Citrus Sinensis ID: 009533

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFSL
cccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHccccHHHHHHcccHHHccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHccccccccccEEEEcccEEEEccccEEEccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEcccccccccccEEEccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHcHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccEEccccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHccHHHHHHcccEEEEcccccccccccccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHcccEcccccEEccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHEEHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccEccccccccccccccccccccccEEEEcccEEEEcccccEccc
msysdsdsssyggdyknfKQISRERLLYEMLRSAktgtskstWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIhrrrqplpsmeaiyfiqpTKENVIMFLsdmsgrsplyKKAFVFFSSPISRELVTHikkdstvlprigaLREMNLeyfaidsqgfvtdDERALEELfgdeensrrgdACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSienfpqtetcdllildrsvdqvapIIHEWTYDAICRDLLNMEgnkyvhevpsktggppekkevllEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHsardggelsTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFttnedvsrENKLRLLMILAAIypekfqgekgQNIMKLARLqsdditavnnmrllggasdikksstgafslkfdinkkkravrkdrtgeeqtwqlsrfypmievhpklvfsl
msysdsdsssyggdyknfkQISRERLLYEMLRsaktgtskstwkvLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRElvthikkdstvlpRIGALREMNLEYFAIDSQGFVTDDERALEElfgdeensrrgDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVhevpsktggppeKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFfttnedvsrenKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLggasdikksstgafslkfdinkkkravrkdrtgeeqtwqlsrfypmievhpklvfsl
MsysdsdsssyggdyKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIrelrlrelgqleqdlVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFSL
*******************QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELF********GDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVH***************LLEEHDPLWLELRHAHIA*******************************************LPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGG***********FSLKFD*****************TWQLSRFYPMIEVHPKLV***
********************ISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVW*****************TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYV******************EEHDPLWLELRHAHIADASERLHEKMTS************************LQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLG***********************************TWQLSRFYPMIEVHPKLVFSL
************GDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHE*********EKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFIS*****************STKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKK***********QTWQLSRFYPMIEVHPKLVFSL
*************DYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQ*******ELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK****************************QTWQLSRFYPMIEVHPKLVFSL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query532 2.2.26 [Sep-21-2011]
Q9C5X3 666 SNARE-interacting protein yes no 0.960 0.767 0.830 0.0
Q9SZ77 662 Protein transport Sec1b O no no 0.958 0.770 0.716 0.0
Q7XWP3 665 Probable protein transpor yes no 0.977 0.781 0.687 0.0
Q9C5P7 673 Protein transport Sec1a O no no 0.937 0.741 0.696 0.0
Q5VNU3 659 Probable protein transpor yes no 0.975 0.787 0.604 0.0
Q64324 593 Syntaxin-binding protein yes no 0.864 0.775 0.313 2e-59
Q62753 594 Syntaxin-binding protein yes no 0.864 0.774 0.317 3e-59
Q15833 593 Syntaxin-binding protein yes no 0.857 0.768 0.311 2e-58
Q28288 593 Syntaxin-binding protein yes no 0.862 0.774 0.303 2e-58
Q54QC8 598 Protein transport protein yes no 0.868 0.772 0.307 2e-57
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/513 (83%), Positives = 476/513 (92%), Gaps = 2/513 (0%)

Query: 11  YGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGV 70
           +GG+YKNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGV
Sbjct: 11  HGGEYKNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGV 70

Query: 71  SLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVT 130
           SLVEDI RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV 
Sbjct: 71  SLVEDIFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVG 130

Query: 131 HIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMAS 190
           HIKKDS+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMAS
Sbjct: 131 HIKKDSSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMAS 190

Query: 191 RIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQT 250
           RIATVFASLREFP VRYRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQT
Sbjct: 191 RIATVFASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQT 250

Query: 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEE 310
           ETC+LLILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEE
Sbjct: 251 ETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEE 310

Query: 311 HDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQ 370
           HDP+WLELRHAHIADASERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQ
Sbjct: 311 HDPIWLELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQ 369

Query: 371 YSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRE 430
           YS+QIDKLSLHVEIA K+N +IRE  LRELGQLEQDLVFGDAG+KDV+K+ +T E+ SRE
Sbjct: 370 YSEQIDKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASRE 429

Query: 431 NKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFS 490
            KLRLLMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+
Sbjct: 430 GKLRLLMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFT 489

Query: 491 LKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIE 523
           LKFD++KKKRAVRK+R  EE  WQLSRFYPMIE
Sbjct: 490 LKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIE 521
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
224071599 666 predicted protein [Populus trichocarpa] 0.966 0.771 0.848 0.0
224125086 666 predicted protein [Populus trichocarpa] 0.956 0.764 0.854 0.0
225448938 753 PREDICTED: SNARE-interacting protein KEU 0.983 0.694 0.826 0.0
357477033 666 SNARE-interacting protein KEULE [Medicag 0.962 0.768 0.818 0.0
356514152 665 PREDICTED: SNARE-interacting protein KEU 0.964 0.771 0.812 0.0
356563274 666 PREDICTED: SNARE-interacting protein KEU 0.964 0.770 0.808 0.0
18391384 666 SNARE-interacting protein KEULE [Arabido 0.960 0.767 0.830 0.0
297844098 665 hypothetical protein ARALYDRAFT_471384 [ 0.960 0.768 0.828 0.0
12659318 666 KEULE [Arabidopsis thaliana] 0.960 0.767 0.828 0.0
356563276 671 PREDICTED: SNARE-interacting protein KEU 0.964 0.764 0.801 0.0
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/515 (84%), Positives = 483/515 (93%), Gaps = 1/515 (0%)

Query: 10  SYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEG 69
           +YGGDY+NF+QISRERLL+EMLRSAKTG SKSTWKVLIMD+LTVKIMS+SCKMADITQEG
Sbjct: 11  AYGGDYRNFRQISRERLLHEMLRSAKTGNSKSTWKVLIMDRLTVKIMSYSCKMADITQEG 70

Query: 70  VSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELV 129
           VSLVEDI+RRRQPLPSM+AIYFIQPTKENVIMFLSDM+G+SPLYKKAFVFFSSPISRELV
Sbjct: 71  VSLVEDIYRRRQPLPSMDAIYFIQPTKENVIMFLSDMAGKSPLYKKAFVFFSSPISRELV 130

Query: 130 THIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMA 189
           +HIKKDS+VL RIGALREMNLEYFAIDSQGF+TD+ERALEELFGD+E+S +GDACLNVMA
Sbjct: 131 SHIKKDSSVLTRIGALREMNLEYFAIDSQGFITDNERALEELFGDDEDSHKGDACLNVMA 190

Query: 190 SRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ 249
           SRIATVFASLREFP VR+RAA+SLD  TMTT  DLIPTKLAA +W+ L +YKQ IENFPQ
Sbjct: 191 SRIATVFASLREFPFVRFRAARSLDVTTMTTSRDLIPTKLAARIWDSLTQYKQKIENFPQ 250

Query: 250 TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLE 309
           TETC+LLILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVHEVP K GGPPEKKEVLLE
Sbjct: 251 TETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKAGGPPEKKEVLLE 310

Query: 310 EHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALP 369
           EHDP+WLELRHAHIA ASERLHEKMT+F+SKNKAA+IQH +RDGGELST+DLQ+MVQALP
Sbjct: 311 EHDPVWLELRHAHIAFASERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALP 370

Query: 370 QYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSR 429
           QYS+QIDKLSLHVEIAGKIN+IIREL LRELGQLEQDLVFGDAG+KDV+KF T  ED +R
Sbjct: 371 QYSEQIDKLSLHVEIAGKINRIIRELGLRELGQLEQDLVFGDAGMKDVIKFLTMKEDTTR 430

Query: 430 ENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489
           ENKLRLLMILAA++PEK +GE+G NIMKLARL  DD+ AVNNMRLL GASD KK STGAF
Sbjct: 431 ENKLRLLMILAAVFPEKLEGERGLNIMKLARLPQDDMNAVNNMRLLAGASDTKKRSTGAF 490

Query: 490 SLKFDINKKKRAVRKDRTGEEQ-TWQLSRFYPMIE 523
           SLKFDI+KKKRA RKDRTGEE+ TWQLSRFYPMIE
Sbjct: 491 SLKFDIHKKKRAARKDRTGEEETTWQLSRFYPMIE 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|18391384|ref|NP_563905.1| SNARE-interacting protein KEULE [Arabidopsis thaliana] gi|150421587|sp|Q9C5X3.2|KEULE_ARATH RecName: Full=SNARE-interacting protein KEULE gi|110743380|dbj|BAE99577.1| hypothetical protein [Arabidopsis thaliana] gi|332190749|gb|AEE28870.1| SNARE-interacting protein KEULE [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844098|ref|XP_002889930.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] gi|297335772|gb|EFH66189.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12659318|gb|AAK01291.1|AF331066_1 KEULE [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
TAIR|locus:2034670 666 KEU "keule" [Arabidopsis thali 0.951 0.759 0.807 1.2e-221
TAIR|locus:2118126 662 SEC1B [Arabidopsis thaliana (t 0.954 0.767 0.695 2.5e-193
TAIR|locus:2025482 673 SEC1A "secretory 1A" [Arabidop 0.945 0.747 0.670 6.4e-186
UNIPROTKB|E7EQD5604 STXBP2 "Syntaxin-binding prote 0.800 0.705 0.305 1.2e-49
MGI|MGI:107370593 Stxbp2 "syntaxin binding prote 0.817 0.733 0.301 1.5e-49
UNIPROTKB|Q5RE92593 DKFZp469D0239 "Putative unchar 0.810 0.726 0.301 3.2e-49
UNIPROTKB|Q28288593 STXBP2 "Syntaxin-binding prote 0.817 0.733 0.295 4.1e-49
UNIPROTKB|Q15833593 STXBP2 "Syntaxin-binding prote 0.812 0.728 0.301 4.1e-49
RGD|619967594 Stxbp2 "syntaxin binding prote 0.817 0.732 0.301 5.2e-49
UNIPROTKB|Q62753594 Stxbp2 "Syntaxin-binding prote 0.817 0.732 0.301 5.2e-49
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2140 (758.4 bits), Expect = 1.2e-221, P = 1.2e-221
 Identities = 410/508 (80%), Positives = 458/508 (90%)

Query:    16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVED 75
             KNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGVSLVED
Sbjct:    16 KNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGVSLVED 75

Query:    76 IHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD 135
             I RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV HIKKD
Sbjct:    76 IFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKD 135

Query:   136 STVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATV 195
             S+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMASRIATV
Sbjct:   136 SSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATV 195

Query:   196 FASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDL 255
             FASLREFP VRYRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQTETC+L
Sbjct:   196 FASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCEL 255

Query:   256 LILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLW 315
             LILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEEHDP+W
Sbjct:   256 LILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIW 315

Query:   316 LELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQI 375
             LELRHAHIADASERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQYS+QI
Sbjct:   316 LELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQI 374

Query:   376 DKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRL 435
             DKLSLHVEIA K+N +I               VFGDAG+KDV+K+ +T E+ SRE KLRL
Sbjct:   375 DKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRL 434

Query:   436 LMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDI 495
             LMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+LKFD+
Sbjct:   435 LMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDL 494

Query:   496 NKKKRAVRKDRTGEEQTWQLSRFYPMIE 523
             +KKKRAVRK+R  EE  WQLSRFYPMIE
Sbjct:   495 HKKKRAVRKERQ-EEAAWQLSRFYPMIE 521
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQD5 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107370 Stxbp2 "syntaxin binding protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RE92 DKFZp469D0239 "Putative uncharacterized protein DKFZp469D0239" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q28288 STXBP2 "Syntaxin-binding protein 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15833 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619967 Stxbp2 "syntaxin binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q62753 Stxbp2 "Syntaxin-binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XWP3SEC1A_ORYSJNo assigned EC number0.68700.97740.7819yesno
Q5VNU3SEC1B_ORYSJNo assigned EC number0.60420.97550.7875yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.83040.96050.7672yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
pfam00995554 pfam00995, Sec1, Sec1 family 1e-119
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 1e-49
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  363 bits (933), Expect = e-119
 Identities = 142/485 (29%), Positives = 257/485 (52%), Gaps = 31/485 (6%)

Query: 43  WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMF 102
           WKVL++DK T KI+S    ++D+ + GV+LVE+I  +R+PLP + AIYFI+PT+ENV   
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRI 60

Query: 103 LSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVT 162
           + D+  ++P YK   +FF++ +SR L+  + + + V   +  ++E+ L++  ++S  F  
Sbjct: 61  IDDL--KNPKYKSYHIFFTNSLSRSLLERLAE-ADVAELVKQVKEIYLDFIPLESDLFSL 117

Query: 163 DDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFS 222
           +   +  +L+    +    ++ L  +A  + ++  +L E P++RY+             +
Sbjct: 118 ELPNSFRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNS---------AA 164

Query: 223 DLIPTKLAAGVWNCLMKYKQSIENFP-QTETCDLLILDRSVDQVAPIIHEWTYDAICRDL 281
           + +  KLA  +   L  +     + P       LLILDRS+D + P++H+WTY A+  DL
Sbjct: 165 ERLAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDL 224

Query: 282 LNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKN 341
           L ++ N+    + +   G   KKEV+L+E+DP W+E RH H  D +E++ +++  +  +N
Sbjct: 225 LGIKNNRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEEN 282

Query: 342 KAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELG 401
           K +  +       + S  DL++ V+ LP++  +  KLSLH+ +A ++ K I+E +L ++ 
Sbjct: 283 KNSNKK-------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVS 335

Query: 402 QLEQDLVFGDAGLKDVVKFFT--TNEDVSRENKLRLLMILAAIYPEK-FQGEKGQNIMKL 458
           +LEQDL  G    K          N  V  E+KLRLL++ +     K    E  + ++  
Sbjct: 336 ELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDGGKGKDLEDLRKLLLH 395

Query: 459 ARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRF 518
           A +  + +  V N+  LGG   + ++S   FS   D  K           +     LSR+
Sbjct: 396 AGIGPEALNLVKNLEQLGGL--LSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRY 453

Query: 519 YPMIE 523
            P+++
Sbjct: 454 KPLLK 458

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
KOG1300 593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-96  Score=753.82  Aligned_cols=481  Identities=43%  Similarity=0.690  Sum_probs=429.5

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCCH
Q 009533           17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK   96 (532)
Q Consensus        17 sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt~   96 (532)
                      +|+++++++++.++++ +.+   .+.|||||+|+.+++++|+||+|++++++||++|+.|++.|+|+|.++|||||+||.
T Consensus         2 ~l~~l~~~kil~~v~~-~~k---~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~   77 (593)
T KOG1300|consen    2 GLKELVKKKILEDVLR-VEK---KGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE   77 (593)
T ss_pred             chHHHHHHHHHHHhcc-cCC---CCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence            4899999999988887 433   347999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCCC
Q 009533           97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE  176 (532)
Q Consensus        97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~~  176 (532)
                      ++|+++++||....|+|+.+||||++.||+++++.+.. ..+.+.|++++|+|++|+|+|+++|+++.|++|..+|++. 
T Consensus        78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~-  155 (593)
T KOG1300|consen   78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD-  155 (593)
T ss_pred             hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence            99999999997667899999999999999999999985 4578899999999999999999999999999999999976 


Q ss_pred             CccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCCCCCeeEE
Q 009533          177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL  256 (532)
Q Consensus       177 ~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li  256 (532)
                      +......+++.+|.+|++||+++|++|.|||++.....+       +.+|.++|+++++.++.|+.+.+.+|..+++.||
T Consensus       156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl  228 (593)
T KOG1300|consen  156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL  228 (593)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence            566677899999999999999999999999999865443       3789999999999999998766777887899999


Q ss_pred             EecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHHHHHH
Q 009533          257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTS  336 (532)
Q Consensus       257 IlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~~~~~  336 (532)
                      |+||++|++||+||+||||||+||+++|+||+|.|+.+..+|++  +|+++|+++|++|.++||+||++|++.|++++++
T Consensus       229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIadvse~l~~~~k~  306 (593)
T KOG1300|consen  229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN  306 (593)
T ss_pred             EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999886555533  7889999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCC-ChH
Q 009533          337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA-GLK  415 (532)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~-~~k  415 (532)
                      |.++++.+..     +++..|++||+++|++||+|+++..++++|++||++||+.++. ++.+++.+||+|++|.+ ..+
T Consensus       307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~  380 (593)
T KOG1300|consen  307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE  380 (593)
T ss_pred             HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence            9998875432     3446899999999999999999999999999999999999987 99999999999999954 322


Q ss_pred             -------HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCCCCC
Q 009533          416 -------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGA  488 (532)
Q Consensus       416 -------~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~~~~~  488 (532)
                             .+++.+. ...++..||+|++++|.+. ++|+...++.+|++|.|++.+++.++.|+..+|....++..    
T Consensus       381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~~~----  454 (593)
T KOG1300|consen  381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKDSF----  454 (593)
T ss_pred             cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccCcc----
Confidence                   3444444 4678999999999999997 58999999999999999999999999999999999876532    


Q ss_pred             ccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533          489 FSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS  531 (532)
Q Consensus       489 ~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~  531 (532)
                       +     .|.+++.+++|. .+.+|++|||+|.|++|+|.+|.
T Consensus       455 -~-----~k~~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~  490 (593)
T KOG1300|consen  455 -L-----LKFDPPERKERV-EEQTYQLSRWVPVIKNILEKLIE  490 (593)
T ss_pred             -c-----ccCCCCcccccc-ccceeeeeeeehHHHHHHHHHHh
Confidence             1     233445578885 89999999999999999999873

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 2e-54
3c98_A 606 Revised Structure Of The Munc18a-Syntaxin1 Complex 5e-54
3puj_A 594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 6e-54
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 1e-49
2xhe_A 650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 6e-47
2pjx_A 592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 5e-46
1mqs_A 671 Crystal Structure Of Sly1p In Complex With An N-Ter 3e-23
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 8e-09
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/516 (29%), Positives = 266/516 (51%), Gaps = 43/516 (8%)
Query: 18  FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVEDI+
Sbjct: 3   LKTAVHEKIMNDVVLAVK---KNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 59
Query: 78  RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 60  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 118
Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
           T    I  L+E+N+ +   +SQ F  D      +++ +   ++ G       A +IAT+ 
Sbjct: 119 TTARFIKTLKEINIAFLPYESQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLC 177
Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256
           A+L E+P VRYR+    D     +F+ L+  KL A   +       ++   PQ +   LL
Sbjct: 178 ATLGEYPSVRYRS----DFDENASFAQLVQQKLDAYRAD-----DPTMGEGPQKDRSQLL 228
Query: 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEHDPL 314
           ILDR  D ++P++HE T+ A+  DLL +E + Y +     TGG   PE KEVLL+E D L
Sbjct: 229 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKY---VNTGGNEVPE-KEVLLDEKDDL 284
Query: 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQ 374
           W+E+RH HIA  S+ + +K+  F  + +       A        KDL +M++ +PQY  +
Sbjct: 285 WVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKE 338
Query: 375 IDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAG-------LKDVVKFFTTNEDV 427
           + K S H+ +A    K                 +  DA        ++++V     ++ +
Sbjct: 339 LSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL-LDQKI 397
Query: 428 SRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG 487
           S  +K+R+++ L  I+      E    +++ A + +++   +N+M+ L G   I+     
Sbjct: 398 SAYDKIRIIL-LYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNL-GVPIIQDGGRR 455
Query: 488 AFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIE 523
                +  +      RK+R   + T+Q+SR+ P ++
Sbjct: 456 KIPQPYHTHN-----RKERQA-DHTYQMSRWTPYMK 485
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
2xhe_A 650 UNC18; exocytosis, exocytosis complex, snare, neur 2e-96
1dn1_A 594 NSEC1, syntaxin binding protein 1; protein-protein 6e-91
1mqs_A 671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 1e-88
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 7e-88
3puk_A 592 Syntaxin-binding protein 3; membrane trafficking, 3e-87
1y9j_A159 SEC1 family domain containing protein 1; membrane 4e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  305 bits (782), Expect = 2e-96
 Identities = 128/516 (24%), Positives = 252/516 (48%), Gaps = 42/516 (8%)

Query: 15  YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVE 74
           + + K   +  L    LRS   G     WKVL++DK  ++++S   +M++I   GV++VE
Sbjct: 1   HMSLKSAVKTVLT-NSLRSVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVE 56

Query: 75  DIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK 134
           D+ ++R+ LP    +YFI+PT+EN+   + D + R+P Y+ A +FF SP+   L+  +  
Sbjct: 57  DVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS 116

Query: 135 DSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIAT 194
            +  +  +  L+E+N  +   + + F  ++   L + +G   +S      ++ +  R++T
Sbjct: 117 -AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSS----YNIDHLVRRLST 171

Query: 195 VFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCD 254
           +  ++   P+VRY +  +  T  M   +  +  ++   V   L+  ++            
Sbjct: 172 LCTTMNVAPIVRYSSTSTPGTERM---AMQLQKEIDMSVSQGLINAREG------KLKSQ 222

Query: 255 LLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPL 314
            LILDR+VD  +P++HE TY A   DLLN+E + Y +      GG  ++++V+L E D +
Sbjct: 223 FLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDI 281

Query: 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQ 374
           WL++RH HI++   ++      F    +  Q    ++  GE     L++M++ LPQ+ +Q
Sbjct: 282 WLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQ-GEGGAGALKQMLKDLPQHREQ 340

Query: 375 IDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFT-------TNEDV 427
           + K SLH++++  IN       +    + EQ++V  +    + V+ F         +  V
Sbjct: 341 MQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRV 399

Query: 428 SRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG 487
           S E+KLR LM+   +        +  N++  A + +   +A+ N+ +LG      +    
Sbjct: 400 STEDKLRCLMLC-VLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR---- 454

Query: 488 AFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIE 523
                    + ++     R   +  + LSR+ P+++
Sbjct: 455 ---------RGRKPKTMKRIERDMPYVLSRWTPIVK 481
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
1dn1_A 594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A 592 Syntaxin-binding protein 3; membrane trafficking, 100.0
3c98_A 606 Syntaxin-binding protein 1; protein complex, alter 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
2xhe_A 650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1mqs_A 671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.96
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=1.2e-93  Score=782.54  Aligned_cols=476  Identities=31%  Similarity=0.564  Sum_probs=413.5

Q ss_pred             hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCC
Q 009533           16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT   95 (532)
Q Consensus        16 ~sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt   95 (532)
                      .+||+++|++|++++|+++++   .++|||||+|+.++++||++|++++|+++||++|+.|++.|+|+|+++|||||+||
T Consensus         4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt   80 (594)
T 1dn1_A            4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS   80 (594)
T ss_dssp             CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred             hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence            469999999999889999864   34799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCC
Q 009533           96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD  174 (532)
Q Consensus        96 ~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~  174 (532)
                      .+||++|++||+. ..++|+.|||||++.+|+.+++.|++ .++.+.|+++.|+++||+|+|+|+|||++|++|..+|++
T Consensus        81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~  159 (594)
T 1dn1_A           81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP  159 (594)
T ss_dssp             HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred             HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence            9999999999974 23689999999999999999999997 478999999999999999999999999999999999996


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCC---CCC
Q 009533          175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE  251 (532)
Q Consensus       175 ~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~---~~~  251 (532)
                      +.+ ....+.++.+|++|+++|.++|++|.|||+|++            ..|+++|+.|++.|+++..+++.++   ...
T Consensus       160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~  226 (594)
T 1dn1_A          160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA  226 (594)
T ss_dssp             GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred             ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence            432 234678999999999999999999999999874            2468899999999998876555442   234


Q ss_pred             CeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHH
Q 009533          252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH  331 (532)
Q Consensus       252 ~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~  331 (532)
                      +++|||+||++|++|||+||||||||+||+|||++|+|+++.+.  .+..++|++.|+++|++|.++||+||++|++.|.
T Consensus       227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~  304 (594)
T 1dn1_A          227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT  304 (594)
T ss_dssp             GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred             CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence            78999999999999999999999999999999999999998632  2234568899999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCC
Q 009533          332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD  411 (532)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~  411 (532)
                      +++++|+++++..       .++..|++||++||++||+|+++++.+++|++||++|++.+++ .|.+++++||+|++|.
T Consensus       305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~  376 (594)
T 1dn1_A          305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT  376 (594)
T ss_dssp             HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred             HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence            9999999875421       1245688999999999999999999999999999999999987 8999999999999986


Q ss_pred             CC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCC
Q 009533          412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK  483 (532)
Q Consensus       412 ~~--------~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~  483 (532)
                      +.        .+.+.++|. +++++..|||||+|||++++ +|++++++.+|++++|++.+++.++.||+++|+...++.
T Consensus       377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~  454 (594)
T 1dn1_A          377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS  454 (594)
T ss_dssp             CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred             CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence            42        134566776 56789999999999999987 699999999999999999999999999999998876553


Q ss_pred             CCCCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533          484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS  531 (532)
Q Consensus       484 ~~~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~  531 (532)
                      ..          .|.+++.++++ +.+..|++|||+|++++++|.++.
T Consensus       455 ~~----------~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~  491 (594)
T 1dn1_A          455 TL----------RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIE  491 (594)
T ss_dssp             GG----------GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHT
T ss_pred             cc----------ccccccccccC-CCCccceeeccchHHHHHHHHHHh
Confidence            20          12233455554 578999999999999999999874
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 532
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-112
d1mqsa_ 653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-111
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-110
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  342 bits (877), Expect = e-112
 Identities = 147/514 (28%), Positives = 266/514 (51%), Gaps = 39/514 (7%)

Query: 18  FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVEDI+
Sbjct: 2   LKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 58

Query: 78  RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 59  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 117

Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
           T    I  L+E+N+ +   +SQ F  D     +  + +   ++ G       A +IAT+ 
Sbjct: 118 TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYY-NPSRAQGGIPNKERCAEQIATLC 176

Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256
           A+L E+P VRYR+    D     +F+ L+  KL     +       ++   PQ +   LL
Sbjct: 177 ATLGEYPSVRYRS----DFDENASFAQLVQQKL-----DAYRADDPTMGEGPQKDRSQLL 227

Query: 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWL 316
           ILDR  D ++P++HE T+ A+  DLL +E + Y  +  +  G    +KEVLL+E D LW+
Sbjct: 228 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVY--KYVNTGGNEVPEKEVLLDEKDDLWV 285

Query: 317 ELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQID 376
           E+RH HIA  S+ + +K+  F  + +            +   KDL +M++ +PQY  ++ 
Sbjct: 286 EMRHQHIAVVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELS 339

Query: 377 KLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTT-------NEDVSR 429
           K S H+ +A    K  ++  + +L ++EQDL  G     + ++           ++ +S 
Sbjct: 340 KYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISA 398

Query: 430 ENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489
            +K+R++++   I+      E    +++ A + +++   +N+M+ LG             
Sbjct: 399 YDKIRIILLY-IIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIP 457

Query: 490 SLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIE 523
                 N+K+R         + T+Q+SR+ P ++
Sbjct: 458 QPYHTHNRKER-------QADHTYQMSRWTPYMK 484
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_ 653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-84  Score=712.49  Aligned_cols=475  Identities=31%  Similarity=0.559  Sum_probs=410.2

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCCH
Q 009533           17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK   96 (532)
Q Consensus        17 sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt~   96 (532)
                      +||++++++++++++++|++.   +.|||||+|+.++++||++|++++|+++||++++.|++.|+|+|+.+|||||+||.
T Consensus         2 ~~~~~~~~~~l~~~~~~v~~~---~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~   78 (589)
T d1dn1a_           2 GLKAVVGEKIMHDVIKKVKKK---GEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSE   78 (589)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCT---TCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCH
T ss_pred             ChHHHHHHHHHHHHHhccCCC---CccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCH
Confidence            499999999998899999752   46999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCC
Q 009533           97 ENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE  175 (532)
Q Consensus        97 ~~i~~i~~d~~~~-~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~  175 (532)
                      +||++|++||+.. .++|+.|||+|++++|+.+++.|+++ ++++.|.++.|+++||+|+|+|+|||++|++|..+|.++
T Consensus        79 ~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~-~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~  157 (589)
T d1dn1a_          79 KSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPH  157 (589)
T ss_dssp             HHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHS-GGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGG
T ss_pred             HHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhc-CccccCCeEEEEecceeeCCCCEEEecCCchHHHhcCCc
Confidence            9999999999742 35799999999999999999999975 688999999999999999999999999999999999865


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCC---CCC
Q 009533          176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET  252 (532)
Q Consensus       176 ~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~~---~~~  252 (532)
                      +. ....+.++.+|++|+++|.++|.+|.|||+|++            ..|+++|+.+++.++.+.++++.++.   .++
T Consensus       158 ~~-~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~  224 (589)
T d1dn1a_         158 KA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKAR  224 (589)
T ss_dssp             GT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGG
T ss_pred             cc-chhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCc------------hHHHHHHHHHHHHHHHHHhcCcccCCCcccCC
Confidence            32 234678999999999999999999999999884            35788999999999988876655432   346


Q ss_pred             eeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHH
Q 009533          253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE  332 (532)
Q Consensus       253 ~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~  332 (532)
                      ++|||+||++|++|||+||||||||+||+|||++|.|+++.+..  +..+.+++.++++|++|.++||+||++|++.|.+
T Consensus       225 ~~LiIlDR~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~--~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~  302 (589)
T d1dn1a_         225 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTR  302 (589)
T ss_dssp             CEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS--SSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHH
T ss_pred             ceEEEeccCccccccccccccHHHHHHHHhcccCCeEEecCCCC--CcccceEeecCCCcHHHHHhhcccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999987422  2344678899999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCC
Q 009533          333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA  412 (532)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~  412 (532)
                      ++++++++++.       ...+..+++||+++|+++|+++++++.++.|++||++|++.++ ++|.+++++||++++|.+
T Consensus       303 ~~~~~~~~~~~-------~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~  374 (589)
T d1dn1a_         303 SLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTD  374 (589)
T ss_dssp             HHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBC
T ss_pred             HHHHHHHHhhh-------hccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            99999876542       1224567889999999999999999999999999999999995 789999999999999864


Q ss_pred             C--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 009533          413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS  484 (532)
Q Consensus       413 ~--------~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~  484 (532)
                      .        ...+++++. +...+.+|+|||+|||++++ +|++++++.++++.+|++.+.+.++.||+.+|+...+...
T Consensus       375 ~~~~~~~~~~~~i~~~l~-~~~~~~~d~LRL~~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~  452 (589)
T d1dn1a_         375 AEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST  452 (589)
T ss_dssp             SSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG
T ss_pred             cchhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChHHHHHHHHHHHhCCccccCch
Confidence            2        135677776 56789999999999999987 7999999999999999999999999999999988866532


Q ss_pred             CCCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533          485 STGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS  531 (532)
Q Consensus       485 ~~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~  531 (532)
                      .          .+......++ .+.+.+|.+|||+|+++++++.+++
T Consensus       453 ~----------~~~~~~~~~~-~~~~~~~~~s~y~Pl~~~l~~~~~~  488 (589)
T d1dn1a_         453 L----------RRRSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIE  488 (589)
T ss_dssp             G----------GCCCCCCCCC-CCCSCCCTTCCCCCHHHHHHHHHHT
T ss_pred             h----------hccccccccc-CCcccccccccchHHHHHHHHHHHh
Confidence            1          1111222222 3678999999999999999998864
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure