Citrus Sinensis ID: 009527

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--

MAMARRMATFICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSDMNRPVEA

cHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEEEccHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHEEEEEEEEcccEEccccHHHcccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccHccccccccEcccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccEEEEEEEccHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEccccEEHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc

MAMARRMATFICLFVVGLSfaaagdvtlddddsspnipgcnnklqlVKVKNwvdnvegesfagltarfglplpsdaakafklpavlsnplnccstaskLSGSIAlsmrgdcafTTKAEVAQAAGAAALVVINDEEDLYKMVCSendtalnisipvlmipksrgdalnkSIADKQRVELLlyapnrpdvdFAVIFLWMMAVGTIIAAALWSLLTseqtderynelspkessnleavkddsekEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKcrncgrktvhlplldevSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVArgdnsggesipmllriprlfdpwggydmigfgdilfPGLLICFAFrydkenkkgvVKGYFLWLIIGYGFGLFLTYLGLYLmnghgqpallyLVPCTLGLTVILGLARGELKHlwdysrepssdmnrpvea

MAMARRMATFICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERynelspkessnleavkddsekEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGdnsggesiPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKhlwdysrepssdmnrpvea

MAMARRMATFICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKaevaqaagaaalvvINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHlplldevsvlslvvllfcvvfavvwavRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIgygfglfltylglylMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSDMNRPVEA

******MATFICLFVVGLSFAAAGDVTLD******NIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLT*****************************VLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDY**************

******M**FICLFVVGLSFAAAGDVT***********GCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKE********DDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLW****************

MAMARRMATFICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSE**************************EVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSR************

**MARRMATFICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERY********************EVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYS*************

iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		532	2.2.26 [Sep-21-2011]
Q9MA44		536	Signal peptide peptidase-	yes	no	0.943	0.936	0.662	0.0
Q53P98		534	Signal peptide peptidase-	yes	no	0.921	0.917	0.631	0.0
Q4V3B8		540	Signal peptide peptidase-	no	no	0.949	0.935	0.662	0.0
Q5Z413		542	Signal peptide peptidase-	yes	no	0.919	0.902	0.506	1e-144
Q0WMJ8		540	Signal peptide peptidase-	no	no	0.958	0.944	0.507	1e-144
Q8W469		540	Signal peptide peptidase-	no	no	0.926	0.912	0.504	1e-142
Q5N808		523	Signal peptide peptidase-	no	no	0.913	0.929	0.497	1e-140
Q0DWA9		545	Signal peptide peptidase-	no	no	0.911	0.889	0.503	1e-138
Q5F383		596	Signal peptide peptidase-	yes	no	0.798	0.713	0.344	2e-59
Q5PQL3		577	Signal peptide peptidase-	yes	no	0.753	0.694	0.341	6e-58

>sp\|Q9MA44\|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1	Back alignment and function desciption

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/506 (66%), Positives = 415/506 (82%), Gaps = 4/506 (0%)

Query: 31  DDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPL 90
           D ++P IPGC+N+ Q+VKV+NWV+   GE+F  +TA+FG  LPSD  KA KLP  L+ PL
Sbjct: 31  DVTAPKIPGCSNEFQMVKVENWVNGENGETFTAMTAQFGTMLPSDKDKAVKLPVALTTPL 90

Query: 91  NCCST-ASKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTAL 149
           + CS   SKLS SIALS+RG+CAFT KA+VAQA GAAALV+IND+E+L +MVC E DT+L
Sbjct: 91  DSCSNLTSKLSWSIALSVRGECAFTVKAQVAQAGGAAALVLINDKEELDEMVCGEKDTSL 150

Query: 150 NISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALW 209
           N+SIP+LMI  S GDAL KSI   ++VELLLYAP  P VD+AV+FLW+M+VGT+  A++W
Sbjct: 151 NVSIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMSVGTVFVASVW 210

Query: 210 SLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFF 268
           S +TS ++ DE+Y+ELSPK+SSN++A K  +E+E LDI+A GA++FVI ASTFLVLL+FF
Sbjct: 211 SHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVIFVISASTFLVLLFFF 270

Query: 269 MSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFC 328
           MSSWF+ +L + F IGG++GMHNI VTL+  +C  CG+K + LPLL   S+LSLVVLLFC
Sbjct: 271 MSSWFILILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNTSILSLVVLLFC 330

Query: 329 VVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFV 388
            V A++W + R+ S++W GQDI GIC+MI VLQ+ARLPNI+VA++LLCCAF YDIFWVF+
Sbjct: 331 FVVAILWFMNRKTSHAWAGQDIFGICMMINVLQVARLPNIRVATILLCCAFFYDIFWVFI 390

Query: 389 SPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFR 448
           SPLIF +SVMIAVARG    GESIPMLLRIPRL DPWGGY+MIGFGDILFPGLLICF FR
Sbjct: 391 SPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLSDPWGGYNMIGFGDILFPGLLICFIFR 450

Query: 449 YDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLA 508
           +DKEN KGV  GYF WL+ GYG GLFLTYLGLY+MNGHGQPALLYLVPCTLG+TVILGL 
Sbjct: 451 FDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPALLYLVPCTLGITVILGLV 510

Query: 509 RGELKHLWDY-SREPS-SDMNRPVEA 532
           R EL+ LW+Y +++PS +D+N   EA
Sbjct: 511 RKELRDLWNYGTQQPSAADVNPSPEA 536

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp\|Q53P98\|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q4V3B8\|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q5Z413\|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q0WMJ8\|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1	Back alignment and function description

>sp\|Q8W469\|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q5N808\|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q0DWA9\|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1	Back alignment and function description

>sp\|Q5F383\|SPP2B_CHICK Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1	Back alignment and function description

>sp\|Q5PQL3\|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
224065040		540	predicted protein [Populus trichocarpa]	0.962	0.948	0.706	0.0
118481059		540	unknown [Populus trichocarpa]	0.962	0.948	0.706	0.0
225433716		533	PREDICTED: signal peptide peptidase-like	0.934	0.932	0.728	0.0
297843376		536	hypothetical protein ARALYDRAFT_887775 [	0.984	0.977	0.654	0.0
356527443		530	PREDICTED: signal peptide peptidase-like	0.917	0.920	0.692	0.0
356569121		530	PREDICTED: signal peptide peptidase-like	0.928	0.932	0.680	0.0
449441173		541	PREDICTED: signal peptide peptidase-like	0.953	0.937	0.702	0.0
255577618		535	Minor histocompatibility antigen H13, pu	0.924	0.919	0.689	0.0
297828007		541	protease-associated domain-containing pr	0.951	0.935	0.664	0.0
356534514		520	PREDICTED: signal peptide peptidase-like	0.904	0.925	0.674	0.0

>gi\|224065040\|ref\|XP_002301641.1\| predicted protein [Populus trichocarpa] gi\|222843367\|gb\|EEE80914.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/518 (70%), Positives = 430/518 (83%), Gaps = 6/518 (1%)

Query: 10  FICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFG 69
           F  LF++GLSFA         D  SP  PGC++   LVKVKNW   VEGE+FAG+TARFG
Sbjct: 20  FSFLFLIGLSFAEEAS----HDGDSPKFPGCDHPYNLVKVKNWAHGVEGETFAGITARFG 75

Query: 70  LPLPSDAAKAFKLPAVLSNPLN-CCSTASKLSGSIALSMRGDCAFTTKAEVAQAAGAAAL 128
           + LP +   +++L AV SNPLN C  ++SKLSGSIA+++RG C FTTKAEVAQ+ GAAAL
Sbjct: 76  VFLPKEEKNSYRLTAVFSNPLNGCSPSSSKLSGSIAMAVRGGCDFTTKAEVAQSGGAAAL 135

Query: 129 VVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDV 188
           +VINDEE+L +M C +  +A +ISIPV++IPKS G +LNKSI + Q+VELL YAP RP V
Sbjct: 136 LVINDEEELAEMGCEKGTSAQDISIPVVLIPKSGGQSLNKSIVNGQKVELLFYAPVRPPV 195

Query: 189 DFAVIFLWMMAVGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDIT 247
           D +VIFLW+MAVGT++ A++WS +  SE+T+ERYNELSPKE+SN  A KDD+EKEV+DI 
Sbjct: 196 DLSVIFLWIMAVGTVVCASVWSEIAASEETNERYNELSPKETSNASAFKDDTEKEVIDIN 255

Query: 248 AKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRK 307
            K AIVFVI AS FL+LLYFFMSSWFVWLL+VLFCIGGIEGMHN I T++L  CRNCGRK
Sbjct: 256 VKSAIVFVITASAFLLLLYFFMSSWFVWLLIVLFCIGGIEGMHNCITTVILRICRNCGRK 315

Query: 308 TVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPN 367
            ++LPL  E S+ SL+VL+ CVVF+ VWA+ RQASYSW GQDILGICLMITVLQ+ARLPN
Sbjct: 316 KLNLPLFGETSLFSLLVLICCVVFSTVWAINRQASYSWAGQDILGICLMITVLQVARLPN 375

Query: 368 IKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGG 427
           IKVA+VLLCCAFVYDIFWVF+SP+IFH+SVMIAVARGDNSGGE+IPMLLRIPR  D WGG
Sbjct: 376 IKVATVLLCCAFVYDIFWVFLSPIIFHQSVMIAVARGDNSGGETIPMLLRIPRFADEWGG 435

Query: 428 YDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHG 487
           YDMIGFGDILFPGLL+ FAFRYDK NKKG+  GYFLWL IGYG GLFLTYLGLYLM+GHG
Sbjct: 436 YDMIGFGDILFPGLLVSFAFRYDKANKKGIANGYFLWLTIGYGVGLFLTYLGLYLMDGHG 495

Query: 488 QPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSD 525
           QPALLYLVPCTLGL ++LGL RGELK LW+YS E +S 
Sbjct: 496 QPALLYLVPCTLGLCILLGLVRGELKDLWNYSSEDASS 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|118481059\|gb\|ABK92483.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225433716\|ref\|XP_002268575.1\| PREDICTED: signal peptide peptidase-like 2B [Vitis vinifera] gi\|296089635\|emb\|CBI39454.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297843376\|ref\|XP_002889569.1\| hypothetical protein ARALYDRAFT_887775 [Arabidopsis lyrata subsp. lyrata] gi\|297335411\|gb\|EFH65828.1\| hypothetical protein ARALYDRAFT_887775 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356527443\|ref\|XP_003532320.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|356569121\|ref\|XP_003552754.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|449441173\|ref\|XP_004138358.1\| PREDICTED: signal peptide peptidase-like 5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255577618\|ref\|XP_002529686.1\| Minor histocompatibility antigen H13, putative [Ricinus communis] gi\|223530834\|gb\|EEF32697.1\| Minor histocompatibility antigen H13, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297828007\|ref\|XP_002881886.1\| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297327725\|gb\|EFH58145.1\| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356534514\|ref\|XP_003535798.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
TAIR\|locus:2198733		536	SPPL5 "SIGNAL PEPTIDE PEPTIDAS	0.984	0.977	0.565	5.3e-159
TAIR\|locus:2040971		540	SPPL3 "SIGNAL PEPTIDE PEPTIDAS	0.971	0.957	0.581	2.6e-157
TAIR\|locus:2198155		540	SPPL4 "SIGNAL PEPTIDE PEPTIDAS	0.951	0.937	0.452	2.2e-112
TAIR\|locus:2026684		540	SPPL2 "SIGNAL PEPTIDE PEPTIDAS	0.932	0.918	0.438	1.8e-110
ZFIN\|ZDB-GENE-030131-4265		564	sppl2 "signal peptide peptidas	0.802	0.757	0.304	4.8e-46
UNIPROTKB\|F1S8G9		585	LOC100515648 "Uncharacterized	0.821	0.747	0.299	6.4e-44
UNIPROTKB\|E1BKF8		583	SPPL2B "Uncharacterized protei	0.802	0.732	0.300	1.7e-43
UNIPROTKB\|F1Q1B4		580	SPPL2B "Uncharacterized protei	0.798	0.732	0.298	1.7e-43
UNIPROTKB\|J9P0Q5		650	SPPL2B "Uncharacterized protei	0.798	0.653	0.298	1.7e-43
UNIPROTKB\|Q8TCT7		592	SPPL2B "Signal peptide peptida	0.851	0.765	0.292	1.7e-43

TAIR\|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
 Identities = 301/532 (56%), Positives = 378/532 (71%)

Query:     5 RRMATFICLFVVGLSFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGL 64
             R +A    L+++GL    A D     D ++P IPGC+N+ Q+VKV+NWV+   GE+F  +
Sbjct:     9 RLLAAAAALYLIGLLCVGA-DTK---DVTAPKIPGCSNEFQMVKVENWVNGENGETFTAM 64

Query:    65 TARFGLPLPSDAAKAFKLPAVLSNPLNCCST-ASKLSGSIALSMRGDCAFTTKXXXXXXX 123
             TA+FG  LPSD  KA KLP  L+ PL+ CS   SKLS SIALS+RG+CAFT K       
Sbjct:    65 TAQFGTMLPSDKDKAVKLPVALTTPLDSCSNLTSKLSWSIALSVRGECAFTVKAQVAQAG 124

Query:   124 XXXXXXXINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAP 183
                    IND+E+L +MVC E DT+LN+SIP+LMI  S GDAL KSI   ++VELLLYAP
Sbjct:   125 GAAALVLINDKEELDEMVCGEKDTSLNVSIPILMITTSSGDALKKSIMQNKKVELLLYAP 184

Query:   184 NRPDVDFAVIFLWMMAVGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKE 242
               P VD+AV+FLW+M+VGT+  A++WS +TS ++ DE+Y+ELSPK+SSN++A K  +E+E
Sbjct:   185 KSPIVDYAVVFLWLMSVGTVFVASVWSHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEE 244

Query:   243 VLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCR 302
              LDI+A GA++FVI ASTFLVLL+FFMSSWF+ +L + F IGG++GMHNI VTL+  +C 
Sbjct:   245 TLDISAMGAVIFVISASTFLVLLFFFMSSWFILILTIFFVIGGMQGMHNINVTLITRRCS 304

Query:   303 NCGRKTVHXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQASYSWVGQDILGICLMITVLQM 362
              CG+K +                             R+ S++W GQDI GIC+MI VLQ+
Sbjct:   305 KCGQKNLKLPLLGNTSILSLVVLLFCFVVAILWFMNRKTSHAWAGQDIFGICMMINVLQV 364

Query:   363 ARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLF 422
             ARLPNI+VA++LLCCAF YDIFWVF+SPLIF +SVMIAVARG    GESIPMLLRIPRL 
Sbjct:   365 ARLPNIRVATILLCCAFFYDIFWVFISPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLS 424

Query:   423 DPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXX 482
             DPWGGY+MIGFGDILFPGLLICF FR+DKEN KGV  GYF WL+                
Sbjct:   425 DPWGGYNMIGFGDILFPGLLICFIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYV 484

Query:   483 MNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDY-SREPSS-DMNRPVEA 532
             MNGHGQPALLYLVPCTLG+TVILGL R EL+ LW+Y +++PS+ D+N   EA
Sbjct:   485 MNGHGQPALLYLVPCTLGITVILGLVRKELRDLWNYGTQQPSAADVNPSPEA 536

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR\|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-4265 sppl2 "signal peptide peptidase-like 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BKF8 SPPL2B "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA44	SIPL5_ARATH	3, ., 4, ., 2, 3, ., -	0.6620	0.9436	0.9365	yes	no
Q5Z413	SIPL5_ORYSJ	3, ., 4, ., 2, 3, ., -	0.5061	0.9191	0.9022	yes	no
Q53P98	SIPL2_ORYSJ	3, ., 4, ., 2, 3, ., -	0.6315	0.9210	0.9176	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		532
pfam04258		291	pfam04258, Peptidase_A22B, Signal peptide peptidas	1e-106
cd02132		139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	1e-68
smart00730		249	smart00730, PSN, Presenilin, signal peptide peptid	5e-67
cd02123		153	cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a	3e-15
cd00538		126	cd00538, PA, PA: Protease-associated (PA) domain	2e-14
cd02126		126	cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as	3e-14
cd04818		118	cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas	7e-13
pfam02225		96	pfam02225, PA, PA domain	9e-13
cd02129		120	cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as	7e-11
cd02125		127	cd02125, PA_VSR, PA_VSR: Protease-associated (PA)	8e-11
cd02127		118	cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-	7e-09
cd04813		117	cd04813, PA_1, PA_1: Protease-associated (PA) doma	2e-08
cd02133		143	cd02133, PA_C5a_like, PA_C5a_like: Protease-associ	2e-08
cd02122		138	cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a	8e-08
cd04816		122	cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-	1e-07
cd02130		122	cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as	2e-07
cd02120		126	cd02120, PA_subtilisin_like, PA_subtilisin_like: P	3e-04
cd02124		129	cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso	0.001

>gnl\|CDD\|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase	Back alignment and domain information

 Score =  318 bits (818), Expect = e-106
 Identities = 126/294 (42%), Positives = 162/294 (55%), Gaps = 19/294 (6%)

Query: 238 DSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVW------LLVVLFCIGGIEG-MH 290
            S++E   I ++ AI+F I AS  L+ LY F  S          +L   FCI G      
Sbjct: 1   KSKEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAF 60

Query: 291 NIIVTLV----LSKCRNCGRKTVHLPL-LDEVSVLSLVVLLFCVVFAVVWAVRRQASYSW 345
            I+   +            +K   L L     +   LV LL C+VFAV W V R+    W
Sbjct: 61  LILPPCIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRK--EHW 118

Query: 346 VGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGD 405
           + QDILGI L I V+++ RLPN+KV ++LL   F YDIFWVF+SP IF  SVM+ VA G 
Sbjct: 119 ILQDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGP 178

Query: 406 NSGGESIPMLLRIPRLFD---PWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYF 462
               E +PM L  PRL D    WG + M+G GDI+ PGLLI F  R+D   K    + YF
Sbjct: 179 FDAAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDIS-KNKSSRTYF 237

Query: 463 LWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLW 516
           +  +I YG GL +T++ L L     QPALLYLVPCTLG  +++ L RGELK LW
Sbjct: 238 ISTMIAYGLGLLITFVALNLFK-AAQPALLYLVPCTLGTLLLVALWRGELKKLW 290

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl\|CDD\|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>gnl\|CDD\|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family	Back alignment and domain information

>gnl\|CDD\|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>gnl\|CDD\|238300 cd00538, PA, PA: Protease-associated (PA) domain	Back alignment and domain information

>gnl\|CDD\|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>gnl\|CDD\|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>gnl\|CDD\|216938 pfam02225, PA, PA domain	Back alignment and domain information

>gnl\|CDD\|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>gnl\|CDD\|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>gnl\|CDD\|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>gnl\|CDD\|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>gnl\|CDD\|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>gnl\|CDD\|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>gnl\|CDD\|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>gnl\|CDD\|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>gnl\|CDD\|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>gnl\|CDD\|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		532
KOG2442		541	consensus Uncharacterized conserved protein, conta	100.0
KOG2443		362	consensus Uncharacterized conserved protein [Funct	100.0
PF04258		298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730		249	PSN Presenilin, signal peptide peptidase, family.	100.0
cd02132		139	PA_GO-like PA_GO-like: Protease-associated domain	99.96
cd02129		120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.89
cd02126		126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.88
cd02127		118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.86
cd02122		138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.83
cd02125		127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.83
cd02123		153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	99.83
cd04813		117	PA_1 PA_1: Protease-associated (PA) domain subgrou	99.8
cd04818		118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.79
cd04816		122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.75
cd02130		122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.71
PF06550		283	DUF1119: Protein of unknown function (DUF1119); In	99.71
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.7
cd02124		129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.68
KOG3920		193	consensus Uncharacterized conserved protein, conta	99.64
cd04817		139	PA_VapT_like PA_VapT_like: Protease-associated dom	99.64
COG3389		277	Uncharacterized protein conserved in archaea [Func	99.52
PF02225		101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.48
cd00538		126	PA PA: Protease-associated (PA) domain. The PA dom	99.46
cd02133		143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.37
cd04819		127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.29
cd04815		134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	99.16
cd02120		126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.12
cd02128		183	PA_TfR PA_TfR: Protease-associated domain containi	98.74
cd04822		151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	98.2
cd04814		142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	98.11
cd02121		220	PA_GCPII_like PA_GCPII_like: Protease-associated d	98.05
cd04820		137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	98.02
cd02131		153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	97.86
KOG2736		406	consensus Presenilin [Signal transduction mechanis	95.64
cd04821		157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	94.6
PF01080		403	Presenilin: Presenilin Alzheimer disease; InterPro	93.7

