555555431      110          112356788999998642 2334556665544443221          


Q ss_pred             CccccccCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhh
Q 009523          486 PAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALHA  531 (532)
Q Consensus       486 pa~~s~~~~~~~~~~~~gi~~~~IRlSvG----~ed~~dli~dL~~AL~~  531 (532)
                      |.                 ..+.|||+..    .++.++.++.|+++|..
T Consensus       371 ~~-----------------~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         371 PT-----------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             EE-----------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cC-----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            10                 1356888743    35667777777777754

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=2e-15  Score=153.87  Aligned_cols=247  Identities=17%  Similarity=0.235  Sum_probs=168.9

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHh-cccCCcEEEEe-
Q 009523          199 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVI-  271 (532)
Q Consensus       199 ~~p~~~~Le----~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~-l~~~Gv~v~~v-  271 (532)
                      |....+++|    ++..++++++.+ +-..||+.|+.+++.++++|||+|+..+..+++....-... ......++..+ 
T Consensus        63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~  142 (405)
T d1kl1a_          63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG  142 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEec
Confidence            456666665    555678898754 56689999999999999999999999998887743210000 00112233332 


Q ss_pred             -CC----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCC-----CCCcccccccCCcE
Q 009523          272 -DP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLNQKALSLGADL  341 (532)
Q Consensus       272 -d~----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a-----~~~~~~~l~~gaDi  341 (532)
                       +.    .|.+++++.++..++|+|++-.-.  .....|++++.++|++.|+++++|.++-     .+...+|++. +|+
T Consensus       143 ~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDv  219 (405)
T d1kl1a_         143 VDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHF  219 (405)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSE
T ss_pred             cchhcccccHHHHHHHHHhhCcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhh
Confidence             22    389999999887789999983333  5677899999999999999999999943     3456788865 899


Q ss_pred             EEECCccccCCCCCcEEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHH---HhH-HHHHHHHHHHHHHHHHHHHHH
Q 009523          342 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLII---RGM-KTLHLRVQQQNSTALRMAKIL  415 (532)
Q Consensus       342 vv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~--~~~G~~~~~~~a~l~l---~~l-~tl~~r~~~~~~~a~~la~~L  415 (532)
                      |+.|.||.|.|+.   ||+++.++++.+++.+..  ...|+......+..+.   ..+ .......++..+|++.|++.|
T Consensus       220 vt~tThKtlrGPr---gg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L  296 (405)
T d1kl1a_         220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccCCC---CceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999984   899999998888876532  2233322222222222   112 234556678889999999999


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALK  468 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L~  468 (532)
                      .+.. + .+..-+..               ..++.+.+..   +...+++.+++..
T Consensus       297 ~~~G-~-~vv~ggTd---------------~H~vlvdl~~~~~~g~~ae~~Le~ag  335 (405)
T d1kl1a_         297 QNEG-F-TLVSGGTD---------------NHLLLVDLRPQQLTGKTAEKVLDEVG  335 (405)
T ss_dssp             HHTT-C-EEGGGSCS---------------SSEEEEECGGGTCCHHHHHHHHHHHT
T ss_pred             hcCC-c-eeecCCCc---------------cceeeccccccCCcHHHHHHHHHHcC
Confidence            8863 3 23222222               2377887743   2355666666654

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.9e-15  Score=152.38  Aligned_cols=247  Identities=17%  Similarity=0.162  Sum_probs=166.4

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHh-cccCCcEEEEe-
Q 009523          199 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVI-  271 (532)
Q Consensus       199 ~~p~~~~Le----~~lA~l~ga~~~-i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~-l~~~Gv~v~~v-  271 (532)
                      |+...+++|    ++..+++|++.+ +-..||+.|+.+++.++++|||+|+..+..+++....-... ......+...+ 
T Consensus        66 G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~  145 (416)
T d1dfoa_          66 GCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYG  145 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecc
Confidence            455555554    555678998764 55789999999999999999999999999998853211000 00001122222 


Q ss_pred             -C---CCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC-----CCcccccccCCcEE
Q 009523          272 -D---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQKALSLGADLV  342 (532)
Q Consensus       272 -d---~~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~-----~~~~~~l~~gaDiv  342 (532)
                       +   ..|.+++++.++..++|+|++-.-  -.....|++++.++|++.|+++++|.++..     +...+|++. +|+|
T Consensus       146 ~d~~~~IDyd~l~~~a~~~kPklIi~G~S--~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvv  222 (416)
T d1dfoa_         146 IDATGHIDYADLEKQAKEHKPKMIIGGFS--AYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVV  222 (416)
T ss_dssp             BCSSSSBCHHHHHHHHHHHCCSEEEEECS--SCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEE
T ss_pred             cCCccCccHHHHHHHHHHhccceEEeccc--ccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-ccee
Confidence             2   238999999887778999998533  356888999999999999999999999543     445788887 6999


Q ss_pred             EECCccccCCCCCcEEEEEEeC---hHHHHHHHHHh--hhcCCCccHHHHHHHH---HhH-HHHHHHHHHHHHHHHHHHH
Q 009523          343 LHSATKFIGGHNDVLAGSISGS---GKLVTQIRNLH--HVLGGALNPNAAYLII---RGM-KTLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       343 v~S~sK~lgg~gd~~gG~lv~~---~~li~~l~~~~--~~~G~~~~~~~a~l~l---~~l-~tl~~r~~~~~~~a~~la~  413 (532)
                      ..|+||.|.|+.   ||+++.+   +++.+++.+..  ...|+......+..+.   ..+ .......++..+|++.|++
T Consensus       223 t~tThKtlrGPr---ggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~  299 (416)
T d1dfoa_         223 TTTTHKTLAGPR---GGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE  299 (416)
T ss_dssp             EEESSSTTCCCS---CEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhcccCCC---ceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999984   8999985   46777776532  2234333222222221   112 1335566788899999999


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALK  468 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L~  468 (532)
                      .|.+.. + ++..-+..+               .++.+.+..   +...++..+++..
T Consensus       300 ~L~~~G-~-~iv~ggTdn---------------Hlvlvdl~~~~~~G~~a~~~Le~~g  340 (416)
T d1dfoa_         300 VFLERG-Y-KVVSGGTDN---------------HLFLVDLVDKNLTGKEADAALGRAN  340 (416)
T ss_dssp             HHHHTT-C-EEGGGSCSS---------------SEEEEECGGGTCCHHHHHHHHHHTT
T ss_pred             HHHhCC-c-ccccCCCCC---------------ceeEEEecccCCCHHHHHHHHHHcC
Confidence            999873 3 333333222               367777753   2355666666543

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=3.2e-15  Score=153.83  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh----CC---CcEEEeCCHH--HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcc
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE----GA---ESTVIMASGM--SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP  262 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~----ga---~~~i~~sSG~--~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~  262 (532)
                      .|.|+-  .....+|++++++++    +.   ...+++++|+  .++.+.+..+..+||.|++++|.|+.....    ++
T Consensus        62 ~~~Y~p--~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~----~~  135 (394)
T d2ay1a_          62 TKTYAG--LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSI----MN  135 (394)
T ss_dssp             CCCCCC--SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHH----HH
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHH----HH
Confidence            455653  234556777777764    22   2456666665  445566667789999999999999875533    34


Q ss_pred             cCCcEEEEeCCC-------CHHHHHHhh---cCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCC
Q 009523          263 KMGITATVIDPA-------DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       263 ~~Gv~v~~vd~~-------dle~Le~al---~~~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~  329 (532)
                      ..|.+++.++..       +.+++++..   .+ +++++++++|+||||.+++   +++|+++|+++++++|.|++|...
T Consensus       136 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l  214 (394)
T d2ay1a_         136 FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK-GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF  214 (394)
T ss_dssp             HHTCCEEEEECEETTTTEECHHHHHHHHHTCCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             HcCCEEEEecccchhcccccchhHHHHHhhccc-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhh
Confidence            456666655421       344444433   33 5889999999999999998   668889999999999999998765


Q ss_pred             Cccc----c------cccCCcEEEECCccccCCCCCcEEEEEEeChHHHH
Q 009523          330 LNQK----A------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT  369 (532)
Q Consensus       330 ~~~~----~------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~  369 (532)
                      ....    +      ......+++.|++|.++..|. +.|++++....++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-R~G~~~~~~~~~~  263 (394)
T d2ay1a_         215 GDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE-RTGCLLALCADAA  263 (394)
T ss_dssp             SSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG-CEEEEEEECSSHH
T ss_pred             cccccccchhhhhhhhhcccccccccccccccCCcc-cccchhhchhHHH
Confidence            3211    0      011234677899999987664 4677776554443

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.65  E-value=1.2e-14  Score=150.60  Aligned_cols=286  Identities=16%  Similarity=0.200  Sum_probs=178.1

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhc----------cCCCEEEEcCCCCcchHHHHHHhcc-----
Q 009523          198 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----------PAGGHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all----------~~Gd~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      ..+.....+++.+..+.+.+.+.++.||++|+..++....          .....++.....|++..........     
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~  157 (404)
T d1z7da1          78 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  157 (404)
T ss_dssp             SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             cchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccc
Confidence            3445667788889999998899999999999988876432          1223677777777764321111100     


Q ss_pred             ----cCCcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC-----
Q 009523          263 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-----  329 (532)
Q Consensus       263 ----~~Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~-----  329 (532)
                          ..-..+..++.++.+.++..+.+.++.+|++|......|.+.+    +++|.++|++||+++|+||++...     
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~  237 (404)
T d1z7da1         158 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK  237 (404)
T ss_dssp             --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred             cCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc
Confidence                0111234456678899998887767999999999888888876    899999999999999999996421     


Q ss_pred             -CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHH
Q 009523          330 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  406 (532)
Q Consensus       330 -~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~  406 (532)
                       +.+.....-+||++  ++|.++++. ..+|++++++++.+.++..........+|..+.+++..++.+..  ..++..+
T Consensus       238 ~~~~e~~gv~PDivt--~gK~l~gG~-~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~  314 (404)
T d1z7da1         238 LLCVHHYNVKPDVIL--LGKALSGGH-YPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  314 (404)
T ss_dssp             SSGGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             cccccccCCCCCEEE--EcccccCCC-CCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhcc
Confidence             22334455679997  889998753 35788889988877665432211122367877777666665322  1112222


Q ss_pred             HH----HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccc
Q 009523          407 TA----LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI  482 (532)
Q Consensus       407 ~a----~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl  482 (532)
                      ..    +.+.+.+++++.+..|                  +|.|.|+.|++..+......+...+...++-+.       
T Consensus       315 ~~~~~~~~l~~~~~~~~~v~~v------------------rg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~-------  369 (404)
T d1z7da1         315 LGGPFLENLKRELKDSKIVRDV------------------RGKGLLCAIEFKNELVNVLDICLKLKENGLITR-------  369 (404)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEE------------------EEETTEEEEEECTTTCCHHHHHHHHHHTTEECC-------
T ss_pred             chhHHHHHHHHHHhcCCCeEEE------------------EeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEe-------
Confidence            22    3334444555555444                  456889999998643333444444443343221       


Q ss_pred             cccCccccccCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHHHhh
Q 009523          483 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----GVEDFEDLKADVLQALHA  531 (532)
Q Consensus       483 ~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G~ed~~dli~dL~~AL~~  531 (532)
                         |                 ..++.|||+.    ..++.++.++.|+++|+.
T Consensus       370 ---~-----------------~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~  402 (404)
T d1z7da1         370 ---D-----------------VHDKTIRLTPPLCITKEQLDECTEIIVKTVKF  402 (404)
T ss_dssp             ---E-----------------ETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---c-----------------CCCCEEEEECCcCCCHHHHHHHHHHHHHHHHh
Confidence               1                 1245678773    345677778888888764

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.6e-15  Score=154.45  Aligned_cols=285  Identities=11%  Similarity=0.064  Sum_probs=179.5

Q ss_pred             hhHHHHHHHHHhhhCCC-c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCC--CH
Q 009523          201 PTTVVVEEKMSALEGAE-S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--DM  276 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~-~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~--dl  276 (532)
                      ...+..++.|.++++.+ + .++.+||+.++++++..++++||+|++....+.+..  +...+++++.++..++..  +.
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~  110 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  110 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCc
Confidence            45677788999999875 3 455678889999999999999999888877765543  335677778777765532  11


Q ss_pred             HHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEECCCCCC-CcccccccCCcEEEECCccccCCC
Q 009523          277 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGH  353 (532)
Q Consensus       277 e~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~--gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~lgg~  353 (532)
                      ..++..... ++++|++.+..+.+|.+.|+++|.++|+++  ++++++|.+.+.+ .+.+...+++|+++.|.+|+++|+
T Consensus       111 ~~~~~~~~~-~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gp  189 (348)
T d1iuga_         111 PRPEDVAKE-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCP  189 (348)
T ss_dssp             CCTTTSCCS-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCC
T ss_pred             ccccccccc-CCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecC
Confidence            112222333 688999988888999999999999999886  4899999997654 345666779999999999999554


Q ss_pred             CCcEEEEEEeChHHHHHHH---------HHhh-----hcCCCccHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHH
Q 009523          354 NDVLAGSISGSGKLVTQIR---------NLHH-----VLGGALNPNAAYLIIRGMKTLHLRVQQQN----STALRMAKIL  415 (532)
Q Consensus       354 gd~~gG~lv~~~~li~~l~---------~~~~-----~~G~~~~~~~a~l~l~~l~tl~~r~~~~~----~~a~~la~~L  415 (532)
                      .+  .|+++.+++.+++++         .+..     ..-.+++....+.+..+++.+..+.+++.    .....+..++
T Consensus       190 pG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~  267 (348)
T d1iuga_         190 PG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVG  267 (348)
T ss_dssp             SC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence            42  578888887766432         1111     11123444445555555554432222222    2222333333


Q ss_pred             HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCC
Q 009523          416 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS  495 (532)
Q Consensus       416 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~  495 (532)
                      +.. ++..  .|.-              ....+++|.++.+ .+...+.+.|+..++.+..|.. .              
T Consensus       268 ~~~-gl~~--~~~~--------------~s~~v~~~~~P~g-~~~~~~~~~l~~~gi~i~~G~~-~--------------  314 (348)
T d1iuga_         268 EEG-GLRP--VPKR--------------FSPAVAAFYLPEG-VPYARVKEAFAQRGAVIAGGQG-P--------------  314 (348)
T ss_dssp             HHT-TCEE--SCSS--------------BCTTCEEEECCTT-CCHHHHHHHHHTTTEECEECCG-G--------------
T ss_pred             hhh-hhcc--Chhh--------------cCCeEEEEECCCC-CCHHHHHHHHHHCCeEEEcCcc-c--------------
Confidence            332 3321  1211              1245788999753 2334556666656666654421 0              


Q ss_pred             HHHHHhcCCCCCeEEEE-ecC---CCHHHHHHHHHHHHhh
Q 009523          496 QSERLKYGIMDNLVRFS-FGV---EDFEDLKADVLQALHA  531 (532)
Q Consensus       496 ~~~~~~~gi~~~~IRlS-vG~---ed~~dli~dL~~AL~~  531 (532)
                              +.+..+||+ +|.   +|.+.+++.|+++|++
T Consensus       315 --------l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         315 --------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             --------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             --------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                    124689996 454   4455666777777765

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.1e-15  Score=157.85  Aligned_cols=171  Identities=12%  Similarity=0.028  Sum_probs=117.9

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhCC--------CcEEEeCCHH----HHHHHHHHHhccCCCEEEEcCCCCcchHHHHH
Q 009523          191 ASFEYGRYGNPTTVVVEEKMSALEGA--------ESTVIMASGM----SASTVMLLALVPAGGHIVTTTDCYRKTRIFIE  258 (532)
Q Consensus       191 ~~~~Y~R~~~p~~~~Le~~lA~l~ga--------~~~i~~sSG~----~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~  258 (532)
                      ..+.|+  +.....+||+++|+++..        +..+.+.+++    .++.+++..++.|||+|++++|+|.....   
T Consensus        62 ~~~~Y~--p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~---  136 (397)
T d3tata_          62 GASLYL--PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA---  136 (397)
T ss_dssp             SSBCCC--CTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHH---
T ss_pred             cCCCCC--CcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHH---
Confidence            344555  344566789999987642        2333332222    34666777788999999999999998654   


Q ss_pred             HhcccCCcEEEEeCCC-------CHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCC
Q 009523          259 TVLPKMGITATVIDPA-------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  326 (532)
Q Consensus       259 ~~l~~~Gv~v~~vd~~-------dle~Le~al~~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~  326 (532)
                       .++..|.++..++..       |.+++.+.+..  .+++++++.+|+||||.+++   +++|.++|+++++++|.|++|
T Consensus       137 -~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y  215 (397)
T d3tata_         137 -IFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAY  215 (397)
T ss_dssp             -HHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSC
T ss_pred             -HHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhh
Confidence             345567777777642       45665555432  25889999999999999997   568888999999999999998


Q ss_pred             CCCCcc-c----cc----cc-CCcEEEECCccccCCCCCcEEEEEEeChHHH
Q 009523          327 ATPLNQ-K----AL----SL-GADLVLHSATKFIGGHNDVLAGSISGSGKLV  368 (532)
Q Consensus       327 a~~~~~-~----~l----~~-gaDivv~S~sK~lgg~gd~~gG~lv~~~~li  368 (532)
                      .....- .    ..    .. ..-+++.|+||.++..|. +.|+++++..++
T Consensus       216 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~  266 (397)
T d3tata_         216 QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDA  266 (397)
T ss_dssp             TTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT-CCBCCEEECSST
T ss_pred             hhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc-cccccccchhHH
Confidence            764321 0    10    11 124888999999987775 467777655333

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=5.2e-14  Score=148.82  Aligned_cols=248  Identities=16%  Similarity=0.197  Sum_probs=166.1

Q ss_pred             CCchhHHHHH----HHHHhhhCCC-----------cEEEeCCHHHHHHHHHHHhcc----------CC---------CEE
Q 009523          198 YGNPTTVVVE----EKMSALEGAE-----------STVIMASGMSASTVMLLALVP----------AG---------GHI  243 (532)
Q Consensus       198 ~~~p~~~~Le----~~lA~l~ga~-----------~~i~~sSG~~Ai~~al~all~----------~G---------d~V  243 (532)
                      ...|....+|    +.|++++|-+           ..+++++|++|+..++.+...          .|         -.|
T Consensus       106 ~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv  185 (476)
T d1js3a_         106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA  185 (476)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred             hhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEE
Confidence            3456666665    4566666653           358888999998887754311          11         147


Q ss_pred             EEcCCCCcchHHHHHHhcccCCcEEEEeCCC-----CHHHHHHhhcCC-----CeeEEEEeCCCCCCCcccCHHHHHHHH
Q 009523          244 VTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLC  313 (532)
Q Consensus       244 Iv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~-----dle~Le~al~~~-----~tklV~lesP~NptG~v~dl~~I~~la  313 (532)
                      ++++..|.+..    ..+...|+.+..++.+     |+++|+++|++.     .+-+|+....++.+|.+.|+++|+++|
T Consensus       186 ~~s~~~H~Si~----ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~  261 (476)
T d1js3a_         186 YASDQAHSSVE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC  261 (476)
T ss_dssp             EEETTCCHHHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred             EecccccHHHH----HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHH
Confidence            78888888754    3344557777767643     799999998642     256788888899999999999999999


Q ss_pred             HhCCCEEEEECCCCCCCcc----cccc---cCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHH--------HHHHhh-
Q 009523          314 HKKGAIVCIDGTFATPLNQ----KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQ--------IRNLHH-  376 (532)
Q Consensus       314 ~~~gi~lIvDet~a~~~~~----~~l~---~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~--------l~~~~~-  376 (532)
                      ++||++++||++|+.....    +.+-   ..+|.+..++||+++.+.+  +|+++.++ .....        +..... 
T Consensus       262 ~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~~~~~~~~  339 (476)
T d1js3a_         262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQG  339 (476)
T ss_dssp             HHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------
T ss_pred             HhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhhhcccccc
Confidence            9999999999998764321    1111   2579999999999998763  45555543 32211        110000 


Q ss_pred             ------------hcCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhc
Q 009523          377 ------------VLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM  442 (532)
Q Consensus       377 ------------~~G~~~~~~~a~l~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~  442 (532)
                                  ..+-.......|..++  |.+.+...+++..+.++++++.|+++|.++-+..|.              
T Consensus       340 ~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~--------------  405 (476)
T d1js3a_         340 SGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT--------------  405 (476)
T ss_dssp             CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC--------------
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc--------------
Confidence                        0111223445555544  445677788888899999999999999876554443              


Q ss_pred             CCcccEEEEEEcCCHHHHHHHHHHcC
Q 009523          443 TGFGGVVSFEVDGDLTATIKFIDALK  468 (532)
Q Consensus       443 ~g~G~~vsf~l~g~~~~~~~~l~~L~  468 (532)
                         -++|.|.+++.....+++++++.
T Consensus       406 ---l~iV~Fr~~~~d~~n~~l~~~l~  428 (476)
T d1js3a_         406 ---LGLVCFRLKGSDGLNEALLERIN  428 (476)
T ss_dssp             ---SSEEEEEESSCHHHHHHHHHHHH
T ss_pred             ---eEEEEEEccCChHHHHHHHHHHH
Confidence               25899999865455566777664

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=2.6e-14  Score=147.40  Aligned_cols=234  Identities=15%  Similarity=0.158  Sum_probs=158.3

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHH---------HHhcccC
Q 009523          198 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFI---------ETVLPKM  264 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~---------~~~l~~~  264 (532)
                      ..++....+.+.+.+....  +.+.+++||++|+..+++..  ......|+.....|++.....         .......
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~  155 (387)
T d1vefa1          76 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL  155 (387)
T ss_dssp             SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC
T ss_pred             cCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCC
Confidence            4567777777777776654  35788899999999998754  234468888888887732111         1111222


Q ss_pred             CcEEEEeCCCCHHHHHHhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------Ccccc
Q 009523          265 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKA  334 (532)
Q Consensus       265 Gv~v~~vd~~dle~Le~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------~~~~~  334 (532)
                      .-.+.+++.+|+++|++.+++ ++.+|++|......|...+    +++|.++|++||+++|.||++...      ..+..
T Consensus       156 ~~~~~~~p~~d~~~l~~~~~~-~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~  234 (387)
T d1vefa1         156 VEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH  234 (387)
T ss_dssp             SSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred             CCCceEeCCCCHHHHHHhcCC-CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCccccc
Confidence            235667888899999999987 7999999988777787766    899999999999999999996432      22333


Q ss_pred             cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhHHHHHH--HHHHHHHHHHH
Q 009523          335 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMKTLHL--RVQQQNSTALR  410 (532)
Q Consensus       335 l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~--~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~  410 (532)
                      ...-+|+++  ++|.++++-  ..+.+++.++..+.+...  .+|.+  .+|..+.+++..++.+..  ..++..+...+
T Consensus       235 ~~v~PDi~~--~gK~l~gG~--~~~~~~~~~~~~~~~~~~--~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~  308 (387)
T d1vefa1         235 FGIVPDILT--LAKALGGGV--PLGVAVMREEVARSMPKG--GHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPW  308 (387)
T ss_dssp             HTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHHTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CCcCCceee--ecccCCCCc--cccccccceeeeeccccC--CccccCCCCcchhhhcccchhhcccccccchHhhhhHH
Confidence            445679998  789998753  455666666666554332  23333  368888877777776642  12334445556


Q ss_pred             HHHHHHhC--CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC
Q 009523          411 MAKILEAH--PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD  456 (532)
Q Consensus       411 la~~L~~~--p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~  456 (532)
                      +.+.|++.  +.|.                  ..+|.|.|+.|+++.+
T Consensus       309 l~~~L~~l~~~~v~------------------~vrg~Gl~~~ie~~~~  338 (387)
T d1vefa1         309 FMEKLRAIPSPKIR------------------EVRGMGLMVGLELKEK  338 (387)
T ss_dssp             HHHHHHTSCCTTEE------------------EEEEETTEEEEEESSC
T ss_pred             HHHHHHhcCCCceE------------------EEeecceEEEEEEeCC
Confidence            66666643  2222                  2356788999999753

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=4.9e-14  Score=148.04  Aligned_cols=291  Identities=11%  Similarity=-0.061  Sum_probs=183.4

Q ss_pred             hhHHHHH----HHHHhhhCCC-------cEEEeCCHHHHHHHHHHHhcc-----------CC-CEEEEcCCCCcchHHHH
Q 009523          201 PTTVVVE----EKMSALEGAE-------STVIMASGMSASTVMLLALVP-----------AG-GHIVTTTDCYRKTRIFI  257 (532)
Q Consensus       201 p~~~~Le----~~lA~l~ga~-------~~i~~sSG~~Ai~~al~all~-----------~G-d~VIv~~~~y~~t~~~~  257 (532)
                      |...++|    +.||+++|.+       ..+++++|++|+.+++.+...           ++ ..++++...|.+    +
T Consensus        89 P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s----~  164 (450)
T d1pmma_          89 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQIC----W  164 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHH----H
T ss_pred             ccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHH----H
Confidence            5555554    5788888852       268999999999988765421           12 246777777765    3


Q ss_pred             HHhcccCCcEEEEeCCC------CHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHH------HhCCCEEEEECC
Q 009523          258 ETVLPKMGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC------HKKGAIVCIDGT  325 (532)
Q Consensus       258 ~~~l~~~Gv~v~~vd~~------dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la------~~~gi~lIvDet  325 (532)
                      ...++.+|++++.++.+      |+++|++++++ +|.+|+...++|.||.+.|+++|.++|      +++|++++||++
T Consensus       165 ~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA  243 (450)
T d1pmma_         165 HKFARYWDVELREIPMRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA  243 (450)
T ss_dssp             HHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECT
T ss_pred             HHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh-CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehh
Confidence            35667779998887642      79999999988 699999999999999999998887774      568999999999


Q ss_pred             CCCCCc-cccc-------ccCCcEEEECCccccCCCCCcEEEEEEeCh-HHHHHHHHH-----hh------hcCCCc--c
Q 009523          326 FATPLN-QKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNL-----HH------VLGGAL--N  383 (532)
Q Consensus       326 ~a~~~~-~~~l-------~~gaDivv~S~sK~lgg~gd~~gG~lv~~~-~li~~l~~~-----~~------~~G~~~--~  383 (532)
                      ++.+.. +...       -.++|.+..|.||+++++-+  .|+++.++ .........     ..      ..++..  .
T Consensus       244 ~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~  321 (450)
T d1pmma_         244 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQ  321 (450)
T ss_dssp             TGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHH
T ss_pred             hccceeeeechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHH
Confidence            865432 1111       13689999999999886643  46666654 322111000     00      011111  1


Q ss_pred             HHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HH
Q 009523          384 PNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LT  458 (532)
Q Consensus       384 ~~~a~l~l--~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~---~~  458 (532)
                      ....|..+  .+.+.+...+++..++++++.+.|++.+.+.-+ .|+-+   .         ..-++|+|.+++.   ..
T Consensus       322 ~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~-~~~~p---~---------~~l~~V~Fr~~~~~~~~~  388 (450)
T d1pmma_         322 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI-CTGRP---D---------EGIPAVCFKLKDGEDPGY  388 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEE-EECCT---T---------TBSSEEEEEECTTCCCSS
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-eCCCC---C---------CceEEEEEecCCcccCCC
Confidence            22344433  344556777788889999999999999876543 33211   1         0124789998642   11


Q ss_pred             HHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHhh
Q 009523          459 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALHA  531 (532)
Q Consensus       459 ~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed----~~dli~dL~~AL~~  531 (532)
                      ....+.+.|...|..++.     . ..|..              ......+|+++....    .+.+++||+++++.
T Consensus       389 ~~~~l~~~L~~~Gw~v~~-----~-~~p~~--------------~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~  445 (450)
T d1pmma_         389 TLYDLSERLRLRGWQVPA-----F-TLGGE--------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY  445 (450)
T ss_dssp             CHHHHHHHHHTTTCBCCE-----E-ECCTT--------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeeec-----c-CcCCC--------------cCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            233455556554432221     0 01110              112347999997644    45667777777654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.57  E-value=1.1e-13  Score=134.39  Aligned_cols=287  Identities=14%  Similarity=0.056  Sum_probs=161.2

Q ss_pred             CCCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeC
Q 009523          195 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  272 (532)
Q Consensus       195 Y~R~~~p~~~~Le~~lA~l~ga~--~~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd  272 (532)
                      .++..++..+++|+++|+++|.+  +++++++|++|+..++..+.++++.+++....|........ ........+...+
T Consensus        29 ~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  107 (340)
T d1svva_          29 AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGA-IEATGHKVVTAPC  107 (340)
T ss_dssp             CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTH-HHHTTCCEEEECC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeeccc-ccccceeeeeccc
Confidence            33346888999999999999984  56777889999999999999999999998887765322111 1111122222222


Q ss_pred             C---CCHHHHHHhhc---C--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEECCCCCCCc--------cc
Q 009523          273 P---ADMEGLEAALN---N--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--------QK  333 (532)
Q Consensus       273 ~---~dle~Le~al~---~--~~tklV~lesP~NptG~v~d---l~~I~~la~~~gi~lIvDet~a~~~~--------~~  333 (532)
                      .   .+.+....+..   .  ..+..+++.++.|+.|.+.+   +..+.++|+++|.++++|+++.....        ..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~  187 (340)
T d1svva_         108 PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLA  187 (340)
T ss_dssp             TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHH
T ss_pred             ccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccc
Confidence            1   12222222211   1  12334444444455565554   55677889999999999999542111        11


Q ss_pred             ccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC-CCcc-HHHHHHHHHhH--HHHHHHHHHHHHHHH
Q 009523          334 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALN-PNAAYLIIRGM--KTLHLRVQQQNSTAL  409 (532)
Q Consensus       334 ~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G-~~~~-~~~a~l~l~~l--~tl~~r~~~~~~~a~  409 (532)
                      ......++...+..|..++..   +++..................+ .... ......+...+  .......++...++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~  264 (340)
T d1svva_         188 DIARLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAA  264 (340)
T ss_dssp             HHHHHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             cccccceeeecCCcccccccc---ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            111223466666666655443   4555554444333332222222 2222 22111111111  122333445556677


Q ss_pred             HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccc
Q 009523          410 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM  489 (532)
Q Consensus       410 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~  489 (532)
                      ++.+.|+..+ +. +..|.                .++++.+.+++  +...++.+.+...++.+..             
T Consensus       265 ~~~~~l~~~g-~~-~~~p~----------------~~~~v~~~~~~--~~~~~l~~~~~~~~~~~~~-------------  311 (340)
T d1svva_         265 ILKAGLEACG-IR-LAWPS----------------ASNQLFPILEN--TMIAELNNDFDMYTVEPLK-------------  311 (340)
T ss_dssp             HHHHHHHHTT-CC-BSSCC----------------SSSEECBEEEH--HHHHHHTTTEECEEEEEET-------------
T ss_pred             hhHHHHhcCC-Ce-eecCC----------------CceEEEEeCCH--HHHHHHHHhhhhhcccccC-------------
Confidence            7777777643 32 22232                25677777764  4455555544332222111             


Q ss_pred             cccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009523          490 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI  532 (532)
Q Consensus       490 s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~l  532 (532)
                                    ...+.||+|++..++++.|+.+.++|++|
T Consensus       312 --------------~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         312 --------------DGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             --------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             --------------CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence                          12578999999999999999999999875

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=3e-14  Score=150.01  Aligned_cols=220  Identities=18%  Similarity=0.142  Sum_probs=143.8

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEc--------CCCCcchHHHHHHhccc
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTT--------TDCYRKTRIFIETVLPK  263 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~VIv~--------~~~y~~t~~~~~~~l~~  263 (532)
                      ...|+  ++|+..+||+++++++|.+.+++++||++|+..++.+++++||.++..        ...|..+..   .....
T Consensus        67 d~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~---~~~~~  141 (467)
T d2v1pa1          67 DEAFS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ---GHSQI  141 (467)
T ss_dssp             CCCSS--SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH---HHHHH
T ss_pred             chhhc--CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH---HHHHH
Confidence            34566  589999999999999999999999999999999999988776643322        233333221   12233


Q ss_pred             CCcEEEEeCC---------------CCHHHHHHhhcC---CCeeEEEEeCCCCCCC-ccc---CHHHHHHHHHhCCCEEE
Q 009523          264 MGITATVIDP---------------ADMEGLEAALNN---NNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVC  321 (532)
Q Consensus       264 ~Gv~v~~vd~---------------~dle~Le~al~~---~~tklV~lesP~NptG-~v~---dl~~I~~la~~~gi~lI  321 (532)
                      .|..+..++.               .|+++|++.+++   .++++|+++..+|..| .+.   ++++|.++|++||++||
T Consensus       142 ~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~  221 (467)
T d2v1pa1         142 NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV  221 (467)
T ss_dssp             TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEE
Confidence            4666665532               368899988863   2478899988887654 444   47889999999999999


Q ss_pred             EECCCCCC-----------C-cccc------cccCCcEEEECCccccCCCCCcEEEEEEeChHHHHH-H---HHHhhhc-
Q 009523          322 IDGTFATP-----------L-NQKA------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-I---RNLHHVL-  378 (532)
Q Consensus       322 vDet~a~~-----------~-~~~~------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~-l---~~~~~~~-  378 (532)
                      +|+++...           + ...+      ....+|++..|.+|.++++.   ||+++.+++.+.. .   +...... 
T Consensus       222 ~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~~  298 (467)
T d2v1pa1         222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQE  298 (467)
T ss_dssp             EECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             EechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhcccccccc
Confidence            99995311           0 0000      11237899999999998764   7888887654332 2   2211111 


Q ss_pred             C----CCccHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhCC
Q 009523          379 G----GALNPNAAYLIIRGMK--TLHLRVQQQNSTALRMAKILEAHP  419 (532)
Q Consensus       379 G----~~~~~~~a~l~l~~l~--tl~~r~~~~~~~a~~la~~L~~~p  419 (532)
                      +    .......+......+.  .....+++..++++++.+.|.+..
T Consensus       299 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         299 GFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            1    1222222222222222  223455667788999999998864

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.54  E-value=1.2e-13  Score=142.87  Aligned_cols=239  Identities=16%  Similarity=0.140  Sum_probs=151.9

Q ss_pred             HHHHHhhhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHH--H--hcccCCc--EEEEe--CC
Q 009523          207 EEKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE--T--VLPKMGI--TATVI--DP  273 (532)
Q Consensus       207 e~~lA~l~ga~~-----~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~--~--~l~~~Gv--~v~~v--d~  273 (532)
                      .++..++++++.     .+-.-||+.|+.+++.++++|||+|+..+..+++....-.  .  .....|.  +...+  +.
T Consensus        79 ~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~  158 (463)
T d2a7va1          79 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP  158 (463)
T ss_dssp             HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT
T ss_pred             HHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC
Confidence            466778899865     3677899999999999999999999999888877532110  0  0011122  12222  21


Q ss_pred             ----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCC-----CCCCcccccccCCcEEEE
Q 009523          274 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQKALSLGADLVLH  344 (532)
Q Consensus       274 ----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~-----a~~~~~~~l~~gaDivv~  344 (532)
                          .|.+++++.++..++++|++-.-  -.....|++++.++|++.|+++++|.++     +.+...+|++. +|+|+.
T Consensus       159 ~~~~IDyd~~~~~a~~~kPklIi~G~S--~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~  235 (463)
T d2a7va1         159 KTGLIDYNQLALTARLFRPRLIIAGTS--AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTT  235 (463)
T ss_dssp             TTCSBCHHHHHHHHHHHCCSEEEECCS--SCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEE
T ss_pred             CCCcCcHHHHHHHHhhcCCceEEeccc--ccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhc
Confidence                38999999888778999998333  3457789999999999999999999994     34556788876 799999


Q ss_pred             CCccccCCCCCcEEEEEEeCh---------------HHHHHHHHHh--hhcCCCccHHHHHHHH---HhH-HHHHHHHHH
Q 009523          345 SATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLH--HVLGGALNPNAAYLII---RGM-KTLHLRVQQ  403 (532)
Q Consensus       345 S~sK~lgg~gd~~gG~lv~~~---------------~li~~l~~~~--~~~G~~~~~~~a~l~l---~~l-~tl~~r~~~  403 (532)
                      |.||.|.|+.   ||++..++               ++.+++....  ...|+...-..+..+.   ..+ .......++
T Consensus       236 tTHKTlrGPr---gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~q  312 (463)
T d2a7va1         236 TTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ  312 (463)
T ss_dssp             ESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             hhhhhhcCCC---ceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHH
Confidence            9999999984   89988765               5566666532  2233322222222221   122 134566778


Q ss_pred             HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcC
Q 009523          404 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALK  468 (532)
Q Consensus       404 ~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L~  468 (532)
                      ..+|++.|++.|.+.. + .+..-+..+               .++.+.+..   +...+++.++...
T Consensus       313 Vv~NAk~La~~L~~~G-~-~vv~ggTdn---------------Hlvlvdl~~~~~~G~~ae~~Le~~g  363 (463)
T d2a7va1         313 VLKNARAMADALLERG-Y-SLVSGGTDN---------------HLVLVDLRPKGLDGARAERVLELVS  363 (463)
T ss_dssp             HHHHHHHHHHHHHHTT-C-EEGGGSCSS---------------SEEEEECTTTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCC-C-eeecCCCCC---------------ceeeeeccccCCCHHHHHHHHHhcc
Confidence            8899999999999864 3 233333333               377787753   2345666666654

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.53  E-value=4.5e-13  Score=138.89  Aligned_cols=246  Identities=17%  Similarity=0.163  Sum_probs=163.7

Q ss_pred             CchhHHHHH----HHHHhhhCCC----c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhc--ccC---
Q 009523          199 GNPTTVVVE----EKMSALEGAE----S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL--PKM---  264 (532)
Q Consensus       199 ~~p~~~~Le----~~lA~l~ga~----~-~i~~sSG~~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l--~~~---  264 (532)
                      |+...+++|    ++..+++|++    . .+-.-||+.|+.+++.++++|||+|+..+..+++....- ...  ...   
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~  149 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT  149 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence            566677766    4446788875    2 355689999999999999999999999988877643110 000  010   


Q ss_pred             --CcEEEEe--CC----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCC-----CCCc
Q 009523          265 --GITATVI--DP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLN  331 (532)
Q Consensus       265 --Gv~v~~v--d~----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a-----~~~~  331 (532)
                        ..+...+  +.    .|.+++++..+..++++|++-.-.  .....|++++.++|++.|++|++|.++-     .+..
T Consensus       150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~  227 (470)
T d1rv3a_         150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV  227 (470)
T ss_dssp             HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred             cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence              1223332  22    388999998877789999983333  4577899999999999999999999953     3456


Q ss_pred             ccccccCCcEEEECCccccCCCCCcEEEEEEeCh---------------HHHHHHHHHh--hhcCCCccHHHHHHHHH--
Q 009523          332 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLH--HVLGGALNPNAAYLIIR--  392 (532)
Q Consensus       332 ~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~---------------~li~~l~~~~--~~~G~~~~~~~a~l~l~--  392 (532)
                      .+|++. +|+|+.|.||.|.|+.   ||++..++               ++.+++....  ...|+...-..+.++..  
T Consensus       228 ~sPl~~-aDvvt~tTHKtlrGPr---gGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~  303 (470)
T d1rv3a_         228 PSPFEH-CHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK  303 (470)
T ss_dssp             CCGGGT-CSEEEEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred             CChhhe-eeeeeeehhhhccCCc---ceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH
Confidence            788876 6999999999999884   89988754               3566665532  22233222222222211  


Q ss_pred             -hH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHc
Q 009523          393 -GM-KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDAL  467 (532)
Q Consensus       393 -~l-~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g---~~~~~~~~l~~L  467 (532)
                       .+ .......++..+|++.|++.|.+.. + .+..-+..+               .++.+.+..   +...+++.++..
T Consensus       304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~G-~-~v~~ggTdn---------------Hlvlvdl~~~g~~g~~ae~~Le~~  366 (470)
T d1rv3a_         304 QAMTPEFKEYQRQVVANCRALSAALVELG-Y-KIVTGGSDN---------------HLILVDLRSKGTDGGRAEKVLEAC  366 (470)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHTT-C-EEGGGSCSS---------------SEEEEEGGGGTCCHHHHHHHHHHT
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHhCC-c-eeccCCCCC---------------ceEEEeecccCCcHHHHHHHHHHc
Confidence             11 1345666788899999999999864 3 333333322               367777652   345667777765


Q ss_pred             C
Q 009523          468 K  468 (532)
Q Consensus       468 ~  468 (532)
                      .
T Consensus       367 g  367 (470)
T d1rv3a_         367 S  367 (470)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.49  E-value=1.2e-12  Score=136.42  Aligned_cols=295  Identities=12%  Similarity=0.127  Sum_probs=174.4

Q ss_pred             CCCCCCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcc-----
Q 009523          192 SFEYGRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP-----  262 (532)
Q Consensus       192 ~~~Y~R~~~p~~~~Le~~lA~l~--ga~~~i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~-----  262 (532)
                      .|..+.+.++...+|.++|.++.  +.+.+.+++||++|+..+++..  ....++|+.....|++.....-....     
T Consensus        74 ~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~  153 (431)
T d1zoda1          74 DHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRK  153 (431)
T ss_dssp             CCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCS
T ss_pred             cccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhccccccccc
Confidence            35566677777888999999887  3477889999999999998854  23457888888888884322211110     


Q ss_pred             ---cCCcEEEEeCC--------------C---CHHHHHHhh---cCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009523          263 ---KMGITATVIDP--------------A---DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  315 (532)
Q Consensus       263 ---~~Gv~v~~vd~--------------~---dle~Le~al---~~~~tklV~lesP~NptG~v~d----l~~I~~la~~  315 (532)
                         ........++.              .   +++.++..+   ...++.+|++|......|.+.+    +++|.++|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~  233 (431)
T d1zoda1         154 GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA  233 (431)
T ss_dssp             SSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH
T ss_pred             ccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHh
Confidence               00011111211              0   123332222   2236999999998766677665    8999999999


Q ss_pred             CCCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcC--CCccHHHH
Q 009523          316 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAA  387 (532)
Q Consensus       316 ~gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G--~~~~~~~a  387 (532)
                      ||+++|.||++...      +.......-+|+++  +.|.++++-  ..+.+++.++..+.........+  ...+|..+
T Consensus       234 ~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~gG~--p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~  309 (431)
T d1zoda1         234 RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGAGL--PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPA  309 (431)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHTTS--SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHH
T ss_pred             cCceEEeccccccccccccccccccCCCCcchhc--ccccccccc--ccceeeeeecchhhhhcccccccCCCCCCcchH
Confidence            99999999996531      22333445679998  789998764  34556677777666544222222  23467776


Q ss_pred             HHHHHhHHHHHH--HHHHHHHHHH----HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----
Q 009523          388 YLIIRGMKTLHL--RVQQQNSTAL----RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----  456 (532)
Q Consensus       388 ~l~l~~l~tl~~--r~~~~~~~a~----~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~-----  456 (532)
                      .++...++.+..  ..++..+..+    .+.+.+.+++.+..|                  +|.|.|+.|++..+     
T Consensus       310 aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~v------------------rG~Glm~~ie~~~~~~~~~  371 (431)
T d1zoda1         310 AVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV------------------RGRGLLLGVEIVKDRRTKE  371 (431)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTE
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEE------------------eecceEEEEEEecCCcccC
Confidence            666655554321  1122222222    233344555655444                  45788999988311     


Q ss_pred             --HHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009523          457 --LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH  530 (532)
Q Consensus       457 --~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~  530 (532)
                        .....++...+...++..  +..    ..+                 -..+.||++..+    ++.++.++.|+++|+
T Consensus       372 ~~~~~~~~i~~~~~~~Gl~~--~~~----~~~-----------------~~~~~i~l~Ppl~it~~eid~~~~~l~~al~  428 (431)
T d1zoda1         372 PADGLGAKITRECMNLGLSM--NIV----QLP-----------------GMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE  428 (431)
T ss_dssp             ECTTHHHHHHHHHHHTTEEC--CEE----CCT-----------------TSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccc--Cee----eec-----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence              123444554443333211  100    001                 125678888554    667777888888887


Q ss_pred             h
Q 009523          531 A  531 (532)
Q Consensus       531 ~  531 (532)
                      +
T Consensus       429 ~  429 (431)
T d1zoda1         429 R  429 (431)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.49  E-value=2.3e-12  Score=134.19  Aligned_cols=216  Identities=17%  Similarity=0.173  Sum_probs=143.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHH---------HHHhccc-
Q 009523          197 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF---------IETVLPK-  263 (532)
Q Consensus       197 R~~~p~~~~Le~~lA~l~ga-~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~---------~~~~l~~-  263 (532)
                      -...+....+.+.+.++.+. +.+.+++||++|+..+++...  ....+||.....|++....         ....+.. 
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~  167 (427)
T d2gsaa_          88 GAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSS  167 (427)
T ss_dssp             SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSC
T ss_pred             ccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCC
Confidence            34556667788888887665 567788999999999998542  3456888888888873110         0000100 


Q ss_pred             ------CCcEEEEeCCCCHHHHHHhhcC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC--
Q 009523          264 ------MGITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--  329 (532)
Q Consensus       264 ------~Gv~v~~vd~~dle~Le~al~~--~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~--  329 (532)
                            ........+..|++++++.+++  .++.+|++|......|.+.+    +++|.++|++||+++|+||++...  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~  247 (427)
T d2gsaa_         168 PGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI  247 (427)
T ss_dssp             SSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT
T ss_pred             CCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccccccee
Confidence                  0123444567899999999975  36899999988777788877    999999999999999999997432  


Q ss_pred             ---CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHh-hhcCC--CccHHHHHHHHHhHHHHHH--HH
Q 009523          330 ---LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGG--ALNPNAAYLIIRGMKTLHL--RV  401 (532)
Q Consensus       330 ---~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~-~~~G~--~~~~~~a~l~l~~l~tl~~--r~  401 (532)
                         ..........||++  +.|.++++.  ..|++++++++.+.+.... ...++  ..+|..+..++..++.+..  ..
T Consensus       248 g~~~~~~~~gi~PDi~~--~gK~lggG~--p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~  323 (427)
T d2gsaa_         248 AYGGVQEKFGVTPDLTT--LGKIIGGGL--PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTY  323 (427)
T ss_dssp             BTTCHHHHTTCCCSEEE--ECGGGGTTS--CCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred             cccchHHhcCCCHHHHh--hhhccCCCc--ceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHH
Confidence               11222344579998  789888653  4567788888887664321 11222  3467777777777765532  22


Q ss_pred             HHHHHHHHHHHHHHH
Q 009523          402 QQQNSTALRMAKILE  416 (532)
Q Consensus       402 ~~~~~~a~~la~~L~  416 (532)
                      ++..+..+++.+.|+
T Consensus       324 ~~~~~~g~~l~~~L~  338 (427)
T d2gsaa_         324 EYLDQITKRLSDGLL  338 (427)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHH
Confidence            334444455544443

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.3e-12  Score=133.07  Aligned_cols=288  Identities=15%  Similarity=0.150  Sum_probs=171.5

Q ss_pred             CCCCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc-------cCCCEEEEcCCCCcchHHHHHHhc---
Q 009523          194 EYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIFIETVL---  261 (532)
Q Consensus       194 ~Y~R~~~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all-------~~Gd~VIv~~~~y~~t~~~~~~~l---  261 (532)
                      .++++.++...++.+++.+..+.  +.+.+++||++|+..+++...       .+..+||.....|++.........   
T Consensus        79 ~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~  158 (429)
T d1s0aa_          79 MFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPD  158 (429)
T ss_dssp             CCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTT
T ss_pred             ccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCc
Confidence            35566777777788888887653  567889999999998886442       223578888888887321111110   


Q ss_pred             -------ccCCcEEEEeC-----------CCCHHHHHHhhc--CCCeeEEEEeCCC-CCCCccc-C---HHHHHHHHHhC
Q 009523          262 -------PKMGITATVID-----------PADMEGLEAALN--NNNVSLFFTESPT-NPFLRCV-D---VKLVSDLCHKK  316 (532)
Q Consensus       262 -------~~~Gv~v~~vd-----------~~dle~Le~al~--~~~tklV~lesP~-NptG~v~-d---l~~I~~la~~~  316 (532)
                             ..........+           ..+++++++.+.  .+++.+|++|... +..|... |   +++|.++|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~  238 (429)
T d1s0aa_         159 NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE  238 (429)
T ss_dssp             TTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred             cccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc
Confidence                   00000011111           124555555443  2369999998764 4444433 3   88999999999


Q ss_pred             CCEEEEECCCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhh---hcCC--CccHH
Q 009523          317 GAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---VLGG--ALNPN  385 (532)
Q Consensus       317 gi~lIvDet~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~---~~G~--~~~~~  385 (532)
                      |+++|+||++...      ........-.|+++  ++|.+++++ ...+++++++++.+.+.....   .++.  ..+|.
T Consensus       239 gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~  315 (429)
T d1s0aa_         239 GILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGT-MTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL  315 (429)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSS-SCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHH
T ss_pred             Ccceehhhccccccccccccccccceecccccc--ccccccccc-ccccchhhHHHHHhccCCCCCcceeecCCCCCCcc
Confidence            9999999996532      22344455679998  789997654 356788889988887754210   1122  23577


Q ss_pred             HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhC---CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009523          386 AAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAH---PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT  460 (532)
Q Consensus       386 ~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~~~---p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~  460 (532)
                      .+..++..|+.+..  -+++..+...++.+.|++.   +.|.                  ..+|.|.|+.|++... ...
T Consensus       316 ~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~------------------~vrg~Gl~~~~e~~~~-~~~  376 (429)
T d1s0aa_         316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVA------------------DVRVLGAIGVVETTHP-VNM  376 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEE------------------EEEEETTEEEEEESSC-BCH
T ss_pred             cchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceE------------------EEeecccEEEEEecCc-ccH
Confidence            77777777776532  2233333344445555331   2222                  2256788999999753 223


Q ss_pred             HHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHHHhh
Q 009523          461 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----GVEDFEDLKADVLQALHA  531 (532)
Q Consensus       461 ~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G~ed~~dli~dL~~AL~~  531 (532)
                      ..+...+...++-+.          |                  ..+.|||+.    ..++.+++++.|+++|++
T Consensus       377 ~~~~~~~~~~Gl~~~----------~------------------~g~~i~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         377 AALQKFFVEQGVWIR----------P------------------FGKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             HHHHHHHHHTTEECC----------C------------------BTTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHCCcEEE----------e------------------cCCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence            344444433332221          1                  135677764    345667777777777753

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=9.5e-12  Score=129.35  Aligned_cols=287  Identities=14%  Similarity=0.137  Sum_probs=171.8

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHHhcc----------
Q 009523          198 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP----------  262 (532)
Q Consensus       198 ~~~p~~~~Le~~lA~l~ga---~~~i~~sSG~~Ai~~al~all--~~Gd~VIv~~~~y~~t~~~~~~~l~----------  262 (532)
                      ..++...+|.+.|.++...   +.+++++||++|+..+++...  ....+|+.....|++........-.          
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            4567777888899988854   457778999999999987542  3346788888888884332211110          


Q ss_pred             cCCcEEEEeCCC-------------CHHHHH-HhhcCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEC
Q 009523          263 KMGITATVIDPA-------------DMEGLE-AALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG  324 (532)
Q Consensus       263 ~~Gv~v~~vd~~-------------dle~Le-~al~~~~tklV~lesP~NptG~v~d----l~~I~~la~~~gi~lIvDe  324 (532)
                      ............             +.+++. .....+++.+|++|......|.+.+    ++.|.++|++||+++|+||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DE  239 (425)
T d1sffa_         160 LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE  239 (425)
T ss_dssp             CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEecc
Confidence            000111111110             011111 1112236899999998876776654    7899999999999999999


Q ss_pred             CCCCC------CcccccccCCcEEEECCccccCCCCCcEEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH
Q 009523          325 TFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH  398 (532)
Q Consensus       325 t~a~~------~~~~~l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~  398 (532)
                      ++...      ..+......+||++  ++|.++++.  ..|++++++++.+.+...........+|..+..++..|+.+.
T Consensus       240 V~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~gG~--P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~  315 (425)
T d1sffa_         240 VQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAGGF--PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  315 (425)
T ss_dssp             TTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGTSS--CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCCCcccee--cccccCCCc--ceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            96531      22344455679998  889998753  567778888887665432221112245777777777777654


Q ss_pred             H--HHHHHHHHHHHHH----HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-------CHHHHHHHHH
Q 009523          399 L--RVQQQNSTALRMA----KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-------DLTATIKFID  465 (532)
Q Consensus       399 ~--r~~~~~~~a~~la----~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g-------~~~~~~~~l~  465 (532)
                      .  ..++..+..+++.    +.++++|.+..|                  +|.|.++.|++..       +......+..
T Consensus       316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v------------------rg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~  377 (425)
T d1sffa_         316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFEDGDHNKPDAKLTAEIVA  377 (425)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE------------------EEETTEEEEEEBGGGCTTSBCHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEE------------------EccccEEEEEEeccCccCCccHHHHHHHHH
Confidence            2  1222223333333    334455554444                  4568899999852       1234455666


Q ss_pred             HcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009523          466 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA  531 (532)
Q Consensus       466 ~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~----ed~~dli~dL~~AL~~  531 (532)
                      .+...++-+..+                         |...+.|||+..+    ++.++.++.|+++|++
T Consensus       378 ~l~~~Gvl~~~~-------------------------g~~~n~i~~~PpL~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         378 RARDKGLILLSC-------------------------GPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             HHHHTTEECEEE-------------------------STTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEecc-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            654444332211                         1224678888654    4456666667777764

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.44  E-value=3.2e-12  Score=134.06  Aligned_cols=213  Identities=15%  Similarity=0.118  Sum_probs=131.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHhccCCCE-------EEEcCCCCcchHHHHHHhcccCCcEEEEe
Q 009523          199 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH-------IVTTTDCYRKTRIFIETVLPKMGITATVI  271 (532)
Q Consensus       199 ~~p~~~~Le~~lA~l~ga~~~i~~sSG~~Ai~~al~all~~Gd~-------VIv~~~~y~~t~~~~~~~l~~~Gv~v~~v  271 (532)
                      ++|+..+|++++++++|.+.+++++||++|+..+++.++++|++       ++.... |+.+...   .....|.....+
T Consensus        73 ~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~-h~~t~~~---~~~~~g~~~~~~  148 (465)
T d1ax4a_          73 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNF-HFDTTAA---HVELNGCKAINI  148 (465)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESS-CCHHHHH---HHHHTTCEEEEC
T ss_pred             cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccc-hhhhhHH---HHHHcCCeeecc
Confidence            58999999999999999999999999999999999998876543       344433 4333221   112234443332


Q ss_pred             C---------------CCCHHHHHHhhcC---CCeeEEEEeCCCCCCCc-ccC---HHHHHHHHHhCCCEEEEECCCCCC
Q 009523          272 D---------------PADMEGLEAALNN---NNVSLFFTESPTNPFLR-CVD---VKLVSDLCHKKGAIVCIDGTFATP  329 (532)
Q Consensus       272 d---------------~~dle~Le~al~~---~~tklV~lesP~NptG~-v~d---l~~I~~la~~~gi~lIvDet~a~~  329 (532)
                      .               ..|+++|++++++   ..+.+++++.++|..|. +.+   +++|.++|++||+++|+|+++..+
T Consensus       149 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~  228 (465)
T d1ax4a_         149 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  228 (465)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhh
Confidence            1               1278999998853   24677777777766543 343   678999999999999999995421


Q ss_pred             C------------cccc------cccCCcEEEECCccccCCCCCcEEEEEEeChH--HHHHHHHHh---hhcC--CCccH
Q 009523          330 L------------NQKA------LSLGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLH---HVLG--GALNP  384 (532)
Q Consensus       330 ~------------~~~~------l~~gaDivv~S~sK~lgg~gd~~gG~lv~~~~--li~~l~~~~---~~~G--~~~~~  384 (532)
                      .            ....      ....+|++..|.+|.+++++   +|+++.+++  +........   ...+  .....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (465)
T d1ax4a_         229 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG  305 (465)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred             hhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCCcchhhH
Confidence            0            0000      01126899999999988775   678877653  223222211   1111  11122


Q ss_pred             HHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhC
Q 009523          385 NAAYLIIRGMKT--LHLRVQQQNSTALRMAKILEAH  418 (532)
Q Consensus       385 ~~a~l~l~~l~t--l~~r~~~~~~~a~~la~~L~~~  418 (532)
                      .....+...+..  ....+++..++++++.+.|++.
T Consensus       306 ~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~  341 (465)
T d1ax4a_         306 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA  341 (465)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            221111112211  1234455567788899999875

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=8.6e-12  Score=124.72  Aligned_cols=282  Identities=8%  Similarity=-0.085  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHHhhhCCCc--E-EEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAES--T-VIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~--~-i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ...+..++.|++++++++  . +++++++ .++.+++..+..+++.+++....+.+.  .+....+..|..+.....   
T Consensus        46 ~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  123 (360)
T d1bjna_          46 QVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAA--SAIKEAKKYCTPNVFDAKVTV  123 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTSEEEEEECEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhh--hhHHHHhhcCccceeeccccC
Confidence            346778999999999842  4 4444444 445555556677788887776555443  344556777776665542   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~l  350 (532)
                        .+.+.+++.+.. +++++++...+|.||...+++.+.  ++.+++++++|.+.+.+ ...+.  .++|+++.|.+|.+
T Consensus       124 ~~~~~~~~~~~~~~-~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~--~~~dv~~~ss~k~~  198 (360)
T d1bjna_         124 DGLRAVKPMREWQL-SDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDV--SRYGVIYAGAQKNI  198 (360)
T ss_dssp             TTEEEECCGGGCCC-CSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCG--GGCSEEEEETTTTT
T ss_pred             CCcchhhhhhhhcc-CCceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeee--ccceeEEEEccccc
Confidence              234555555655 688888888899999999887664  56788999999997643 33333  45789999999999


Q ss_pred             CCCCCcEEEEEEeChHHH------------HHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKLV------------TQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~li------------~~l~~~~~~~G~~~~~~~a~l~l~~l~-----tl~~r~~~~~~~a~~la~  413 (532)
                      ++++.  +|+++..+...            ...............+....+....+.     ....+.+++.+.+..+.+
T Consensus       199 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1bjna_         199 GPAGL--TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYG  276 (360)
T ss_dssp             SSTTC--EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC--ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            98762  44444332111            111111111112222221111111111     122233334444444455


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      .+...........+      .        ....++++|.++++ .....|++.|+..++.+..|.             ..
T Consensus       277 ~~~~~~~~~~~~~~------~--------~rs~~v~~f~~~~~-~~~~~~~~~l~~~Gi~~~~G~-------------~~  328 (360)
T d1bjna_         277 VIDNSDFYRNDVAK------R--------NRSRMNVPFQLADS-ALDKLFLEESFAAGLHALKGH-------------RV  328 (360)
T ss_dssp             HHHHCSSEECCBCG------G--------GBCSSEEEEEESSG-GGHHHHHHHHHHTTEECCBCC-------------TT
T ss_pred             hhhccccccccCCc------c--------cccceEEEEEcCCc-ccHHHHHHHHHHCCCEeecCC-------------Cc
Confidence            55544332111111      1        11346899999754 344566666666677665551             10


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                                  -+.+|+|++...+++.++.|.++|++
T Consensus       329 ------------~g~~Ris~~~~~t~edV~~li~~l~e  354 (360)
T d1bjna_         329 ------------VGGMRASIYNAMPLEGVKALTDFMVE  354 (360)
T ss_dssp             ------------TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ------------cCeEEEEecCCCCHHHHHHHHHHHHH
Confidence                        12489999887666666666666653

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=4.1e-11  Score=125.80  Aligned_cols=277  Identities=13%  Similarity=0.098  Sum_probs=157.5

Q ss_pred             chhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHhc----------------------------cCCCEEEEcCCC
Q 009523          200 NPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV----------------------------PAGGHIVTTTDC  249 (532)
Q Consensus       200 ~p~~~~Le~~lA~l~ga--~~~i~~sSG~~Ai~~al~all----------------------------~~Gd~VIv~~~~  249 (532)
                      ....++|.++|.++.+.  +.+++++||++|+..+++...                            .+...||.....
T Consensus        99 ~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~s  178 (461)
T d1ohwa_          99 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGA  178 (461)
T ss_dssp             TTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTC
T ss_pred             HHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCC
Confidence            34456666666665543  578899999999999887432                            223478888889


Q ss_pred             CcchH-HHHH--------H-hcccCCcEEEEeCC-----------------CCHHHHHHhhc-----CCCeeEEEEeCCC
Q 009523          250 YRKTR-IFIE--------T-VLPKMGITATVIDP-----------------ADMEGLEAALN-----NNNVSLFFTESPT  297 (532)
Q Consensus       250 y~~t~-~~~~--------~-~l~~~Gv~v~~vd~-----------------~dle~Le~al~-----~~~tklV~lesP~  297 (532)
                      |+|.. ..+.        . .....+..+.....                 .+.+++++.+.     ..++.+|++|...
T Consensus       179 yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~  258 (461)
T d1ohwa_         179 FHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQ  258 (461)
T ss_dssp             CCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSB
T ss_pred             cCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecccc
Confidence            88832 1110        1 01111111111110                 01344555442     2368999999988


Q ss_pred             CCCCcccC----HHHHHHHHHhCCCEEEEECCCCCC------Cccccccc--CCcEEEECCccccCCCCCcEEEEEEeCh
Q 009523          298 NPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSL--GADLVLHSATKFIGGHNDVLAGSISGSG  365 (532)
Q Consensus       298 NptG~v~d----l~~I~~la~~~gi~lIvDet~a~~------~~~~~l~~--gaDivv~S~sK~lgg~gd~~gG~lv~~~  365 (532)
                      ...|.+.+    +++|.++|++||+++|+||++...      +.+.....  -+|+++  ++|.+++      |++....
T Consensus       259 g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~~~~  330 (461)
T d1ohwa_         259 SEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFFHKE  330 (461)
T ss_dssp             CTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEEECG
T ss_pred             ccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------ccccccc
Confidence            77776654    889999999999999999996432      22232332  368887  7899874      3333333


Q ss_pred             HHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH----hCCC-ceEEeCCCCCCCchhhhH
Q 009523          366 KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE----AHPK-VKRVHYPGLKSHPEHHIA  438 (532)
Q Consensus       366 ~li~~l~~~~~~~G~~~~~~~a~l~l~~l~tl~~--r~~~~~~~a~~la~~L~----~~p~-v~~V~~Pgl~s~p~~~l~  438 (532)
                      .+... ...........+|..+.+++..++.+..  .+++..+..+++.+.|+    ++|. |..|              
T Consensus       331 ~~~~~-~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v--------------  395 (461)
T d1ohwa_         331 EFRPN-APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV--------------  395 (461)
T ss_dssp             GGSCS-STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE--------------
T ss_pred             ccccc-cccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEe--------------
Confidence            22110 0111111123457777776666666542  12223333334444443    3332 2222              


Q ss_pred             hhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe----c
Q 009523          439 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF----G  514 (532)
Q Consensus       439 ~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSv----G  514 (532)
                          +|.|.|+.|++++ .....++...+...|+-+...                           .++.|||.-    .
T Consensus       396 ----rG~Gl~~~ie~~~-~~~~~~i~~~~~~~Gll~~~~---------------------------~~~~ir~~PpL~it  443 (461)
T d1ohwa_         396 ----RGRGTFCSFDTPD-ESIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPTLVFR  443 (461)
T ss_dssp             ----EEETTEEEEECSS-HHHHHHHHHHHHHTTEECEEE---------------------------TTTEEECCCCTTCC
T ss_pred             ----eeeeEEEEEEcCC-HHHHHHHHHHHHHCCeEEeeC---------------------------CCCEEEEeCCcCCC
Confidence                4678899999974 455666777665445432211                           134566653    3


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 009523          515 VEDFEDLKADVLQALHA  531 (532)
Q Consensus       515 ~ed~~dli~dL~~AL~~  531 (532)
                      .++.+.+++.|+++|.+
T Consensus       444 ~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         444 DHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            46677888888888764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.33  E-value=1.7e-11  Score=123.71  Aligned_cols=280  Identities=9%  Similarity=-0.022  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHhhhCCCc---EEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAES---TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~~---~i~~sSG~-~Ai~~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ...++.++.|+++++.++   ++++++++ .++.+++..+..+|+++++.....  ....+...++..|..+..+..   
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~--~~~~~~~~~~~~g~~~~~~~~~~~  125 (361)
T d2c0ra1          48 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGS--WASKALKEAKLIGDTHVAASSEAS  125 (361)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSH--HHHHHHHHHHHHSCEEEEEECGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeech--hhhhhhhhhhhcCceeeeeccccc
Confidence            456778999999999843   45545544 566677777888899887665333  333454567777888777653   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~l  350 (532)
                        .+++.+++.+...  +.+++   +|.||.+.|+++|.++|+++|+++++|.+++.+ .+++..++  |+.+.|.+|.+
T Consensus       126 ~~~~~~~~~~~~~~~--~~~~v---~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~  198 (361)
T d2c0ra1         126 NYMTLPKLQEIQLQD--NAAYL---HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNL  198 (361)
T ss_dssp             TTCSCCCGGGCCCCT--TEEEE---EEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTT
T ss_pred             cccchhhhhhhcccC--cceEE---EEecccceecceEEEeeccCCceEEEEeeccccccccccccc--eeEEEeccccc
Confidence              3567777777653  34444   567899999999999999999999999997654 44555554  56666789999


Q ss_pred             CCCCCcEEEEEEeChHH------------HHHHHHHhhhcCCCccHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHH
Q 009523          351 GGHNDVLAGSISGSGKL------------VTQIRNLHHVLGGALNPNAAYLIIR-----GMKTLHLRVQQQNSTALRMAK  413 (532)
Q Consensus       351 gg~gd~~gG~lv~~~~l------------i~~l~~~~~~~G~~~~~~~a~l~l~-----~l~tl~~r~~~~~~~a~~la~  413 (532)
                      ++++.  +|+++..+.+            ................+........     .......+..++...+..+..
T Consensus       199 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (361)
T d2c0ra1         199 GPSGV--TVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYD  276 (361)
T ss_dssp             CCSSC--EEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccC--cEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhh
Confidence            88762  3333332211            1111111111111111111111111     111122333344444555555


Q ss_pred             HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccccccCccccccC
Q 009523          414 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD  493 (532)
Q Consensus       414 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~~~sl~~~pa~~s~~~  493 (532)
                      +........... ..    +.+        ....+++|.++++ .....+...|+..++.+..|.-             .
T Consensus       277 ~~~~~~~~~~~~-~~----~~~--------rS~~~~~~~~~~~-~~~~~~~~~L~~~GI~~~~G~~-------------~  329 (361)
T d2c0ra1         277 AIDQSGGFYRGC-VD----VDS--------RSDMNITFRLASE-ELEKEFVKASEQEGFVGLKGHR-------------S  329 (361)
T ss_dssp             HHHTSTTSSEES-SC----GGG--------BCSSEEEEECSCH-HHHHHHHHHHHHTTEESCBCCT-------------T
T ss_pred             hhhhcccccccC-CC----hhh--------ccceEEEEECCCc-ccHHHHHHHHHHCCCEEecCCC-------------c
Confidence            555443322111 11    111        1235788888753 4556777777777776655511             0


Q ss_pred             CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009523          494 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH  530 (532)
Q Consensus       494 ~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~  530 (532)
                                  -+.+|||+......+.++.|.++|+
T Consensus       330 ------------~g~~RIs~~~~~~~edv~~Lv~~l~  354 (361)
T d2c0ra1         330 ------------VGGLRASIYNAVPYESCEALVQFME  354 (361)
T ss_dssp             ------------TCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ------------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence                        1238999987666666666666665

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=6.4e-10  Score=115.10  Aligned_cols=282  Identities=16%  Similarity=0.117  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCCCCHHHH
Q 009523          203 TVVVEEKMSALEGAEST-VIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  279 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~-i~~sSG~~Ai~~al~al--l~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~~dle~L  279 (532)
                      .-++++.|+++.|-+.+ +-...|.+|...+++..  ....+.++++...|+.+.......++..|++++.++.++....
T Consensus       110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~  189 (437)
T d1wyua1         110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTP  189 (437)
T ss_dssp             HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCC
T ss_pred             HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccch
Confidence            45678999999998643 33456664444333322  2345789999999998887776777888999999886543322


Q ss_pred             HHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC-CCcccccccCCcEEEECCccccC------C
Q 009523          280 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIG------G  352 (532)
Q Consensus       280 e~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~-~~~~~~l~~gaDivv~S~sK~lg------g  352 (532)
                      ...+.+ ++.+|++++|| -.|.+.++++|.+++|+.|.++++|..... .....|-++|+||++.+ +|.||      |
T Consensus       190 ~~~~~~-~~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GG  266 (437)
T d1wyua1         190 LPEVGE-EVGAVVVQNPN-FLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGG  266 (437)
T ss_dssp             CCCCCT-TEEEEEEESSC-TTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGC
T ss_pred             hhhhcc-ceeEEEEcccc-ccccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCc
Confidence            233555 69999999996 579999999999999999998888765322 23356788999999988 55433      3


Q ss_pred             CCCcEEEEEEeChHHHHHHH----------------------------HHhhhcCCCc-cH---H--HHHHHHHhHHHHH
Q 009523          353 HNDVLAGSISGSGKLVTQIR----------------------------NLHHVLGGAL-NP---N--AAYLIIRGMKTLH  398 (532)
Q Consensus       353 ~gd~~gG~lv~~~~li~~l~----------------------------~~~~~~G~~~-~~---~--~a~l~l~~l~tl~  398 (532)
                      ++   +|++.+++++...+.                            +.......+. ..   .  ..|+...|-+-+.
T Consensus       267 P~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~  343 (437)
T d1wyua1         267 PH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (437)
T ss_dssp             SC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc---cccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHH
Confidence            33   688888776543321                            1111001111 11   1  2344444444455


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCC
Q 009523          399 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG  478 (532)
Q Consensus       399 ~r~~~~~~~a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~G~~vsf~l~g~~~~~~~~l~~L~~~~i~vs~G~  478 (532)
                      ..-++...++.++++.|.+.+++. +.+++-               +-.-+.++++.+.   ..+.++|...++  ..|-
T Consensus       344 ~ia~~a~~~A~yl~~~L~~~~g~~-~~~~~~---------------~f~ef~v~~~~~~---~~i~k~L~d~G~--~~~~  402 (437)
T d1wyua1         344 EVALKSVEMAHKLHALLLEVPGVR-PFTPKP---------------FFNEFALALPKDP---EAVRRALAERGF--HGAT  402 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCE-ECSCSS---------------BCSEEEEECSSCH---HHHHHHHHHTTC--CCCE
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCee-ccCCCC---------------eeeEEEEECCCCH---HHHHHHHHhCCC--CCCc
Confidence            445666788999999998887765 323321               1123445554333   333344432232  1110


Q ss_pred             cccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009523          479 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA  531 (532)
Q Consensus       479 ~~sl~~~pa~~s~~~~~~~~~~~~gi~~~~IRlSvG~ed~~dli~dL~~AL~~  531 (532)
                      .    ..|                -+.++.+.+++.-.++++.|+.|.++|++
T Consensus       403 ~----~~~----------------~~~~~~lli~~TE~~tkeeiD~~v~al~e  435 (437)
T d1wyua1         403 P----VPR----------------EYGENLALFAATELHEEEDLLALREALKE  435 (437)
T ss_dssp             E----CCT----------------TSCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             c----ccc----------------CCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            0    001                01357888999877777888888888875

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.26  E-value=1.2e-11  Score=124.36  Aligned_cols=146  Identities=9%  Similarity=-0.060  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHH-HHHHHhccCCCEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC---
Q 009523          201 PTTVVVEEKMSALEGAE--STVIMASGM-SAST-VMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  273 (532)
Q Consensus       201 p~~~~Le~~lA~l~ga~--~~i~~sSG~-~Ai~-~al~all~~Gd~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~---  273 (532)
                      ...++.++.|+++++++  ..+++++|+ +++. ++...+..+++.+++....+.+..  +...+...+..+.....   
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~  125 (360)
T d1w23a_          48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEK--ALKEAKLLGETHIAASTKAN  125 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHTTSEEEEEEECGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhh--hHHHHHHhhhcceeeccccc
Confidence            35677899999999984  356666665 4443 444455677888887765554433  22345556665554432   


Q ss_pred             --CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCCC-CcccccccCCcEEEECCcccc
Q 009523          274 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI  350 (532)
Q Consensus       274 --~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~~-~~~~~l~~gaDivv~S~sK~l  350 (532)
                        .+++.++..+..  ...+++   .|.||.+.|+++|.++||++|+++|+|.+++.+ ...+..++++|++..+.+|++
T Consensus       126 ~~~~~~~~~~~~~~--~~~~~~---~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~  200 (360)
T d1w23a_         126 SYQSIPDFSEFQLN--ENDAYL---HITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGP  200 (360)
T ss_dssp             TSCSCCCGGGCCCC--TTEEEE---EEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSC
T ss_pred             cccchhhhhhcccc--ccccee---EecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeecccccc
Confidence              234444444433  344444   466799999999999999999999999997654 456667788888877777765


Q ss_pred             CCC
Q 009523          351 GGH  353 (532)
Q Consensus       351 gg~  353 (532)
                      +|+
T Consensus       201 ~~~  203 (360)
T d1w23a_         201 SGV  203 (360)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            544

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.31  E-value=5.1e-06  Score=86.15  Aligned_cols=215  Identities=19%  Similarity=0.163  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhhhCCCcE-EEeCCHHHHH-HHHHHHh---ccCC----CEEEEcCCCCcchHHHHHHhcccCCcEEEEeCC
Q 009523          203 TVVVEEKMSALEGAEST-VIMASGMSAS-TVMLLAL---VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  273 (532)
Q Consensus       203 ~~~Le~~lA~l~ga~~~-i~~sSG~~Ai-~~al~al---l~~G----d~VIv~~~~y~~t~~~~~~~l~~~Gv~v~~vd~  273 (532)
                      .-+++..|++|.|-+-+ .-.-.|..|. ..++++.   -+.|    ..+++..+.+..+....   ....+..+..++.
T Consensus       108 lfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  184 (471)
T d1wyub1         108 MWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT---ASMAGYQVREIPS  184 (471)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH---HHHTTCEEEEECB
T ss_pred             HHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeee---eecccceeecccc
Confidence            34568999999998632 2223443222 2222222   1222    23455556666544332   2233455544432


Q ss_pred             -----CCHHHHHHhhcCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEECCCCC--CCcccccccCCcEEEECC
Q 009523          274 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLHSA  346 (532)
Q Consensus       274 -----~dle~Le~al~~~~tklV~lesP~NptG~v~dl~~I~~la~~~gi~lIvDet~a~--~~~~~~l~~gaDivv~S~  346 (532)
                           .|.+.+.....+ ++.++++++|++..+...+.+++++++|+.+..+++|.+...  .....|-..|+|+++...
T Consensus       185 ~~~~~~~~~~~~~~~~~-~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~  263 (471)
T d1wyub1         185 GPEGEVDLEALKRELGP-HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNL  263 (471)
T ss_dssp             CTTSSBCHHHHHHHCST-TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCT
T ss_pred             cccccccchhhhhhhhc-cccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCccccccccccc
Confidence                 367888877776 699999999987655555699999999999998888876322  223456677889988888


Q ss_pred             ccccCCC---CCcEEEEEEeChHHHHHHHHH-------------------hhhcCCCccHH-----HHHHHHHhHHHHHH
Q 009523          347 TKFIGGH---NDVLAGSISGSGKLVTQIRNL-------------------HHVLGGALNPN-----AAYLIIRGMKTLHL  399 (532)
Q Consensus       347 sK~lgg~---gd~~gG~lv~~~~li~~l~~~-------------------~~~~G~~~~~~-----~a~l~l~~l~tl~~  399 (532)
                      ++.+|.+   |+.-.|++..++++..++...                   ++...++...+     ..|+.+.|-+-+..
T Consensus       264 ~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~e  343 (471)
T d1wyub1         264 HKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKK  343 (471)
T ss_dssp             TTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHH
Confidence            8866532   222367888887776544210                   00111111111     23444444444544


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCce
Q 009523          400 RVQQQNSTALRMAKILEAHPKVK  422 (532)
Q Consensus       400 r~~~~~~~a~~la~~L~~~p~v~  422 (532)
                      --++...++.++++.|+. +++.
T Consensus       344 lA~~~~~~A~Yla~~L~~-~G~~  365 (471)
T d1wyub1         344 AAALAVLNARYLKELLKE-KGYR  365 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCB
T ss_pred             HHHHHHHHHHHHHHHHhh-cCce
Confidence            445667889999999976 5554