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=7.5e-128  Score=998.46  Aligned_cols=500  Identities=49%  Similarity=0.886  Sum_probs=472.8

Q ss_pred             hhcccCCCcCCCCCCCCCCCCCCCceEEEEEeecCCCCccceeecccCCcCCCCCccccCceeEeEEeCCCCCCCCCCC-
Q 009527           19 SFAAAGDVTLDDDDSSPNIPGCNNKLQLVKVKNWVDNVEGESFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCSTAS-   97 (532)
Q Consensus        19 ~~~~~~d~~~~d~~~~p~~p~c~~~f~lVkv~~~~~g~e~~~~~~~~A~FG~~lp~~~~~a~~~~Lv~~~p~daC~~~~-   97 (532)
                      ....++|..|+|+.. |++|||+|+||++|+.+|+|+.|..++.++.++||..++...+++...++..++|.|.|++++ 
T Consensus        14 ~~v~a~~~~~~~~~~-~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~   92 (541)
T KOG2442|consen   14 SFVTAGDGGHTGNSH-PKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS   92 (541)
T ss_pred             heEeecccccccccc-cCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc
Confidence            566889999998888 999999999999999999999999999999999999999888878888888999999999988 


Q ss_pred             CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcchhcccCCCCCCCcccceEEEechHhHHHHHHHhcccceEE
Q 009527           98 KLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVE  177 (532)
Q Consensus        98 ~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~  177 (532)
                      +++|+++++.||||+|++|+++||++||+|++|.||.+++..|+|.+.++..+++||++||++++|+++.+....+++|+
T Consensus        93 kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~  172 (541)
T KOG2442|consen   93 KLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVE  172 (541)
T ss_pred             cccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEE
Confidence            99999999999999999999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             EEeecCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc-chhhhHhhhhcCCCCCCccccccccCcccceecCccchhhhHH
Q 009527          178 LLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLT-SEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVI  256 (532)
Q Consensus       178 V~l~~p~~p~vD~s~~~l~lmAv~tI~~gs~~S~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~f~v  256 (532)
                      +++|+|++|.+|++++++|+|||+||.+|+|||+++ ||+..|+++.++|..++ +++.+|++|++..++|+..|+.|++
T Consensus       173 ~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~-~~~~~~~~e~~~vd~s~i~~~~fvv  251 (541)
T KOG2442|consen  173 LALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSS-EGNTKETKEEEVVDISPITAVFFVV  251 (541)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhccccccc-ccccccCCccccEEeeeeEEEEehh
Confidence            999999999999999999999999999999999999 88888888877755443 3356677788999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCceeeccccccchhhHHHHHHHHHHHHhhhh
Q 009527          257 VASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWA  336 (532)
Q Consensus       257 ~as~~L~~ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w~  336 (532)
                      ++|.+|++||||++ |++|+++++|||+|..|||+|+.+++.|++.+..+.....|..|..++..+++.++|++++++|+
T Consensus       252 ~~c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~  330 (541)
T KOG2442|consen  252 TACGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWA  330 (541)
T ss_pred             hhHHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhheeEEEE
Confidence            99999999999996 59999999999999999999999999999877666667788889999999999999999999999


Q ss_pred             hhccCccchhHhhHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHhhhcccccc--ccceeeeecccCCCCCCCCCE
Q 009527          337 VRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIF--HESVMIAVARGDNSGGESIPM  414 (532)
Q Consensus       337 ~~~~~~~~W~~~nilg~~~~~~~i~~i~l~~~k~~~ilL~~lf~YDif~Vf~s~~~f--g~svMv~VA~~~~~~~~~~P~  414 (532)
                      ++||++|+|++||++|||+|++++|.+|+||+|++++||.++|+|||||||+||++|  |||||++||+|.++++|++||
T Consensus       331 v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiPM  410 (541)
T KOG2442|consen  331 VFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIPM  410 (541)
T ss_pred             EeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcce
Confidence            999999999999999999999999999999999999999999999999999999999  599999999999999999999


Q ss_pred             EEEecccc-----CCCCcccccCCCccchhhHHHHHHhhhccccccCcccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 009527          415 LLRIPRLF-----DPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQP  489 (532)
Q Consensus       415 ~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~gY~~GL~~t~~~~~~~~~~~QP  489 (532)
                      ++++||++     ++|++|||||||||++||++|+||+|||...++. ++.||.++++||++||++||+|+++| +.|||
T Consensus       411 lLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM-~~GQP  488 (541)
T KOG2442|consen  411 LLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSV-SNIYFVWSTVAYGIGLLVTFVALVLM-KGGQP  488 (541)
T ss_pred             EEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhcccc-ceeEEehhHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999     8899999999999999999999999999988875 68999999999999999999999999 66999


Q ss_pred             cccccchhhhHHHHHHHHHhchhhhcccccCCCC
Q 009527          490 ALLYLVPCTLGLTVILGLARGELKHLWDYSREPS  523 (532)
Q Consensus       490 ALlYlvP~~l~~~~~~a~~rgel~~lw~~~~~~~  523 (532)
                      ||||||||||++.+.+|++|||++++|+|.....
T Consensus       489 ALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~  522 (541)
T KOG2442|consen  489 ALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQK  522 (541)
T ss_pred             eEEEEechHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999999999987543

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00730 PSN Presenilin, signal peptide peptidase, family	Back alignment and domain information

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530	Back alignment and domain information

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []	Back alignment and domain information

>cd00538 PA PA: Protease-associated (PA) domain	Back alignment and domain information

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2	Back alignment and domain information

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)	Back alignment and domain information

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3	Back alignment and domain information

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1	Back alignment and domain information

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like	Back alignment and domain information

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1	Back alignment and domain information

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)	Back alignment and domain information

>KOG2736 consensus Presenilin [Signal transduction mechanisms]	Back alignment and domain information

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2	Back alignment and domain information

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		532
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	1e-17
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	5e-11
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	3e-06
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194	Back alignment and structure

 Score = 80.2 bits (197), Expect = 1e-17
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 21/150 (14%)

Query: 60  SFAGLTARFGLPLPSDAAKAFKLPAVLSNPLNCCS-----------TASKLSGSIALSMR 108
                   +G   P +      +P      LN C+            ++     +AL  R
Sbjct: 53  WELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQR 112

Query: 109 GD-CAFTTKAEVAQAAGAAALVVINDEEDLYKMVCSENDTALNISIPVLMIPKSRGDALN 167
           G  C F  K  +A   GA+  V+ N      +++   +     + I  +MI   +G  + 
Sbjct: 113 GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAIMIGNLKGTKIL 170

Query: 168 KSIADKQRVELLLYAPNRPDVDFAVIFLWM 197
           +SI    +V +++    +          W+
Sbjct: 171 QSIQRGIQVTMVIEVGKKHGP-------WV 193

PyMOL of 3icu

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		532
4hyg_A		301	Putative uncharacterized protein; protease, membra	99.93
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.85
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	98.95
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.8
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	98.36
3kas_A		640	Transferrin receptor protein 1; transferrin recept	98.32
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	98.2
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	98.1
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	97.94
2kr6_A		176	Presenilin-1; protease, alternative splicing, alzh	96.8
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	90.19

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A	Back alignment and structure

Probab=99.93  E-value=1.4e-26  Score=229.66  Aligned_cols=175  Identities=21%  Similarity=0.272  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhhhhhhccCccchhHhhHHHHHHHHHHHHhccc--CchHHHHHHHHHHHHHHHHhhhccccccccceeee
Q 009527          323 VVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARL--PNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIA  400 (532)
Q Consensus       323 ~~~~~~~~~~~~w~~~~~~~~~W~~~nilg~~~~~~~i~~i~l--~~~k~~~ilL~~lf~YDif~Vf~s~~~fg~svMv~  400 (532)
                      ...+.+++++..++.|.+    |+..|+.|++++..+...+.+  ..+ .+.+||+++++||++|||.|+      ||++
T Consensus       106 ~a~~~a~~~~~ll~~ype----Wyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvt  174 (301)
T 4hyg_A          106 GTLIGAVAVTALLYLYPE----WYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMIT  174 (301)
T ss_dssp             HHHHHHHHHHHHHHTCCC----SSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHH
T ss_pred             HHHHHHHHHHHHHHhccc----HHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHH
Confidence            334446666665555553    999999999999998887665  566 899999999999999999776      9999


Q ss_pred             ecccCCCCCCCCCEEEEeccccC-------------CCCcccccCCCccchhhHHHHHHhhhccccccC--cccchHHHH
Q 009527          401 VARGDNSGGESIPMLLRIPRLFD-------------PWGGYDMIGFGDILFPGLLICFAFRYDKENKKG--VVKGYFLWL  465 (532)
Q Consensus       401 VA~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~--~~~~YF~~~  465 (532)
                      +|+|.-  +.++|+++++|+-.+             .+++..++|+||+++|+++++.+.+||......  ..-+ ++.+
T Consensus       175 LAegvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA  251 (301)
T 4hyg_A          175 LAEGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGA  251 (301)
T ss_dssp             HTTTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHH
T ss_pred             HHHhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHH
Confidence            999964  468999999998422             136688999999999999999999999754411  1123 7899


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHhchhh
Q 009527          466 IIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELK  513 (532)
Q Consensus       466 ~~gY~~GL~~t~~~~~~~~~~~QPALlYlvP~~l~~~~~~a~~rgel~  513 (532)
                      ++||.+||.++...  ++++++||.|.||++.++++.++-+..+||+.
T Consensus       252 ~~Gt~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          252 MVGSLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            99999999999652  23599999999999999999999999999986

PyMOL of 4hyg

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		532
d1de4c2		193	c.8.4.1 (C:190-382) Transferrin receptor ectodomai	0.001
d3bi1a2		233	c.8.4.1 (A:118-350) Glutamate carboxypeptidase II	0.003

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Length = 193	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 97  SKLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDL 137
           + ++GSI +   G   F  K   A++  A  +++  D+   
Sbjct: 59  TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKF 99

PyMOL of d1de4c2

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Length = 233	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		532
d1de4c2		193	Transferrin receptor ectodomain, apical domain {Hu	98.5
d3bi1a2		233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.35

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.8e-08  Score=89.15  Aligned_cols=89  Identities=18%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             eeEeEEeCCCCCCCCC-----CC-CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc------------hhcc
Q 009527           80 FKLPAVLSNPLNCCST-----AS-KLSGSIALSMRGDCAFTTKAEVAQAAGAAALVVINDEEDL------------YKMV  141 (532)
Q Consensus        80 ~~~~Lv~~~p~daC~~-----~~-~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l------------~~m~  141 (532)
                      .+++++.++   -|..     +. +++|||+|++||+|.|.+|++|||++||.|+|||+|..+.            ..+.
T Consensus        39 v~g~lVy~n---~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~  115 (193)
T d1de4c2          39 VTGKLVHAN---FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG  115 (193)
T ss_dssp             EEECEEECS---TTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSS
T ss_pred             eeEEEEEcc---CCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccC
Confidence            578888764   2322     12 6899999999999999999999999999999999975320            0110


Q ss_pred             cCC----------------CCCCCcccceEEEechHhHHHHHHHhc
Q 009527          142 CSE----------------NDTALNISIPVLMIPKSRGDALNKSIA  171 (532)
Q Consensus       142 ~~~----------------~~~~~~i~IPvv~Is~~~G~~L~~~l~  171 (532)
                      .++                .+...-.+||+.-|+.++++.|++.|.
T Consensus       116 ~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         116 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            000                001112479999999999999999884

PyMOL of d1de4c2

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure