Citrus Sinensis ID: 009536
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WVE9 | 524 | Probable plastidic glucos | yes | no | 0.877 | 0.891 | 0.785 | 0.0 | |
| Q9FYG3 | 493 | Probable plastidic glucos | no | no | 0.906 | 0.977 | 0.445 | 1e-108 | |
| Q56ZZ7 | 546 | Plastidic glucose transpo | no | no | 0.828 | 0.807 | 0.436 | 1e-107 | |
| Q2V4B9 | 495 | Probable plastidic glucos | no | no | 0.879 | 0.945 | 0.443 | 1e-103 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.806 | 0.938 | 0.337 | 8e-56 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.787 | 0.908 | 0.323 | 6e-54 | |
| P15729 | 468 | Glucose transport protein | N/A | no | 0.791 | 0.899 | 0.301 | 6e-49 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.832 | 0.936 | 0.299 | 8e-49 | |
| P54723 | 482 | Putative metabolite trans | no | no | 0.808 | 0.892 | 0.299 | 4e-47 | |
| Q07647 | 493 | Solute carrier family 2, | yes | no | 0.830 | 0.896 | 0.290 | 5e-47 |
| >sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/467 (78%), Positives = 412/467 (88%)
Query: 60 QKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF 119
+K D ++ +S + DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGF
Sbjct: 54 KKPDDDHEISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGF 113
Query: 120 EGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE 179
EGN ILEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE
Sbjct: 114 EGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDE 173
Query: 180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239
+L GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDD
Sbjct: 174 ILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDD 233
Query: 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299
PHWWRTMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+
Sbjct: 234 PHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVED 293
Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT 359
FQ V+K GS+L+S+W ELL++PHSRVAFIGG+LF+LQQFAGINGVLYFSSLTFQ+VGIT
Sbjct: 294 FQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGIT 353
Query: 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419
GA ASL VGVTNFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A PLDED S
Sbjct: 354 SGAQASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLS 413
Query: 420 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 479
+LSILGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFLVGLFFLD
Sbjct: 414 QSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLD 473
Query: 480 LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 526
LVE +GV VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+
Sbjct: 474 LVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNSR 520
|
May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/489 (44%), Positives = 312/489 (63%), Gaps = 7/489 (1%)
Query: 40 STKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFL 98
S+ +K +++ P + +D LL D E E + W + PHVL+A++S+FL
Sbjct: 9 SSMYKRTSSRDYSPMI----DVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFL 64
Query: 99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158
FGYH+GV+N P+ SI+ +LGF G+ + EGLVVS+ + GAF+GS+ SG +AD G RR FQ
Sbjct: 65 FGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQ 124
Query: 159 IDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC 218
I +P+ILGA +S ++SL ML GRFLVG G+G+ + +Y++EV+P RG+ G+
Sbjct: 125 ICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFI 184
Query: 219 QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN 278
Q+ TCLG++ +LF+GIP + WWR +++++P +LALGM ESP+WL K G +
Sbjct: 185 QIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIA 244
Query: 279 DAKAVIANLWGESEINKAIEE-FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQ 337
+A+A L G S + A+ E ++L + K SELL HSRV FIG LF LQ
Sbjct: 245 EAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTLFALQ 304
Query: 338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYL 397
Q +GIN V YFSS F+ G+ L ++ VGV+N G++ A LMDK GR+ LL+ S++
Sbjct: 305 QLSGINAVFYFSSTVFKSAGVPSD-LGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLWSFI 363
Query: 398 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGK 457
GMA +M L VGATS L + LS+ GTL ++ TFA+GAGPV GL++PE+ +R R K
Sbjct: 364 GMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRIRAK 423
Query: 458 IMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 517
M F SVHWV NF VGL FL L+E G +Y+ F L++ +F ++ETKG++L+
Sbjct: 424 AMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQ 483
Query: 518 EIEMSLNAN 526
EIE+SL A
Sbjct: 484 EIEISLLAK 492
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/442 (43%), Positives = 296/442 (66%), Gaps = 1/442 (0%)
Query: 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
P V +A + LFGYH+GV+NG + +AK+LG N +L+G +VS +AGA VGS + G
Sbjct: 106 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 165
Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205
+LADK G RTFQ+D IPL +GA + A A S+ M+ GR L G+GIG+++ +VP+YISE+
Sbjct: 166 ALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEI 225
Query: 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
+PT+ RG+LG++ Q+ C+GI+ +L G+P +P WWRTM +A +P +LA+GM F+
Sbjct: 226 SPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSP 285
Query: 266 ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325
ESPRWL + G +++A+ I L+G+ + + + + + S+ ++ W +L + +
Sbjct: 286 ESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWK 344
Query: 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDK 385
V +G ALFL QQ AGIN V+Y+S+ F+ GI AS LVG +N G AS LMDK
Sbjct: 345 VVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDK 404
Query: 386 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV 445
GR+ LL+ S+ GMA+SMLL+ + + +S L+++GT+ Y+ +F++GAGPV L+
Sbjct: 405 MGRKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALL 464
Query: 446 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 505
+PE+ ++R R K + S +HW+ NF++GL+FL +V FG++ VY GF GV +L+ L+
Sbjct: 465 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIA 524
Query: 506 YFIVETKGRSLEEIEMSLNANS 527
+VETKGRSLEEIE++L + +
Sbjct: 525 GNVVETKGRSLEEIELALTSGA 546
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/485 (44%), Positives = 302/485 (62%), Gaps = 17/485 (3%)
Query: 56 RSRKQKQDGENLLSRDQKAEE--------GFDLG---WLPAFPHVLIASMSNFLFGYHIG 104
R ++ + LS KAE G D G W + PHVL+AS+++ LFGYH+G
Sbjct: 14 RHIDKRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLG 73
Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
V+N + SI+ +LGF GN I EGLVVS + GAF+GS+ SG +AD +G RR FQ+ +P+
Sbjct: 74 VVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPM 133
Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224
I+GA +SA SL ML GRFLVG+G+G+ + +Y++EV+P RG+ G+ Q+ TC+
Sbjct: 134 IVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCI 193
Query: 225 GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
G++ SLF GIPA+D+ WWR +I+++P +LA+ M+ VESP+WL K G +A+AV
Sbjct: 194 GLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVF 253
Query: 285 ANLWGESEINKAIEEFQLVIKKDGSDLDS-QWSELLEEPHSRVAFIGGALFLLQQFAGIN 343
L G S + A+ E LV G D DS + SELL RV FIG LF LQQ +GIN
Sbjct: 254 EKLLGGSYVKAAMAE--LVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGIN 311
Query: 344 GVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM 403
V YFSS F+ G+ A A++ VGV N G+ A LMDK GR+ LLIGS+ GMA+S+
Sbjct: 312 AVFYFSSTVFKKAGVPS-ASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSL 370
Query: 404 -LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS 462
L + TSLP + LS+ G L ++ +FA GAGPV L++ E+ R R +
Sbjct: 371 GLQAIAYTSLP-SPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVC 429
Query: 463 FSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMS 522
+VHWV NF VGL FL ++E G + A FG +++ +F +VETKG+SL+EIE+S
Sbjct: 430 LAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEIS 489
Query: 523 LNANS 527
L +++
Sbjct: 490 LLSST 494
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 239/442 (54%), Gaps = 13/442 (2%)
Query: 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
++ L+GY GV++G I+ + KELG N EGLVVS + GA +GS ++G L D+ G
Sbjct: 14 ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAILGSGAAGKLTDRFG 71
Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
++ + +G + A A + M+ R ++GL +G +T +VP+Y+SE+AP RG
Sbjct: 72 RKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRG 131
Query: 213 SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLC 272
+L +L Q+ +GI+ S + D WR ML +A++P +L +G+ F ESPRWL
Sbjct: 132 ALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILFMPESPRWLF 190
Query: 273 KGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG- 331
G + AK ++ L G +I++ I + + K+D L L +P R A I G
Sbjct: 191 TNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE-----LFDPWVRPALIAGL 245
Query: 332 ALFLLQQFAGINGVLYFSSLTFQDVGITDGA--LASLLVGVTNFAGALCASYLMDKEGRQ 389
L LQQF G N ++Y++ TF +VG + A L ++ +G N L A ++DK GR+
Sbjct: 246 GLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRK 305
Query: 390 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTL-FYIFTFAIGAGPVTGLVIPE 448
LL+ GM IS L+V+ +L D + + + + L +I FA+ GPV +++PE
Sbjct: 306 PLLLFGNAGMVIS-LIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPE 364
Query: 449 LSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 508
L RG G S + V +V L + L+E G++ ++ + + +++ LF + +
Sbjct: 365 LFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKV 424
Query: 509 VETKGRSLEEIEMSLNANSTPG 530
ETKGRSLEEIE L + G
Sbjct: 425 TETKGRSLEEIEQDLRDKNGQG 446
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 142/439 (32%), Positives = 239/439 (54%), Gaps = 20/439 (4%)
Query: 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
++ L+GY GV++G ++ I ++ + EGLVVS+ + GA GS SG+ +D+ G
Sbjct: 15 ALGGLLYGYDTGVISGALLFINNDIPL--TTLTEGLVVSMLLLGAIFGSALSGTCSDRWG 72
Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
R+ + +I I+GA+ A + ++ ++ R ++GL +G +T LVP+Y+SE+APTK RG
Sbjct: 73 RRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132
Query: 213 SLGTLCQVGTCLGIITSL---FLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPR 269
+LGT+ + GI+ + +L P E WR M+ +A++P +L +G+ F ESPR
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAVLLLIGIAFMPESPR 188
Query: 270 WLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI 329
WL K G +A+ ++ +I + E + + + ++ L + + I
Sbjct: 189 WLVKRGSEEEARRIMNITHDPKDIEMELAEMK---QGEAEKKETTLGVLKAKWIRPMLLI 245
Query: 330 GGALFLLQQFAGINGVLYFSSLTFQDVGI--TDGALASLLVGVTNFAGALCASYLMDKEG 387
G L + QQ GIN V+Y++ F G+ + AL ++ +G+ N + A L+D+ G
Sbjct: 246 GVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVG 305
Query: 388 RQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLF---YIFTFAIGAGPVTGL 444
R+KLLI +G+ +S+ + G L S + + + +F YI + GPV +
Sbjct: 306 RKKLLIWGSVGITLSLAALSGVL---LTLGLSASTAWMTVVFLGVYIVFYQATWGPVVWV 362
Query: 445 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 504
++PEL ++ RG GF+ V N +V L F ++ G+A V+ F + LLS FA
Sbjct: 363 LMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFA 422
Query: 505 YYFIVETKGRSLEEIEMSL 523
+Y + ETKG+SLEEIE SL
Sbjct: 423 FYMVPETKGKSLEEIEASL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P15729|GLCP_SYNY3 Glucose transport protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gtr PE=3 SV=2 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 238/454 (52%), Gaps = 33/454 (7%)
Query: 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK 150
+A++ FLFG+ V+NG + ++ K F+ + +L GL VS+ + G+ +G+ +G +AD+
Sbjct: 23 VAALGGFLFGFDTAVINGAVAALQKH--FQTDSLLTGLSVSLALLGSALGAFGAGPIADR 80
Query: 151 LGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY 210
G +T + + L +I S ++ + ++ R L G+G+G +V+ P YI+EV+P
Sbjct: 81 HGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHL 140
Query: 211 RGSLGTLCQVGTCLGIITSL----FLGIPAEDDPH--W------WRTMLYIASLPGFILA 258
RG LG+L Q+ GI +L F+ + A W WR M + +P +
Sbjct: 141 RGRLGSLQQLAIVSGIFIALLSNWFIALMAGGSAQNPWLFGAAAWRWMFWTELIPALLYG 200
Query: 259 LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDG----SDLDSQ 314
+ ESPR+L G A A++ + G ++ IEE Q + D SDL S+
Sbjct: 201 VCAFLIPESPRYLVAQGQGEKAAAILWKVEG-GDVPSRIEEIQATVSLDHKPRFSDLLSR 259
Query: 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTN 372
LL + +IG L LQQF GIN + Y+SS+ ++ VG T+ L +++ G N
Sbjct: 260 RGGLLP-----IVWIGMGLSALQQFVGINVIFYYSSVLWRSVGFTEEKSLLITVITGFIN 314
Query: 373 FAGALCASYLMDKEGRQKLLIGSYLGMAISM--LLVV--GATSL---PLDEDFSHNLSIL 425
L A +DK GR+ LL+ +GM I++ L VV GAT + P + ++++
Sbjct: 315 ILTTLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALV 374
Query: 426 GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 485
Y+F+F GP+ +++ E+ +N+ R + + V W+ NF++ F L++T G
Sbjct: 375 TANLYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVG 434
Query: 486 VAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 519
+ P Y + + +S F ++F+ ETKG++LE++
Sbjct: 435 LGPAYGLYATSAAISIFFIWFFVKETKGKTLEQM 468
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 223/451 (49%), Gaps = 8/451 (1%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+L+++ LFGY GV+NG + + + N EGLV S + GA +G++ G ++
Sbjct: 15 ILVSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMS 74
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
D G R+ + + I A ++ M+ RF++G+ +G +V VP Y++E++P
Sbjct: 75 DFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPV 134
Query: 209 KYRGSLGTLCQV----GTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264
+ RG + T ++ G L + + LG D+ H WR ML IASLP L GM
Sbjct: 135 ESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRM 194
Query: 265 VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324
ESPRWL G DA V+ + E ++E + KK+ + + +L
Sbjct: 195 PESPRWLVSKGRKEDALRVLKKIRDEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVR 254
Query: 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGAL-ASLLVGVTNFAGALCASYL 382
R+ FIG + ++QQ G+N ++Y+ + ++ G T+ AL ++ GV + +L
Sbjct: 255 RIVFIGLGIAIVQQITGVNSIMYYGTEILRNSGFQTEAALIGNIANGVISVLATFVGIWL 314
Query: 383 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPV 441
+ + GR+ +L+ +G ++LL +G SL L+ + +L F GA PV
Sbjct: 315 LGRVGRRPMLMTGLIGTTTALLL-IGIFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPV 373
Query: 442 TGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 501
T L++ E+ R RG MG + W+ NF V F L+ G++ + F G+ + S
Sbjct: 374 TWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSV 433
Query: 502 LFAYYFIVETKGRSLEEIEMSLNANSTPGNK 532
LF F+ ETKG SLE++E + A G K
Sbjct: 434 LFVKRFLPETKGLSLEQLEENFRAYDHSGAK 464
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P54723|YFIG_BACSU Putative metabolite transport protein YfiG OS=Bacillus subtilis (strain 168) GN=yfiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 228/444 (51%), Gaps = 14/444 (3%)
Query: 90 LIASMSNFLFGYHIGVMNG--PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
L+++ LFGY GV+NG P ++ A +L P+ EGLV S + GA G++ G L
Sbjct: 26 LVSTFGGLLFGYDTGVINGALPFMATAGQLNL--TPVTEGLVASSLLLGAAFGAMFGGRL 83
Query: 148 ADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207
+D+ G R+T + I + + + M+ RFL+GL +G +V VP +++E++P
Sbjct: 84 SDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISP 143
Query: 208 TKYRGSLGT----LCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
+ RG + T + +G L + +G + + WR ML IA+LP +L GM
Sbjct: 144 AERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLI 203
Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323
ESPRWL G + DA V+ + +S+ + I+E + I +G+ + + + E
Sbjct: 204 VPESPRWLAAKGRMGDALRVLRQIREDSQAQQEIKEIKHAI--EGTAKKAGFHDFQEPWI 261
Query: 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGAL-ASLLVGVTNFAGALCASY 381
R+ FIG + ++QQ G+N ++Y+ + ++ G T+ AL ++ GV + + +
Sbjct: 262 RRILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQTEAALIGNIANGVISVIAVIFGIW 321
Query: 382 LMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GP 440
L+ K R+ +LI +G ++ LL++G S+ L+ + +L F A
Sbjct: 322 LLGKVRRRPMLIIGQIG-TMTALLLIGILSIVLEGTPALPYVVLSLTILFLAFQQTAIST 380
Query: 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS 500
VT L++ E+ RG MG S W NFL+G F L+ G++ + F +++L+
Sbjct: 381 VTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATFFIFVAMNILA 440
Query: 501 ALFAYYFIVETKGRSLEEIEMSLN 524
LF ++ ETKGRSLE++E S
Sbjct: 441 ILFVKKYVPETKGRSLEQLEHSFR 464
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q07647|GTR3_RAT Solute carrier family 2, facilitated glucose transporter member 3 OS=Rattus norvegicus GN=Slc2a3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 224/461 (48%), Gaps = 19/461 (4%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILE------------GLVVSIFIAG 136
V +A++ +F FGY+ GV+N P I L + LE L V+IF G
Sbjct: 14 VTVATIGSFQFGYNTGVINAPETIIKDFLNYTLEERLEDLPREGLLTTLWSLCVAIFSVG 73
Query: 137 AFVGSISSGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGV 193
+GS S G ++ G R + + + ILG + + A S++ ++ GR ++G+ G+
Sbjct: 74 GMIGSFSVGLFVNRFGRRNSMLLVNLIAILGGCLMGFAKIAESVEMLILGRLIIGIFCGL 133
Query: 194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP-AEDDPHWWRTMLYIASL 252
T VP+YI EV+PT RG+ GTL Q+G +GI+ + G+ W +L + +
Sbjct: 134 CTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGILVAQVFGLDFILGSEELWPGLLGLTII 193
Query: 253 PGFILALGMQFTVESPRWLCKGGMLND-AKAVIANLWGESEINKAIEEFQLVIKKDGSDL 311
P + + + F ESPR+L D A ++ LWG ++ + I+E + + +
Sbjct: 194 PAILQSAALPFCPESPRFLLINRKEEDQATEILQRLWGTPDVIQEIQEMKDESIRMSQEK 253
Query: 312 DSQWSELLEEP-HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGV 370
EL + P + + I L L QQF+GIN V Y+S+ FQD G+ + A++ GV
Sbjct: 254 QVTVLELFKSPSYFQPLLISVVLQLSQQFSGINAVFYYSTGIFQDAGVQEPIYATIGAGV 313
Query: 371 TNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFY 430
N + + +L+++ GR+ L + GMA+ + + + L + + + I+ L Y
Sbjct: 314 VNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMTISLLLKDEYEAMSFVCIVAILVY 373
Query: 431 IFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVY 490
+ F IG GP+ ++ EL S R M + +W NFLVG+FF G A V+
Sbjct: 374 VAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGMFFPSAAAYLG-AYVF 432
Query: 491 AGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGN 531
F + +F + + ETKGR+ E+I + + G
Sbjct: 433 IIFAAFLVFFLIFTSFKVPETKGRTFEDITRAFEGQAHSGK 473
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 297739205 | 537 | unnamed protein product [Vitis vinifera] | 0.984 | 0.975 | 0.772 | 0.0 | |
| 225447125 | 546 | PREDICTED: probable plastidic glucose tr | 0.988 | 0.963 | 0.762 | 0.0 | |
| 224136954 | 518 | predicted protein [Populus trichocarpa] | 0.969 | 0.996 | 0.745 | 0.0 | |
| 297848760 | 521 | hypothetical protein ARALYDRAFT_470494 [ | 0.953 | 0.973 | 0.753 | 0.0 | |
| 449463102 | 540 | PREDICTED: probable plastidic glucose tr | 0.992 | 0.977 | 0.713 | 0.0 | |
| 449505434 | 540 | PREDICTED: probable plastidic glucose tr | 0.992 | 0.977 | 0.711 | 0.0 | |
| 310877902 | 439 | putative monosaccharide transporter [Vit | 0.813 | 0.986 | 0.845 | 0.0 | |
| 357462225 | 556 | hypothetical protein MTR_3g080240 [Medic | 0.951 | 0.910 | 0.711 | 0.0 | |
| 42561706 | 524 | putative plastidic glucose transporter 1 | 0.877 | 0.891 | 0.785 | 0.0 | |
| 356547853 | 515 | PREDICTED: probable plastidic glucose tr | 0.945 | 0.976 | 0.721 | 0.0 |
| >gi|297739205|emb|CBI28856.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/533 (77%), Positives = 456/533 (85%), Gaps = 9/533 (1%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
M AT++H P+ VP S P +K K RF F RS K +V AAK+QLP
Sbjct: 1 MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60
Query: 54 ELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSI 113
EL + QK + + + ++ +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+
Sbjct: 61 ELHA--QKPGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSV 118
Query: 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ 173
A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLILGA+ISAQ
Sbjct: 119 ARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLILGALISAQ 178
Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
AHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFLG
Sbjct: 179 AHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIVSLFLG 238
Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293
IP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +LWG SE+
Sbjct: 239 IPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRSLWGVSEV 298
Query: 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTF 353
++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIGG LF LQQFAGINGVLYFSSLTF
Sbjct: 299 DRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVLYFSSLTF 358
Query: 354 QDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 413
QDVGIT GALASL VGVTNFAGALCA YLMD++GRQ+LLIGSYLGMA+SM L+V A P
Sbjct: 359 QDVGITSGALASLFVGVTNFAGALCALYLMDRQGRQRLLIGSYLGMAVSMFLIVYAIISP 418
Query: 414 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV 473
+DE HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +TRGKIMGFSFSVHWVCNF+V
Sbjct: 419 VDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQTRGKIMGFSFSVHWVCNFVV 478
Query: 474 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 526
GL+FL+LVE GVAPVYA FGGVSLLSA+FAYYFIVETKGRSLEEIEMSLN N
Sbjct: 479 GLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKGRSLEEIEMSLNRN 531
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447125|ref|XP_002271129.1| PREDICTED: probable plastidic glucose transporter 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/540 (76%), Positives = 457/540 (84%), Gaps = 14/540 (2%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
M AT++H P+ VP S P +K K RF F RS K +V AAK+QLP
Sbjct: 1 MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60
Query: 54 ELRSRKQKQDGE-------NLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 106
EL ++K + E + + ++ +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVM
Sbjct: 61 ELHAQKPVEIRELGVAGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 120
Query: 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166
NGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLIL
Sbjct: 121 NGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLIL 180
Query: 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI 226
GA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGI
Sbjct: 181 GALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGI 240
Query: 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIAN 286
I SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +
Sbjct: 241 IVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRS 300
Query: 287 LWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVL 346
LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIGG LF LQQFAGINGVL
Sbjct: 301 LWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVL 360
Query: 347 YFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406
YFSSLTFQDVGIT GALASL VGVTNFAGALCA YLMD++GRQ+LLIGSYLGMA+SM L+
Sbjct: 361 YFSSLTFQDVGITSGALASLFVGVTNFAGALCALYLMDRQGRQRLLIGSYLGMAVSMFLI 420
Query: 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH 466
V A P+DE HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +TRGKIMGFSFSVH
Sbjct: 421 VYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQTRGKIMGFSFSVH 480
Query: 467 WVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 526
WVCNF+VGL+FL+LVE GVAPVYA FGGVSLLSA+FAYYFIVETKGRSLEEIEMSLN N
Sbjct: 481 WVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKGRSLEEIEMSLNRN 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136954|ref|XP_002326986.1| predicted protein [Populus trichocarpa] gi|222835301|gb|EEE73736.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/534 (74%), Positives = 444/534 (83%), Gaps = 18/534 (3%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQ--LPELRSR 58
M VATVL PV PV S ++ P K + F FS+R +V A K+Q LPE ++
Sbjct: 1 MWVATVLPKPVPPVLSVLTSSRNP---KQSSFHFRFSYRPLNLEVSATKQQQQLPEPKA- 56
Query: 59 KQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELG 118
D+K DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+AKELG
Sbjct: 57 ------------DKKNPSSSDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSVAKELG 104
Query: 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178
FEGN LEGLVVSIFIAGAF+GS++SGSL DKLGCRRTFQ+DTIPLILGA++SAQAHSLD
Sbjct: 105 FEGNSTLEGLVVSIFIAGAFLGSVASGSLVDKLGCRRTFQLDTIPLILGALVSAQAHSLD 164
Query: 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238
E+LWGRFLVGLGIGV+TVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFL IP+E
Sbjct: 165 EILWGRFLVGLGIGVHTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIASLFLDIPSET 224
Query: 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE 298
DPHWWRT+LY+AS PGFILALGMQF VESPRWLCK G L+DAK VI N+WG SE+ AI+
Sbjct: 225 DPHWWRTILYLASAPGFILALGMQFAVESPRWLCKVGRLDDAKTVIRNIWGSSEVETAIQ 284
Query: 299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI 358
+FQ VIK +G ++ S W ELLEEPHSRVAFIGGALF+LQQFAGINGVLYFSSLTF+DVGI
Sbjct: 285 DFQSVIKNNGVNVGSGWLELLEEPHSRVAFIGGALFVLQQFAGINGVLYFSSLTFKDVGI 344
Query: 359 TDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418
T +LASL VG+ NFAGALCA YLMDKEGRQKLLIGSYLGMA+SM L+ A P+DE+
Sbjct: 345 TSSSLASLFVGLANFAGALCAVYLMDKEGRQKLLIGSYLGMAVSMFLIACAIGFPVDEEL 404
Query: 419 SHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478
SHNLSILGTL YIFTFAIGAGPVTGL+IPELSS + RGKIMGFSFSVHWVCNFLVGL FL
Sbjct: 405 SHNLSILGTLMYIFTFAIGAGPVTGLIIPELSSAKMRGKIMGFSFSVHWVCNFLVGLLFL 464
Query: 479 DLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTPGNK 532
DLVE FGVAPVY GFG VSLL+A++A YF+VETKGRSLEEIEMSLN N + +K
Sbjct: 465 DLVEIFGVAPVYTGFGSVSLLAAIYAKYFLVETKGRSLEEIEMSLNPNFSVRDK 518
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848760|ref|XP_002892261.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata] gi|297338103|gb|EFH68520.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/515 (75%), Positives = 436/515 (84%), Gaps = 8/515 (1%)
Query: 19 STLFTPSPAKMKTLRFSFSHRSTK------FKVLAAKKQLPELRSRKQKQDGENLLSRDQ 72
+T+ P + L FS+ R T F K ++ L + K K D ++ LS D+
Sbjct: 5 NTVILHQPNSLTRLTFSYPTRLTHSRKVSPFSRFLRKNRVTALSTTK-KPDEDHELSPDE 63
Query: 73 KAEE-GFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVS 131
K E+ DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN ILEGLVVS
Sbjct: 64 KLEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVS 123
Query: 132 IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI 191
IFIAGAF+GSI SG L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GRFLVGLGI
Sbjct: 124 IFIAGAFIGSIVSGPLVDKFGYRRTFQIVTIPLILGALVSAQAHSLDEILCGRFLVGLGI 183
Query: 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251
GVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWRTMLY+AS
Sbjct: 184 GVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVAS 243
Query: 252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL 311
+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SEI KA+E+FQ V+K +GS+L
Sbjct: 244 MPGFLLALGMQFAVESPRWLCKVGQLDDAKVVIRNIWGGSEIEKAVEDFQSVMKNNGSNL 303
Query: 312 DSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVT 371
+S+W ELL++PHSRVAFIGG LF+LQQFAGINGVLYFSS+TFQ+VGIT GA ASL VGVT
Sbjct: 304 NSRWLELLDKPHSRVAFIGGTLFVLQQFAGINGVLYFSSITFQNVGITSGAQASLYVGVT 363
Query: 372 NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYI 431
NFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V + PLDED S +LSILGTL YI
Sbjct: 364 NFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYSVGFPLDEDLSQSLSILGTLMYI 423
Query: 432 FTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYA 491
F+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE FGV VYA
Sbjct: 424 FSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVEKFGVGTVYA 483
Query: 492 GFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 526
GFG VSLL+A F+Y FIVETKGRSLEEIEMSLN+
Sbjct: 484 GFGSVSLLAAAFSYRFIVETKGRSLEEIEMSLNSR 518
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463102|ref|XP_004149273.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/544 (71%), Positives = 444/544 (81%), Gaps = 16/544 (2%)
Query: 1 MRVATVLHHPVRPVPSYRSTLFTPSPAKMK-------TLR--FSFSHRST-KFKVLAAKK 50
MRV +LH PV P P+ P LR F + RS KF+VLA K
Sbjct: 1 MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFRSVRKFEVLATNK 60
Query: 51 QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
QLPEL+ K + + LL +AE G FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61 QLPELKDGKSESEEGILL----RAEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116
Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176
Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236
Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296
Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYF 348
GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIGGALF LQQFAGINGVLYF
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356
Query: 349 SSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 408
SSLTF+DVGIT+ A+ASL++G+TNF+GALCA YLMDK+GRQ+LLIGSYLGMA+SMLL+V
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSGALCALYLMDKQGRQRLLIGSYLGMAVSMLLIVS 416
Query: 409 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV 468
DE+ SHNLSI+GT+ YIF+FAIGAGPVTG++IPELSS R RGKIM FS +VHWV
Sbjct: 417 TIGFQFDEELSHNLSIVGTIAYIFSFAIGAGPVTGIIIPELSSTRARGKIMAFSLAVHWV 476
Query: 469 CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANST 528
CNFLVGLFFLDLV+TFGVAPVYA FG SL++A+F+ YF+VETKGRSLEEIEM+LN N
Sbjct: 477 CNFLVGLFFLDLVQTFGVAPVYASFGAFSLVAAIFSKYFLVETKGRSLEEIEMTLNTNFH 536
Query: 529 PGNK 532
+K
Sbjct: 537 GSDK 540
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505434|ref|XP_004162468.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/544 (71%), Positives = 446/544 (81%), Gaps = 16/544 (2%)
Query: 1 MRVATVLHHPVRPVPSYR-STLFTPSPAKMKTLRFSFSHRS---------TKFKVLAAKK 50
MRV +LH PV P P+ + + P+ + SF RS KF+VLA K
Sbjct: 1 MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFPSVRKFEVLATNK 60
Query: 51 QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
QLPEL+ K + + LL +AE G FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61 QLPELKDGKSESEEGILL----RAEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116
Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176
Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236
Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296
Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYF 348
GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIGGALF LQQFAGINGVLYF
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356
Query: 349 SSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 408
SSLTF+DVGIT+ A+ASL++G+TNF+GALCA YLMDK+GRQ+LLIGSYLGMA+SMLL+V
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSGALCALYLMDKQGRQRLLIGSYLGMAVSMLLIVS 416
Query: 409 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV 468
DE+ SHNLSI+GT+ YIF+FAIGAGPVTG++IPELSS R RGKIM FS +VHWV
Sbjct: 417 TIGFQFDEELSHNLSIVGTIAYIFSFAIGAGPVTGIIIPELSSTRARGKIMAFSLAVHWV 476
Query: 469 CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANST 528
CNFLVGLFFLDLV+TFGVAPVYA FG SL++A+F+ YF+VETKGRSLEEIEM+LN N
Sbjct: 477 CNFLVGLFFLDLVQTFGVAPVYASFGAFSLVAAIFSKYFLVETKGRSLEEIEMTLNTNFH 536
Query: 529 PGNK 532
+K
Sbjct: 537 GSDK 540
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877902|gb|ADP37182.1| putative monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/433 (84%), Positives = 397/433 (91%)
Query: 94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC 153
MSNFLFGYHIGVMNGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GC
Sbjct: 1 MSNFLFGYHIGVMNGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGC 60
Query: 154 RRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213
RRT QIDTIPLILGA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS
Sbjct: 61 RRTLQIDTIPLILGALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 120
Query: 214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK 273
LGTLCQ+GTCLGII SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK
Sbjct: 121 LGTLCQIGTCLGIIVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCK 180
Query: 274 GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGAL 333
G LN+AK +I +LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIGG L
Sbjct: 181 AGRLNEAKTIIRSLWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTL 240
Query: 334 FLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLI 393
F LQQFAGINGVLYFSSLTFQDVGIT GALASL VGVTNFAGALCA YLMD++GRQ+LLI
Sbjct: 241 FFLQQFAGINGVLYFSSLTFQDVGITSGALASLFVGVTNFAGALCALYLMDRQGRQRLLI 300
Query: 394 GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR 453
GSYLGMA+SM L+V A P+DE HNLSILGTL YIF+FAIGAGPVTGL+IPELSS +
Sbjct: 301 GSYLGMAVSMFLIVYAIISPVDEQLGHNLSILGTLMYIFSFAIGAGPVTGLIIPELSSTQ 360
Query: 454 TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513
TRGKIMGFSFSVHWVCNF+VGL+FL+LVE GVAPVYA FGGVSLLSA+FAYYFIVETKG
Sbjct: 361 TRGKIMGFSFSVHWVCNFVVGLYFLELVEKLGVAPVYASFGGVSLLSAIFAYYFIVETKG 420
Query: 514 RSLEEIEMSLNAN 526
RSLEEIEMSLN N
Sbjct: 421 RSLEEIEMSLNRN 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462225|ref|XP_003601394.1| hypothetical protein MTR_3g080240 [Medicago truncatula] gi|355490442|gb|AES71645.1| hypothetical protein MTR_3g080240 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/534 (71%), Positives = 431/534 (80%), Gaps = 28/534 (5%)
Query: 22 FTPSPAKMKTLRFSF--SHRSTKFKVLAAKKQ-LPELRSRKQKQDGE----NLLSRDQKA 74
F+ K+KT+ +S S R +K +V A K Q E ++ D E + L +
Sbjct: 23 FSKPKIKIKTIPYSLNSSFRLSKLRVSATKDQNHSESQTSNNVSDDEVTEQHPLDENGGV 82
Query: 75 EEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFI 134
GFDLGWLP+FPHVLIAS+SNF FGYHIG+MNGPI+SIA+ELGFEGN +EGLVVSIFI
Sbjct: 83 GGGFDLGWLPSFPHVLIASLSNFTFGYHIGIMNGPIISIARELGFEGNSFIEGLVVSIFI 142
Query: 135 AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVN 194
AGAF+GS+S+GSL DKLGCR TFQIDTIPLILGAIISA AHSLDE+L GRFLVGLGIGVN
Sbjct: 143 AGAFIGSLSTGSLVDKLGCRLTFQIDTIPLILGAIISANAHSLDEILGGRFLVGLGIGVN 202
Query: 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254
VLVPIYISEVAPTKYRGSLG+LCQ+GTCLGII SL LGIP+E+DPHWWRTMLYIAS+PG
Sbjct: 203 AVLVPIYISEVAPTKYRGSLGSLCQIGTCLGIIASLSLGIPSENDPHWWRTMLYIASVPG 262
Query: 255 FILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314
F++ LGMQF V+SPRWLCK G +NDAK V+ LWG SE+ AIEEFQ V K DGSDLDS+
Sbjct: 263 FVVGLGMQFAVDSPRWLCKAGRINDAKRVVWELWGASEVEGAIEEFQSVSKNDGSDLDSR 322
Query: 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA 374
WSE+LE+PHSRVAFIGGALF+LQQFAGIN VLYFSSLTFQDVGI ALASL VG+TNFA
Sbjct: 323 WSEILEQPHSRVAFIGGALFVLQQFAGINAVLYFSSLTFQDVGIQSSALASLFVGLTNFA 382
Query: 375 GALCASYLMDKEGRQKLLIGSYLGM---------------------AISMLLVVGATSLP 413
GALCA YL+D+EGRQKL+IGSYLGM AISM LVV A P
Sbjct: 383 GALCALYLIDREGRQKLIIGSYLGMVSVCKMLVTSFLEYVNKSIMHAISMFLVVYAVIFP 442
Query: 414 LDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV 473
LDE S+NLSILGT+ YIF+FAIGAGPVTG++IPELSS RTRGKIMGFSFS HWVCNF+V
Sbjct: 443 LDEQLSNNLSILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTHWVCNFVV 502
Query: 474 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANS 527
GLFFL+LVE FGVAPVYA FG VSLL+A FA+YF+VETKG SLEEIE SLN+ +
Sbjct: 503 GLFFLELVEKFGVAPVYASFGAVSLLAAAFAHYFLVETKGCSLEEIERSLNSKA 556
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561706|ref|NP_171996.2| putative plastidic glucose transporter 1 [Arabidopsis thaliana] gi|117940084|sp|Q0WVE9.2|PLST1_ARATH RecName: Full=Probable plastidic glucose transporter 1 gi|53828535|gb|AAU94377.1| At1g05030 [Arabidopsis thaliana] gi|55733727|gb|AAV59260.1| At1g05030 [Arabidopsis thaliana] gi|332189660|gb|AEE27781.1| putative plastidic glucose transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/467 (78%), Positives = 412/467 (88%)
Query: 60 QKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF 119
+K D ++ +S + DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGF
Sbjct: 54 KKPDDDHEISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGF 113
Query: 120 EGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE 179
EGN ILEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE
Sbjct: 114 EGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDE 173
Query: 180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239
+L GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDD
Sbjct: 174 ILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDD 233
Query: 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299
PHWWRTMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+
Sbjct: 234 PHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVED 293
Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT 359
FQ V+K GS+L+S+W ELL++PHSRVAFIGG+LF+LQQFAGINGVLYFSSLTFQ+VGIT
Sbjct: 294 FQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGIT 353
Query: 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419
GA ASL VGVTNFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A PLDED S
Sbjct: 354 SGAQASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLS 413
Query: 420 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 479
+LSILGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFLVGLFFLD
Sbjct: 414 QSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLD 473
Query: 480 LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 526
LVE +GV VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+
Sbjct: 474 LVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNSR 520
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547853|ref|XP_003542319.1| PREDICTED: probable plastidic glucose transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/521 (72%), Positives = 421/521 (80%), Gaps = 18/521 (3%)
Query: 4 ATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQD 63
A V H P P S +R S H S K KV A L+S + K
Sbjct: 10 AIVSVHYSEPSPKLVSISRARDKPYTLVIRSS-GHLSNKLKVSA-------LKSNETKPK 61
Query: 64 GENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP 123
+L GWLPAFPHVL+ASMSNF+FGYHIGVMNGPIVSIA+ELGFEGN
Sbjct: 62 QFSLCQN----------GWLPAFPHVLVASMSNFIFGYHIGVMNGPIVSIARELGFEGNS 111
Query: 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183
+EGLVVSIFIAGAF+GSISS SL D+LG R TFQI++IPLILGAIISAQAHSL+E++ G
Sbjct: 112 FIEGLVVSIFIAGAFIGSISSASLLDRLGSRLTFQINSIPLILGAIISAQAHSLNEIIGG 171
Query: 184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243
RFLVGLGIGVNTVLVPIYISEVAPTKYRG+LG+LCQ+GTCLGIITSLFLGIP+E+DPHWW
Sbjct: 172 RFLVGLGIGVNTVLVPIYISEVAPTKYRGALGSLCQIGTCLGIITSLFLGIPSENDPHWW 231
Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
RTMLYIAS+PG ++ALGMQF V+SPRWLCK G +NDAK V+ LWG SE++ AIEEFQ V
Sbjct: 232 RTMLYIASIPGILVALGMQFAVDSPRWLCKAGRINDAKTVVRELWGASEVDSAIEEFQSV 291
Query: 304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGAL 363
K DGSDL S+WSE+LEEPHSRVAFIGG LF+LQQFAGINGVLYFSSLTFQ VG+ AL
Sbjct: 292 SKNDGSDLASRWSEILEEPHSRVAFIGGTLFVLQQFAGINGVLYFSSLTFQKVGVESSAL 351
Query: 364 ASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 423
ASL VG+TNFAGALCA YL+D+EGRQKLLIGSYLGMAISM LV PLDE +NLS
Sbjct: 352 ASLFVGLTNFAGALCALYLIDREGRQKLLIGSYLGMAISMFLVASGIIFPLDEQLGNNLS 411
Query: 424 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483
ILGT+ YIF+FAIGAGPVTG++IPELSS RTRGKIMGFSFS HWVCNF+VGLFFL+LV+
Sbjct: 412 ILGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSFSTHWVCNFVVGLFFLELVDK 471
Query: 484 FGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLN 524
FGVAPVYA FG +SLL+A FAYYFIVETKGRSLEEIE SLN
Sbjct: 472 FGVAPVYASFGAISLLAATFAYYFIVETKGRSLEEIERSLN 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2205548 | 524 | AT1G05030 [Arabidopsis thalian | 0.966 | 0.980 | 0.735 | 2.6e-198 | |
| TAIR|locus:2019554 | 494 | AT1G67300 [Arabidopsis thalian | 0.868 | 0.935 | 0.465 | 4e-106 | |
| TAIR|locus:2181422 | 546 | PGLCT "plastidic GLC transloca | 0.827 | 0.805 | 0.437 | 1.1e-103 | |
| TAIR|locus:2017899 | 495 | SGB1 "SUPPRESSOR OF G PROTEIN | 0.828 | 0.890 | 0.462 | 6.4e-99 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.629 | 0.577 | 0.345 | 1.6e-55 | |
| DICTYBASE|DDB_G0278261 | 630 | DDB_G0278261 "solute carrier f | 0.798 | 0.674 | 0.314 | 8.9e-54 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.672 | 0.552 | 0.303 | 9.7e-53 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.627 | 0.512 | 0.306 | 1.3e-52 | |
| UNIPROTKB|E1BML6 | 648 | SLC2A13 "Uncharacterized prote | 0.672 | 0.552 | 0.298 | 6.3e-52 | |
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 0.804 | 0.840 | 0.309 | 1.3e-50 |
| TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1920 (680.9 bits), Expect = 2.6e-198, P = 2.6e-198
Identities = 383/521 (73%), Positives = 432/521 (82%)
Query: 5 TVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDG 64
TVL + RP R T P+ SFS F+ KK++ L ++K D
Sbjct: 6 TVLLY--RPNSMNRLTFSYPTRLAHSRKASSFSRF---FRSSKRKKRVTTLSTKKPDDDH 60
Query: 65 ENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPI 124
E +S + DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN I
Sbjct: 61 E--ISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSI 118
Query: 125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184
LEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GR
Sbjct: 119 LEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGR 178
Query: 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244
FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWR
Sbjct: 179 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWR 238
Query: 245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVI 304
TMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+FQ V+
Sbjct: 239 TMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVM 298
Query: 305 KKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALA 364
K GS+L+S+W ELL++PHSRVAFIGG+LF+LQQFAGINGVLYFSSLTFQ+VGIT GA A
Sbjct: 299 KNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQA 358
Query: 365 SLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSI 424
SL VGVTNFAGALCASYL+DK+GR+KLLIGSYLGMA+SM L+V A PLDED S +LSI
Sbjct: 359 SLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSI 418
Query: 425 LGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 484
LGTL YIF+FAIGAGPVTGL+IPELSSNRTRGKIMGFSFSVHWV NFLVGLFFLDLVE +
Sbjct: 419 LGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKY 478
Query: 485 GVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNA 525
GV VYA FG VSLL+A F++ F VETKGRSLEEIE+SLN+
Sbjct: 479 GVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLNS 519
|
|
| TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
Identities = 218/468 (46%), Positives = 306/468 (65%)
Query: 62 QDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE 120
+D LL D E E + W + PHVL+A++S+FLFGYH+GV+N P+ SI+ +LGF
Sbjct: 27 EDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFLFGYHLGVVNEPLESISSDLGFS 86
Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180
G+ + EGLVVS+ + GAF+GS+ SG +AD G RR FQI +P+ILGA +S ++SL M
Sbjct: 87 GDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSLAVM 146
Query: 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240
L GRFLVG G+G+ + +Y++EV+P RG+ G+ Q+ TCLG++ +LF+GIP +
Sbjct: 147 LLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNIT 206
Query: 241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE- 299
WWR +++++P +LALGM ESP+WL K G + +A+A L G S + A+ E
Sbjct: 207 GWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAEL 266
Query: 300 FQLVIKK-DGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI 358
++L + K D D+ S SELL HSRV FIG LF LQQ +GIN V YFSS F+ G+
Sbjct: 267 YKLDLDKTDEPDVVSL-SELLYGRHSRVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGV 325
Query: 359 TDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS-MLLVVGATSLPLDED 417
L ++ VGV+N G++ A LMDK GR+ LL+ S++GM S M L VGATS L
Sbjct: 326 PSD-LGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLWSFIGMVCSAMALQVGATSSYLPHF 384
Query: 418 FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477
+ LS+ GTL ++ TFA+GAGPV GL++PE+ +R R K M F SVHWV NF VGL F
Sbjct: 385 SALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAFCMSVHWVINFFVGLLF 444
Query: 478 LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNA 525
L L+E G +Y+ F L++ +F ++ETKG++L+EIE+SL A
Sbjct: 445 LRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQEIEISLLA 492
|
|
| TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
Identities = 193/441 (43%), Positives = 296/441 (67%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGS 146
P V +A + LFGYH+GV+NG + +AK+LG N +L+G +VS +AGA VGS + G+
Sbjct: 107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166
Query: 147 LADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206
LADK G RTFQ+D IPL +GA + A A S+ M+ GR L G+GIG+++ +VP+YISE++
Sbjct: 167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226
Query: 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266
PT+ RG+LG++ Q+ C+GI+ +L G+P +P WWRTM +A +P +LA+GM F+ E
Sbjct: 227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286
Query: 267 SPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326
SPRWL + G +++A+ I L+G+ + + + + + S+ ++ W +L + +V
Sbjct: 287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWKV 345
Query: 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKE 386
+G ALFL QQ AGIN V+Y+S+ F+ GI AS LVG +N G AS LMDK
Sbjct: 346 VSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKM 405
Query: 387 GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 446
GR+ LL+ S+ GMA+SMLL+ + + +S L+++GT+ Y+ +F++GAGPV L++
Sbjct: 406 GRKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLL 465
Query: 447 PELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 506
PE+ ++R R K + S +HW+ NF++GL+FL +V FG++ VY GF GV +L+ L+
Sbjct: 466 PEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAG 525
Query: 507 FIVETKGRSLEEIEMSLNANS 527
+VETKGRSLEEIE++L + +
Sbjct: 526 NVVETKGRSLEEIELALTSGA 546
|
|
| TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 210/454 (46%), Positives = 292/454 (64%)
Query: 77 GFDLG---WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF 133
G D G W + PHVL+AS+++ LFGYH+GV+N + SI+ +LGF GN I EGLVVS
Sbjct: 43 GKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTC 102
Query: 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV 193
+ GAF+GS+ SG +AD +G RR FQ+ +P+I+GA +SA SL ML GRFLVG+G+G+
Sbjct: 103 LGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGI 162
Query: 194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP 253
+ +Y++EV+P RG+ G+ Q+ TC+G++ SLF GIPA+D+ WWR +I+++P
Sbjct: 163 GPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVP 222
Query: 254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD-GSDLD 312
+LA+ M+ VESP+WL K G +A+AV L G S + A+ E ++K D G D D
Sbjct: 223 AAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAE---LVKSDRGDDAD 279
Query: 313 S-QWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVT 371
S + SELL RV FIG LF LQQ +GIN V YFSS F+ G+ A A++ VGV
Sbjct: 280 SAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVC 338
Query: 372 NFAGALCASYLMDKEGRQKLLIGSYLGMAISM-LLVVGATSLPLDEDFSHN-LSILGTLF 429
N G+ A LMDK GR+ LLIGS+ GMA+S+ L + TSLP F LS+ G L
Sbjct: 339 NLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLP--SPFGTLFLSVGGMLL 396
Query: 430 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV 489
++ +FA GAGPV L++ E+ R R + +VHWV NF VGL FL ++E G +
Sbjct: 397 FVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLL 456
Query: 490 YAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSL 523
A FG +++ +F +VETKG+SL+EIE+SL
Sbjct: 457 NAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISL 490
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 122/353 (34%), Positives = 182/353 (51%)
Query: 71 DQKA-EEGFDLGWLPAFPHVL----IASMSNFLFGYHIGVMNGPIVSIAKEL-GFEGNPI 124
D+ A +E F L W P+VL A + LFGY GV++G ++ I + + N
Sbjct: 11 DESAFKECFSLTWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTW 68
Query: 125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184
L+ ++VS+ +AGA VG+ G DKLG R + +LGAII A A + ++ GR
Sbjct: 69 LQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGR 128
Query: 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244
VGLG+G+ ++ P+YISE +P K RG+L + G S + + D WR
Sbjct: 129 VFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWR 188
Query: 245 TMLYIASLPGFILALGMQFTV-ESPRWLCKGGMLNDAKAVIANLWG----ESEINKAIEE 299
ML IA +P +L + FT+ ESPRWL + G +AKA++ ++ E EI +
Sbjct: 189 WMLGIAGIPA-LLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDS 247
Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGA-LFLLQQFAGINGVLYFSSLTFQDVGI 358
+ I ++GS +L + R I G L + QQF GIN V+Y+S Q G
Sbjct: 248 VETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGF 307
Query: 359 TDGALASLLVGVT---NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 408
A LL VT N G++ + Y +D+ GR+KLLI S G+ IS+ ++ G
Sbjct: 308 ASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTG 360
|
|
| DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 143/455 (31%), Positives = 242/455 (53%)
Query: 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
+V + +S FGY+ GV++ I+ I G N + ++VS + GA +GS SG
Sbjct: 182 NVSFSVLSTLQFGYNTGVISPTILDIQTIFGLNVNE--KSMLVSSVLFGAMLGSFLSGFF 239
Query: 148 ADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207
D G ++T + + +LG ++ + + +L GR + G+G+G+ + +VP+YI+E++P
Sbjct: 240 VDIFGRKKTLLGNNLFYLLGPLLCSVGKNYATLLIGRLITGVGVGIASSVVPLYITEISP 299
Query: 208 TKYRGSLGTLCQVGTCLGI-ITSLFL-GIPAEDDPHWWRTMLYIASLPG-FILALGMQFT 264
+RGSLG L Q LGI ++SLF G+ + WR IAS+P F LG F
Sbjct: 300 PSFRGSLGLLRQSTVTLGIMLSSLFAYGLLVYSNG--WRYTFAIASIPSLFQFILGYWF- 356
Query: 265 VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQL------VIKKDGSDLDSQWSEL 318
VESPRWL ++AK ++ + E +++ + + Q+ V+++ G+D W +L
Sbjct: 357 VESPRWLVSKNREDEAKQIMKKI--EPHVSEDLIDLQITRIRSSVLEQKGND---NWLQL 411
Query: 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGA--LASLLVGVTNFAGA 376
+ + ++ IG L +LQQF GIN V+Y+S + +D G A L LVG+
Sbjct: 412 FQYQYLKIYIIGFGLNMLQQFVGINCVIYYSGIILEDAGFAKNAAVLIGALVGIPQLVML 471
Query: 377 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA----TSLP---LDEDFSHNLSILGTLF 429
L + +L+D+ GR+ LL+ +GM I L V+G S P +D +++ G +F
Sbjct: 472 LISVWLIDRFGRKPLLLVGCIGMIIG-LAVLGYPFYDNSNPTGKIDNTKKGWIAVAGMIF 530
Query: 430 YIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAP 488
+ F++G GP+ L+ E+ ++ RGK M S ++W N +V +L +V + G A
Sbjct: 531 FKLMFSMGLGPIPALIGSEIFPSKIRGKAMAISQLLNWAANCIVNSMYLHMVNSKLGQAG 590
Query: 489 VYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSL 523
+ FGG+S+++ F + ETK +EE+ L
Sbjct: 591 TFWFFGGISIITFFFVLILVPETKNVQIEELSKRL 625
|
|
| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 9.7e-53, Sum P(2) = 9.7e-53
Identities = 113/372 (30%), Positives = 193/372 (51%)
Query: 45 VLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVL--IASMSNFLFGYH 102
+LAA + L+S G L R A F PAF +V+ +++ FLFGY
Sbjct: 41 LLAAAESSTSLQSAGAGGGGVGDLER--AARRQFQQDETPAFVYVVAVFSALGGFLFGYD 98
Query: 103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162
GV++G ++ + ++L + + + L+VS + A V +++ G+L G R + +
Sbjct: 99 TGVVSGAMLLLKRQLSLDA--LWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASA 156
Query: 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
G+ + A A++ + +L GR +VGLGIG+ ++ VP+YI+EV+P RG L T+ +
Sbjct: 157 LFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFI 216
Query: 223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
G S+ G + WR ML +A++P I G F ESPRWL + G A+
Sbjct: 217 TGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKAR 276
Query: 282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS---ELLEEPHSRVAFIGGA-LFLLQ 337
+++ + G I++ + + I+++ ++ S +L P +R A I G L + Q
Sbjct: 277 RILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQ 336
Query: 338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVT---NFAGALCASYLMDKEGRQKLLIG 394
Q +GIN ++Y+S+ Q G+ D LA L VT NF L +L++K GR+KL G
Sbjct: 337 QLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFG 396
Query: 395 SYLGMAISMLLV 406
S G ++++++
Sbjct: 397 SLAGTTVALIIL 408
|
|
| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 106/346 (30%), Positives = 183/346 (52%)
Query: 71 DQKAEEGFDLGWLPAFPHV--LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGL 128
++ A F PAF +V + +++ FLFGY GV++G ++ + ++L + + + L
Sbjct: 69 ERAARRQFQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDA--LWQEL 126
Query: 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVG 188
+VS + A V +++ G+L G R + + G+ + A A + + +L GR +VG
Sbjct: 127 LVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRLVVG 186
Query: 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG-IITSLFLGIPAEDDPHWWRTML 247
LGIG+ ++ VP+YI+EV+P RG L T+ + G S+ G + WR ML
Sbjct: 187 LGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYML 246
Query: 248 YIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD 307
+A++P I G F ESPRWL + G A+ +++ + G I++ + + I+++
Sbjct: 247 GLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEE 306
Query: 308 GSDLDSQWS---ELLEEPHSRVAFIGGA-LFLLQQFAGINGVLYFSSLTFQDVGITDGAL 363
++ S +L P +R A I G L + QQ +GIN ++Y+S+ Q G+ D L
Sbjct: 307 EKEVGSAGPVIYRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRL 366
Query: 364 ASLLVGVT---NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406
A L VT NF L +L++K GR+KL GS G +++L++
Sbjct: 367 AIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVL 412
|
|
| UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 6.3e-52, Sum P(2) = 6.3e-52
Identities = 111/372 (29%), Positives = 192/372 (51%)
Query: 45 VLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVL--IASMSNFLFGYH 102
+LAA + L+ G L R A F PAF +V+ +++ FLFGY
Sbjct: 41 LLAAAESSASLQGAGAGGGGVGDLER--AARRQFQQDETPAFVYVVAVFSALGGFLFGYD 98
Query: 103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162
GV++G ++ + ++L + + + L+VS + A V +++ G+L G R + +
Sbjct: 99 TGVVSGAMLLLKRQLSLDA--MWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASA 156
Query: 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
G+ + A A++ + +L GR +VGLGIG+ ++ VP+YI+EV+P RG L T+ +
Sbjct: 157 LFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFI 216
Query: 223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
G S+ G + WR ML +A++P I G F ESPRWL + G A+
Sbjct: 217 TGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKAR 276
Query: 282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS---ELLEEPHSRVAFIGGA-LFLLQ 337
+++ + G I++ + + I+++ ++ S +L P +R A I G L + Q
Sbjct: 277 RILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQ 336
Query: 338 QFAGINGVLYFSSLTFQDVGITDGALASLLVGVT---NFAGALCASYLMDKEGRQKLLIG 394
Q +GIN ++Y+S+ Q G+ D LA L +T NF L +L++K GR+KL G
Sbjct: 337 QLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFG 396
Query: 395 SYLGMAISMLLV 406
S G ++++++
Sbjct: 397 SLAGTTVALIIL 408
|
|
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 136/440 (30%), Positives = 216/440 (49%)
Query: 92 ASMSNFLFGYHIGVMNGPIVSIAKELGF-EGNPILEGLVVSIFIAGAFVGSISSGSLADK 150
A + LFGY GV++G ++ I + + + L+ +VS+ + GA +G+ + G + D
Sbjct: 38 AGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDY 97
Query: 151 LGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY 210
G ++ + GAI+ A A ++ GR LVGLG+GV +V P+YI+E +P++
Sbjct: 98 YGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEV 157
Query: 211 RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRW 270
RG L + + G S + P WR ML ++ +P I + M F ESPRW
Sbjct: 158 RGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPESPRW 217
Query: 271 LCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ-WSELLEEPHSRVAFI 329
L +A V+A + S + I+ +++ + + ++ R+AF+
Sbjct: 218 LFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFL 277
Query: 330 GGA-LFLLQQFAGINGVLYFSSLTFQDVGITDGALA---SLLVGVTNFAGALCASYLMDK 385
GA L QQF GIN V+Y+S Q G LA SL+V N AG + Y +D
Sbjct: 278 AGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDH 337
Query: 386 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN-----LSILGTLFYIFTFAIGAGP 440
GR+KL + S G+ IS LL++ + E S L++LG YI FA G GP
Sbjct: 338 CGRKKLALSSLFGVIIS-LLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGP 396
Query: 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS 500
V V E+ + RG G S +V+W+ N +V FL + E G + G+++L+
Sbjct: 397 VPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLA 456
Query: 501 ALFAYYFIVETKGRSLEEIE 520
+F F+ ET+G + E+E
Sbjct: 457 VIFVIVFVPETQGLTFSEVE 476
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P28568 | GTR3_CHICK | No assigned EC number | 0.3051 | 0.8045 | 0.8629 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3371 | 0.8063 | 0.9387 | yes | no |
| Q0WVE9 | PLST1_ARATH | No assigned EC number | 0.7858 | 0.8778 | 0.8912 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 8e-94 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-83 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-53 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-21 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-20 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-12 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-10 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 9e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-04 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 7e-04 | |
| PRK10504 | 471 | PRK10504, PRK10504, putative transporter; Provisio | 0.002 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.003 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 8e-94
Identities = 155/447 (34%), Positives = 249/447 (55%), Gaps = 15/447 (3%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGF---------EGNPILEGLVVSIFIAGAFV 139
L+A++ FLFGY GV+ + I F + +L GL+VSIF G +
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVL 197
GS+ +G L D+ G +++ I + ++GA++ A S ++ GR +VGLG+G +VL
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITS--LFLGIPAEDDPHWWRTMLYIASLPGF 255
VP+YISE+AP K RG+LG+L Q+G GI+ + + LG+ + WR L + +P
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 256 ILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315
+L +G+ F ESPRWL G L +A+AV+A L G S++++ I+E + +++ + W
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241
Query: 316 SELLEEPHSR-VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA 374
EL R +G L + QQ GIN + Y+S F+ +G++D L +++VGV NF
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301
Query: 375 GALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 434
A +L+D+ GR+ LL+ GMAI L++ A + ++I+ L +I F
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFF 361
Query: 435 AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG 494
A+G GPV +++ EL R K M + + +W+ NFL+G F + G V+ F
Sbjct: 362 ALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVFA 420
Query: 495 GVSLLSALFAYYFIVETKGRSLEEIEM 521
G+ +L LF ++F+ ETKGR+LEEI+
Sbjct: 421 GLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 4e-83
Identities = 153/456 (33%), Positives = 250/456 (54%), Gaps = 21/456 (4%)
Query: 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP------ILEGLVVSIFIAGAF 138
LIA++ +FGY GV+ G + A E F L GLVVSIF+ G F
Sbjct: 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85
Query: 139 VGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNT 195
+G++ +G L+D+ G +++ I + ++GAI+ A S++ ++ GR L+G+G+G+ +
Sbjct: 86 IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145
Query: 196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH--WWRTMLYIASLP 253
LVP+Y+SE+AP RG+L +L Q+ GI+ + G + WR L + +P
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205
Query: 254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD----GS 309
+L LG+ F ESPRWL G + +A+ +A L G S +K + + +I
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR 265
Query: 310 DLDSQWSELLEEPHS--RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALAS 365
+ W L R F+G L QQF GIN ++Y+S F++ G++ L S
Sbjct: 266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325
Query: 366 LLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL--VVGATSLPLDEDFSHNLS 423
++VG NFA A +L+D+ GR+ LL+ GMAI + + ++GA+ + S N++
Sbjct: 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA 385
Query: 424 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483
I+ L +I FA+G GPV +++ E+ R K + + + +W+ NF+VG F ++E+
Sbjct: 386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445
Query: 484 FGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 519
GV V+ FGG+++L +F Y+F+ ETKGR+LEEI
Sbjct: 446 IGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 2e-53
Identities = 133/469 (28%), Positives = 216/469 (46%), Gaps = 50/469 (10%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSI------AKELGFEGNPILEGLVVSIFIAGAFVGSI 142
L+A++ LFGY V++G + S+ + L L G V+ + G +G
Sbjct: 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73
Query: 143 SSGSLADKLGCRRTFQIDTIPLILGAIISA--------QAHSLDEMLWG----RFLVGLG 190
G +++ G R + +I + + A+ SA + R + G+G
Sbjct: 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 191 IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL--GIPAEDDPHW-----W 243
+G+ ++L P+YI+E+AP RG L + Q G + F+ I D W W
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
R M ++P + + + F E+PR+L G A+ ++ + G + +A++E
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI--- 250
Query: 304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI-TDGA 362
K D + L V IG L + QQF GIN VLY++ F+ +G TD A
Sbjct: 251 --KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308
Query: 363 L-ASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN 421
L +++VGV N + A +DK GR+ L I LGMAI M + A F
Sbjct: 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA--------FYTQ 360
Query: 422 ----LSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477
+++L LFY+ FA+ GPV +++ E+ N RGK + + + W+ N+ V F
Sbjct: 361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF 420
Query: 478 ------LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 520
LV F Y +G + +L+ALF + F+ ETKG++LEE+E
Sbjct: 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-21
Identities = 107/404 (26%), Positives = 170/404 (42%), Gaps = 41/404 (10%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
L S F G +GS G L+D+ G ++ + T+ + +++A + + L R L
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189
Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246
VG+GIG V + +E P K R +GTL QV LG++ L + A P WR +
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV---LLPLVAYFIPD-WRWL 245
Query: 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKK 306
SLP F+ L F ESPRWL G + +A ++ + + E L ++K
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK 305
Query: 307 DGSDLDSQWS--ELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGA-- 362
D S Q+S +L P+ R + ++ F Y+ L D+G G
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTL---CLMMLWFT--TAFSYY-GLVL-DLGNLGGNIY 358
Query: 363 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 422
L + G+ L L+D+ GR+ + S L +++LL++ +P+D + L
Sbjct: 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL---FVPVD---LYFL 412
Query: 423 SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL--VG------ 474
+ F A + L EL R +G VC+ + VG
Sbjct: 413 RTALAVLGKF-GITSAFQMVYLYTAELYPTVVRNLGVG-------VCSTMARVGSIISPF 464
Query: 475 LFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE 518
L +L F FGG++LL+ + F+ ETKG L E
Sbjct: 465 LVYLGEKWLF---LPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 9e-20
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 3/177 (1%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+L+ + FL G G+++ + +A++LG + GL+VS F G +GS+ +G L+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
D+ G RR + + LG+++ A A SL +L GRFL+GLG G I+E P
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
K RG L G LG + LG + WR + I ++ G +LAL + F +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLG-GLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 81/376 (21%), Positives = 143/376 (38%), Gaps = 33/376 (8%)
Query: 100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159
GY + M +I+ E G + P+ G + S + G G++ G LAD++G RR
Sbjct: 30 GYDLAAMGFAAPAISAEWGLD--PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87
Query: 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ 219
+ + ++ A A ++ ++L RFL GLG+G + +SE AP ++RG+ L
Sbjct: 88 SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMF 147
Query: 220 VGTCLGIITSLFLG---IPAEDDPHWWRTMLYIASL-PGFILALGMQFTVESPRWLCKGG 275
G +G FL IP WR++ Y+ + P +L L M+F ES +L
Sbjct: 148 CGYPIGAAVGGFLAGWLIPV----FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203
Query: 276 MLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFL 335
+ I N +A G+ L + +R+ + L+
Sbjct: 204 --PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF-KALFQGKTARITVLLWLLYF 260
Query: 336 LQQFA--GINGVLYF--SSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKL 391
+ + L L F + A L G++ +L D+ G +
Sbjct: 261 MLLVGVYFLTNWLPKLMVELGFSL---SLAATGGALFNFGGVIGSIIFGWLADRLGPRVT 317
Query: 392 LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL--VIPEL 449
+ LG ++L+ S L +LG + F G +GL ++
Sbjct: 318 ALLLLLGAVFAVLVGSTLFS-------PTLLLLLGAIAGFFV----NGGQSGLYALMALF 366
Query: 450 SSNRTRGKIMGFSFSV 465
R +G++ +
Sbjct: 367 YPTAIRATGVGWAIGI 382
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 70/380 (18%), Positives = 125/380 (32%), Gaps = 46/380 (12%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+ +A+ L +G +A++LG I GL+++ F G + +G L+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
D+ G RR I + LG ++ A SL +L R L GLG G I++ P
Sbjct: 57 DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116
Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268
+ RG L G LG LG WR I ++ + A+ +
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAVLAALLL--- 172
Query: 269 RWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328
+ K + + +
Sbjct: 173 ---------------------------PRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVL 205
Query: 329 IGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKE 386
LL +L + L + +G++ L L G+ G L L D+
Sbjct: 206 WLLLALLL-FGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264
Query: 387 GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLV 445
GR++ L+ + L + ++ L + + + + L + F G P +
Sbjct: 265 GRRRRLLLALLLLILAALGLALLS-------LTESSLWLLVALLLLGFGAGLVFPALNAL 317
Query: 446 IPELSSNRTRGKIMGFSFSV 465
+ +L+ RG G +
Sbjct: 318 VSDLAPKEERGTASGLYNTA 337
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 13/188 (6%)
Query: 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDV---GITDGALASLLVGVTNFAGALCASY 381
+ AL G G+L + L Q+V + L L G+ GAL
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 382 LMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 440
L D+ GR + LL+ L A+ +LL+ A SL L +L L + A P
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL---------LLVALLLLGFGLGFAFP 284
Query: 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS 500
+ EL+ RG G + + L L L++T G V+ ++LL+
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 501 ALFAYYFI 508
AL
Sbjct: 345 ALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 66/395 (16%), Positives = 120/395 (30%), Gaps = 55/395 (13%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
G +++ + G +G+ L +L RR I+ ++SA A S +L R L
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110
Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRT 245
GL GV + + + P RG L G L + + LG + WR
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ--LFGWRA 168
Query: 246 MLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK 305
++ + L + + + ++ L
Sbjct: 169 TFLAIAVLALLALLLLWKLLPPS---------EISGSLPGPLRTLLR------------- 206
Query: 306 KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALAS 365
LL P + + LF+ FA + + V + S
Sbjct: 207 ------------LLRRPGVLLGLLATFLFMTGHFALYT----YIRPFLESVAGFSVSAVS 250
Query: 366 ---LLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 422
L G+ F G L L D+ G ++ LI + L +A+++L L +
Sbjct: 251 LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA------LTF---TGASP 300
Query: 423 SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482
++ L +++ FA + + + + L +++
Sbjct: 301 ALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLD 360
Query: 483 TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 517
G A G LL AL R+
Sbjct: 361 ALGYAAT-GWVGAALLLLALLLALLSARKDRRTAA 394
|
Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 52/299 (17%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
G S I G G++ G LAD++G +R + L ++ +AQA +L R L
Sbjct: 53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112
Query: 187 VGLGIGVNTVLVPIYI---SEVAPTKYRGSLGTLCQVGT-CLGIITSLFLGIPAEDDPHW 242
G+G+G +P I SE + RG+ +L G G + S+ + A D
Sbjct: 113 TGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-- 167
Query: 243 WRTMLYIASL-PGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ 301
WR + Y+ + P ++ L M++ ES + G V+ L+GE +A
Sbjct: 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEG---RATATLL 224
Query: 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYF------SSLTFQD 355
L W +++ + VLYF S L Q
Sbjct: 225 L------------W----------ISYFFTLI-----------VLYFLLNWLPSLLVGQG 251
Query: 356 VGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL 414
+ + L + + G+L LMD+ +++++ Y G+ S+ + A S
Sbjct: 252 LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAG 310
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFV 139
L L +L+ +++ FL + + + +E+ GL++S+F G +
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS-AAEAGLLLSLFGLGGIL 226
Query: 140 GSISSGSLADKLGCRRTFQIDTIPL-ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV 198
G++ G L+D+LG RR + + L LG ++ A A SL +L L+G G+G +
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258
SE+AP + RG+ L LG L D + + I + + A
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL-LDTGGYGGVFLILAALALLAA 345
Query: 259 L 259
L
Sbjct: 346 L 346
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Query: 126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185
+G++ I G VG+ G LADKLG ++ I A S+ L+ R
Sbjct: 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL 263
Query: 186 LVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLGIITSLF-----------LG 233
L G GIG +V Y +E + RG L LC GI +
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323
Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
+ + H WR + + + P + F ESPR+ + G ++A ++
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMIL 374
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 71/409 (17%), Positives = 128/409 (31%), Gaps = 37/409 (9%)
Query: 111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170
+ ++LG G V S F G VG G L D+ G R+T + +++ +
Sbjct: 18 PMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTL---AVFIVIWGVF 72
Query: 171 SAQAHSLDEMLWG----RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG- 225
+ + R L+G + + ++ P R + ++ LG
Sbjct: 73 TG-LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131
Query: 226 -IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
I L I W+ I + G I + + P AK +
Sbjct: 132 IIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPP--------QKAKWLT 180
Query: 285 ANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGING 344
+ + + Q K + Q ELL++ RV + FL+ G+
Sbjct: 181 EEE--KYIVVGGLLAEQQG-KGPSTPKKYQIKELLKDR--RVWGLALGQFLVN--IGLGF 233
Query: 345 VLYFSSLTFQDVGITD---GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAI 401
L + + L G+ F G + L D R+ + AI
Sbjct: 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAI 293
Query: 402 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 461
LV + L ++ + L + F +GAG + +I + + G G
Sbjct: 294 IAGLV--LSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGL 351
Query: 462 SFSVHWVCNFLVGLFFLDLVETFGV-APVYAGFGGVSLLSALFAYYFIV 509
S+ + + + + T G A L +Y +V
Sbjct: 352 INSLGNLGGIVGPIVIGAIAATTGSFAGALM-VVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGS 146
VL ++ LFG+ + + + LG + +L GL++ + +G + G
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL--SALLAGLLLGLAGLLGAIGRLLLGR 259
Query: 147 LADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR---FLVGLGIGVNTVLVPIYIS 203
L+D+LG RR + + LIL A+ A + LW L+G G G+ + +S
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319
Query: 204 EVAPTKYRGSLGTLCQVGTCLGII 227
++AP + RG+ L LG
Sbjct: 320 DLAPKEERGTASGLYNTAGSLGGA 343
|
Length = 346 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 105/464 (22%), Positives = 164/464 (35%), Gaps = 82/464 (17%)
Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-------IDTIPLILGAIISAQ 173
+ V G G + G LADKLG +R + I T+ L S +
Sbjct: 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK 112
Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC----QVGTCLGIITS 229
+ W RF +G+GIG + L I SE A K+RG++ G G I +
Sbjct: 113 SVMATLCFW-RFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171
Query: 230 LFL------GIPAEDDPH------------WWRTMLYIASLPGFILALGMQFTV-ESPRW 270
L + + A D WR ++ ++P +LAL + T+ E+PR+
Sbjct: 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA-LLALYFRLTIPETPRY 230
Query: 271 LCKGG-----MLNDAKAVIA-NLWGESEINKAIEEFQLVIKKDGSDL---DSQWSE---L 318
+D AV+ + E + + V K SD +W L
Sbjct: 231 TADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHL 290
Query: 319 LEEPHS----RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLL-VGVTNF 373
L S +AF G L V+ S++ + T+ A L V N
Sbjct: 291 LGTAGSWFLLDIAFYGVNLN--------QKVI-LSAIGYSPPAATNNAYEELYKTAVGNL 341
Query: 374 AGALCAS--------YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL 425
AL + +L+D GR+ + + + + + + V+G + +H +
Sbjct: 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV-LFFVLGF---AYNHLSTHGFLAI 397
Query: 426 GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE--- 482
L F G T +V E+ R R G S + + FL L +
Sbjct: 398 YVLAQFF-ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD 456
Query: 483 -------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEI 519
+ V F L LF I ETKG+SLEE+
Sbjct: 457 PTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 21/188 (11%)
Query: 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVG--VTNFAGALCASYLMDK 385
+ L + L +D+G++ ++ + G+L A YL D+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 386 EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-----P 440
GR+++L+ L A+ LL+ A+SL L + F +G G P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLW--------------LLLVGRFLLGLGGGALYP 106
Query: 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLS 500
+I E + RG+ +G + + L L L E+ G ++ + LL
Sbjct: 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166
Query: 501 ALFAYYFI 508
AL + +
Sbjct: 167 ALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (96), Expect = 7e-04
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 8/191 (4%)
Query: 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
+L +++ L G +G+++ + + L +L GL++S F G +GS+ +G L
Sbjct: 4 LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63
Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVA 206
D+ G R+ I + +LG ++ A A ++ +L R L GLG G + +SE
Sbjct: 64 DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123
Query: 207 PTKYRGSL------GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260
P L +G LG + + L + + L IL L
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183
Query: 261 MQFTVESPRWL 271
+ + +PR
Sbjct: 184 LDLLLAAPRLP 194
|
Length = 338 |
| >gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
++N + S+A+ LG +P+ +V+ ++ V +SG LAD++G R F +
Sbjct: 28 IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85
Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
LG++ A + +L+E+L R L G+G ++VP+
Sbjct: 86 TLGSLFCALSGTLNELLLARVLQGVG---GAMMVPV 118
|
Length = 471 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
GL+++ + G + S SG L D+ G + + +L + A + ++ ++ RFL
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
G G V I+++ P + RG L G LG + LG
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107
|
Length = 141 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSIS 143
VL+ S+ FL+G+ I +N ++ KE+ F+ L+ F G F+ S+
Sbjct: 11 VKLAFVLLTSLF-FLWGF-ITCLNDILIPHLKEV-FDLTYFEASLIQFAFFGGYFIMSLP 67
Query: 144 SGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
+G L KLG + + + +GA + +A + S L F++ GIG+
Sbjct: 68 AGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127
Query: 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
Y++ + + L Q LG I LG
Sbjct: 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160
|
Length = 422 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.83 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.77 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.77 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.72 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.65 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.58 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.54 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.53 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.53 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.52 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.5 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.47 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.46 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.46 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.45 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.42 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.41 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.41 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.4 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.4 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.39 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.39 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.39 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.38 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.37 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.37 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.37 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.36 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.36 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.35 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.33 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.33 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.33 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.32 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.32 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.31 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.3 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.3 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.3 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.29 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.29 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.29 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.28 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.28 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.27 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.27 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.27 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.25 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.24 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.24 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.24 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.24 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.23 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.23 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.22 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.21 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.2 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.2 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.2 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.19 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.19 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.17 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.17 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.15 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.14 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.14 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.14 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.13 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.12 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.12 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.11 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.11 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.11 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.1 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.1 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.08 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.04 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.04 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.03 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.03 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.02 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.02 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.02 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.02 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.96 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.96 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.95 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.95 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.93 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.91 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.89 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.86 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.81 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.81 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.81 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.74 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.71 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.69 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.69 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.68 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.65 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.55 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.54 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.53 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.52 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.5 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.47 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.43 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.43 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.41 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.39 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.35 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.3 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.28 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.26 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.2 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.19 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.08 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.05 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.01 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.01 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.99 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.62 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.5 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.28 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.28 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.26 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.17 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.08 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.01 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.69 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.46 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.45 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.44 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.3 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.21 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.11 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.42 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.19 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.86 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.79 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.84 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.82 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.2 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.7 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.29 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.37 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.55 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 88.69 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 87.79 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 87.48 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 85.11 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 84.95 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 80.7 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 80.33 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=324.50 Aligned_cols=437 Identities=32% Similarity=0.566 Sum_probs=362.8
Q ss_pred HHHHHHHHhhhhhhccccccchhHHHH--------HhhCCCCChh----HHHHHHHHHHHHHHHHHHhhhccccccchhH
Q 009536 88 HVLIASMSNFLFGYHIGVMNGPIVSIA--------KELGFEGNPI----LEGLVVSIFIAGAFVGSISSGSLADKLGCRR 155 (532)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~ 155 (532)
.....+++.+-.++....+++..+.+. +.+|...++. ..+.+.+++.+|.++|+++.|.++||+|||.
T Consensus 12 ~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~ 91 (485)
T KOG0569|consen 12 AVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKN 91 (485)
T ss_pred HHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 345555566777888888888765443 4445333433 3577888999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhh---hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHh
Q 009536 156 TFQIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL 232 (532)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 232 (532)
.+.++.++..++.++..++ +++.+++++|++.|+..|........++.|..|++.||....+.+.+..+|.+++..+
T Consensus 92 ~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~ 171 (485)
T KOG0569|consen 92 ALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVL 171 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888877764 7899999999999999999999999999999999999999999999999999999777
Q ss_pred cCC--CCCCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhh-cCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhc--
Q 009536 233 GIP--AEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK-GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD-- 307 (532)
Q Consensus 233 ~~~--l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 307 (532)
+.. +.+... |++.+.+..+++++..+...++||+|||+.. +++.++|++.++.+++.++.+++.++.....+++
T Consensus 172 ~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~ 250 (485)
T KOG0569|consen 172 GLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEEL 250 (485)
T ss_pred ccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcc
Confidence 643 233344 9999999999999999999999999999987 8999999999999999987666555544333333
Q ss_pred cCCCcchhhhhhcCCcchHH-HHHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhh
Q 009536 308 GSDLDSQWSELLEEPHSRVA-FIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMD 384 (532)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d 384 (532)
.+....+++++++++..+.. .+...+....++.+.+...+|...++++.|.+. +.+.....++..++..+++.++.|
T Consensus 251 ~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid 330 (485)
T KOG0569|consen 251 EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID 330 (485)
T ss_pred ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356788999998776654 455566777888999999999999999998874 477888889999999999999999
Q ss_pred hcCCchhhhhhHHHHHHHHHHHHHHhcCCCCc-cchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHH
Q 009536 385 KEGRQKLLIGSYLGMAISMLLVVGATSLPLDE-DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF 463 (532)
Q Consensus 385 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 463 (532)
|+|||++++.+..++.+..+++.......... .+..+..+...+.+...++.|.+|+.+.+.+|++|++.|+.+.++..
T Consensus 331 ~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~ 410 (485)
T KOG0569|consen 331 RLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVAT 410 (485)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHH
Confidence 99999999999999988877776543321111 11222345667777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHHHHhcCC
Q 009536 464 SVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNAN 526 (532)
Q Consensus 464 ~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (532)
.++.+..++-...+..+.+..|. ..|+++.+.+++..+..++.+||||+|+..|+.++.++.
T Consensus 411 ~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 411 AVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999996 788889999999999999999999999999998887755
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=354.38 Aligned_cols=418 Identities=19% Similarity=0.215 Sum_probs=319.7
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
+..|..+++++++.+..+++...++.++|.+.+++++ +..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl--s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI--PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4456677788888888899999999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC----
Q 009536 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---- 238 (532)
Q Consensus 163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---- 238 (532)
+++++.++++++++++.++++|+++|++.|+..+...+++.|++|+++|++.++++.++..+|.++++.++..+..
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876544322
Q ss_pred ---------CcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcch-----HHH--HHHHHH
Q 009536 239 ---------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI-----NKA--IEEFQL 302 (532)
Q Consensus 239 ---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 302 (532)
..+ ||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+.. ... ....+.
T Consensus 321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 224 999999999888888888888999999999999999999999888765421 110 000000
Q ss_pred HHHh------ccCCC-----------------cchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc---
Q 009536 303 VIKK------DGSDL-----------------DSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV--- 356 (532)
Q Consensus 303 ~~~~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 356 (532)
.... +.... ...++++++.+..+..++... .++.....++++..|+|.++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~-~wf~~~~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMG-VWFTLSFGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 013455666655555444444 44445556777777877664331
Q ss_pred ---------------------------------------CC---------------------------------------
Q 009536 357 ---------------------------------------GI--------------------------------------- 358 (532)
Q Consensus 357 ---------------------------------------~~--------------------------------------- 358 (532)
+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00
Q ss_pred -------------------------------C-----hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 359 -------------------------------T-----DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 359 -------------------------------~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
+ .......+..++.+++.++.|+++||+|||+++.++.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 0123344566888999999999999999999999998888888
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 403 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
.+++.+.. ....++...++..++..+..+....+++|.+|++.|++++|+.+....+|++++|.+.+.+.+
T Consensus 639 ~ll~~~~~---------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 639 CFFLSFGN---------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766521 122222222333333344556677899999999999999999999999999999999998877
Q ss_pred hhCcchhhHhHHHHHHHHHHhhheeeccCCCCC
Q 009536 483 TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRS 515 (532)
Q Consensus 483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (532)
. +...+|++.+++.++++++.+ ++||++++.
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 5 456677777777777666554 558887754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=333.09 Aligned_cols=432 Identities=29% Similarity=0.506 Sum_probs=322.5
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhh--------CCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL--------GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~ 156 (532)
..+.+++..++.+..+++...+++..|.++++| +. +..+.+++.+++.++..++++++|+++||+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 455677778889999999999999999999988 55 78899999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhh------------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH
Q 009536 157 FQIDTIPLILGAIISAQA------------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224 (532)
Q Consensus 157 l~~~~~~~~~~~~~~~~a------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 224 (532)
++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHH
Q 009536 225 GIITSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKA 296 (532)
Q Consensus 225 g~~~g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (532)
|.++++.+++.+. +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..+.......
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence 9999887765432 3345 999999988888877777788999999988888888777776666544333222
Q ss_pred HHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHH
Q 009536 297 IEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFA 374 (532)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (532)
.++.....+++... .+..+.. .............+..........++.|.+.++.+.+ ...+.....++..++
T Consensus 247 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGRKT----GGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhhhh----hhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 22221111110000 0111110 1111111112222333344455667778887777765 345566667888899
Q ss_pred HhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccc
Q 009536 375 GALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRT 454 (532)
Q Consensus 375 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
+.++.++++||+|||++++.+..+.+++.+++....... ..........+++..+++....+..+.++.|.+|++.
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 397 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 397 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence 999999999999999999999988888877765432111 1112222333444444444455777889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH------HhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHHHHhcCCCC
Q 009536 455 RGKIMGFSFSVHWVCNFLVGLFFLDLV------ETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANST 528 (532)
Q Consensus 455 ~~~~~g~~~~~~~~g~~i~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (532)
|+++.|+.+...+++.++++.+.+.+. +..++...|++.+++++++.++.+++.+|+|+++.+|.+++.++..+
T Consensus 398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence 999999999999999999987776544 56778888888888888887777778899999988888777665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=331.65 Aligned_cols=429 Identities=20% Similarity=0.238 Sum_probs=306.9
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhh-C--CCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHh
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL-G--FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID 160 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~ 160 (532)
..+..+.++.++.+.++++...++.+.|.+.+++ + .+.++.+.+++.+.+.++..++++++|+++||+|||+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3455677888889999999999999999887753 1 112556778999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhc------HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcC
Q 009536 161 TIPLILGAIISAQAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (532)
Q Consensus 161 ~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 234 (532)
.+++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++.++.
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 7899999999999999999999999999999999999999999999999999888765
Q ss_pred CCCC-----------------------CcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChh-HHHHHHHHHcCC
Q 009536 235 PAED-----------------------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLN-DAKAVIANLWGE 290 (532)
Q Consensus 235 ~l~~-----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~ 290 (532)
.+.. ..+ ||+.|.+.++++++..+..+++||+|+|+..+++.+ ++.+.+.+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 4321 124 999999999888888888889999999998877764 455555555432
Q ss_pred cchHHHHHHHHHHHHhccCCCcchhhhhhcCC---cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh--H---
Q 009536 291 SEINKAIEEFQLVIKKDGSDLDSQWSELLEEP---HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--A--- 362 (532)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 362 (532)
+..++ .++.+...+ +++..+..++++++++ +.++..+......+.....++....+.|.++++.|.+.. +
T Consensus 252 ~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~ 329 (502)
T TIGR00887 252 KIEAE-PDEVEKAST-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNA 329 (502)
T ss_pred ccccC-cccccchhc-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhH
Confidence 21111 011110001 1111123566776532 222222222222222222333445567777777665421 1
Q ss_pred ---------HHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHH
Q 009536 363 ---------LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 433 (532)
Q Consensus 363 ---------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (532)
.......++.+++.++.++++||+|||++++.+..+.++++.++...... ...........+....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~ 404 (502)
T TIGR00887 330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-----LSTHGFLAIYVLAQFF 404 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHH
Confidence 01233445667788899999999999999888887777666655542110 0111111122222223
Q ss_pred HhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----------hCcchhhHhHHHHHHHHHHh
Q 009536 434 FAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET----------FGVAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~ 503 (532)
++.+..+..+.+..|.+|++.|+++.|+.+.+..++++++|.+.+.+.+. .++...|.+++++++++.+.
T Consensus 405 ~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 405 ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 34555667778889999999999999999999999999999999999884 34456778888877777664
Q ss_pred hheeeccCCCCCHHHHHH
Q 009536 504 AYYFIVETKGRSLEEIEM 521 (532)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~ 521 (532)
. +++||+++++.+|+++
T Consensus 485 ~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 485 T-LLIPETKGKSLEELSG 501 (502)
T ss_pred h-eEeccCCCCCHHhhhC
Confidence 4 6779999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=324.10 Aligned_cols=434 Identities=34% Similarity=0.637 Sum_probs=324.6
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCC------CChhHHHHHHHHHHHHHHHHHHhhhccccccchhHH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE------GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~ 156 (532)
++.+...+++.++.++..++...+.+.++.+..+++.+ .+..+.+++.+++.++..++++++|+++||+|||++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~ 103 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS 103 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence 33444556666677788899999999999999999884 348899999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhh---hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhc
Q 009536 157 FQIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233 (532)
Q Consensus 157 l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 233 (532)
++++.++++++.+++.+. .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999998654 35568999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCCCCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHH----HHHHHHh
Q 009536 234 ---IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE----FQLVIKK 306 (532)
Q Consensus 234 ---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 306 (532)
.......+ ||+.|++.++..++..+..++++|+|++...+++.++..+...+....++......+ .......
T Consensus 184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
T TIGR00879 184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262 (481)
T ss_pred HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 76666666 999999977777777777788899998877776666655555444332221111110 0011111
Q ss_pred ccCCCcchhhhhhcCC--cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhh
Q 009536 307 DGSDLDSQWSELLEEP--HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYL 382 (532)
Q Consensus 307 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l 382 (532)
+.+.....+.+.++.. ..+..++...+..+..........++.+.+.++.+.+. .+.......++.+++.++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (481)
T TIGR00879 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFL 342 (481)
T ss_pred HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111233333322 13444444444455445555566778888887777653 4667777788899999999999
Q ss_pred hhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCcc--chhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHH
Q 009536 383 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED--FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG 460 (532)
Q Consensus 383 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 460 (532)
.||++||+.+..+..+.+++++++.+......... ......+....++..+++.+..+....+..|.+|++.|+++.|
T Consensus 343 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 422 (481)
T TIGR00879 343 VDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422 (481)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHH
Confidence 99999999988887777777666653221110000 0123333444455555666666777778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHH
Q 009536 461 FSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 517 (532)
Q Consensus 461 ~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (532)
+.+...++|++++|.+.+.+.+..|+...|++.++++++++++.+++.+|+++++.+
T Consensus 423 ~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999999999999999988888888887778887766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=312.41 Aligned_cols=441 Identities=36% Similarity=0.635 Sum_probs=355.9
Q ss_pred hHHHHHHHHHHhhhhhhc--cccccchhHHHHHhhCCCC---Ch--hHHHHHHHHHHHHHHHHHHhhhccccccchhHHH
Q 009536 85 AFPHVLIASMSNFLFGYH--IGVMNGPIVSIAKELGFEG---NP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF 157 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l 157 (532)
.........++.+..+++ ....++....+.++..... +. .+.+|+.+.+.++..++++++|+++|++|||+.+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l 122 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL 122 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344455566666777775 6677777777777543211 12 3458999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 158 QIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
+++.+++.++.+++++++|+.+++++|+++|+|.|........+++|..|++.||...+..+....+|..++..++....
T Consensus 123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~ 202 (513)
T KOG0254|consen 123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS 202 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977766654
Q ss_pred CC-cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcC--CcchHHHHHHHHHHHH--hccCCCc
Q 009536 238 DD-PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWG--ESEINKAIEEFQLVIK--KDGSDLD 312 (532)
Q Consensus 238 ~~-~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~ 312 (532)
+. .+ ||..+.+..+.+++..+..+++||+|+|+.++++.+++++.+..+++ ..+...+.+....... ......+
T Consensus 203 ~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
T KOG0254|consen 203 KVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGK 281 (513)
T ss_pred cCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccc
Confidence 43 35 99999999999999888888899999999999999999999999998 3333333333331111 1111212
Q ss_pred chhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh-HHHHHHHHHHHHHHhhhhHhhhhhcCCchh
Q 009536 313 SQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG-ALASLLVGVTNFAGALCASYLMDKEGRQKL 391 (532)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 391 (532)
..+.++++....++..+...+..+.++.+.+...+|.+.+++..+.... .......++..+++.+++.++.||+|||++
T Consensus 282 ~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 282 ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 2356666645666677788888888999999999999999999888755 666777788888999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCC----ccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHH
Q 009536 392 LIGSYLGMAISMLLVVGATSLPLD----EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW 467 (532)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 467 (532)
++.+...+.++.+++......... .....+..+...+++...+..+..++.+.+.+|.+|.+.|+.+.++....+.
T Consensus 362 ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~ 441 (513)
T KOG0254|consen 362 LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW 441 (513)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH
Confidence 999999999999888775443211 2234456667777888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHH-hhheeeccCCCCCHHHHHHHhcCC
Q 009536 468 VCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL-FAYYFIVETKGRSLEEIEMSLNAN 526 (532)
Q Consensus 468 ~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 526 (532)
+...+-......+.+..+....|..+++++.+... ..+++.||+|+++.+|+++..++.
T Consensus 442 ~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 442 LWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 98888777777666665545667777777777766 678899999999999998877654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=287.49 Aligned_cols=373 Identities=20% Similarity=0.237 Sum_probs=294.8
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
..+..++.+.++.|..+....+....+|++.+|+|+ +..+.|++.+.|.++..++.++...+.||+.||++++..+.+
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~v--s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGV--SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 345568889999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
+.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+.+++.++|.++|.++.+..| |
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-W 166 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-W 166 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 244 RTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
|+.|++.+.++++..+.. ..+| |+. ..++......+..+.+|+|
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~---------------------------------~~~~~~~~~~~~~~~l~~p 211 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSE---------------------------------ISGSLPGPLRTLLRLLRRP 211 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--Ccc---------------------------------CCCCCCcchhHHHHHhcCc
Confidence 999999999998876555 4466 210 0011111122345667777
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
..+..++...+.+. +.+....|...++++ .+.+ ...+....++++.++|+.++|++.|| +.|+.+.....+.
T Consensus 212 ~v~~~l~~t~l~~~----g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~ 286 (394)
T COG2814 212 GVLLGLLATFLFMT----GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLL 286 (394)
T ss_pred hHHHHHHHHHHHHc----chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHH
Confidence 76665554444433 333444444444444 4544 45788888999999999999999999 8888888777777
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc-cccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
++..+.+.+. ...........+..++..... .......++ .-++.++.+.+++....|+|..+|..+.|
T Consensus 287 a~~~l~l~~~---------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG 356 (394)
T COG2814 287 ALALLALTFT---------GASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGG 356 (394)
T ss_pred HHHHHHHHHh---------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776662 222233333333333333332 222233344 23567999999999999999999999999
Q ss_pred HHHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 479 DLVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.++|+.|+....++.+.+.+++.++.+...+
T Consensus 357 ~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 357 LVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888887776654433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=291.68 Aligned_cols=396 Identities=17% Similarity=0.135 Sum_probs=298.9
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.++++++.+.+++...++.+..++.+.|.+.+|.++ |..|.|++.+++.++|.++.++.|.++||.++|+.+.+|+++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l--sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL--SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 467789999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhc--CCCCCCcc
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG--IPAEDDPH 241 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~ 241 (532)
.++.+++++++++++.+.++-+++|+.+|..+|.+...+..|++++|||+..++++...++|..+.|++. +++..+.+
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 77777777
Q ss_pred hhHHHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCC-----Ccchh
Q 009536 242 WWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSD-----LDSQW 315 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 315 (532)
||..|++.++++++..+.. +..+|+|+..- ....++..++..+..+++++. ...-.
T Consensus 184 -w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-----------------LP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~ 245 (448)
T COG2271 184 -WRAAFYFPGIIAIIVALILLFLLRDRPQSEG-----------------LPPIEEYRGDPLEIYEEEKENEGLTAWQIFV 245 (448)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhCCCccccC-----------------CCCHHHhhcCchhhhhhhccCCCccHHHHHH
Confidence 9999999999988765554 55677774211 111111111111110111111 11223
Q ss_pred hhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CC--ChhHHHHHHHHHHHHHHhhhhHhhhhhc--CCch
Q 009536 316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GI--TDGALASLLVGVTNFAGALCASYLMDKE--GRQK 390 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~ 390 (532)
+-++++|..|...+ ..+..+..-..+..+.|.|+.+. +. .++.+....+-+++++|.++.||++||+ |||.
T Consensus 246 ~YVL~Nk~iW~la~----a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~ 321 (448)
T COG2271 246 KYVLKNKLIWLLAL----ANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG 321 (448)
T ss_pred HHHHcChHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc
Confidence 44566665444443 33334445566677777777654 33 3668888889999999999999999996 5665
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHH-H
Q 009536 391 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-C 469 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g 469 (532)
...+.+.+.....++..+. . + ..+.......++..+++-.|..-+......|..|++..|++.|+...+.++ |
T Consensus 322 p~~~i~~~~i~~~~~~~w~--~---~-~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~G 395 (448)
T COG2271 322 PMALIFMLLITASLVLYWL--A---P-NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIG 395 (448)
T ss_pred hHHHHHHHHHHHHHHHHHc--C---C-CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhh
Confidence 5443333333222222221 1 1 112223333333333333444445556778999999999999999999999 8
Q ss_pred HHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 470 NFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 470 ~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.+.+....|.+.|.+||...|+++.+.++++.++.....+
T Consensus 396 a~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 396 AALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999988888887776655544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=316.91 Aligned_cols=389 Identities=23% Similarity=0.286 Sum_probs=291.3
Q ss_pred chhHHHHHhhCCCCC---hhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHH
Q 009536 108 GPIVSIAKELGFEGN---PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~---~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r 184 (532)
+..+.+.+|+++ + ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.++++|
T Consensus 110 ~~~~~i~~e~~l--~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDL--VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecc--eechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 567889999999 6 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009536 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 185 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999876643 9999999999888887777889
Q ss_pred ccChhHHhhcCChhHHHHHHHHHcCCcchH--HHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcch
Q 009536 265 VESPRWLCKGGMLNDAKAVIANLWGESEIN--KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGI 342 (532)
Q Consensus 265 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (532)
||+|+|+..+++.+++.+.+++..+.+... .+........+...+..+..++++++++..+...+.....++.....+
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877766554322111 111111101111111123467788888877666555444333222222
Q ss_pred hhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhH
Q 009536 343 NGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 422 (532)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (532)
. ..+.+..+.+.+ ........++..+++.++.+++.||+|||+.+.++.++.+++++++.+... ....
T Consensus 344 ~----~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 411 (505)
T TIGR00898 344 Y----GLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-------DLYF 411 (505)
T ss_pred H----HHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-------CchH
Confidence 2 222222233332 345555677888899999999999999999999888888877776665321 1112
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHH
Q 009536 423 SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 502 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 502 (532)
......++..+...+..+..+.+.+|.+|++.|+++.|+.+....+|++++|.+.+ + +..++..++.+++++.+++.+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 412 LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHH
Confidence 22222222222222334566788899999999999999999999999999999998 4 445666777777777777666
Q ss_pred hhheeeccCCCCCHH
Q 009536 503 FAYYFIVETKGRSLE 517 (532)
Q Consensus 503 ~~~~~~~~~~~~~~~ 517 (532)
+. +++||+++++.+
T Consensus 490 ~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 490 LT-LFLPETKGVPLP 503 (505)
T ss_pred HH-HcCcCCCCCCCC
Confidence 55 467888876543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=306.31 Aligned_cols=397 Identities=16% Similarity=0.156 Sum_probs=267.0
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhH--HHH--HHHHHHHHHHHHHHhhhccccccchhHHHHHhh
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPIL--EGL--VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~ 161 (532)
++.+....++.++++++...++...|.+.++++.+.++.. .+. +.++.++++.++++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4467777889999999999999999999999975333321 222 257788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcHHH--------HHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhc
Q 009536 162 IPLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233 (532)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 233 (532)
++++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 889999999999999999999999999999999999999988888888887554
Q ss_pred CCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 009536 234 IPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK 305 (532)
Q Consensus 234 ~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (532)
..+. ...+ ||+.|++.++++++..++..++||+|+|...+++.++.. .+
T Consensus 175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------------------~~ 231 (490)
T PRK10642 175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------------------RE 231 (490)
T ss_pred HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------------------cc
Confidence 3321 2355 999999988777666666667889987653221110000 00
Q ss_pred hccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCCh--hHHHHHHHHHHHHHHhhhhHhh
Q 009536 306 KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITD--GALASLLVGVTNFAGALCASYL 382 (532)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l 382 (532)
...+..+.++++++++. .+...... ...+.....++....+.|.++++ .+.+. .........++.+++.++.|++
T Consensus 232 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 309 (490)
T PRK10642 232 GLQDGPKVSFKEIATKH-WRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLL 309 (490)
T ss_pred cccccccCCHHHHHHHh-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122345555532 22222222 22222233444556677777754 45543 3455556677888899999999
Q ss_pred hhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHH
Q 009536 383 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS 462 (532)
Q Consensus 383 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 462 (532)
+||+|||+.+..+..+..+....+..... ...........++...+.+. .......+..|.+|++.|+++.|+.
T Consensus 310 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~-~~g~~~~~~~~~~p~~~Rg~~~g~~ 383 (490)
T PRK10642 310 SDRFGRRPFVILGSVALFVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNC-FTGVMASTLPAMFPTHIRYSALAAA 383 (490)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCccchHHHHHH
Confidence 99999999887766543333222111110 00111111111222222221 1223445667899999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHHhhheeeccCCCC
Q 009536 463 FSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIVETKGR 514 (532)
Q Consensus 463 ~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (532)
+.+..+++.++|.+.+.+.+..+ +...+++..+.++++.+.. ++.||++++
T Consensus 384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~ 435 (490)
T PRK10642 384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence 77778888999999999988765 4444544444444444443 345665443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=293.26 Aligned_cols=370 Identities=17% Similarity=0.157 Sum_probs=270.5
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
++|..++.+.++.+..........+.+|.+.+|+|. ++.+.|++.+++.+++.++++++|+++||+|||+++..+.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHM--QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 345556666666666555555666778999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
.+++++++++++|+++++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+..+ |
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w 162 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-W 162 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888777 9
Q ss_pred HHHHHhhHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 244 RTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
|+.|++.++++++..+..+ ++||+|+. + +......++.++++
T Consensus 163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~--------------------------------~~~~~~~~~~~~~~ 205 (390)
T PRK03545 163 RTTFLAIGGGALITLLLLIKLLPLLPSE-----H--------------------------------SGSLKSLPLLFRRP 205 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C--------------------------------cchHHHHHHHHhCc
Confidence 9999998888776654433 34543310 0 00011234566666
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
..+..+....+..... .....+.+.++++ .+.+ ..+.......++.+++.++.+++.||+++|... .+..+.
T Consensus 206 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~ 280 (390)
T PRK03545 206 ALVSLYLLTVVVVTAH----FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALL 280 (390)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHH
Confidence 5544333322222211 1122333444443 3443 456777778889999999999999999987654 344433
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
.++...+... ..+. .......+..+.+ .+..+.....+.+..| +.+++++|+.+...++|..+||.+.|
T Consensus 281 ~~~~~~l~~~--------~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 281 LVCLLLLLPA--------ANSE-WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred HHHHHHHHHH--------hchH-HHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333221 1111 2222222222222 2233444556667666 57899999999999999999999999
Q ss_pred HHHHhhCcchhhHhHHHHHHHHHHhhheee
Q 009536 479 DLVETFGVAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
.+.|..|++..|.+.+.+.+++.++.+...
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 351 QVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999988888888777665544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=295.41 Aligned_cols=373 Identities=15% Similarity=0.176 Sum_probs=273.6
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+++.+....++.+.++++.....+..|.+.+++|+ ++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL--TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 345567788888888999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+ |
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w 171 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-W 171 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888887777 9
Q ss_pred HHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCc
Q 009536 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (532)
|+.|++..+..++........||++++..++.+. ..+. .+...+.....++++++++.
T Consensus 172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKH----------SQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccc----------cccchhhhhHHHHHHHhhch
Confidence 9999986544433333222344443321110000 0000 00000001124566777666
Q ss_pred chHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHH
Q 009536 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAI 401 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 401 (532)
.+......... +..+........+.|.++++.+.+ ..+.......++.+++.++.|++.||++||+.+..+.++.++
T Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~ 308 (426)
T PRK12307 230 FPLTLCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL 308 (426)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55443322222 222222333455677777777665 335566677888999999999999999999988877766665
Q ss_pred HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 402 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
..+.+.... ..........++..++ ..+..+....++.|.+|++.||++.|+.+...++++.++|.+.|.+
T Consensus 309 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 309 FIFPLFRIP--------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHHHHc--------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 554443311 1111222222222222 2233344556778999999999999999999999999999999999
Q ss_pred HHhhCcchhh
Q 009536 481 VETFGVAPVY 490 (532)
Q Consensus 481 ~~~~g~~~~~ 490 (532)
.+..|+....
T Consensus 381 ~~~~g~~~~~ 390 (426)
T PRK12307 381 GITMGLGAAL 390 (426)
T ss_pred HHcccHHHHH
Confidence 9998865543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.36 Aligned_cols=376 Identities=13% Similarity=0.111 Sum_probs=271.0
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 165 (532)
|.....++++.+..... ...++.+|.+++|+|+ +..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 33344444444433332 6778999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009536 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (532)
Q Consensus 166 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~ 245 (532)
++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++..+||+
T Consensus 86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999997 7799999999999999999999998888776533999
Q ss_pred HHHhhHHHHHHHHHHhcccc-cChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcc
Q 009536 246 MLYIASLPGFILALGMQFTV-ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (532)
Q Consensus 246 ~f~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (532)
.+.+.++..++.++..++.. +.|+ + ++++ +....+.++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------------------------~~~~--~~~~~~~l~~~~~ 207 (393)
T PRK09705 165 TLAWWALPAVVALFAWWWQSAREVA-----S------------------------------SHKT--TTTPVRVVFTPRA 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc-----c------------------------------ccCC--CcCCcccccCHhH
Confidence 88776665554433332222 2111 0 0000 0111223344433
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
+...+ ..+.....+.....+.|.++++.+.+ +.+.......++.++++++.+++.||+++|+....+..+..++
T Consensus 208 ~~l~~----~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 208 WTLGV----YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 32222 22222234445666777777777665 4577788889999999999999999999999888877776666
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccccccccc-CccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 403 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS-SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
..++.... .... . ....+...+.+ +..+.......+.. |++.+++..|+.+...+++..++|.+.|++.
T Consensus 284 ~~~~~~~~-------~~~~-~-~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 284 FCGFIWLP-------LQLP-V-LWAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHcc-------chHH-H-HHHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544311 1111 1 11222222222 22343444444555 4678999999999999999999999999999
Q ss_pred HhhC-cchhhHhHHHHHHHHHHhhheeeccCCCCCH
Q 009536 482 ETFG-VAPVYAGFGGVSLLSALFAYYFIVETKGRSL 516 (532)
Q Consensus 482 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (532)
|..| +...|.+.++++++..+..+.+.+|++++.+
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 9987 6667777777777776666777787776543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=298.22 Aligned_cols=400 Identities=16% Similarity=0.146 Sum_probs=278.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
++.......++.++..++...++..+|.+.+++|+ +..+.|++.+.+.+++.+++++.|+++||+|||+++.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGL--SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 44556667777788888888889999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+.+..+ ||
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~ 177 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR 177 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777 99
Q ss_pred HHHHhhHHHHHHHH-HHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchh-hhhhcCC
Q 009536 245 TMLYIASLPGFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW-SELLEEP 322 (532)
Q Consensus 245 ~~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 322 (532)
+.|++.+++.++.. +..++++|+|++...+...+... +. ++.....+..+.+.+..+ ...++++
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------DA----LELAQQQEGAGLSRKEILTKYVLLNP 243 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------cc----cccchhccccCCChhhhHHHHHhcCh
Confidence 99999887766543 34445677664321110000000 00 000000000000000111 1133444
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc--CCchhh-hhhH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKE--GRQKLL-IGSY 396 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~ 396 (532)
..+..... .+........+..+.|.++. +.+.+ +++.......++.++++++.|++.||+ ++|+.. ....
T Consensus 244 ~~~~~~~~----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~ 319 (434)
T PRK11663 244 YIWLLSFS----YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFA 319 (434)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHH
Confidence 43332222 22222334455567777774 34554 456677778899999999999999998 333332 2222
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCccccchhHHHHHHHHHHHHHHHHH
Q 009536 397 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 475 (532)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 475 (532)
....+....+.... ..+...... .++..++ ..+..........|.+|++.++++.|+.++..++|.+++|.
T Consensus 320 ~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~ 391 (434)
T PRK11663 320 AGILLSVGSLWLMP-------FASYVMQAA-CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGY 391 (434)
T ss_pred HHHHHHHHHHHHcc-------cccHHHHHH-HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcc
Confidence 22222222222111 011111111 2222222 22222223355678899999999999999999999999999
Q ss_pred HHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 476 FFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 476 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
+.|.+.|..|+...|.+.+++.+++++..+...+++++
T Consensus 392 ~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 392 PLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred cHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 99999999999999998888888877666555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=291.09 Aligned_cols=390 Identities=15% Similarity=0.113 Sum_probs=273.7
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+|..+.++++..++++++...++...|.+.+|+|+ +..+.|++.+++.+++.+++++.|+++||+|||+++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL--SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence 357788888889999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC-----
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED----- 238 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----- 238 (532)
++++.+++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred -CcchhHHHHHhhHHHHHHHHH-HhcccccChhH---HhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcc
Q 009536 239 -DPHWWRTMLYIASLPGFILAL-GMQFTVESPRW---LCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDS 313 (532)
Q Consensus 239 -~~~~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (532)
..+ ||+.|++.++++++..+ ..++++|+|+. +.++ +.+...+........ .++.+...++.....+.
T Consensus 163 ~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 234 (412)
T TIGR02332 163 ALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDNDQLT---LEQPEGAFAHAAMPQRS 234 (412)
T ss_pred Cccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhcccc---ccccccccccccccHHH
Confidence 245 99999998888776544 44567787742 1111 111000000000000 00000000000000011
Q ss_pred hhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc--CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCc
Q 009536 314 QWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV--GIT--DGALASLLVGVTNFAGALCASYLMDKEGRQ 389 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 389 (532)
.+++++ ++. ++...+..+........+..+.|.++++. +.+ +++.......++.+++.++.|+++||+++|
T Consensus 235 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r 309 (412)
T TIGR02332 235 MLREIF-TPA----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER 309 (412)
T ss_pred HHHHhc-ChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence 233333 222 22223333334445666777888888874 333 446677788899999999999999999977
Q ss_pred hh-hhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHH
Q 009536 390 KL-LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV 468 (532)
Q Consensus 390 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 468 (532)
+. ......+..++..+... . ...........+...+. ....+.......|.+|++.|+++.|+.+...++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~ 380 (412)
T TIGR02332 310 KHHTALPYLFAAAGWLLASA---T-----DHNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNI 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHh---c-----CCHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhh
Confidence 74 33333333333222111 0 11111111111111111 111233345556788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhC-cchhhHhHHHHH
Q 009536 469 CNFLVGLFFLDLVETFG-VAPVYAGFGGVS 497 (532)
Q Consensus 469 g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~ 497 (532)
|++++|.+.|.+.|..| |...+.+.+++.
T Consensus 381 g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 381 GSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 99999999999999876 888777655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=301.43 Aligned_cols=395 Identities=14% Similarity=0.094 Sum_probs=273.4
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
.+.++.+++++++...+++..+++..|.+.+|+|+ +..+.|++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 45567777888888889999999999999999999 8999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHh-----hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 165 ILGAIISAQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 165 ~~~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
+++.++.++ ++|++.++++|+++|++.+...+...+++.||+|+++|+++++++..+.++|.++++++..++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 877776665 589999999999999999999999999999999999999999999999999999999887655443
Q ss_pred c--chhHHHHHhhHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcch-h
Q 009536 240 P--HWWRTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ-W 315 (532)
Q Consensus 240 ~--~~wr~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (532)
. ++||..|.+.++++++..+..+ +.+++|+...... + ++. . .+.. .. ++ ...++++...... .
T Consensus 185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~---~-~~~---~-~~~~-~~--~~--~~~~~~~~~~~~~~~ 251 (467)
T PRK09556 185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK---A-EEI---F-GEPI-SE--ED--KETESTDMTKWQIFV 251 (467)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC---h-hhc---c-cCcc-ch--hh--hccccccCcHHHHHH
Confidence 2 2399999888887776554444 3455554211100 0 000 0 0000 00 00 0000000000011 1
Q ss_pred hhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhh
Q 009536 316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLL 392 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 392 (532)
+..++++..+...+ ..+...........+.|.++++ .+.+ +++.......++.+++.++.|+++||+++|+..
T Consensus 252 ~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~ 327 (467)
T PRK09556 252 EYVLKNPVIWLLCF----ANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL 327 (467)
T ss_pred HHHHcChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 22455555443332 2222233344566778877754 5655 456677777888999999999999999998876
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCccccchhHHHHHHHHHH-HH
Q 009536 393 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CN 470 (532)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~ 470 (532)
.....+..++..++.... .... .......+..++ ..+..........|.+|++.+|++.|+.+...++ |.
T Consensus 328 ~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~ 399 (467)
T PRK09556 328 VACIALALIIFTLGVYQH-------ATSE-YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGD 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHh-------cCcH-HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhH
Confidence 654443333322222210 1111 122222222222 2222222234566999999999999999999997 77
Q ss_pred HHHHHHHHHHHH------------hhCcchhhHhHHHHHHHHHHhhhe
Q 009536 471 FLVGLFFLDLVE------------TFGVAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 471 ~i~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 506 (532)
+++|.+.|.+.| ..||...|.+..++.+++.+..++
T Consensus 400 ~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 400 SFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 567899998887777776655543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=257.07 Aligned_cols=415 Identities=18% Similarity=0.224 Sum_probs=314.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
.|........+.....+.....+-+.|.+.+.+|. +..+..++......+..+++..||.++|++|||+.+.+..+..
T Consensus 76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 34456666666666666666677778888899997 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
++..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.+....+........| ||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr 230 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WR 230 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HH
Confidence 99999999999999999999999999998 898888999999999999887777 8999999999999988888888 99
Q ss_pred HHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchH-----------HHHHHH----HHHHHhccC
Q 009536 245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN-----------KAIEEF----QLVIKKDGS 309 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~~~ 309 (532)
|.......+..+.++..++++|+||++..+|+.+++.+.++++...+..+ ++.++. ...+.+..+
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k 310 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAK 310 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccc
Confidence 99999998888889999999999999999999999998888876544321 011111 111111222
Q ss_pred CCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcC--------------------CC--hhHHHHHH
Q 009536 310 DLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG--------------------IT--DGALASLL 367 (532)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~ 367 (532)
+.......++..+..+..++.... ++.+-..+++........++... .. ....-.++
T Consensus 311 e~rg~~~nLlsp~lrkttlllw~i-wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli 389 (528)
T KOG0253|consen 311 EVRGGTTNLLSPKLRKTTLLLWRI-WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI 389 (528)
T ss_pred ccccchHhhcChHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence 333444555544443444333333 33333333333333333332110 01 12344566
Q ss_pred HHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccc
Q 009536 368 VGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIP 447 (532)
Q Consensus 368 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (532)
..+..+.|.++.++++||+|||+.+...++++++..+++.... . ........+..-.+..+...+.+.|..
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--------~-rn~~tvllf~arafisg~fqvaYvYtP 460 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--------T-RNAYTVLLFTARAFISGAFQVAYVYTP 460 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--------C-cchhHHHHHHHHHHHhchheEEEEecC
Confidence 7889999999999999999999999999998888877776632 1 222333333344444455567899999
Q ss_pred cccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCH
Q 009536 448 ELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSL 516 (532)
Q Consensus 448 ~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (532)
|++|+..|+++.|....++.+|+++.|.++ +........+..+++++++++.+...++--|+|+|..
T Consensus 461 EVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 461 EVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred cccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999999999998 4444455666778888888888888777778888753
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=288.27 Aligned_cols=379 Identities=20% Similarity=0.254 Sum_probs=279.2
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
+++|..+.+.++..++++++....++..|.+.+++|. ++.+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3677788888889999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch
Q 009536 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (532)
Q Consensus 163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 242 (532)
+.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~- 167 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA- 167 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred hHHHHHhhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcC
Q 009536 243 WRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (532)
Q Consensus 243 wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
||+.|++.++..++..+ ...++||+|++..++.+.++. ....+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 216 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------------------------APVLRALFGE 216 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------------------------hhhHHHHhhh
Confidence 99999988776555443 344567776532221110000 0001111111
Q ss_pred CcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
+..+..... ....+...........+.|.++++.+.+ +.+.......++.+++.++.|++.||+++|+.+..+....
T Consensus 217 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (406)
T PRK11551 217 GRATATLLL-WISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGI 295 (406)
T ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111111111 1111111223334455677777777654 4567777788899999999999999999999887766655
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 479 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 479 (532)
+++.+++... ..........++......+..+....+..|.+|++.|+++.|+.+...++|..++|.+.|.
T Consensus 296 ~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 366 (406)
T PRK11551 296 LASLAALAAA---------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366 (406)
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence 5555444331 1112222222222222233445667788899999999999999999999999999999999
Q ss_pred HHHhhC-cchhhHhHHHHHHHHHHhhh
Q 009536 480 LVETFG-VAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 480 l~~~~g-~~~~~~~~~~~~~~~~~~~~ 505 (532)
+.+..+ +...+.....+.+++.++.+
T Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 367 LLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 998755 33444444444444444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=286.08 Aligned_cols=379 Identities=15% Similarity=0.121 Sum_probs=250.8
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCC-CChhHHHHHHHHH---HHHHHHHHHhhhccccccchhHHHHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIF---IAGAFVGSISSGSLADKLGCRRTFQI 159 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~---~l~~~~~~~~~G~l~dr~Grr~~l~~ 159 (532)
+++..+...+++.+++.++...++...|.+.++++.+ .+..+.+...+++ +++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3555677777889999999999999999999998631 1444444444444 45555999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcHH--------HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHH
Q 009536 160 DTIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF 231 (532)
Q Consensus 160 ~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 231 (532)
++++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|+++.++.+.+...|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 58899999999999999999999999999999999999998888888888876
Q ss_pred hcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHH
Q 009536 232 LGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303 (532)
Q Consensus 232 ~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (532)
+...+. ...+ ||+.|++.++++++........+|+|++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------ 227 (432)
T PRK10406 179 VVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------ 227 (432)
T ss_pred HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHHh------------------------------
Confidence 654332 1345 9999999888877766555556666532000
Q ss_pred HHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhH
Q 009536 304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCAS 380 (532)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g 380 (532)
.++ ...++++++++++.+...+. ..+......+....+.|.++++ .+.+ +.+.......++..++.++.|
T Consensus 228 ~~~----~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G 300 (432)
T PRK10406 228 ALK----EAGSLKGLWRNRRAFIMVLG---FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG 300 (432)
T ss_pred hhc----ccccHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01235566665433322221 1121122334455677777654 4555 334555566667778888899
Q ss_pred hhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHH
Q 009536 381 YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG 460 (532)
Q Consensus 381 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 460 (532)
+++||++||+.+.....+.++....+...... ......................+....+.+|.+|++.|+++.|
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g 375 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQN-----VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVG 375 (432)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhh
Confidence 99999999988766555433332222111100 0111111111111111111112345567889999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHHhhhe
Q 009536 461 FSFSVHWV-CNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 461 ~~~~~~~~-g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 506 (532)
+.+...++ .+...|.+.+ +.+..| +...++..+++.+++.+..++
T Consensus 376 ~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 376 LSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99988765 3445777777 445556 444455555555555544443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=338.85 Aligned_cols=431 Identities=34% Similarity=0.575 Sum_probs=331.6
Q ss_pred HHHHhhhhhhccccccchhHHHH--HhhCCCC-------ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIA--KELGFEG-------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
..++.+..+++...++...+... .++..+. +..+.+++.+...+|..+|+++.|.++||+|||+.+.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34556788888887777766554 2333321 12357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 163 PLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 163 ~~~~~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
+..++.++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998887655332
Q ss_pred cc--hhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhh
Q 009536 240 PH--WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317 (532)
Q Consensus 240 ~~--~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (532)
.+ .||+.+++.++++++..+...++||+|+|+..+++.+++++.+++.++.+..+++.++...+.++.++ .+..+++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 243 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQE-SKASWRD 243 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccc-cceeeee
Confidence 21 39999999999998888888999999999999999999999998866554333333222222221111 1256777
Q ss_pred hhcCCc-chHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhH
Q 009536 318 LLEEPH-SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSY 396 (532)
Q Consensus 318 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 396 (532)
+++++. .++.+....+..+..+.+.....+|.+.++++.+.++.........+..+++.+++.++.||+|||++++.+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777755 3444444445555555566667778888877777665544555666777788888889999999999999888
Q ss_pred HHHHHHHHHHH-HHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHH
Q 009536 397 LGMAISMLLVV-GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 475 (532)
Q Consensus 397 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 475 (532)
.+++++.+.+. ........+.......+....+....+..+..+..+.+..|.+|++.|+++.|+......+++++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~ 403 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPF 403 (451)
T ss_pred ccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88877776664 11110100001122333334444455666777888899999999999999999999999999999999
Q ss_pred HHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHHHHh
Q 009536 476 FFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSL 523 (532)
Q Consensus 476 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (532)
+...+.+..+....+.++++++++..++.++++||+|+++.+|+++++
T Consensus 404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999888887766778888888888888888999999999999998753
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=284.46 Aligned_cols=388 Identities=16% Similarity=0.183 Sum_probs=274.6
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
+.+|+.+..+.++.+.+.++....+++.|.+.+++|+ +..+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL--TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4567778889999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc-
Q 009536 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH- 241 (532)
Q Consensus 163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~- 241 (532)
+.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888765432
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcC
Q 009536 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
+||+.|++.++..++..+....+||++++...+++.+...+..++..+.... .+...+......+. +.
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~~ 233 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR----------IANIVMTLAAAMVQ--SA 233 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh----------hhhhhhhhhHHhhh--hh
Confidence 3999999877776666666666787765433222111111111111000000 00000000000011 01
Q ss_pred CcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH
Q 009536 322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 398 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 398 (532)
...+..+...................+.|.++. +.+.+ +.+.......++.+++.++.+++.||++||+.+..+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 313 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA 313 (405)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence 111111111111111111122233344555554 34554 456677778899999999999999999999988777665
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 399 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
..+....+... ......+....++......+..+....++.|.+|++.|+++.|+.+.+.++|..++|.+.|
T Consensus 314 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g 385 (405)
T TIGR00891 314 GQLLIIPVFAI--------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385 (405)
T ss_pred HHHHHHHHHHh--------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 43333222221 1112222222222333334445556678889999999999999999999999999999999
Q ss_pred HHHHhhC-cchhhHh
Q 009536 479 DLVETFG-VAPVYAG 492 (532)
Q Consensus 479 ~l~~~~g-~~~~~~~ 492 (532)
.+.|..| |...+..
T Consensus 386 ~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 386 LLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHhccccchhHHh
Confidence 9999998 7655543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=278.83 Aligned_cols=352 Identities=13% Similarity=0.051 Sum_probs=244.8
Q ss_pred hccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHH
Q 009536 101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (532)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 180 (532)
.....+++.+|.+.+|+|+ +..+.|++.+++.+++.+++++.|+++||+|||+++..+......+.+....++|++++
T Consensus 5 ~~~~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDV--SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHHHHhhHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3445678899999999999 89999999999999999999999999999999988776655555544333334799999
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHH-
Q 009536 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL- 259 (532)
Q Consensus 181 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~- 259 (532)
+++|+++|++.+. .......++|++|+++|++++++.+.+..+|.++++++++++.+..+ ||+.|++.++++++..+
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence 9999999999986 55666677999999999999999999999999999999999988877 99999998887766544
Q ss_pred HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhh
Q 009536 260 GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQF 339 (532)
Q Consensus 260 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
..+++||+|++.. +. .+.+ + . ..+++++++++..+...+.. +...
T Consensus 161 ~~~~lp~~p~~~~---~~-------------~~~~----~---~--------~~~~~~ll~~~~~~~~~~~~----~~~~ 205 (368)
T TIGR00903 161 VLAALPALPFQAA---EG-------------FGFK----D---A--------VKEFGALAGRKDLWIIGAIL----GFGV 205 (368)
T ss_pred HHHHcCCCCCCCC---CC-------------cchH----H---H--------HHHHHHHHcChhHHHHHHHH----HHHH
Confidence 4456788775310 00 0000 0 0 01355677777655444333 3333
Q ss_pred cchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCc---hhhhh-hHHHHHHHHHHHHHHhcCCCC
Q 009536 340 AGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQ---KLLIG-SYLGMAISMLLVVGATSLPLD 415 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 415 (532)
.....+..|+|.++++.+.+.. ......+..+.+.+..++++||..|| +.... ...+.++....+..
T Consensus 206 ~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~------- 276 (368)
T TIGR00903 206 ALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF------- 276 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3455666788888887766532 22223333344445567888887654 22222 22222332222222
Q ss_pred ccchhhHHHHHHHHHHHHH-hcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHH
Q 009536 416 EDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFG 494 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~ 494 (532)
..+..... .++...++ ..+..+..+.+.+|.+|++.|+++.|+.+...++++.++|.+.+.+.. |....|.+++
T Consensus 277 --~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~ 351 (368)
T TIGR00903 277 --ELNRLALF-AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLA 351 (368)
T ss_pred --ccccHHHH-HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 01111112 22222222 222335566888999999999999999999999999999999988773 7777888888
Q ss_pred HHHHHHHHhhh
Q 009536 495 GVSLLSALFAY 505 (532)
Q Consensus 495 ~~~~~~~~~~~ 505 (532)
+..+++.+...
T Consensus 352 ~~~~i~~~~~~ 362 (368)
T TIGR00903 352 ILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHH
Confidence 87777766653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=289.41 Aligned_cols=406 Identities=14% Similarity=0.163 Sum_probs=279.0
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+|+.+..++++.++..++....++.+|.+.+++|+ +..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL--TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 455677888888899999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
.+++.+++++++|++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ |
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w 173 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-W 173 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888877 9
Q ss_pred HHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHH-HHH---HHHHhccCCCcchhh---
Q 009536 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE-EFQ---LVIKKDGSDLDSQWS--- 316 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~--- 316 (532)
|+.|++.++..++.++....+||++++..++++.++..+..+.....+....... ... .............+.
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAV 253 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 9999886655555444445567665543222211111111111100000000000 000 000000000000000
Q ss_pred -----------h-hhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHh
Q 009536 317 -----------E-LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASY 381 (532)
Q Consensus 317 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~ 381 (532)
. ....+..+..........+..+........+.|.+++ +.+.+ +.+.......++.+++.++.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~ 333 (496)
T PRK03893 254 LGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGF 333 (496)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000111111111111111112122234556777774 55555 4577778888999999999999
Q ss_pred hhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHH
Q 009536 382 LMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 461 (532)
Q Consensus 382 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 461 (532)
+.||+++|+.+..+..+..+..+.+.... ...........+...+.+.+..+....++.|.+|++.|++++|+
T Consensus 334 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 406 (496)
T PRK03893 334 LGDWLGTRKAYVCSLLISQLLIIPVFAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF 406 (496)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence 99999999988776655554443332210 11112222222222333344445566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHH
Q 009536 462 SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLL 499 (532)
Q Consensus 462 ~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~ 499 (532)
.+....+|+.++|.+.|.+.|..|+...+...+++..+
T Consensus 407 ~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 407 TYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999988777655544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=281.90 Aligned_cols=367 Identities=20% Similarity=0.201 Sum_probs=268.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.++.+..+++..++..++..+..+.+|. +.+++|. +..+.|++.+++.+++.+++++.|+++||+|||++++.+.++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~ 90 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCG 90 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHH
Confidence 3344677788888888899999999986 6788999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh--------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCC
Q 009536 164 LILGAIISAQA--------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (532)
Q Consensus 164 ~~~~~~~~~~a--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 235 (532)
++++.+.+.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++|+.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~ 170 (399)
T PRK05122 91 CALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVL 170 (399)
T ss_pred HHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHH
Confidence 98887766553 2567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchh
Q 009536 236 AEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315 (532)
Q Consensus 236 l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (532)
+.+..+ ||+.+++.++..++..+.....+++++ .++ .+.++
T Consensus 171 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------------------------------~~~~~ 211 (399)
T PRK05122 171 LYHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP---VKG-----------------------------------ERLPF 211 (399)
T ss_pred HHHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC---CCc-----------------------------------cchhH
Confidence 888888 999988877666554443332332211 000 00011
Q ss_pred hhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhh
Q 009536 316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGS 395 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 395 (532)
++.+++ .+.......+. .........+.+.++.+.+..+.+.......++.+++.++.|++.||+++|+.+..+
T Consensus 212 ~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~ 285 (399)
T PRK05122 212 RRVLGR--VWPYGMGLALA----SIGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVS 285 (399)
T ss_pred HHHHHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 111111 01111111111 112223344555566666655556666777888899999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHH
Q 009536 396 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 475 (532)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 475 (532)
..+.+++..++... .+.+..+....+...+.+ ...+.......|..|+++|+++.|+.+...++|..+++.
T Consensus 286 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 286 LLVEILGLLLLWLA--------PSPWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred HHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776655541 111222222222222222 223444455668889999999999999999999999999
Q ss_pred HHHHHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 476 FFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 476 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
+.|.+.+..|++..+.+.+++.+++.++.+++
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 357 LAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988888777776655443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=283.24 Aligned_cols=354 Identities=18% Similarity=0.113 Sum_probs=261.0
Q ss_pred ccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHH
Q 009536 102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML 181 (532)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~ 181 (532)
.....++..|.+.+++|+ +..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++|++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY 95 (377)
T ss_pred HHhhhhhHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009536 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 182 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
++|++.|++.+..++.....+.+++| ++|+++.++...+.++|..+++.+.+.+.+..+ ||+.|++.+++.++..+..
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888999997 569999999999999998876666666666666 9999999888887766555
Q ss_pred cc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhc
Q 009536 262 QF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFA 340 (532)
Q Consensus 262 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (532)
++ ++++|+. ..+.+ ++.+......++.++++..+..........+
T Consensus 174 ~~~~~~~~~~-~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 219 (377)
T TIGR00890 174 AFLIGYPPGQ-LIKTN-----------------------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAV---- 219 (377)
T ss_pred HHheecCchh-ccccC-----------------------------cccchhhhhHHHHHcCccHHHHHHHHHHHhH----
Confidence 44 3333220 00000 0000001123455566655443332222211
Q ss_pred chhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
.......+.+.+.++.+.+. .+.......++.++++++.|++.||++||+.+..+..+.+++.+++.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------- 292 (377)
T TIGR00890 220 SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM------- 292 (377)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc-------
Confidence 12222233444556666553 456677788899999999999999999999988888777777666554211
Q ss_pred hhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHH
Q 009536 419 SHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
. ............+...+ ..+....+..|.+|+++|+++.|+.+...++|..++|.+.|.+.+..||+..|.+.+++.
T Consensus 293 ~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 293 L-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred c-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 1 11111111122222222 234455678899999999999999999999999999999999999999999888877766
Q ss_pred HHHH
Q 009536 498 LLSA 501 (532)
Q Consensus 498 ~~~~ 501 (532)
+++.
T Consensus 372 ~~~~ 375 (377)
T TIGR00890 372 LTSL 375 (377)
T ss_pred HHhc
Confidence 6543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=275.73 Aligned_cols=362 Identities=15% Similarity=0.127 Sum_probs=262.4
Q ss_pred HHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
+..+.++.++..+..++..|.+|. +.+|+|. |..+.|++.+++.+++.++++++|+++||+|||++++.+.++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~--s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF--GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 555556667777778888888885 6789999 9999999999999999999999999999999999999998887776
Q ss_pred HHHHHh--------hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 168 AIISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 168 ~~~~~~--------a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
.+.+.. .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 553322 357899999999999999999999999999999999999999999999999999999999988887
Q ss_pred cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhh
Q 009536 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL 319 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
.+ ||+.+.+..+..++........+|.++. + + .+.+.++..
T Consensus 175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------------------~---~~~~~~~~~ 215 (392)
T PRK12382 175 FG-FAALALTTMVLPLLAWAFNGTVRKVPAH---A--------------------------------G---ERPSLWSVV 215 (392)
T ss_pred cC-hHHHHHHHHHHHHHHHHHHHhccCCCCC---c--------------------------------c---cCchHHHHH
Confidence 77 9998776655544333322222322110 0 0 000111111
Q ss_pred cCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
+. .+.......+. .........+.+.++++.+.+..+.......++.+++.++.|++.||+++|+.+..+..+.
T Consensus 216 ~~--~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 289 (392)
T PRK12382 216 GL--IWKPGLGLALQ----GVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVE 289 (392)
T ss_pred HH--HHHhHHHHHHH----HHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHH
Confidence 10 00001111111 1122234445566666666666666666677888899999999999999999988888777
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
+++.+++... .+.. .........+.+.+ ..+.......+.+|+++||++.|+.+...++|..++|.+.|
T Consensus 290 ~~~~~~~~~~---------~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 290 TVGLLLLWLA---------PTAW-VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred HHHHHHHHHc---------ccHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655441 1111 12222222233322 23455566778889999999999999999999999999999
Q ss_pred HHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 479 DLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.+.|..||+..|.+.+++.+++.++.+..
T Consensus 360 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 360 MLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888887777665544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=270.38 Aligned_cols=376 Identities=15% Similarity=0.042 Sum_probs=272.6
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHH-hhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.++.+.+..++.++......+.++..+.+.+ |+|+ +..|.+++.+++.+++.++.++.|++.||+|.|+++.++.++
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l--s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF--TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4567888888888888889999999998876 8999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-----hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC-
Q 009536 164 LILGAIISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE- 237 (532)
Q Consensus 164 ~~~~~~~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~- 237 (532)
+++.+++++++ +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~ 188 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF 188 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999987 8999999999999998 7789999999999999999999999997666666655544432211
Q ss_pred -----------------CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHH
Q 009536 238 -----------------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEF 300 (532)
Q Consensus 238 -----------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (532)
+.. +||.++++.+++.++..++.++..++++
T Consensus 189 ~~l~~~~G~~~~~~~~g~~~-~~~~~~~~~~~~~iv~~i~~~~~~~~~~------------------------------- 236 (462)
T PRK15034 189 VPVFAFLGVNGVPQADGSVM-SLANAAWIWVPLLAIATIAAWSGMNDIA------------------------------- 236 (462)
T ss_pred HHHHHHhccccccccccchH-HHHHHHHHHHHHHHHHHHHHHHhCCCcc-------------------------------
Confidence 122 3899988888888777666555544321
Q ss_pred HHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC-hhHHHHHHHHHHHHHHhhhh
Q 009536 301 QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT-DGALASLLVGVTNFAGALCA 379 (532)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 379 (532)
+.+.......+.+|+|..|...+.. +..+..+..+.+++|.+.++.-.. .......+..+...+.++++
T Consensus 237 ------~~~~~~~~~~~vlk~~~~Wllslly----~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplg 306 (462)
T PRK15034 237 ------SSRASIADQLPVLQRLHLWLLSLLY----LATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVG 306 (462)
T ss_pred ------ccccCHHHHHHHhCCCchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhh
Confidence 0011123445677777755544333 344556666677777777653211 22222334467788889999
Q ss_pred HhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc-cccccccccccCc------
Q 009536 380 SYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSN------ 452 (532)
Q Consensus 380 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------ 452 (532)
|+++||+|+++++.++.+.+.++...+.... +.. ...........++..+...|.+ ...+-++.+.+|+
T Consensus 307 G~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~--~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~ 382 (462)
T PRK15034 307 GAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGT--GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRV 382 (462)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--ccc--cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcc
Confidence 9999999999999888877766654433321 111 1112222222233322223332 2345566666664
Q ss_pred ---------------cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHHhhheeec
Q 009536 453 ---------------RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 453 ---------------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
++.|.+.|+....+.+|+++.|.+.|...+..| +...|+++.+..+++.++.++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 383 KMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred cccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 157899999999999999999999999998876 777788888888888877766543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=277.82 Aligned_cols=358 Identities=17% Similarity=0.205 Sum_probs=239.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHH-HHHH-----HHHHHHHHHhhhccccccchhHHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLV-VSIF-----IAGAFVGSISSGSLADKLGCRRTFQ 158 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-----~l~~~~~~~~~G~l~dr~Grr~~l~ 158 (532)
|++....++++.+++.++...++...|.+.+|++. ++.+.+.+ .+.. .++..+++++.|+++||+|||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 90 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFP--AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI 90 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence 45568888899999999999999999999999998 55544433 3322 2233478999999999999999999
Q ss_pred HhhHHHHHHHHHHHhhhcHHH--------HHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHH
Q 009536 159 IDTIPLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL 230 (532)
Q Consensus 159 ~~~~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 230 (532)
.+.+++++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 688999999999999999999999999999999999999888888777777
Q ss_pred HhcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHH
Q 009536 231 FLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQL 302 (532)
Q Consensus 231 ~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (532)
.+++.+. +..+ ||+.|++.++...+........+|++++..+
T Consensus 171 ~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~----------------------------- 220 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLAR----------------------------- 220 (434)
T ss_pred HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh-----------------------------
Confidence 6666542 3456 9999998654432222222222332111000
Q ss_pred HHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhh
Q 009536 303 VIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCA 379 (532)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 379 (532)
+.+.+.+..++...+++ +.........+...........+.|.++++ .+.+ +.++...+..++.+++.++.
T Consensus 221 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (434)
T PRK15075 221 ---KHRPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIG 294 (434)
T ss_pred ---hhccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011122222221 122222222222333455667778888875 4655 44566667788899999999
Q ss_pred HhhhhhcCCchhhhhhHHHHHHHHH-HHHHHhcCCCCccchhhHHHHH-HHHHHHHHhcccccccccccccccCccccch
Q 009536 380 SYLMDKEGRQKLLIGSYLGMAISML-LVVGATSLPLDEDFSHNLSILG-TLFYIFTFAIGAGPVTGLVIPELSSNRTRGK 457 (532)
Q Consensus 380 g~l~d~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (532)
|+++||++||+.+..+..+..+... .+..... ......... ..+...+++ ...+....+..|.+|++.|++
T Consensus 295 g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~ 367 (434)
T PRK15075 295 GALSDRIGRRPVLIAFTVLAILTAYPALSWLVA------APSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTA 367 (434)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc------CCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccch
Confidence 9999999999987765544332221 1111111 011111111 112222222 223344567789999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHhhCcc
Q 009536 458 IMGFSFSVHWV-CNFLVGLFFLDLVETFGVA 487 (532)
Q Consensus 458 ~~g~~~~~~~~-g~~i~~~~~g~l~~~~g~~ 487 (532)
+.|+.+.+... ++.++|.+.|.+.|..|+.
T Consensus 368 ~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 368 GFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred heeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99997665554 5888999999999998854
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=284.06 Aligned_cols=384 Identities=12% Similarity=0.025 Sum_probs=276.9
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
++|..+..++++.++..++.++.+.++|.+.+|+|. +..+.+|+.+.|.++..++++++|+++||+|||++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~--s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~ 80 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA--SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL 80 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 467789999999999999999999999999999998 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcC-CcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 242 (532)
++++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.++.+
T Consensus 81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g- 159 (495)
T PRK14995 81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence 9999999999999999999999999999999998888887776 67899999999999999999999999999999888
Q ss_pred hHHHHHhhHHHHHHHHHH-hcccccChhHHhhcCChhHHHHHH------------HHH-cCCcchHHHHH--------HH
Q 009536 243 WRTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVI------------ANL-WGESEINKAIE--------EF 300 (532)
Q Consensus 243 wr~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~--------~~ 300 (532)
|||.|++...++++.+++ .+++|++++. ++++.+...... ... ........... -.
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG 237 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 999999988777765444 3445655431 111111111100 000 00000000000 00
Q ss_pred HHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhh
Q 009536 301 QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGAL 377 (532)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 377 (532)
.....+.+...+....++++++.+....+..+.. ........++.|.+++.. +.+ +++....+..++..++.+
T Consensus 238 ~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~ 313 (495)
T PRK14995 238 LFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTA----MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP 313 (495)
T ss_pred HHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111122224567776654433322222 223344556777777653 444 668888888999999999
Q ss_pred hhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccc
Q 009536 378 CASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRG 456 (532)
Q Consensus 378 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 456 (532)
+.|++.||+|+|+.+..+..+.+++.+++..... ....+....... ..+++.+. .+.......+..|+++++
T Consensus 314 ~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~--l~G~g~g~~~~~~~~~~~~~~~~~~~g 386 (495)
T PRK14995 314 IAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMA--LLGFSAASALLASTSAIMAAAPPEKAA 386 (495)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHH--HHHHhHHHHHHHHHHHHHhcCCHHhcc
Confidence 9999999999999888887777776665544211 011122222222 23333333 233455666788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 457 KIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 457 ~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
.+.++.++.+++|+.+|+.+.|.+.+.
T Consensus 387 ~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 387 AAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=274.24 Aligned_cols=385 Identities=18% Similarity=0.128 Sum_probs=257.3
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHH-HHHhh--CCCCChhHHHHHH-----HHHHHHHHHHHHhhhccccccchhH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVS-IAKEL--GFEGNPILEGLVV-----SIFIAGAFVGSISSGSLADKLGCRR 155 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~-----s~~~l~~~~~~~~~G~l~dr~Grr~ 155 (532)
++++.+....++.+.+.++...++.+.|. +.+++ +. ++. .+++. ++.+++..+++++.|+++||+|||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~ 95 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQV--SPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence 44566778888999999999998888774 55665 55 444 35553 3455667789999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhhhcHH--------HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHH
Q 009536 156 TFQIDTIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII 227 (532)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 227 (532)
+++.+.++++++++++++++|+. .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 5888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC--------CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHH
Q 009536 228 TSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE 299 (532)
Q Consensus 228 ~g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (532)
++..+...+. ...+ ||+.|++.+++.++........||+|++...+++.+
T Consensus 176 l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~--------------------- 233 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA--------------------- 233 (438)
T ss_pred HHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc---------------------
Confidence 8877655443 2345 999999988876665555555677765432211000
Q ss_pred HHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCChh--HHHHHHHHHHHHHHh
Q 009536 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDG--ALASLLVGVTNFAGA 376 (532)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 376 (532)
+.++.....+.++++++.+.... ...+...........+.+.+++ ..+.+.. .......++..+++.
T Consensus 234 -------~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~ 303 (438)
T PRK09952 234 -------AAKKRIPVIEALLRHPGAFLKII---ALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI 303 (438)
T ss_pred -------cccccCCHHHHHHHchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000111122344443322221 1111112223334445565554 3455433 233444566777888
Q ss_pred hhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccc
Q 009536 377 LCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTR 455 (532)
Q Consensus 377 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 455 (532)
++.|+++||++||+.+..+.++.+++.+.+..... ............+..+++.+ ..+....+..|.+|++.|
T Consensus 304 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r 377 (438)
T PRK09952 304 PCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYR 377 (438)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchh
Confidence 89999999999999888776655444333322110 01111221222222222222 234566788999999999
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHhhC--cchhhHhHHHHHHHHHHhhheeecc
Q 009536 456 GKIMGFSFSVHW-VCNFLVGLFFLDLVETFG--VAPVYAGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 456 ~~~~g~~~~~~~-~g~~i~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (532)
+++.|+.+.... +++.++|.+.+.+.+..+ |...+...+++.+++.+..+ ..++
T Consensus 378 ~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 378 YSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 999999766654 899999999999988653 66666666666666655543 3444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=269.15 Aligned_cols=364 Identities=16% Similarity=0.145 Sum_probs=259.0
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
.|+.+..+.++.+..........+.+|.+.+++|+ ++.+.++..+++.++..+++++.|+++||+|||++++.+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGI--SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 44555555555555555555666678999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+.+..+ ||
T Consensus 96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~ 174 (394)
T PRK10213 96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WR 174 (394)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888 99
Q ss_pred HHHHhhHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCc
Q 009536 245 TMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (532)
+.|++.++++++..+... ..||+|+. +++.....++.+++|.
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~-------------------------------------~~~~~~~~~~~l~~~~ 217 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPGE-------------------------------------PSHQKQNTFRLLQRPG 217 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCcc-------------------------------------cccchhHHHHHhcCHH
Confidence 999998877665544333 34543210 0000112234555555
Q ss_pred chHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHH
Q 009536 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAI 401 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 401 (532)
.+...+...+.... ......+..|.+.++.+.+ ..+......+++.+++.++.+++.||.++ +.+..+..+..+
T Consensus 218 ~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~ 293 (394)
T PRK10213 218 VMAGMIAIFMSFAG---QFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHH
Confidence 54433322222211 1122233346666666655 34677777888999999999999999644 433333333232
Q ss_pred H-HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009536 402 S-MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 479 (532)
Q Consensus 402 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 479 (532)
. +++... . .+.+.... ..+..+++.+. .+...+.+.+..|+ +++...++.....++|..+|+.+.|.
T Consensus 294 ~~~~l~~~-~-------~~~~~~~~--~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~ 362 (394)
T PRK10213 294 SALVLTLW-G-------SDKIVATG--VAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGY 362 (394)
T ss_pred HHHHHHHH-h-------hhHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 232222 0 11222222 22222333333 34444566677764 46788888888889999999999999
Q ss_pred HHHhhCcchhhHhHHHHHHHHHHh
Q 009536 480 LVETFGVAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 480 l~~~~g~~~~~~~~~~~~~~~~~~ 503 (532)
+.|..|+...+...+++.++..+.
T Consensus 363 l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 363 ALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHhccChhhHHHHHHHHHHHHHHH
Confidence 999999888777766655554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=280.39 Aligned_cols=388 Identities=17% Similarity=0.133 Sum_probs=273.6
Q ss_pred hhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh
Q 009536 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH 175 (532)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~ 175 (532)
.+...++...++...|.+.+++|. +..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 345567778888899999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009536 176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (532)
Q Consensus 176 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 255 (532)
|++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.+++.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 159 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGI 159 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888777 9999999888877
Q ss_pred HHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHH
Q 009536 256 ILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALF 334 (532)
Q Consensus 256 ~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (532)
+..+..+ +.+|+|+.... .+.++........ ..+...+++++......++.++++..+...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 223 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGL-----------LAEQQGKGPSTPKKYQIKELLKDRRVWGLALG---- 223 (399)
T ss_pred HHHHHhhheecCCCCcccc-CCHHHHhhcchhh-----------ccccccccccCCCccchHHHhcCHHHHHHHHH----
Confidence 6655544 34554421100 0000000000000 00000011111223344556666544333322
Q ss_pred HHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhh-hHHHHHHHHHHHHHHh
Q 009536 335 LLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIG-SYLGMAISMLLVVGAT 410 (532)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~ 410 (532)
.+...........+.+.++++ .+.+ +.+.......++.+++.++.|++.||+++|+.... ......++.+......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (399)
T TIGR00893 224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM 303 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence 222333444555566666654 3444 44677777888899999999999999999862111 1111111111111100
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchh
Q 009536 411 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPV 489 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~ 489 (532)
... ................+++.+..+....+..|.+|++.|+++.|+.+.+.++|..++|.+.|.+.|..| +...
T Consensus 304 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~ 380 (399)
T TIGR00893 304 FAT---NYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA 380 (399)
T ss_pred HHh---ccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHH
Confidence 000 001112222222333333444567788899999999999999999999999999999999999999988 8888
Q ss_pred hHhHHHHHHHHHHhhh
Q 009536 490 YAGFGGVSLLSALFAY 505 (532)
Q Consensus 490 ~~~~~~~~~~~~~~~~ 505 (532)
+.+.+++.+++.++.+
T Consensus 381 ~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 381 LMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777777665543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=276.58 Aligned_cols=394 Identities=14% Similarity=0.128 Sum_probs=258.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
+|..+...++.......+...++..+|.+.++ |+ +..+.+++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~--s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CC--CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 34445555555666666666677788998888 88 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh----cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHH-HHHHHhcCCCCCC
Q 009536 165 ILGAIISAQAH----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI-ITSLFLGIPAEDD 239 (532)
Q Consensus 165 ~~~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~ 239 (532)
+++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+++++..+...
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 183 (452)
T PRK11273 104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF 183 (452)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999888763 788899999999999999888888899999999999999999999999886 4555543333223
Q ss_pred cchhHHHHHhhHHHHHHH-HHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcch-hhh
Q 009536 240 PHWWRTMLYIASLPGFIL-ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ-WSE 317 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 317 (532)
.+ ||+.|++.+++.++. ++..++++|+|+....+.+ ++.. .+. + ++ ....++++.+.+.. .+.
T Consensus 184 ~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~---~~~------~---~~-~~~~~~~~~~~~~~~~~~ 248 (452)
T PRK11273 184 ND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK---NDY------P---DD-YNEKHEQELTAKQIFMQY 248 (452)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh---hcc------c---cc-cccccCCCccHHHHHHHH
Confidence 35 999999988777664 4445566777653111100 0000 000 0 00 00000000000111 122
Q ss_pred hhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc--CCchhh
Q 009536 318 LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGALCASYLMDKE--GRQKLL 392 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~ 392 (532)
+++++..+...+...+. .........+.|.++++. +.+ .++.......++.+++.++.|+++||+ +||...
T Consensus 249 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~ 324 (452)
T PRK11273 249 VLPNKLLWYIAIANVFV----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 324 (452)
T ss_pred HHcChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchH
Confidence 44555544433332222 223345566788888763 444 456666677888899999999999998 444332
Q ss_pred h-hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCccccchhHHHHHHHHHHHH
Q 009536 393 I-GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN 470 (532)
Q Consensus 393 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 470 (532)
. ....+..++.+++.... ...... ....++..+... +.......+..|.+|++.+|++.|+.+...++|+
T Consensus 325 ~~~~~~l~~~~~~~~~~~~-------~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 396 (452)
T PRK11273 325 GVFFMTLVTIATIVYWLNP-------AGNPTV-DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 396 (452)
T ss_pred HHHHHHHHHHHHHHHHHhc-------ccChHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHH
Confidence 2 11222222222222210 011111 111222222221 2222233456789999999999999999999987
Q ss_pred HH-HHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheee
Q 009536 471 FL-VGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 471 ~i-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
.+ +|.+.|.+.|..||+..|.+.+++++++.+....+.
T Consensus 397 ~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 397 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 65 799999999999999999888887777766554333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=270.21 Aligned_cols=369 Identities=15% Similarity=0.073 Sum_probs=268.7
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+++..+..+++.+..+......++.+|.+.+++|+ +..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL--PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355667777888888888899999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC-Ccch
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPHW 242 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~ 242 (532)
.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g- 160 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE- 160 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 999999999999999999999999999999999999999999999999999999988899999999988877654 445
Q ss_pred hHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 243 WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 243 wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
||+.|++.+++.++..+..++ .+.|+. ++.+. +++++ ..+..+ ++
T Consensus 161 w~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~---------------------------~~~~~----~~~~~~-~~ 205 (394)
T PRK03699 161 WYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP---------------------------KADKP----VAKEKW-GI 205 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc---------------------------cccCc----cccccC-Ch
Confidence 999999888777665544332 222210 00000 00000 000000 11
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
. ++...+..+...........+.|.++++ .+.+ +.+.......++..+++++.++++||+++|+.+.....+.
T Consensus 206 ~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~ 281 (394)
T PRK03699 206 G----VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLA 281 (394)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 1 1222222222223344556678888754 4554 4567777778889999999999999999999887766655
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
.+.+.++... .+...... ..+..++ ..+..+.......+..|. .++...|......++|..++|.+.|
T Consensus 282 ~~~~~~~~~~---------~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G 350 (394)
T PRK03699 282 LVLMYLFVNT---------DDPSHLLY-AILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTS 350 (394)
T ss_pred HHHHHHHHHc---------CCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5544444331 11111222 2222222 222334444555666554 4678889999999999999999999
Q ss_pred HHHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 479 DLVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
.+.+..|++..+++.+++.+++.+.+.
T Consensus 351 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 351 PIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 999999999998888777777655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=268.24 Aligned_cols=368 Identities=12% Similarity=0.112 Sum_probs=261.7
Q ss_pred HHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
.+..+++..+..+.......+.+|.+.+|+|. +..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGI--SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG 81 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCC--CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 35667777888888888999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009536 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (532)
Q Consensus 168 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f 247 (532)
.+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+.+..+ ||+.|
T Consensus 82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f 160 (382)
T PRK10091 82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTF 160 (382)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999999998888777 99999
Q ss_pred HhhHHHHHHHHHH-hcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchH
Q 009536 248 YIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (532)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (532)
++.+++.++..+. ..++||.++ +.+. . .+.. .+.++++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~lp~~~~----~~~~--------------~------------------~~~~-~~~~~~~~~~~ 203 (382)
T PRK10091 161 LLIAVFNIAVLASIYFWVPDIRD----EAKG--------------G------------------LREQ-FHFLRSPAPWL 203 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc----cccc--------------C------------------HHHH-HHHhcChHHHH
Confidence 9988877665443 344565431 0000 0 0000 11233333322
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM 403 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 403 (532)
.+.... + ..........+.+.++. ..+.+ ..+.......++.++++++.+++.||+++|+.+..+..+.+++.
T Consensus 204 ~~~~~~---~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 204 IFAATM---F-GNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHH---H-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHH
Confidence 222111 1 11112222233333443 34554 45677778889999999999999999999999888877777766
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
+++.... ...+..+...++...+......+.......+..+++.++.+ ..+...++|.++||.+.|.+.|.
T Consensus 280 ~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 280 LMLFFFG-------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHH-------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc
Confidence 5543311 11122222222222222211222222334444444444443 44677899999999999999996
Q ss_pred -hCcchhhHhHHHHHHHHHHhhheee
Q 009536 484 -FGVAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 484 -~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
.+|+..+.+.++++++.......+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 351 GLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5788888877666655554443333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=264.35 Aligned_cols=360 Identities=15% Similarity=0.124 Sum_probs=264.4
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 166 (532)
+.++.+.++.++.........+.+|.+.+++|. +..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL--PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777788889999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009536 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (532)
Q Consensus 167 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~ 246 (532)
+.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+... |...
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~ 162 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLP 162 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHH
Confidence 999999999999999999999999999999888888899999999999999999999999999999998876532 3222
Q ss_pred HHhhHHHHHH-HHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcch
Q 009536 247 LYIASLPGFI-LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325 (532)
Q Consensus 247 f~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (532)
+ ..+..... ..+.....+++++ ++ +...+.++.++++..+
T Consensus 163 ~-~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~--~~~~~~~~~~~~~~~~ 203 (381)
T PRK03633 163 W-VTGLVLAAILPLLFTRILNQQA------------------------------------EN--HDSTSIWPMLKLRQAR 203 (381)
T ss_pred H-HHHHHHHHHHHHHHhcccCCCC------------------------------------CC--CCCCCHHHHHHhcchH
Confidence 2 22222211 1111111111100 00 0012234455666544
Q ss_pred HHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHH
Q 009536 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM 403 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 403 (532)
......... .........+.|.+.++.+.+ ..+.......++.+++++..|++.||+++|+.+..+..+..++.
T Consensus 204 ~~~~~~~~~----~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~ 279 (381)
T PRK03633 204 LGVNGCIIS----GIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGS 279 (381)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 322211111 112233445677777776665 34566667778899999999999999999998887777666655
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
..+.. . ........+... ...+..|.....+.|..|+++++...+..+...++|..++|.+.|.+.|+
T Consensus 280 ~~~~~----------~-~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~ 347 (381)
T PRK03633 280 IAMLS----------Q-AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN 347 (381)
T ss_pred HHHhh----------h-HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 1 111111122221 22234566667778888888888888888888999999999999999999
Q ss_pred hCcchhhHhHHHHHHHHHHhh
Q 009536 484 FGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~ 504 (532)
.|+...|.+.+.+.++..+..
T Consensus 348 ~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 348 YSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred hCccHHHHHHHHHHHHHHHHH
Confidence 999988888777776655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=281.48 Aligned_cols=383 Identities=15% Similarity=0.085 Sum_probs=282.0
Q ss_pred HHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (532)
+.+..++..+......+.+|.+.++++. ++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQIQMMTG--STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHH
Confidence 3334555666677778889999999987 88999999999999999999999999999999999999988888776655
Q ss_pred Hh-----hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009536 172 AQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (532)
Q Consensus 172 ~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~ 246 (532)
+. .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+||.+++.+.+..+ |++.
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~ 178 (417)
T PRK10489 100 ALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWN 178 (417)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHH
Confidence 42 56789999999999999998889999999999999999999999999999999999999999887777 9999
Q ss_pred HHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchH
Q 009536 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (532)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (532)
|++.++..++..+..+.+|++++.. +++ ++ . .+ +....++.+++++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~~------------~----~~-----------~~~~~~~~~~~~~~~~~ 228 (417)
T PRK10489 179 YGLAAAGTFITLLPLLRLPALPPPP--QPR-EH------------P----LR-----------SLLAGFRFLLASPVVGG 228 (417)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC--ccc-cc------------c----hH-----------HHHHHHHHHHcChHHHH
Confidence 9988887777666666666653210 000 00 0 00 00112334455554443
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM 403 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 403 (532)
.++....... ......+.|.+.++ .+.+ ..++......++.+++.++.+++.||.++++.+..+..+.+++.
T Consensus 229 ~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 303 (417)
T PRK10489 229 IALLGGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV 303 (417)
T ss_pred HHHHHHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH
Confidence 3332222111 22344456667666 4544 45677777888999999999999999777777777776666665
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
+++... . .........+..+++.+. .+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+
T Consensus 304 ~~~~~~---------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 304 GLFGLM---------P-MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHcc---------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 554431 1 222222233333333333 34555778899999999999999999999999999999999999
Q ss_pred hhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHHHH
Q 009536 483 TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMS 522 (532)
Q Consensus 483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (532)
..|+...+...+++.++..++.+...++.|+++++|.+++
T Consensus 374 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 374 MMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 9998888888888777777777677788777666655443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=265.81 Aligned_cols=377 Identities=15% Similarity=0.115 Sum_probs=263.4
Q ss_pred CCCCchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH
Q 009536 80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159 (532)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~ 159 (532)
..+...+..+.++++...++..+...+..+++.+++.||+ +++..|++.+.+.+.+.+++|+.|+|+|||.||+++.+
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni--~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v 103 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNI--SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV 103 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCC--CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence 4455667789999999999999999999999999999999 88888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 160 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
|..+|.++.++++++..||++.++|.+.|+|.+...++++.+++|.+|.++|++++++++.+..+|..+|.+++..+.+.
T Consensus 104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhh
Q 009536 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL 319 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
.++|||.|++.+++++++.++.+++.++|+.- ..++.. +++. ............+.+.
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg----a~~~~~-------~~~~-----------~~~~~ts~~kDl~~l~ 241 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERG----ARDEVD-------GENK-----------MVKPFTSVWKDLKVLA 241 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccCcccc----cccccc-------cCCc-----------CCCCccchHHHHHHHH
Confidence 88899999999999999887777766666410 000000 0000 0000111112223334
Q ss_pred cCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH--HcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCc----hhhh
Q 009536 320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ--DVGITDGALASLLVGVTNFAGALCASYLMDKEGRQ----KLLI 393 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~ 393 (532)
+++.+....+......+.....-++.+.+.+...+ +...+...+...+...++.+|.+++|.++||+.++ ....
T Consensus 242 ~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~ 321 (493)
T KOG1330|consen 242 KIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLR 321 (493)
T ss_pred ccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchh
Confidence 43443333333333333222222222222222222 22333556777778899999999999999994321 1222
Q ss_pred hhHHHHH----HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHH
Q 009536 394 GSYLGMA----ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC 469 (532)
Q Consensus 394 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 469 (532)
...+..+ .+...+...+... .......+.+++++............-+..|++|+++|.+++++...+..+.
T Consensus 322 ~~q~~~~~g~~~s~~~L~~~~~~~----~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~f 397 (493)
T KOG1330|consen 322 ASQLSAALGAPLSIPFLFLFPAFT----SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIF 397 (493)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHh
Confidence 2222111 1111222211111 1222222222222222333333455567789999999999999988887766
Q ss_pred HHH-HHHHHHHHHHhh
Q 009536 470 NFL-VGLFFLDLVETF 484 (532)
Q Consensus 470 ~~i-~~~~~g~l~~~~ 484 (532)
+-. +|.+.|.+.|+.
T Consensus 398 gd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 398 GDAASPYIVGILSDKL 413 (493)
T ss_pred ccCCCcceehhHHHHh
Confidence 555 455999998875
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=276.24 Aligned_cols=377 Identities=15% Similarity=0.103 Sum_probs=242.7
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 166 (532)
+.+....+..+...+......+.+|.+.+++|+ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL--TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344455555566666666778889999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC----C----
Q 009536 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE----D---- 238 (532)
Q Consensus 167 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----~---- 238 (532)
+.++++++++++.++++|+++|++.+... ....++.|++|+++|++++++...+..+|..+++.+.+.+. .
T Consensus 114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999987654 45668899999999999999998777777666655543321 1
Q ss_pred -CcchhHHHHHhhHHHHHHHHHHhcccccC-hhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhh
Q 009536 239 -DPHWWRTMLYIASLPGFILALGMQFTVES-PRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS 316 (532)
Q Consensus 239 -~~~~wr~~f~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (532)
..+ ||+.|++.+++.++..+..++++++ |+ ++.++.. ...+.++......++
T Consensus 193 ~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~--------------------~~~~~~~~~~~~~~~ 246 (476)
T PLN00028 193 SFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK--------------------KSGTMPKDSFSKVLR 246 (476)
T ss_pred chhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH--------------------hcCccccccHHHHHH
Confidence 235 9999999998888776666555543 31 0000000 000000001112334
Q ss_pred hhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCch---
Q 009536 317 ELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQK--- 390 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--- 390 (532)
+.++++..+...+..... +........+.|.++.+ .+.+ +++....+..++.++++++.|+++||++||+
T Consensus 247 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~ 322 (476)
T PLN00028 247 YGVTNYRTWILALTYGYS----FGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR 322 (476)
T ss_pred HHHcCchhHHHHHHHHHH----HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc
Confidence 455565544433322221 11222334455555543 4665 4567777888999999999999999998652
Q ss_pred ----hhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHH
Q 009536 391 ----LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH 466 (532)
Q Consensus 391 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 466 (532)
.......+.++..+++.. . .+........+++..+... ..+..+.+..+.. ++.+|++.|+.+...
T Consensus 323 ~r~~~~~~~~~l~~i~~~~~~~---~-----~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~~~g~~~g~~~~~g 392 (476)
T PLN00028 323 GRLWALWIVQTLGGVFCIWLGR---A-----NSLGAAIVVMILFSIFVQA-ACGATFGIVPFVS-RRSLGVISGLTGAGG 392 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc---c-----chHHHHHHHHHHHHHHHHH-hhhhhcccCcccC-hhhchhhhhhhhccc
Confidence 111111111111111111 0 1111112222222222211 2223445556654 467999999988877
Q ss_pred HHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 467 WVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 467 ~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
++|+.+++.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus 393 ~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 393 NVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred cHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 777777776654 1123358888888887777776665444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=267.47 Aligned_cols=372 Identities=19% Similarity=0.221 Sum_probs=264.5
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCCh---hHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP---ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 165 (532)
...+.++.++..+......+.+|.+.+++|.+... ...|++.+++.++..++++++|+++||+|||+++..+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 45556677778888888999999999999984222 235899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009536 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (532)
Q Consensus 166 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~ 245 (532)
++.+++.++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.+++|.+++.+.+..+ ||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~ 173 (408)
T PRK09874 96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP 173 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence 999999999999999999999999865 567778889999999999999999999999999999999999888777 999
Q ss_pred HHHhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcc
Q 009536 246 MLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (532)
Q Consensus 246 ~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (532)
.|++.+++.++..+..++ .+|+++.. + +.+ ..+ .....+.+++++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~------------------~~~------------~~~~~~~~~~~~~ 220 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQPV-S--KKE------------------MLH------------MREVVTSLKNPKL 220 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccc-c--chh------------------hhH------------HHHHHHhCcCCch
Confidence 999988877766554433 44432100 0 000 000 0011122344443
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--h----hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH
Q 009536 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--D----GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 398 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 398 (532)
...+....+.. .........+.+.+..+.+.. + .+......+++.+++.+..|++.||++||+.+..+..+
T Consensus 221 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 297 (408)
T PRK09874 221 VLSLFVTTLII---QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 32222111111 112222333444444443221 1 13334455677788888999999999999998887776
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 009536 399 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477 (532)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 477 (532)
.+++.+.+... ...+. .....+..+.+.+ ..+.......+..|++.+|+.+++.+.+..+|..++|.+.
T Consensus 298 ~~~~~~~~~~~---------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 298 SVLLLIPMSFV---------QTPLQ-LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred HHHHHHHHHHh---------ccHHH-HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 66655544431 11222 2222222222222 3455556667778889999999999999999999999999
Q ss_pred HHHHHhhCcchhhHhHHHHHHHHHHhhheee
Q 009536 478 LDLVETFGVAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 478 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
|.+.+..||+..|.+.+++.+++.++.+...
T Consensus 368 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 368 AAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888777665443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=267.63 Aligned_cols=375 Identities=15% Similarity=0.096 Sum_probs=266.7
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
++++...+.+.+..++..+....+.+.+|.+.+++|. +..+.++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNA--GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 4556667777777888888899999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch
Q 009536 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (532)
Q Consensus 163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 242 (532)
+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+|..++|.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~- 165 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP- 165 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 9999999999999999999999999999998889999999999999999999999988888999999999998888777
Q ss_pred hHHHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcC
Q 009536 243 WRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (532)
Q Consensus 243 wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
||+.|++.++..++..+.. ...||+++... +. .. . ++....++.++++
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~~---~-----------~~~~~~~~~~~~~ 214 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRVG---EK--------------LS---L-----------KELGRDYKLVLKN 214 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---cc--------------cc---H-----------HHHHHHHHHHHcC
Confidence 9999999888877665543 34555432100 00 00 0 0011234456666
Q ss_pred CcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH
Q 009536 322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 398 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 398 (532)
+..+.......+... .......+.|.++. ..+.+. .+.......++.+++.++.+++.||+++|+.+..+..+
T Consensus 215 ~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~ 290 (406)
T PRK15402 215 RRFVAGALALGLVSL----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWP 290 (406)
T ss_pred cHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 655443333222211 12223334455543 345553 35555556678889999999999999999998888777
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 399 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
..++..++....... .....+......+...+.+.. .+........ .+++++|++.++.+....++..+|+.+.+
T Consensus 291 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~ 365 (406)
T PRK15402 291 MVAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSK 365 (406)
T ss_pred HHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHH-hhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665532111 011111222222222222221 2322233322 34478999999999999999999999999
Q ss_pred HHHHhhCcchhhHhHHHHHHHH
Q 009536 479 DLVETFGVAPVYAGFGGVSLLS 500 (532)
Q Consensus 479 ~l~~~~g~~~~~~~~~~~~~~~ 500 (532)
.+++..+........++..++.
T Consensus 366 ~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 366 HAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred hcccCCchHHHHHHHHHHHHHH
Confidence 9988877544433333333333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=258.34 Aligned_cols=430 Identities=22% Similarity=0.278 Sum_probs=304.9
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCC-C-----CChhHHHHHHHHHHHHHHHHHHhhhccccccchhHH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGF-E-----GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~ 156 (532)
++..+.+.+..++.|.+.++...++.+.+.+...+.- + .++...+.+..+-.+|.++||+++|+++||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 4567778889999999999999999999988776632 1 245567889999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhhh-------cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHH
Q 009536 157 FQIDTIPLILGAIISAQAH-------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITS 229 (532)
Q Consensus 157 l~~~~~~~~~~~~~~~~a~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 229 (532)
+...++++.+++++++++. -..++...|++.|+|.|+-+|...++.+|...++.||...+.+.+..+.|...|
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999888752 256788899999999999999999999999999999998888877777777666
Q ss_pred HHhcCCCC----CC----------cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCCh-hHHHHHHHHHcCCcchH
Q 009536 230 LFLGIPAE----DD----------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML-NDAKAVIANLWGESEIN 294 (532)
Q Consensus 230 ~~~~~~l~----~~----------~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~ 294 (532)
.+++-.+. .. .+-||..|.+.++++++.....+.+||+++|.....+. +.+. .+..+.....
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~~ 273 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSVD 273 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccccc
Confidence 65553322 11 11299999999999999999999999999886332221 1211 1111111110
Q ss_pred HHHHHHHHHHHhccCCCcch---hhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh----------
Q 009536 295 KAIEEFQLVIKKDGSDLDSQ---WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG---------- 361 (532)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 361 (532)
.++... .....+..+.. +...+..... +.++..+..++..-...+....+...++++.+....
T Consensus 274 --~~~~~~-~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 274 --IEAEST-AESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKV 349 (538)
T ss_pred --cchhhc-cccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence 000000 00111111111 2222222211 233444455555555566666677777775544311
Q ss_pred HHHHHHHH-HHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccc
Q 009536 362 ALASLLVG-VTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 440 (532)
Q Consensus 362 ~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (532)
.....+.. .+.+.|..+...++|++||++..+.+++++.+.++.+...+... .......+...+..+....|.+.
T Consensus 350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~----~~~~Gf~v~y~l~~ff~NFGPn~ 425 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL----ENTIGFVVLYSLTFFFGNFGPNA 425 (538)
T ss_pred HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc----cccCceeehHHHHHHHHhcCCCc
Confidence 11122222 33344677788899999999999999999988888777643311 11111222223333444456667
Q ss_pred ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-----hhCcchhhHhHHHHHHHHHHhhheeeccCCCCC
Q 009536 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE-----TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRS 515 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (532)
....+.+|.+|++.|++..|+....+-.|++++...+.++.+ ..|.+.++++++++++++.+.. ++.||++++.
T Consensus 426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~ 504 (538)
T KOG0252|consen 426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKS 504 (538)
T ss_pred eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccC
Confidence 778889999999999999999999999999999999999999 7889999999999998888766 5667999999
Q ss_pred HHHHHHHhc
Q 009536 516 LEEIEMSLN 524 (532)
Q Consensus 516 ~~~~~~~~~ 524 (532)
++|++.+.+
T Consensus 505 leei~~e~~ 513 (538)
T KOG0252|consen 505 LEEISNEEE 513 (538)
T ss_pred HHHhcChhh
Confidence 988865544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=268.60 Aligned_cols=381 Identities=19% Similarity=0.275 Sum_probs=264.3
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+++.+....+..+..+++.....+..|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC--CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 345566666677778888888888899999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ |
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~ 170 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-W 170 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988877 9
Q ss_pred HHHHHhhHHHHHH-HHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 244 RTMLYIASLPGFI-LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 244 r~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
|+.|++.++..++ ..+...+++|++++..++ +.++..+..++.......+.+. ... ..+.+.+..+...+.+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 247 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALP-EQKATQGTKRSVFKALFQGK 247 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccc-ccccccchhhHHHHHHhcch
Confidence 9999988655544 444556677777654443 2222222222211100000000 000 00000001111122233333
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMA 400 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 400 (532)
..+..... .+..+...........+.|.+.++.+.+ ..+.......++.+++.++.+++.||+++|+.... ..+..
T Consensus 248 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 325 (398)
T TIGR00895 248 TARITVLL-WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGA 325 (398)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHH
Confidence 22222222 2222223334445556667666666655 44667777888999999999999999999844433 33333
Q ss_pred HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 401 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
+...++.... .+........++...+ ..+..+...++..|.+|++.|+++.|+.+.+.++|..++|.+.|.+
T Consensus 326 ~~~~~~~~~~-------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 326 VFAVLVGSTL-------FSPTLLLLLGAIAGFF-VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHh-------hCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3322222210 1112222222222222 2223466678889999999999999999999999999999999865
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=270.82 Aligned_cols=383 Identities=15% Similarity=0.181 Sum_probs=270.2
Q ss_pred HHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
.+++++++.++..++...+++.+|.+.+++|. +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE--SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 46677788888899999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009536 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (532)
Q Consensus 168 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f 247 (532)
.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..+ ||+.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f 167 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF 167 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887 99999
Q ss_pred HhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHH---------HHcCCcc---hHHHHHH--------H-HHHHH
Q 009536 248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIA---------NLWGESE---INKAIEE--------F-QLVIK 305 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~--------~-~~~~~ 305 (532)
++.....++..+.... .++.+. .+.+.+....... ...+... ....... . ....+
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9987776665544433 333221 1111121111000 0000000 0000000 0 00001
Q ss_pred hccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhh
Q 009536 306 KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYL 382 (532)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l 382 (532)
+..........++++++.++..+...++..+ .......+.|.+++. .+.+ ..++......++.+++.++.+++
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 245 ARNNNRALFSLKLFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred HhcCCCCccCHHHhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111112246777766554433333322 233445566666653 4554 44666677778888888999999
Q ss_pred hhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHH
Q 009536 383 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGF 461 (532)
Q Consensus 383 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~ 461 (532)
.||+++|+.+..+..+.++...++.+... ..+........+..+.+.+ ..+.......+..|++.++.++|+
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLFMLVAL-------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHhccc-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHH
Confidence 99999999998888877776665544211 1111111111222222222 223445667788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcc
Q 009536 462 SFSVHWVCNFLVGLFFLDLVETFGVA 487 (532)
Q Consensus 462 ~~~~~~~g~~i~~~~~g~l~~~~g~~ 487 (532)
.++...+|..+|+.+.|.+.+..|+.
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999887763
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=274.07 Aligned_cols=390 Identities=14% Similarity=0.106 Sum_probs=261.7
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
+|.++....+...........++..+|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 46666666666555555556678889999999999 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHH-HHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 165 ILGAIISAQAHSLDEMLW-GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
+++.++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..+ |
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-w 172 (455)
T TIGR00892 95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-W 172 (455)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-h
Confidence 999999999999998875 5799999998877777888899996 679999999999999999999999998888777 9
Q ss_pred HHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCc
Q 009536 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (532)
|+.|++.+++.++..+..+++.+.+.... +.+.++ . ........ .++. ... ...++..+....++++++.
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~---~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 242 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKS-K---EGLPPDGS-TKKL-SKK---STAEKINRFLDFSLFTHRG 242 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccc-c---ccCCCCCc-cccc-ccc---chhhhhhhhcchHHhcCch
Confidence 99999998887765554444333221000 000000 0 00000000 0000 000 0000000001123556665
Q ss_pred chHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc--CCchhhhhhH--H
Q 009536 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKE--GRQKLLIGSY--L 397 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~--~ 397 (532)
++.......+. .........+++.+.++.+.+ ..+....+.+++.++++++.|++.||. ++++...++. .
T Consensus 243 ~~~~~~~~~l~----~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 243 FLVYLSGNVIM----FLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred HHHHHHHHHHH----HHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 44333322222 222334445666666766665 456777778888999999999999973 3343333322 2
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHH
Q 009536 398 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 476 (532)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~ 476 (532)
+.+++.+++.. ..+...+.. ..+..+++.+ ..+....++.|.+|++++++++|+.+...++|.+++|.+
T Consensus 319 ~~~l~~ll~~~---------~~~~~~~~i-~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i 388 (455)
T TIGR00892 319 FNGLTHLLCAL---------AGDYTGLVI-YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL 388 (455)
T ss_pred HHHHHHHHHHH---------hchHHHHHH-HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence 22222222222 112222222 2222233333 345566778888999999999999999999999999999
Q ss_pred HHHHHHhhC-cchhhHhHHHHHHHHHH
Q 009536 477 FLDLVETFG-VAPVYAGFGGVSLLSAL 502 (532)
Q Consensus 477 ~g~l~~~~g-~~~~~~~~~~~~~~~~~ 502 (532)
.|.+.+..| |...|++.+++.+++.+
T Consensus 389 ~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 389 AGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred eeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999875 88888887776666554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=273.37 Aligned_cols=393 Identities=15% Similarity=0.114 Sum_probs=272.6
Q ss_pred CCchHHHHHHHHHHhhhhhhccccccchhHHHHH----------------------hhCCCCChhHHHHHHHHHHHHHHH
Q 009536 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAK----------------------ELGFEGNPILEGLVVSIFIAGAFV 139 (532)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~s~~~l~~~~ 139 (532)
...+|.+..+++++..+...++..++.+.+.+.+ |+++ +..+.|++.+++.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW--SGALQGLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCC--CHHHhhHHHHHHHHHHHH
Confidence 3457788888888888889999999888888876 7778 899999999999999999
Q ss_pred HHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh--hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhH
Q 009536 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL 217 (532)
Q Consensus 140 ~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 217 (532)
++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999887654 5688899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCc-chhHHHHHhhHHHHHHHHHHhccc-ccChhHHhhcCChhHHHHHHHHHcCCcchHH
Q 009536 218 CQVGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQFT-VESPRWLCKGGMLNDAKAVIANLWGESEINK 295 (532)
Q Consensus 218 ~~~~~~~g~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (532)
...+..+|.++++++++.+.+.. + ||+.|++.++++++..+.++++ +|+|+... +.+.++.
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~--------------- 234 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK--------------- 234 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH---------------
Confidence 99999999999999999988774 6 9999999998888776665554 45553110 0000000
Q ss_pred HHHHHHHHHH--hccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHH
Q 009536 296 AIEEFQLVIK--KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGV 370 (532)
Q Consensus 296 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 370 (532)
+..+...+ +.+.+.+..++++++++..+... +..+........+..++|.++++ .+.+ +.++...+..+
T Consensus 235 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 235 --KYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIW----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred --HHHHhhcccccCCCCCCCCHHHHhcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 00000000 00111223466677666544333 33333344455666778887765 3444 55777777888
Q ss_pred HHHHHhhhhHhhhhhcCCchhh--------hhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccc
Q 009536 371 TNFAGALCASYLMDKEGRQKLL--------IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 442 (532)
Q Consensus 371 ~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (532)
+.+++.++.|+++||+++|+.. ..+......+..++.... . .......+..+.+......+..+..
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-L-----SAAFYLTIIILTLANAVSSGPLAGV 382 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-c-----CCchHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999997654321 111111111111111110 0 0111111211222222222222333
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--C-cchhhHhHHHHHHHHHHhhhe
Q 009536 443 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--G-VAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--g-~~~~~~~~~~~~~~~~~~~~~ 506 (532)
.....|..|. .+|.+.|+.+....+++.++|.+.|.+.+.. + |...|.+.+++.+++.++..+
T Consensus 383 ~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 383 LINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3444566665 7999999999999999999999999887653 3 677788877777777665543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=259.83 Aligned_cols=375 Identities=16% Similarity=0.091 Sum_probs=252.7
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
+....++.++.........+.++.+.+|+|. +..+.|++.+.+.++..+++++.|+++||+|||+++..+.++++++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGL--SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCC--CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4445555555555555555667777789998 89999999999999999999999999999999999999999999887
Q ss_pred HHHH---h-hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHH-HHHHHhcCCCCCCcchh
Q 009536 169 IISA---Q-AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI-ITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 169 ~~~~---~-a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~~w 243 (532)
+++. + .++++.+++.|+++|++.+...+....++.+++|+++|++++|+.+.+.++|. ++++.+++.+.+..+ |
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~ 171 (402)
T TIGR00897 93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-E 171 (402)
T ss_pred HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-h
Confidence 7653 3 35788899999999999988888888889999999999999999999999997 689999988887777 6
Q ss_pred HHHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 244 RTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
+..+|......++..+.. ++.++.++.. ++++++ +.++....++.++++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------------~~~~~~~~~~~~~~~~ 222 (402)
T TIGR00897 172 MNTLWSALAFVLTGGVIALFSNKDIFTPQ-HMQTRE----------------------------KFSELGKAATILFTNP 222 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcc-cccCCc----------------------------chhhHHHHHHHHHcCh
Confidence 666555444333333222 2233321100 000000 0000011234566666
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhh-hhHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLI-GSYLGM 399 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~ 399 (532)
..+...+... ...........+.|.+.++.+.+ +.+.......++.+++.+..|+++||++||+... .+....
T Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~ 298 (402)
T TIGR00897 223 NVLLGGMVRI----INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC 298 (402)
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 6544333222 22233445566778888777665 3355556678899999999999999999888653 233333
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 479 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 479 (532)
+++.+.+....... ............+...+.+ +..+. .....|.. +++|+++.|+.+...+++..++|.+.|.
T Consensus 299 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~ 372 (402)
T TIGR00897 299 GIFTLALYYIPQHF---GHSFAVALIIAIALGIFLA-GYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVL 372 (402)
T ss_pred HHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332211100 0111111122222222222 22232 34455654 4579999999999999999999999999
Q ss_pred HHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 480 LVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 480 l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
+.+..|+...+++.+++.+++.++..
T Consensus 373 l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 373 FIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777766554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=267.06 Aligned_cols=408 Identities=21% Similarity=0.192 Sum_probs=291.8
Q ss_pred hhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhc
Q 009536 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 176 (532)
..........++..+ .+.+.. +.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|
T Consensus 95 ~~~~~~~~~~s~~~~--~~~~c~--~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~ 170 (521)
T KOG0255|consen 95 WVYDYGSSVYSIVSE--WNLVCD--SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN 170 (521)
T ss_pred eEecCCCCcccccch--hceeeC--cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333333444444433 344444 7778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHH
Q 009536 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI 256 (532)
Q Consensus 177 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 256 (532)
++.++++|+++|++.++.......++.|++++++|+.+..+ ......+..+++..++++.. + ||+.+++..++.++
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~ 246 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGL 246 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 66777777777777777766 4 99999999999998
Q ss_pred HHHHhcccccChhHHhhcCChhHHHHHHHHHcCCc---chH-HHHHHH--HHHHHhccCCCcchhhhhhcCCcchHHHHH
Q 009536 257 LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGES---EIN-KAIEEF--QLVIKKDGSDLDSQWSELLEEPHSRVAFIG 330 (532)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (532)
.++..++.+|+|+|+..+++.+++.+.+++....+ ... ...... ....+....+....+.++++.+..+...+.
T Consensus 247 ~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 326 (521)
T KOG0255|consen 247 FLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLY 326 (521)
T ss_pred HHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHH
Confidence 88887777799999999999999999988875432 111 111111 111111122223457778887755544444
Q ss_pred HHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHh
Q 009536 331 GALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 410 (532)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
..+..+. .....+-+.....+.+.+ ........+.....+....+...|++|||.....+..+..++++...+..
T Consensus 327 ~~~~~~~----~~~~y~gl~~~~~~lg~~-~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~ 401 (521)
T KOG0255|consen 327 LLFIWFV----FSLVYYGLSLNVSGLGGN-IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLP 401 (521)
T ss_pred HHHHHHH----HhHHHHhhhhhhhhcCch-HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333321 111222222222333333 34455555567777788889999999999999999999999988888754
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 009536 411 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVY 490 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~ 490 (532)
... ..+.......+..++.+.+.. ..+.+..|++|+..|..+.+..+....++.+++|.+.-.... ......+
T Consensus 402 ~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~ 474 (521)
T KOG0255|consen 402 DDL-----GGWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGL 474 (521)
T ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchH
Confidence 321 111222222222333333333 347889999999999999999999999999999988765444 3333333
Q ss_pred HhHHHHHHHHHHhhheeeccCCCCCHHHHHHHhc
Q 009536 491 AGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLN 524 (532)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (532)
.+++....+.+++...++||++.+.+.+..++.+
T Consensus 475 ~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 475 ILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 3456667777777778899999888765544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=272.16 Aligned_cols=383 Identities=18% Similarity=0.164 Sum_probs=272.6
Q ss_pred HHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
.+..++++.++..++....++.+|.+.+++|. +..+.+|+.+.+.++..++.++.|+++||+|||++++++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 46677788889999999999999999999999 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009536 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (532)
Q Consensus 168 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f 247 (532)
.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++.+ ||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888 99999
Q ss_pred HhhHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHH--------H-H-HcCCc-c---hHHHHHH--------HHHHH
Q 009536 248 YIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVI--------A-N-LWGES-E---INKAIEE--------FQLVI 304 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~--------~-~-~~~~~-~---~~~~~~~--------~~~~~ 304 (532)
++.++++++..+..+ +++++++. .+++.+...... . . ..+.. + ....... .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 998887776554443 34543321 111111111000 0 0 00000 0 0000000 00000
Q ss_pred HhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhhhhHh
Q 009536 305 KKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGALCASY 381 (532)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~ 381 (532)
++.+++.+....++++++.++...+...+..+ ......++.|.++++. +.+ +.+....+..++.+++.++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 238 WELTDDNPLVDLRLFKYRNFTIGCVYMSLLGL----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred HHHcCCCCccCHHHHcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222356677665554433333322 3334455667777653 444 5577778888999999999999
Q ss_pred hhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHH
Q 009536 382 LMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGF 461 (532)
Q Consensus 382 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 461 (532)
+.||+++|+.+..+..+.+++..++..... .............+...+.+....+ ......+..|+++++++.|+
T Consensus 314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 388 (485)
T TIGR00711 314 MGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMP-LTTIALSGLPPHKIARGSSL 388 (485)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHhHHHHH
Confidence 999999999988888777777666542110 1111122222222222222222223 33445577899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 009536 462 SFSVHWVCNFLVGLFFLDLVETF 484 (532)
Q Consensus 462 ~~~~~~~g~~i~~~~~g~l~~~~ 484 (532)
.+..+++|+.+|+.+.+.+.++.
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=264.26 Aligned_cols=402 Identities=15% Similarity=0.125 Sum_probs=267.1
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
++..++...+...........+....|.+.+ +|+ ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGF--SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCC--CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 3555666666777777777777777888776 588 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC-C
Q 009536 165 ILGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-D 239 (532)
Q Consensus 165 ~~~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~ 239 (532)
+++.+++++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+.+.... .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9998887764 4677888999999999999999899999999999999999999999999999998877665433 3
Q ss_pred cchhHHHHHhhHHHHHHHH-HHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 240 PHWWRTMLYIASLPGFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
.+ ||+.|++.++++++.. +..++++|+|+....+...+. ..... .+ .....+.+.+......+.+
T Consensus 182 ~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 247 (438)
T TIGR00712 182 ND-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY--------RNDYP-DD----YNEKAEQELTAKEIFMQYV 247 (438)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc--------ccccc-cc----cccccccccchHHHHHHHH
Confidence 45 9999999888877654 444556776643110000000 00000 00 0000000000000111234
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhh
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGS 395 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 395 (532)
++++..+...+...+. .........+.|.++++. +.+ ..++...+..+.++++.++.|++.||+++++....+
T Consensus 248 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~ 323 (438)
T TIGR00712 248 LPNKLLWYIAIANVFV----YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATG 323 (438)
T ss_pred ccCchHHHHHHHHHHH----HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH
Confidence 5666554443322222 223345556778887753 444 456777778889999999999999999654332223
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHHHH-HHH
Q 009536 396 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN-FLV 473 (532)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~i~ 473 (532)
.....+..+........+ ....... ...++..++. .+..........|.+|++.|+++.|+.+...++++ +++
T Consensus 324 ~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~g 398 (438)
T TIGR00712 324 VFFMTLVTIAVIVYWMNP----AGNPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 398 (438)
T ss_pred HHHHHHHHHHHHHHHhcC----CCchHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhc
Confidence 222222111111100000 0111111 1122222222 12112222456788999999999999999988875 689
Q ss_pred HHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCC
Q 009536 474 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETK 512 (532)
Q Consensus 474 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (532)
|.+.|.+.|..||...+.+.+++.+++.+..++.++|.|
T Consensus 399 p~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 399 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred chhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998888888777777766666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=259.40 Aligned_cols=351 Identities=14% Similarity=0.085 Sum_probs=261.3
Q ss_pred HHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (532)
+..+.++..+......+.+|.+..+++. +..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTG--SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 4556677778888888999999999988 89999999999999999999999999999999999999999999999988
Q ss_pred Hhhh-----cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009536 172 AQAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (532)
Q Consensus 172 ~~a~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~ 246 (532)
++++ +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+ ||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence 8887 999999999999999999999999999999999999999999999999999999999999988777 9999
Q ss_pred HHhhHHHHHHHHHHhcccc--cChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcc
Q 009536 247 LYIASLPGFILALGMQFTV--ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (532)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (532)
|++.++..++..+..+.++ |+++ +++.+. .++... +....++.+++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------~~~~~~-----------~~~~~~~~~~~~~~~ 212 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAA----SEIQAL-------------SNAVLR-----------DTREGIKFVLKNPLL 212 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC----cccccc-------------chhHHH-----------HHHhHHHHHHcCcHH
Confidence 9988776666544443332 2211 000000 000000 001234455666665
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHH
Q 009536 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAI 401 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 401 (532)
+.......+..... ......+.|.+.++ .+.+ +.+.......++.+++.++.+++.||.++|+.+..+..+.++
T Consensus 213 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 213 RTLLLLALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 54443333322211 11222455666554 3444 456777778889999999999999999999988877666666
Q ss_pred HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 402 SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
+...+... ...........+..+++.+ ..+....+..|..|++.|+++.|+.+...+++..++|.+.|.+
T Consensus 290 ~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 290 AILVVGLT---------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHhh---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555441 1112222222233333333 3456677888999999999999999999999999999999999
Q ss_pred HHhhC
Q 009536 481 VETFG 485 (532)
Q Consensus 481 ~~~~g 485 (532)
.|..|
T Consensus 361 ~~~~g 365 (365)
T TIGR00900 361 ADHLG 365 (365)
T ss_pred HHHcC
Confidence 98764
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=266.61 Aligned_cols=372 Identities=17% Similarity=0.131 Sum_probs=255.0
Q ss_pred HhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh
Q 009536 95 SNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA 174 (532)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 174 (532)
+.+...++...++...|.+.+++|. +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 4566677888889999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHH-HhcCCCCCCcchhHHHHHhhHHH
Q 009536 175 HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL-FLGIPAEDDPHWWRTMLYIASLP 253 (532)
Q Consensus 175 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~~~wr~~f~~~~~~ 253 (532)
++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+ ||+.|++.+++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 56666666666 99999988877
Q ss_pred HHHHH-HHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHH
Q 009536 254 GFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGA 332 (532)
Q Consensus 254 ~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (532)
.++.. +..++.+|+|+....+...++.. ++. +..+...+++.+..+...+.+++++..+...+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EEP----DGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYV 226 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCcc---------ccc----ccccccccccccchHHHHHHHHhcchHHHHHHHHH
Confidence 76654 44445566543211000000000 000 00000000011111223455666665544333332
Q ss_pred HHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHH
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA 409 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
+. .........+.+.++++ .+.+ +.+.......++.+++.++.+++.||..+++...............+...
T Consensus 227 ~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
T TIGR00881 227 FV----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302 (379)
T ss_pred HH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 22 22333445556666644 3544 45677778888999999999999998643332222222211111111111
Q ss_pred hcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 009536 410 TSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV 489 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~ 489 (532)
...+ ...........+..+....+..+....+..|.+|++.|+++.|+.+...++|..++|.+.|.+.|..||+..
T Consensus 303 ~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 303 WLNP----AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hcCc----chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 1000 111112222222222222333344456778999999999999999999999999999999999999998765
Q ss_pred h
Q 009536 490 Y 490 (532)
Q Consensus 490 ~ 490 (532)
|
T Consensus 379 f 379 (379)
T TIGR00881 379 F 379 (379)
T ss_pred C
Confidence 3
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-31 Score=256.19 Aligned_cols=350 Identities=16% Similarity=0.112 Sum_probs=251.7
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
+..+.+..++..+...++.|.+|.+.+++|. ++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 3444444555667778888999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009536 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (532)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~ 248 (532)
+++.++++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.+..+ ||+.|+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~ 164 (401)
T PRK11043 86 LGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFA 164 (401)
T ss_pred HHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Confidence 9999999999999999999999988888888999999999999999999988899999999999999888877 999999
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHH
Q 009536 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
+.+++.++..+..++++|+++. + + +++.+..++++++++..+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~---~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 209 (401)
T PRK11043 165 TLFAITLLLILPTLRLKPSKKA---R-K-------------------------------QSQDALTFKQLLKSKTYLGNV 209 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc---c-c-------------------------------cchHHHHHHHHHcChhHHHHH
Confidence 9888887766665555554320 0 0 000112345556665544333
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
+...... ........+.|.++++.+.+. .++......++.+++.++.+++.||+++|+.........+++.+.+
T Consensus 210 ~~~~~~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 285 (401)
T PRK11043 210 LIFAACS----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAI 285 (401)
T ss_pred HHHHHHH----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 2222211 122333445667777666663 4555666677888899999999999999887665555544444333
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 485 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 485 (532)
....... ......................+.......+..| +.+|++.|+.+.....++..++.+.|.+.+...
T Consensus 286 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 286 WLASLLS----HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHhc----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 2211110 1112222221222122222233444455556665 469999999999999999999999998877543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=256.40 Aligned_cols=359 Identities=15% Similarity=0.085 Sum_probs=253.0
Q ss_pred HHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH-hhHHHHHHHHHH
Q 009536 94 MSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIIS 171 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~~~~~~~ 171 (532)
+.++...+..+...|.+|. +.+++|. +..+.|++.+++.+...+.+++.|+++||+|||+.++. +.++.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 3467777788888888886 5788999 89999999999999999999999999999999887654 566667788888
Q ss_pred HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccch--hhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009536 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL--GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (532)
Q Consensus 172 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~ 249 (532)
+++++++.+++.|+++|.+.+...|...+++.|+.++++|++. .+....+.++|.++|+.+++.+.+..+ ||+.|++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~ 160 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT 160 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence 9999999999999999988888888888899999887777654 577888889999999999999988777 9999999
Q ss_pred hHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHH
Q 009536 250 ASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (532)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
.++..++..+.. +++||.|++..++ ....+.++.++++..+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 205 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGA-----------------------------------LTRLEVRGLLASRDTRLLF 205 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCcccc-----------------------------------cCcchhhhhhcCcchHHHH
Confidence 888777665544 4467655310000 0001122234455444333
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHH-HHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTF-QDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 405 (532)
....+... .......+.|.++ ++.+.+ ..+.......+..+++.++.|++.||+++|+.+..+..+..+....
T Consensus 206 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 281 (375)
T TIGR00899 206 VACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTG 281 (375)
T ss_pred HHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 32222221 1122233344444 344544 3345555555667778889999999999999887766655444433
Q ss_pred HHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009536 406 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 484 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 484 (532)
+... ++.+... ......+++.+ ..+....+..|..|++ ++++.++.+...++|..++|.+.|.+.+..
T Consensus 282 ~~~~---------~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~ 350 (375)
T TIGR00899 282 LAAD---------NSLWALL-MLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW 350 (375)
T ss_pred HHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3331 1122222 22222222222 2345556777887764 679999999999999999999999999999
Q ss_pred CcchhhHhHHHHHHHHHHhhh
Q 009536 485 GVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 485 g~~~~~~~~~~~~~~~~~~~~ 505 (532)
|++..|.+.+++.+++.++..
T Consensus 351 g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 351 SYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHh
Confidence 999999888887777766553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=259.74 Aligned_cols=369 Identities=14% Similarity=0.091 Sum_probs=256.4
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
....+..+++..++.++......+.+|.+++++|+ ++.+.|++.+.+.+++.+++++.|++.||+|||+++..+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34456777777888889999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC----
Q 009536 165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE---- 237 (532)
Q Consensus 165 ~~~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---- 237 (532)
+++.+++ .++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+++.+++.+.
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999886 468899999999999999999999999999999888887777899999999999999998875432
Q ss_pred -------------CC-cc-------hhHHHHHhhHH-HHHHHHHH-hcccccChhHHhhcCChhHHHHHHHHHcCCcchH
Q 009536 238 -------------DD-PH-------WWRTMLYIASL-PGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (532)
Q Consensus 238 -------------~~-~~-------~wr~~f~~~~~-~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (532)
+. .+ +||++|+.... ..++..+. ...+||.+. + +.
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~----------------- 239 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NH----------------- 239 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cc-----------------
Confidence 00 01 26667764333 33232222 222333211 0 00
Q ss_pred HHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHH-HHH-cCCC--hhHHHHHHHHH
Q 009536 295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQD-VGIT--DGALASLLVGV 370 (532)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~~~ 370 (532)
.+++..+....+++++++|.++...+..++... .......|.+.+ .++ .+.+ ..+.......+
T Consensus 240 ---------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~ 306 (438)
T PRK10133 240 ---------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV 306 (438)
T ss_pred ---------ccccccchhhhHHHHHhCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence 000001112234566777776554433322222 222233344444 343 3555 45777888899
Q ss_pred HHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccccccccc
Q 009536 371 TNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS 450 (532)
Q Consensus 371 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (532)
+.++++++.+++.||+++|+++..+..+..+.+.+..+. .....+....+. +.......|..++...+..
T Consensus 307 ~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~-glg~~~i~P~~~s~a~~~~ 376 (438)
T PRK10133 307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLC-SAFMSIQYPTIFSLGIKNL 376 (438)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHH-HHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999888776665555444331 111122222222 2222234577777777877
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHH
Q 009536 451 SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSAL 502 (532)
Q Consensus 451 ~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 502 (532)
|++ .+++.++.. +..+|+.++|.+.|.+.|..| .+..|++...+.+....
T Consensus 377 ~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 377 GQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred chh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 664 778888876 456789999999999999887 66777655544444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=255.86 Aligned_cols=371 Identities=17% Similarity=0.107 Sum_probs=256.0
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
...++++.++..+.........+.+.+|++. ++.+.+|+.+.+.+++.++++++|+++||+|||++++.+.++++++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHY--PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence 3455667777777666666667777889888 88889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009536 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (532)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~ 248 (532)
++++++.+. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+.. |+..+.
T Consensus 83 ~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~ 157 (393)
T PRK11195 83 LLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALA 157 (393)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 888887664 788999999999999999999999999999999999999999999999999999998743 777777
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHH
Q 009536 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
+.+...++..+..+.+||+|++. +.+.++.... .++. ...++.+++++..+..+
T Consensus 158 i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~-------------~~~~-----------~~~~~~l~~~~~~~~~~ 211 (393)
T PRK11195 158 VCALIYLLAALFNLFIPRLGARR--PGQSWNPIAL-------------LRDF-----------FHACRVLWRDKLGRFSL 211 (393)
T ss_pred HHHHHHHHHHHHHhcCCCCcccc--cccCCCHHHH-------------HHHH-----------HHHHHHHHhCchhHHHH
Confidence 76665555555556677654311 0000000000 0000 01234556666655444
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHH-cC--CChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQD-VG--ITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 405 (532)
+...+.... .....+..+.+.++ .+ ..+.+......+++.+++.++.+++.||.++++.+..+.. .++....
T Consensus 212 ~~~~~~~~~----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~ 286 (393)
T PRK11195 212 AGTTLFWGA----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLL 286 (393)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHH
Confidence 333222221 12222333333332 23 3356778888889999999999999999988887766643 3333333
Q ss_pred HHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 406 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRT-RGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
+.. ..+. +......+..+++.+. .+...+...+..|++. +|++.++.+...+++..++..+.+.+ +.
T Consensus 287 ~~~---------~~~~-~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~ 355 (393)
T PRK11195 287 MAL---------QHSL-LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VK 355 (393)
T ss_pred HHH---------HhHH-HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HH
Confidence 322 1122 2222222233333332 2334556667656554 79999999999999999999999854 67
Q ss_pred hCcchhhHhHHHHHHHHHHhhheee
Q 009536 484 FGVAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
.|.+..+.+.+...+++..+.+.++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 356 LGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776666665555544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=254.33 Aligned_cols=370 Identities=15% Similarity=0.134 Sum_probs=251.2
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 165 (532)
......+.+..+...+......|.+|.+.++++. +..+.++..+++.+++.++++++|+++||+|||++++.+.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 92 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRDFNA--DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFT 92 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHH
Confidence 3334455556667778889999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009536 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (532)
Q Consensus 166 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~ 245 (532)
++.+++++++|++.++++|+++|++.+...+....++.|++++++|+++++++..+..+|..+||++++.+.+..+ ||+
T Consensus 93 ~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~ 171 (413)
T PRK15403 93 LACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKV 171 (413)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHH
Confidence 9999999999999999999999999987777788889999999999999999999999999999999998887777 999
Q ss_pred HHHhhHHHHHHHHHH-hcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcc
Q 009536 246 MLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (532)
Q Consensus 246 ~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (532)
.|++.++..++..+. .+++||+++. +++..+ .+.....++.+++++.+
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~----------------------------~~~~~~~~~~ll~~~~~ 220 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS----------------------------AKSVLRDFRNVFRNRLF 220 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC----------------------------hHHHHHHHHHHHcCHHH
Confidence 999988887776554 3446765420 000000 00001234566777665
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHH
Q 009536 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAI 401 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 401 (532)
+...+...+. .........+.|.++++. +.+ +.++.......+.+++..+.+++.++..+++.......+..+
T Consensus 221 ~~~~l~~~~~----~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i 296 (413)
T PRK15403 221 LTGAATLSLS----YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHH----HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 5443332222 223344555667777655 554 345555556677777777777766554444443322333333
Q ss_pred HHHHHHHHhcCCCCccchhhH-HHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 402 SMLLVVGATSLPLDEDFSHNL-SILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
+..++....... ...+. ......++..+.+.. .|...... ..-....+|++.++.+.....+..+++...+++
T Consensus 297 g~~l~~~~~~~~----~~~~~~~~~~~~l~~~G~~~~-~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 297 GLALLIVGNLLW----PHVWLWSVLGTSLYAFGIGLI-FPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHH-hHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332211000 01111 122222232332222 23232211 111222479999999999999999999999988
Q ss_pred HHhhCcchhhHhHHHHHHHH
Q 009536 481 VETFGVAPVYAGFGGVSLLS 500 (532)
Q Consensus 481 ~~~~g~~~~~~~~~~~~~~~ 500 (532)
.+. +....|...++++.+.
T Consensus 371 ~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 371 WFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHc-CCchHHHHHHHHHHHH
Confidence 776 5555665555444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=255.84 Aligned_cols=351 Identities=15% Similarity=0.139 Sum_probs=254.1
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 166 (532)
+.+..+.+..+..........+.+|.+.+++|. ++.+.+++.+++.++..++++++|+++||+|||+++..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLST--PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 334455555566778888999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009536 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (532)
Q Consensus 167 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~ 246 (532)
+.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~ 161 (385)
T TIGR00710 83 SSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAI 161 (385)
T ss_pred HHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888777 9999
Q ss_pred HHhhHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcch
Q 009536 247 LYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325 (532)
Q Consensus 247 f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (532)
|++.++..++..+..+ +.||+++.. .+ + ..+ .....+++.++++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------~~~---------------~~~~~~~~~~~~~~~~ 209 (385)
T TIGR00710 162 FAFLSLAGILLSALIFFILPETLPYE---AR-I-------------QIS---------------TYFETFLLLLKSKMFW 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCc---cc-C-------------CHH---------------HHHHHHHHHHcCchhH
Confidence 9998877776554443 455543210 00 0 000 0011234455666555
Q ss_pred HHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
...+...... ........+.|.+++ +.+.+ +.+.......++.+++.++.+++.||+++|+.+..+..+..++
T Consensus 210 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 210 GYALIYGASF----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVS 285 (385)
T ss_pred HHHHHHHHHH----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4433322222 122333444555554 44554 4466777778899999999999999999999888877777766
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 403 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
..++...... ...............+.+.+ ..+.......|..| +.++++.++.+.....++.+.+.+.+.+.
T Consensus 286 ~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 286 AVLLEITAIL-----GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6655442210 01112222222222222222 23444556667766 56999999999998877777777777444
Q ss_pred H
Q 009536 482 E 482 (532)
Q Consensus 482 ~ 482 (532)
+
T Consensus 360 ~ 360 (385)
T TIGR00710 360 G 360 (385)
T ss_pred c
Confidence 3
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=251.03 Aligned_cols=343 Identities=29% Similarity=0.380 Sum_probs=282.4
Q ss_pred HHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 009536 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170 (532)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 170 (532)
.+.+..+...++.....+..|.+.+++|. +..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGL--SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 45566778888888999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009536 171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA 250 (532)
Q Consensus 171 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~ 250 (532)
+.+.++++.++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+ ||+.|++.
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL 159 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877 99999998
Q ss_pred HHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHH
Q 009536 251 SLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG 330 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (532)
++..++..+...+++ +.++.
T Consensus 160 ~~~~~~~~~~~~~~~------------------------------------------------------------~~~~~ 179 (352)
T cd06174 160 AILGLLLALLLLFLL------------------------------------------------------------RLLLL 179 (352)
T ss_pred HHHHHHHHHHHHHHH------------------------------------------------------------HHHHH
Confidence 888777665554332 11222
Q ss_pred HHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCch-hhhhhHHHHHHHHHHH
Q 009536 331 GALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGALCASYLMDKEGRQK-LLIGSYLGMAISMLLV 406 (532)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~ 406 (532)
..+..+...........+.+.+.++. +.+ +.+.......++..++.++.+++.||+++|+ .+..+..+..++.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22333333444555666777777665 444 4577778888999999999999999999999 8888888888877776
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV 486 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~ 486 (532)
... .+........++.........+....+..|..|+++|++..|+.+...+++..+++.+.+.+.+..++
T Consensus 260 ~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~ 330 (352)
T cd06174 260 ALA---------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330 (352)
T ss_pred HHh---------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 652 22222223333333333334577788999999999999999999999999999999999999999999
Q ss_pred chhhHhHHHHHHHHHHhhh
Q 009536 487 APVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~ 505 (532)
...+.+.+++.+++.++.+
T Consensus 331 ~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 GGVFLILAALALLAALLLL 349 (352)
T ss_pred chHHHHHHHHHHHHHHHhe
Confidence 9999988888888776553
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=255.76 Aligned_cols=353 Identities=17% Similarity=0.208 Sum_probs=245.4
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
+.+.....+..........+.+|.+.+++|. +..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNA--SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 3344444555566666777889999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009536 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (532)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~ 248 (532)
+++.++++++.+++.|+++|++.+...+...+++.|++++++|+++.++.+....+|..++|.+++.+.+..+ ||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~ 161 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFY 161 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877777 999999
Q ss_pred hhHHHHHHHHHH-hcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHH
Q 009536 249 IASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (532)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (532)
+.++..++..+. .++++|+++. +.+ + +.......++.++++.++..
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~---~~~-~-----------------------------~~~~~~~~~~~~~~~~~~~~ 208 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETRPA---RAP-A-----------------------------ASSKPRENSESLLNRFFLSR 208 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCc---ccC-C-----------------------------ccchHHHHHHHHhCHHHHHH
Confidence 988777665544 3445554320 000 0 00000112234444443332
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHH-HHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTF-QDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISML 404 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 404 (532)
.....+... .......+.|.++ ++.+.+ ..+......+++.+++.++.+++.||+++|+.+..+..+..++.+
T Consensus 209 ~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 284 (392)
T PRK10473 209 LVITTLSVT----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGI 284 (392)
T ss_pred HHHHHHHHH----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 222221111 1112223334444 344555 345666777888999999999999999999998888877777766
Q ss_pred HHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009536 405 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 484 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 484 (532)
++.... ..........+...+++.+... ....+..|.++++ |..+....++..+++.+.+.+.+..
T Consensus 285 ~~~~~~--------~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~ 350 (392)
T PRK10473 285 TLALSP--------SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL 350 (392)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665521 1122222223333333332221 2223344544443 4444556677788888888888888
Q ss_pred CcchhhHhHHH
Q 009536 485 GVAPVYAGFGG 495 (532)
Q Consensus 485 g~~~~~~~~~~ 495 (532)
|+.....+.+.
T Consensus 351 g~~~~~~~~~~ 361 (392)
T PRK10473 351 GISAWNMLIGI 361 (392)
T ss_pred ccchhHHHHHH
Confidence 87654544444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=238.14 Aligned_cols=379 Identities=15% Similarity=0.156 Sum_probs=291.0
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
...+.+.+..++..+..+...++++..+.+.+|+|+ |+.|.+++.++..+...+..++.|.+.||||.|++..++.++
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L--S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l 88 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL--SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL 88 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC--CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence 345567777777778888888999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc---HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc
Q 009536 164 LILGAIISAQAHS---LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (532)
Q Consensus 164 ~~~~~~~~~~a~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 240 (532)
..+-.+..+++.+ ++++++++++.|++. +.+.+...++++||||+++|.++|+.. ..++|..+..+++..+....
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 9999999999854 459999999999985 588888999999999999999999999 88888888877777776665
Q ss_pred c--hhHHHHHhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCc-chhh
Q 009536 241 H--WWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLD-SQWS 316 (532)
Q Consensus 241 ~--~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 316 (532)
+ .||....+..+..++..+..++ +.|.|.. +...++.. ...+
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~----------------------------------r~~~~~~~~~~~~ 212 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH----------------------------------RASVKPQLPAQLK 212 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh----------------------------------hccccccchhHHH
Confidence 5 3999999988888876555544 5555431 01111111 3455
Q ss_pred hhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhh
Q 009536 317 ELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLI 393 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 393 (532)
.+++++..|... +.++..+..+..+..++|.++++ ++.+ +++.......+.+.+.++++|+++||+|.+|+..
T Consensus 213 ~v~~~~~~W~ls----llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~ 288 (417)
T COG2223 213 AVFSNKDTWLLS----LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL 288 (417)
T ss_pred HHhcCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence 666677655443 34444566777778888888765 4555 4567777888889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHH-HHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHH
Q 009536 394 GSYLGMAISMLLVVGATSLPLDEDFSHNLSILG-TLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFL 472 (532)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i 472 (532)
..+..++++..++...+... ........... .+......+.|. ...+-++...+|. +.|.+.|+...+..+|++.
T Consensus 289 ~~f~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 289 AVFVGMALAAALLSLFLTGF--GHGGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHHHHHHHHHHHHcccccc--ccCcchHHHHHHHHHHHHHhccCc-chheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence 88888888887776632111 00011222222 222223333333 3456778888877 4899999999999999999
Q ss_pred HHHHHHHHHHhhC-cchhhHhHHHHHHHHHHhhheee
Q 009536 473 VGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 473 ~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
-|...|...+..| +...|+++..+.+++.++.+...
T Consensus 365 lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 365 LPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 78888888888888777665443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-31 Score=254.55 Aligned_cols=362 Identities=19% Similarity=0.221 Sum_probs=267.1
Q ss_pred HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh--cHHHHHHHHHHHhhhh
Q 009536 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGI 191 (532)
Q Consensus 114 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~ 191 (532)
..++++ +..+.+++.++++.|+.+++++.|++.||||.|+++..+.++.++++++..++. +++.+++.|++||++.
T Consensus 65 ~~~~~w--s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 65 AGEYDW--SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred CceecC--CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 346777 889999999999999999999999999999999999999999999999999874 5567899999999999
Q ss_pred hhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC-cchhHHHHHhhHHHHHHHHHHhccc-ccChh
Q 009536 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWWRTMLYIASLPGFILALGMQFT-VESPR 269 (532)
Q Consensus 192 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~~~~-~~~p~ 269 (532)
|..+|+...+...|.|++||++..++...+..+|.+++.+++|++.+. .| |++.|++.++.+++..++++++ .|+|.
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999988 66 9999999999999988777654 46664
Q ss_pred HHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCC--CcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHH
Q 009536 270 WLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSD--LDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLY 347 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (532)
. +.. ..++|.+..+....+++.+ .+.+|+++++++..|..++. .+........+..
T Consensus 222 ~---h~~---------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~----~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 222 K---HPN---------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWIS----AFGGNWGFYLLLT 279 (466)
T ss_pred c---CCC---------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2 100 1111112222222211111 46789999999876555443 3444556777888
Q ss_pred hHHHHHHHc---CCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCc---------hhhhhhHHHHHHHHHHHHHHhcCCCC
Q 009536 348 FSSLTFQDV---GITDGALASLLVGVTNFAGALCASYLMDKEGRQ---------KLLIGSYLGMAISMLLVVGATSLPLD 415 (532)
Q Consensus 348 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
|.|.|+++. +..+.++...+..+...+..+++|.++||..+| ..-.++....+++++.+.+...
T Consensus 280 y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~---- 355 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD---- 355 (466)
T ss_pred HhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC----
Confidence 899998865 445778999999999999999999999998663 1123334444444444443211
Q ss_pred ccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCcchhhHh
Q 009536 416 EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE---TFGVAPVYAG 492 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~---~~g~~~~~~~ 492 (532)
......+. .+.+..++.....+-.+.-..+. .+++.+..+|+.+.+..+.++++|.+.|.+.. ...|+.+|++
T Consensus 356 --~~~~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i 431 (466)
T KOG2532|consen 356 --EHRLLAVI-LLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLI 431 (466)
T ss_pred --CcchHHHH-HHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence 11112222 22222222221222222222232 46679999999999999999999999999983 2359999999
Q ss_pred HHHHHHHHHHhhheee
Q 009536 493 FGGVSLLSALFAYYFI 508 (532)
Q Consensus 493 ~~~~~~~~~~~~~~~~ 508 (532)
.+++.+++.++..++-
T Consensus 432 ~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 432 AAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHhchheeEee
Confidence 9999998887665553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-30 Score=250.07 Aligned_cols=358 Identities=14% Similarity=0.072 Sum_probs=248.1
Q ss_pred HHhhhhhhccccccchhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHH
Q 009536 94 MSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA 172 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 172 (532)
...++.........+.++ .+.+++|+ +..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGW--AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 445555555566566665 46788999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHH
Q 009536 173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASL 252 (532)
Q Consensus 173 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~ 252 (532)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++. ..+ ||+.|++.++
T Consensus 95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~ 172 (400)
T PRK11646 95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAV 172 (400)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999999999999988 556 9999999887
Q ss_pred HHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHH
Q 009536 253 PGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG 331 (532)
Q Consensus 253 ~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (532)
..++..+.. ++.||.+. .+ .+++....++++++++.++......
T Consensus 173 ~~~~~~i~~~~~~~~~~~-----~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (400)
T PRK11646 173 LFVLAAAFNAWLLPAYKL-----ST------------------------------VRTPVREGMTRVLRDKRFVTYVLTL 217 (400)
T ss_pred HHHHHHHHHHHhCCcccc-----cc------------------------------cchhhHHHHHHHHcCchHHHHHHHH
Confidence 766654433 33443210 00 0000112344556666544332222
Q ss_pred HHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhh-hcCCchhhhhhHHHHHHHHHHHHH
Q 009536 332 ALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMD-KEGRQKLLIGSYLGMAISMLLVVG 408 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~ 408 (532)
..... .......+.|.+.++.+.. ..+.......+....+....+++.| |++.++.+..+..+.+++..++..
T Consensus 218 ~~~~~----~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~ 293 (400)
T PRK11646 218 TGYYM----LAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM 293 (400)
T ss_pred HHHHH----HHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 11111 1122334567776665443 3345555555555544444455554 566666666666666666555544
Q ss_pred HhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Q 009536 409 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--- 485 (532)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--- 485 (532)
.. +.........++..+.+ ...|...++..+..|++++|+++|+.+...++|..+||.+.|.+.|..+
T Consensus 294 ~~--------~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~ 364 (400)
T PRK11646 294 VS--------NLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALN 364 (400)
T ss_pred hh--------hHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcC
Confidence 11 11111121222222222 2335666788899999999999999999999999999999999998753
Q ss_pred -cchhhHhHHHHHHHHHHh
Q 009536 486 -VAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 486 -~~~~~~~~~~~~~~~~~~ 503 (532)
....+...+.+.+++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 365 QPELPWMMLGIIGLITLLA 383 (400)
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 234444444444444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=255.06 Aligned_cols=345 Identities=25% Similarity=0.315 Sum_probs=249.8
Q ss_pred HHHhhhhhhccccccchhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH
Q 009536 93 SMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (532)
+++.++..+......+.+| .+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGL--SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTT--TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4567777888888899999 89999999 89999999999999999999999999999999999999999999997777
Q ss_pred HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhH
Q 009536 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (532)
Q Consensus 172 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~ 251 (532)
.+++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+.+..+ ||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence 7778888999999999999999999999999999999999999999999999999999999999997777 999999999
Q ss_pred HHHHHHHHH-hcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHH
Q 009536 252 LPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG 330 (532)
Q Consensus 252 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (532)
++.++..++ ..+++++++....+.+.++. ++.+++....++.+++++..+..+..
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA 214 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence 998887664 24444433211111000000 00000111125556666655522222
Q ss_pred HHHHHHhhhcchhhHHHhHHHH-HHHcCCC---hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHH
Q 009536 331 GALFLLQQFAGINGVLYFSSLT-FQDVGIT---DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406 (532)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
.... .........+.|.+ .+..+.+ +.+.......+..+++.++.+++.||+++++..........+..+.+
T Consensus 215 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (352)
T PF07690_consen 215 FFLF----FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGL 290 (352)
T ss_dssp HHHH----HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHH----HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 2222 22233355566665 3444444 34556777788888889999999999999887776666665555554
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHH
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG 474 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 474 (532)
..... ...........++.+.......+....+..+..|++++|++.|+.+...+++..++|
T Consensus 291 ~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 291 LLLPF------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCSHH------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 43211 111122222222222222223567778899999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=250.00 Aligned_cols=368 Identities=12% Similarity=0.071 Sum_probs=260.2
Q ss_pred HHHHHHHhhhhhhccccccchhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
+..+.+..++.........+.+| .+.+++|+ +..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSL--SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 44555566777777777777765 56678999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009536 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (532)
Q Consensus 168 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f 247 (532)
.++.+++++++.++++|++.|.+.+...+...++..|.+++++|++++++.....++|.+++|.+++++.. .+ |+..|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f 164 (395)
T PRK10054 87 FIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPF 164 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHH
Confidence 99999999999999999999988888888899999999999999999999999999999999999998875 45 99999
Q ss_pred HhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchH
Q 009536 248 YIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (532)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (532)
++.++..++..+.. ++++++++. + +.+ + +.....++.++++.++.
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~~~~---~-~~~--------------------------~----~~~~~~~~~~~~~~~~~ 210 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRSEKA---I-ATE--------------------------T----GSVWSPSVLLQDKALLW 210 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc---c-ccc--------------------------h----hhhhhhhhhccCceehH
Confidence 98887777654443 334443210 0 000 0 00011245566676665
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISML 404 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 404 (532)
......+..+...........+.+.. ++.+.+. .+.......+.........|++.||.++|+.+..+..+..++..
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 289 (395)
T PRK10054 211 FTCSGFLASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLV 289 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 55443333322221112222222222 2233322 23444444555556667888999999999988888777777666
Q ss_pred HHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 405 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
.+... .+..+.........+.+.+. .|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+
T Consensus 290 ~~~~~---------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 290 GFIFS---------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred HHHHc---------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 55431 11122222222233333222 4566677888889999999998755 6779999999999999999
Q ss_pred hCcchhhHhHHHHHHHHHHhhh
Q 009536 484 FGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
.|+...|++.+.+..+..++..
T Consensus 360 ~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 360 LPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred cChhhHHHHHHHHHHHHHHHHH
Confidence 9988888777666666555543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=247.96 Aligned_cols=358 Identities=15% Similarity=0.075 Sum_probs=257.6
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
+.++++..+..++..+..++.+|.+++++|+ +..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~--s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTL--TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 5677778888899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHh---hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC------
Q 009536 169 IISAQ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------ 239 (532)
Q Consensus 169 ~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------ 239 (532)
+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88654 468999999999999999999999999999999999999999999999999999999988766321
Q ss_pred -------------------cchhHHHHHhhHHHHHHHHHHhcc--cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHH
Q 009536 240 -------------------PHWWRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE 298 (532)
Q Consensus 240 -------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (532)
..+||++|++.+++.++..+...+ .|+.++ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~----------------------- 214 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S----------------------- 214 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c-----------------------
Confidence 013999999888877665544433 222110 0
Q ss_pred HHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcC--CCh--hHHHHHHHHHHHHH
Q 009536 299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG--ITD--GALASLLVGVTNFA 374 (532)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~ 374 (532)
++++.......+++++++..+...+..+++.. .......+++.+.++.+ .+. +.........+..+
T Consensus 215 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg----~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~v 284 (410)
T TIGR00885 215 ------DAKQISFSASLSRLARIRHYREGVIAQFFYVG----VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFI 284 (410)
T ss_pred ------ccccccchhhHHHHHhChhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 00000111133455666665554443333322 23334456666665542 222 23334445577889
Q ss_pred HhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccc
Q 009536 375 GALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRT 454 (532)
Q Consensus 375 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
|+++++++.||+++|+.+.+...+..+..++.... ..... ...+.....+....+|..++...+..+++.
T Consensus 285 GR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---------~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~ 354 (410)
T TIGR00885 285 SRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---------GGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDT 354 (410)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999998877777776666665541 12222 222333333444455888888888888775
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhh------CcchhhHhHHHHHH
Q 009536 455 RGKIMGFSFSVHWVCNFLVGLFFLDLVETF------GVAPVYAGFGGVSL 498 (532)
Q Consensus 455 ~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~------g~~~~~~~~~~~~~ 498 (532)
+..+.++... -+|+++.|++.|.+.|.. +++..|++...+.+
T Consensus 355 ~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 355 KYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred hhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 5445555443 399999999999999964 36666665444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=248.72 Aligned_cols=358 Identities=16% Similarity=0.179 Sum_probs=241.5
Q ss_pred hhhhhccccccchhHHHHHhhCCCCChhHHHHHHHH--H---HHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH
Q 009536 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSI--F---IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~---~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (532)
+.+.++...++...+.+.+++..+.++.+.+.+.+. + .++..+++++.|+++||+|||++++.+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888886543345555554443 3 33344689999999999999999999999999999999
Q ss_pred HhhhcHH--------HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC------
Q 009536 172 AQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------ 237 (532)
Q Consensus 172 ~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------ 237 (532)
++++++. .++++|+++|++.+...+....++.|++++++|++..++.+.+..+|.++++.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999875 47889999999999999999999999999999999999999999999999988765442
Q ss_pred --CCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchh
Q 009536 238 --DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315 (532)
Q Consensus 238 --~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (532)
+..+ ||+.|++.+++.++..+.....+|+|++..++ +++++...+.
T Consensus 163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 210 (394)
T TIGR00883 163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ-------------------------------EKHKKKRGPI 210 (394)
T ss_pred Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-------------------------------hccccccCCH
Confidence 2345 99999988777766655555566654321100 0011112334
Q ss_pred hhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhh
Q 009536 316 SELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLL 392 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 392 (532)
++.+++++.. ... .....+...........+.|.+.+ +.+.+ ..+.......++..++.++.|++.||++||+.+
T Consensus 211 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 211 RETLTKHRKP-FLL-GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHhchHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4555544311 111 122222223334445566777764 34444 446666777888999999999999999999977
Q ss_pred hhhHHHHHHHH-HHHHHHhcCCCCccchhhHHHHHHHHHHHHH-hcccccccccccccccCccccchhHHHHH-HHHHHH
Q 009536 393 IGSYLGMAISM-LLVVGATSLPLDEDFSHNLSILGTLFYIFTF-AIGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVC 469 (532)
Q Consensus 393 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g 469 (532)
.....+..+.. ..+..... ..............++ .....+....++.|.+|++.|+++.++.+ ....+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g 361 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALLD-------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIF 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHH
Confidence 65544443322 22211110 1111222222222222 22334556788899999999999999854 445678
Q ss_pred HHHHHHHHHHHHHhhC-cchhhHhHHH
Q 009536 470 NFLVGLFFLDLVETFG-VAPVYAGFGG 495 (532)
Q Consensus 470 ~~i~~~~~g~l~~~~g-~~~~~~~~~~ 495 (532)
..++|.+.|.+.|..| +...++...+
T Consensus 362 ~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 362 GGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred hhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 8899999999999988 5555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=251.74 Aligned_cols=374 Identities=14% Similarity=0.108 Sum_probs=257.1
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-----chhHH-HHHhhH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRT-FQIDTI 162 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~ 162 (532)
...+.+..+..+.......+.+|...++.|. +..++|.. +.....+ ++.+++|+++||+ |||+. ++.+.+
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~--~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENI--DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 3444455566777777888899999999998 88888886 4444444 6899999999999 99886 667777
Q ss_pred HHHHHHHHHHhh---hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC-
Q 009536 163 PLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED- 238 (532)
Q Consensus 163 ~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~- 238 (532)
+.+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|++||+++.++...+..+|.++++.++.++.+
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777775 4788899999999999999999999999999999999999999999999999999999988887
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
..+ ||..|++.+++.++..+..++.+|+++.. .+.++ . ++....++++.
T Consensus 170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~-------------~--------------~~~~~~~l~~~ 218 (491)
T PRK11010 170 YLG-WQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT-------------L--------------EQAVVAPLRDF 218 (491)
T ss_pred ccC-HHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc-------------h--------------hhhHHHHHHHH
Confidence 456 99999998888777766655666653210 00000 0 00001234455
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHH-HHHcCCCh--hHHHH-HHHHHHHHHHhhhhHhhhhhcCCchhhhh
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQDVGITD--GALAS-LLVGVTNFAGALCASYLMDKEGRQKLLIG 394 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 394 (532)
++++..+.......+.... ......+.+.+ .++.|.+. .+... ....++.+++.+++|++.||+++|+.+.+
T Consensus 219 ~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i 294 (491)
T PRK11010 219 FGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMI 294 (491)
T ss_pred HcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6555544433333222221 11222233333 34456653 34544 34457889999999999999999887776
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhhHHHH-HHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHH
Q 009536 395 SYLGMAISMLLVVGATSLPLDEDFSHNLSIL-GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLV 473 (532)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~ 473 (532)
+..+.++..+.+...... ..+...+. ..++.....+.+. +...++..+..+++.+++..|+.+...++|..++
T Consensus 295 ~~~l~~l~~l~~~~l~~~-----~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~ 368 (491)
T PRK11010 295 FGILQGVSNAGYWLLSIT-----DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYV 368 (491)
T ss_pred HHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 655545444333221110 01111111 1122111122222 2345667788899899999999999999999999
Q ss_pred HHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 474 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 474 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
+.+.|.+.|..||...|.+.+++.+++.++....
T Consensus 369 ~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 369 GPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888776666443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=237.76 Aligned_cols=331 Identities=16% Similarity=0.158 Sum_probs=236.8
Q ss_pred hccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHH
Q 009536 101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (532)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 180 (532)
......++.+|.+.+++|+ +..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+.+ .+++++.+
T Consensus 14 ~~~~~~~~~lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred CccccCcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 3346778999999999999 99999999999999999999999999999999999999999988888887 78899999
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch-hHHHHHhhHHHHHHHHH
Q 009536 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRTMLYIASLPGFILAL 259 (532)
Q Consensus 181 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-wr~~f~~~~~~~~~~~~ 259 (532)
++.|++.|++.+...+....++.|+++ ++|++++++++.+..+|..+++.+++.+.+..+. ||+.|.+.++..++..+
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988888889999986 5799999999999999999999998877665433 99998876665443322
Q ss_pred HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhh
Q 009536 260 GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQF 339 (532)
Q Consensus 260 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
.++++.++. + +++++......++.++++..+...+... ...
T Consensus 170 --~~~~~~~~~---~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 210 (355)
T TIGR00896 170 --AWIPQVRRR---V------------------------------AANQTTTRLTPVRIWRSPLAWQVTVFFG----LQS 210 (355)
T ss_pred --HHhhhhccc---c------------------------------CCCCCCCCCCCchhhcCHhHHHHHHHHH----HHH
Confidence 223332110 0 0000001123345566655443322222 222
Q ss_pred cchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcC-CchhhhhhHHHHHHHHHHHHHHhcCCCCc
Q 009536 340 AGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEG-RQKLLIGSYLGMAISMLLVVGATSLPLDE 416 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
........+.|.++++.+.+ ..+.......++.++++++.|++.||++ +|+.+..+..+.+++.+.+.+..
T Consensus 211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~------ 284 (355)
T TIGR00896 211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP------ 284 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh------
Confidence 23344556777777777665 4567777888999999999999999994 55566666666666655554421
Q ss_pred cchhhHHHHHHHHHHHHHhccc-cccccccccc-ccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009536 417 DFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPE-LSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 485 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 485 (532)
..... .... ..+++.+. .+.......+ ..++++++...++.+.+.+++.+++|.+.|.+.|+.|
T Consensus 285 --~~~~~-~~~~--l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 --MHGLW-AWAL--VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred --hhHHH-HHHH--HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 1122 22333332 3443344443 3445677899999999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=244.49 Aligned_cols=334 Identities=15% Similarity=0.191 Sum_probs=230.7
Q ss_pred hccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHH
Q 009536 101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (532)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 180 (532)
+...++.|.+|.+.+++|+ ++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus 5 ~~~~~~~p~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGV--SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred hHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 4556677999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009536 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (532)
Q Consensus 181 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 260 (532)
+++|+++|++.+...+...+++.|++++++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++.+++.++..+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888777 999999888877765444
Q ss_pred h-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhh
Q 009536 261 M-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQF 339 (532)
Q Consensus 261 ~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
. ++++|+++.. ++.+ ...+ +....+++.++++..+...+... ..+
T Consensus 162 ~~~~~~~~~~~~-~~~~--------------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~----~~~ 207 (377)
T PRK11102 162 VFFFIPETLPKE-RRQP--------------FHLR---------------TTIRNFASLFRHKRVLGYMLASG----FSF 207 (377)
T ss_pred HHHhCCccCccc-ccCC--------------CChH---------------HHHHHHHHHHcChHHHHHHHHHH----HHH
Confidence 3 4555543210 0000 0000 00112344555554433222211 112
Q ss_pred cchhhHHHhHHHHH-HHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCc
Q 009536 340 AGINGVLYFSSLTF-QDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE 416 (532)
Q Consensus 340 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
........+.|.++ +..+.+ +.+.......++.+++.++.+++.||+|+|+.+..+..+..+..+.+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (377)
T PRK11102 208 AGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD--- 284 (377)
T ss_pred HHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 22223333334443 334544 456777788889999999999999999999988877765444333322211000
Q ss_pred cchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHH-HHHHHHHHHH
Q 009536 417 DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFF 477 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~i~~~~~ 477 (532)
...+.......++..+.+ ...+.......|..| +.++++.++.+.... ++..+++.+.
T Consensus 285 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 285 -LGFWALVVGVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred -hhHHHHHHHHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111112222222222 122223345566666 679999999877654 4445555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=238.90 Aligned_cols=359 Identities=14% Similarity=0.053 Sum_probs=256.5
Q ss_pred HHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHH----HHhhHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF----QIDTIPLILG 167 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l----~~~~~~~~~~ 167 (532)
+.+..+...+......|.+|.+.+++|. +..++|++.+++.+...++++++|+++||+|||... ..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~--s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGL--GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 5566677777788899999999999999 999999999999999999999999999999985433 222222222
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 009536 168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML 247 (532)
Q Consensus 168 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f 247 (532)
..+..+++++.+++.|+++|.+.+...|...++..++ +++|+++.+....+.++|.+++|++++.+.+..+ ||..|
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f 161 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL 161 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence 2445678999999999999999988899988887665 4678999999999999999999999999999888 99999
Q ss_pred HhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHH
Q 009536 248 YIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (532)
++..+..++..+.. .++++++. +++. ++++.......++++|+|.++..
T Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~ 210 (382)
T TIGR00902 162 AILTAGLAFMLIGF-LIKPTIPP---KDAI---------------------------PEDESQGDSAFIALLKNPMNLRF 210 (382)
T ss_pred HHHHHHHHHHHHHH-HcCCCCCC---Cccc---------------------------cccccccchhHHHHHcChHHHHH
Confidence 88765533333332 33333210 0000 00000112235667777766555
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 405 (532)
.+...+.. ........+.+.++++.|.+ ..+.......++.+++.++.+++.||+++|+.+.++.++..+...+
T Consensus 211 l~~~~l~~----~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 211 LAAVCLIQ----GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 44333322 23444455667777777766 3466666778888899999999999999999999999888888877
Q ss_pred HHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 009536 406 VVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFS-VHWVCNFLVGLFFLDLVETF 484 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~~ 484 (532)
+.+.. +.+..+....+-...++. ..+....++.+. |++.++++.++++. ...+|..+++.+.|.++|..
T Consensus 287 ~~~~~--------~~~~~~~~q~l~g~~~~~-~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~ 356 (382)
T TIGR00902 287 IGAIE--------AFPLIFLLQILHCGTFAV-CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL 356 (382)
T ss_pred HHhHh--------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76521 112222222333333332 234455677777 88889999999874 56799999999999999999
Q ss_pred CcchhhHhHHHHHHHHHHh
Q 009536 485 GVAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 485 g~~~~~~~~~~~~~~~~~~ 503 (532)
|+ ..|.+.+++.+++.++
T Consensus 357 g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred cH-HHHHHHHHHHHHHHHH
Confidence 85 6677777776665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=239.74 Aligned_cols=351 Identities=15% Similarity=0.114 Sum_probs=243.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
.++.+.+..+..++..+......|.+|.+.+++|. ++.+.+++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNV--REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 44556666666667777888888999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
+++.+++.++++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.+.+..+ ||
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~ 162 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR 162 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence 99999999999999999999999999998888888899999999999999999999999999999999998888777 99
Q ss_pred HHHHhhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCc
Q 009536 245 TMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (532)
+.|++.++..++..+ ..++.||+++.. .+ +.+....+++.++++.
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------------------~~~~~~~~~~~~~~~~ 208 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRPAD---AR-------------------------------RTRVLASYRTLLSNRR 208 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCccc---cc-------------------------------hhHHHHHHHHHHcChH
Confidence 999998777665443 334556653210 00 0001123344556655
Q ss_pred chHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHH
Q 009536 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMA 400 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 400 (532)
.+...+..... +........+.+.++++ .+.+ ..++......++.+++..+.+++.||.+++.. .......
T Consensus 209 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~ 282 (394)
T PRK11652 209 FNCYLLMLIGT----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCL 282 (394)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 54433322221 11222223334445554 4554 33555556677778888888888888873222 2222222
Q ss_pred HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 401 ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
++.+.+....... ....+.......+...+.+ ...+....+..|..| ++++++.++.+....+|+.+++.+.+.+
T Consensus 283 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 283 LAGLLMWIPGWFG---VMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222222110000 0111112222222222222 234556666677776 4689999999999999999999998877
Q ss_pred HHh
Q 009536 481 VET 483 (532)
Q Consensus 481 ~~~ 483 (532)
.+.
T Consensus 358 ~~~ 360 (394)
T PRK11652 358 PQT 360 (394)
T ss_pred cCC
Confidence 554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=241.82 Aligned_cols=381 Identities=14% Similarity=0.022 Sum_probs=237.1
Q ss_pred HHHHHHHhhhhhhccccccchhHHH-HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
++.+.+..++..+..+...+.+|.. .+++|+ +..+.|++.+++.++..++++++|+++||+|||++++++..+.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3444455566666666667777655 555899 9999999999999999999999999999999999998877666554
Q ss_pred HHHHH---hhhc-----HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 168 AIISA---QAHS-----LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 168 ~~~~~---~a~~-----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
..... .++. +...++++++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 167 (420)
T PRK09528 90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence 43221 1111 1112223333343333333333333222 2 34578888999899999999999999988764
Q ss_pred cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhh
Q 009536 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL 319 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
+ |++.|++.++.+++..+..++.+++++......+. ..+++++.......+.+
T Consensus 168 -~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l 220 (420)
T PRK09528 168 -N-PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-------------------------LGANASAVSLKDALALL 220 (420)
T ss_pred -C-chHhHHHHHHHHHHHHHHHhcccccccchhhhccc-------------------------hhcccccccHHHHHHHc
Confidence 4 99999998888777666665554332210000000 00000111112334566
Q ss_pred cCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHH
Q 009536 320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYL 397 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 397 (532)
+++..+...+..................+...+..+.+.+ ..+.......++..++.++.|++.||+++|+.+..+..
T Consensus 221 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 300 (420)
T PRK09528 221 KLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGT 300 (420)
T ss_pred cCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 7776655443332222211111122233333333222322 33566666778888999999999999999999888888
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHH-HHHHHHHHHHHHHH
Q 009536 398 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGF-SFSVHWVCNFLVGL 475 (532)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~i~~~ 475 (532)
+.+++.+++.+. ...+.+.. .....+...+. .+....++.+.+|++.+++..+. .++...+|.++++.
T Consensus 301 l~~~~~~l~~~~---------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 301 IMAVRIIGSGFA---------TGPLEVSI-LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred HHHHHHHHHHhc---------ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 777776666541 11222222 22222222222 23344677788899999988766 67788899999999
Q ss_pred HHHHHHHhhCcchhhHhHHHHHHHHHHhhheeecc
Q 009536 476 FFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 476 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (532)
+.|.+.|..||+..|.+.+++.++..++.++..++
T Consensus 371 ~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 371 LAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998888877776665544443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=234.69 Aligned_cols=361 Identities=12% Similarity=0.054 Sum_probs=234.1
Q ss_pred HHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHH-HHHHHHHhhhccccccchhHHH-HHhhHHHHH
Q 009536 90 LIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTF-QIDTIPLIL 166 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~ 166 (532)
....+..++..+......|.++. +.+++|. +..+.|++.+.+.+ +..++.++.|+ +||+|||+.+ +.+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHA--RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence 34444567777777777787775 6788999 89999999876655 55566655555 9999999875 556666678
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccc--cchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR--GSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 167 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
+..+.+++++++.+++.+.+.|...+...+....++.|+.++++| +...++.+.+.++|.++||++++.+.+..+ ||
T Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~ 173 (393)
T PRK15011 95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FT 173 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hH
Confidence 888888999999887665555544567788888888888876655 344578888999999999999999988777 99
Q ss_pred HHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCc
Q 009536 245 TMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (532)
+.|++.++..++..+.. +++||.++. +++ . +++ .+...++++
T Consensus 174 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-------------------------~~~-------~~~~~~~~~ 216 (393)
T PRK15011 174 VMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL--A-------------------------TGT-------LEAPRRNRR 216 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc--c-------------------------ccc-------ccccccccc
Confidence 99999888777665444 446665320 000 0 000 000001111
Q ss_pred -chHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 324 -SRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
.+..+... ...+........+.|.++++ .+.+ +.+.......++.+++.++.|+++||+++|+.+..+....
T Consensus 217 ~~~~~~~~~----~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~ 292 (393)
T PRK15011 217 DTLLLFVIC----TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG 292 (393)
T ss_pred cHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 11111111 11112233334456666543 4554 3455555556677888999999999999998777665544
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD 479 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 479 (532)
.+.+..+... .+....+....+.....+.. .+....+..|..|+ .++++.++.+...++|..++|.+.|.
T Consensus 293 ~~~~~~~~~~--------~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~ 362 (393)
T PRK15011 293 VCFYAGMLMA--------HSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGI 362 (393)
T ss_pred HHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332220 11111111111111121111 12233556788876 49999999999999999999999999
Q ss_pred HHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 480 LVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 480 l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
+.|..|++..+.+.+++.+++.++.+
T Consensus 363 i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 363 VAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877777766665553
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=241.95 Aligned_cols=372 Identities=17% Similarity=0.163 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhhhhhhcccccc-chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMN-GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
+.++..+++..+....+...++ ..+..+.+|.+. ...+.+++.++|+++++++.+++|.|.||++..+.+....+++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~--~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKL--VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccch--hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 3344555555555555554332 333446688887 7888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC------C
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------D 238 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~ 238 (532)
++..++.....|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|++++..+. .
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 9999888889999999999999999999999999999999999999999999999999999999999988753 2
Q ss_pred CcchhHHHHHhhHHHHHHHH-HHhcccccChh--HHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHh--ccCCCcc
Q 009536 239 DPHWWRTMLYIASLPGFILA-LGMQFTVESPR--WLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKK--DGSDLDS 313 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~-~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 313 (532)
..+ |||.|++.+++.++.. +..+++|++|. ++..+++++-.. ++.+...+. .++.+..
T Consensus 202 ~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~----------------~~~~~~~~~~~~~~~~~~ 264 (495)
T KOG2533|consen 202 LAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVV----------------ERLRESPSGGIENKFKWK 264 (495)
T ss_pred cCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHH----------------HHHHhccCCCcccccCHH
Confidence 344 9999999999988765 45566888886 221111110000 011111111 1113455
Q ss_pred hhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc----
Q 009536 314 QWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKE---- 386 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~---- 386 (532)
.+++.+++|..|...+.. ++.....+.+.+++|.++.+ .+.+ ++..+.++..++++++.+++|+++||.
T Consensus 265 ~~~~a~~dp~vw~~~l~~----~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~ 340 (495)
T KOG2533|consen 265 GFKEALKDPGVWPFSLCY----FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF 340 (495)
T ss_pred HHHHHHhchhHHHHHHHH----HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence 677888888766554443 33344666788888998887 2343 567888899999999999999999994
Q ss_pred CCchhhhhhHHHHHH-HHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc-ccchhHHHHH
Q 009536 387 GRQKLLIGSYLGMAI-SMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR-TRGKIMGFSF 463 (532)
Q Consensus 387 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~g~~~ 463 (532)
.+|........+..+ +...+.. ..........++.+.++... .+......++....+ ++-+..+...
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i 410 (495)
T KOG2533|consen 341 ARRLLFIVFLCLYAIIGAISLLA----------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII 410 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence 444444333333222 2222222 11111222222222222222 244445555555443 3444444444
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhCcchhh
Q 009536 464 SVHWVCNFLVGLFFLDL-VETFGVAPVY 490 (532)
Q Consensus 464 ~~~~~g~~i~~~~~g~l-~~~~g~~~~~ 490 (532)
...+.++.++|.+.-.. ...+++...|
T Consensus 411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 411 DGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred cchhHHHHhhhhhcccccCcchhhhhHH
Confidence 44455555544443322 2334666666
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=237.14 Aligned_cols=373 Identities=14% Similarity=0.085 Sum_probs=248.4
Q ss_pred HHHHhhhhhhccccccchh-HHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccch-hHHHHHhhHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAI 169 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~ 169 (532)
+++..+.......+..|.+ +.+.+++|+ +..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHF--SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3444555566666664444 566777898 99999999999999999999999999999965 8888989999989998
Q ss_pred HHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhh--------hcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS--------EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 170 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
++.+.++++.+++.|++.|++.+...+...++.. |......|.+..| .+|.++++.+++.+.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~ 158 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS 158 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence 9999999999999999999987777766655432 2222234555555 3577777777776633323
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcC
Q 009536 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
|+. |++.++..++..+..+++||+|+. +++++. + .++ ......++++|+
T Consensus 159 -~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~-------------------~----~~~---~~~~~~~~~~k~ 207 (418)
T TIGR00889 159 -NIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKM-------------------S----IKV---MLGLDAFILFKN 207 (418)
T ss_pred -hHH-HHHHHHHHHHHHHHHhcCCCCCCC---cccccc-------------------C----HHH---HhhhhHHHHhcC
Confidence 554 445555555555556677776531 000000 0 000 001123456677
Q ss_pred CcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCC----------ChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchh
Q 009536 322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGI----------TDGALASLLVGVTNFAGALCASYLMDKEGRQKL 391 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 391 (532)
+.++..++..++... .......+.+.+.++.+. +..+.......+..+++.+..|++.||+|+|++
T Consensus 208 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~ 283 (418)
T TIGR00889 208 KRMAIFFFFSMLLGA----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV 283 (418)
T ss_pred CCeeeHHHHHHHHHh----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 766554444333322 122233444555555542 233666777778888999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHH-HHHHHH
Q 009536 392 LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVC 469 (532)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g 469 (532)
+..+.++.+++..++..... ............+..+.+.+ ..+....++.|.+|++.|++++|+.+ ....+|
T Consensus 284 l~~~~~~~~v~~~l~~~~~~------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg 357 (418)
T TIGR00889 284 MLLSLVAWALRFGFFAYGDP------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFG 357 (418)
T ss_pred HHHHHHHHHHHHHHHHHcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH
Confidence 99988888777655544100 01111222222222222222 23555677889999999999999997 567899
Q ss_pred HHHHHHHHHHHHHhh------CcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 470 NFLVGLFFLDLVETF------GVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 470 ~~i~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
.++||.+.|.+.|.. ||+..|.+.+++.++++++.+++.+++++
T Consensus 358 ~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 358 SLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999984 47888888888888887777777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=238.18 Aligned_cols=346 Identities=19% Similarity=0.194 Sum_probs=229.5
Q ss_pred HHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
.+..+++.+..........+.+|. +++++|+ +..+.+++.+++.+++.+++++.|+++||+|||+.++++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP 80 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCC--CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 345666677777788888999995 9999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh-cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC--------
Q 009536 168 AIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-------- 238 (532)
Q Consensus 168 ~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------- 238 (532)
.+++++++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 81 CLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999 99999999999999966 456678899999999999999999987777777777666654432
Q ss_pred --CcchhHHHHH-hhHHHHHHH-HHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcch
Q 009536 239 --DPHWWRTMLY-IASLPGFIL-ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (532)
Q Consensus 239 --~~~~wr~~f~-~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
..+ ||+.|+ ..++..++. .+...+.+|+|+... +.++.. ..+... ..+++....
T Consensus 160 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~-------------~~~~~~~~~ 217 (366)
T TIGR00886 160 PAHLA-WGWAFVIVPAGILLLPALLIFFVGADTPPGKP---ATGKLS-----FKGARW-------------SVGTGALGD 217 (366)
T ss_pred ccccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcccc---cchhcc-----cccccc-------------cccchhHHH
Confidence 224 999994 434444333 333444555543100 000000 000000 000000113
Q ss_pred hhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchh
Q 009536 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKL 391 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 391 (532)
..+.++++..+...+..... .........+.+.++++ .+.+ +.+.......+..++++++.|++.||+++|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 293 (366)
T TIGR00886 218 QLKVFRDRHTWILALLYSVT----FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK 293 (366)
T ss_pred HHHHHhccchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence 34556666554433332222 22233444556666654 3544 45666777788889999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHH
Q 009536 392 LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC 469 (532)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 469 (532)
+..+.....++..++..... ...+.........+.....+.+ .+..+....+..| +++|+++|+.+.+.++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 294 LLMSFLGVAMGAFLVVLGLV----SPLSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 77776665555554443211 0001111112222222222222 2345567778777 57999999999887765
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=229.74 Aligned_cols=353 Identities=15% Similarity=0.048 Sum_probs=242.3
Q ss_pred hhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchh----HHHHHhhHHHHHHHHHH
Q 009536 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR----RTFQIDTIPLILGAIIS 171 (532)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~ 171 (532)
.+......+.+.|.+|.+.+|+|. +..++|++.+++.++..++++++|+++||+||| +.+.++..+. ....+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~--s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGY--TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCC--CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 455556678888999999999999 999999999999999999999999999999984 3333222222 22334
Q ss_pred HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhH
Q 009536 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (532)
Q Consensus 172 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~ 251 (532)
..+++++.+++.|++.|++.+...+...+++.++ +++|+++.+....+.++|.++||++++++.++.+ ||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence 4468899999999999999998999888887776 4568899999999999999999999999998888 999999877
Q ss_pred HHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHH
Q 009536 252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG 331 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (532)
+..++..+...+.||+++ +++. ++..++...++++++|++..+......
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~---------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~ 214 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMP----QGES---------------------------RQQESAGWPAWKALLKEPTVWRFLLCV 214 (382)
T ss_pred HHHHHHHHHHHccCCCCC----cccc---------------------------ccccccccchHHHHHcChhHHHHHHHH
Confidence 655554444444443211 0000 000001123567788887766554443
Q ss_pred HHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHH
Q 009536 332 ALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA 409 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
++... .......+.+.+.++.+.+ ..+.......++.++..++.+++.||+++|+.+..+..+.+++.+++...
T Consensus 215 ~l~~~----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 215 SLLQG----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HHHHH----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 33322 2223334455666666665 34666666677888888999999999999999888888777776655441
Q ss_pred hcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhhCcch
Q 009536 410 TSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVCNFLVGLFFLDLVETFGVAP 488 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~g~~~ 488 (532)
.+.+..+...++...+++. ..+....+..+. +++++++..++.+ ....+|..++|.+.|.+.|..|+ .
T Consensus 291 --------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~ 359 (382)
T PRK11128 291 --------TALPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-G 359 (382)
T ss_pred --------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-H
Confidence 1222222222222222222 234444556665 5555788899886 44567778999999999999886 4
Q ss_pred hhHhHHHHHHHHH
Q 009536 489 VYAGFGGVSLLSA 501 (532)
Q Consensus 489 ~~~~~~~~~~~~~ 501 (532)
.++..+++.+++.
T Consensus 360 ~~~~~~~~~~~~~ 372 (382)
T PRK11128 360 VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 5655555554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=226.18 Aligned_cols=344 Identities=15% Similarity=0.095 Sum_probs=248.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhh
Q 009536 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV 198 (532)
Q Consensus 119 ~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 198 (532)
.+.+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++...++++++.++|++++++|.+||+|.++..++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 33467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhcCCcc-cccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCCh
Q 009536 199 PIYISEVAPTK-YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML 277 (532)
Q Consensus 199 ~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 277 (532)
.++++|.+|++ ||++++|+...+.++|..+||.+||.+.+..| .+.+|.+.++++++...+.+++.|..+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~-------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE-------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence 99999999965 57999999999999999999999999999998 999999999999998777777665421
Q ss_pred hHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcC
Q 009536 278 NDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG 357 (532)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (532)
.+++...+..++.+++++|..+.... ...+.+......-+.+...+.+++.
T Consensus 252 --------------------------~~~~~~~~~~~~~~Ll~dP~I~~~ag---ai~~~n~~lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 252 --------------------------MDPDSTEQGTPMWSLLMDPYILLIAG---AITFSNSSLAFLEPTLSLWMLETMF 302 (464)
T ss_pred --------------------------cCccccccCccHHHHHhCchHhhhhc---chhhccchHHHhCcccHHHHHHhcc
Confidence 01112233456777888886443222 1222222222222333333445554
Q ss_pred CC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhh--hhhHHHHHHHHHHHHHHhcCCCCccchh-hHHHHHHHHHHH
Q 009536 358 IT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLL--IGSYLGMAISMLLVVGATSLPLDEDFSH-NLSILGTLFYIF 432 (532)
Q Consensus 358 ~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (532)
.. +.++.++...+...++..+.|.+.||++.-+.+ ..+.+..++++....++. .... +.......+.+.
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~------~~~~L~vp~~~l~~~i~ 376 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT------SIAQLWVPNFGLGFGIG 376 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh------hHHHHhhhhHHHHHHHH
Confidence 22 457788888899999999999999999944333 333333333333222211 1111 111111111111
Q ss_pred HHhcccccccccccccccCcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 433 TFAIGAGPVTGLVIPELSSNR---TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.......|.. .+..+.-..+ ..|.++++......+|.++||.+.|.+++.+|+++...+.+...++..-++.++
T Consensus 377 ~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 377 LADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223433 2223332233 678999999999999999999999999999999999888888888776665443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=243.43 Aligned_cols=402 Identities=17% Similarity=0.168 Sum_probs=284.0
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
.|.+++...+......-....++...+.++++++. +..+++|+.++......+.+++.+.+.||||.|.+.+.|.++.
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~--s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~ 121 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGS--SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA 121 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCC--CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence 45556666566665555566677888999999998 7888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHH-HHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 165 ILGAIISAQAHSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
.++.++.+++++++++++. -++.|+|.|..+.....++..||++| |+.+.|+...+.++|.++-|.+...+.+..| |
T Consensus 122 ~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~ 199 (509)
T KOG2504|consen 122 ALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSKYG-W 199 (509)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHHhC-c
Confidence 9999999999999988775 69999999999999999999888766 9999999999999999999999999999998 9
Q ss_pred HHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHH-----------HcCCcchHH------HHHHHHHHHHh
Q 009536 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIAN-----------LWGESEINK------AIEEFQLVIKK 306 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~~~~ 306 (532)
|+.+++.+.+.+-.++....+.+.+.....+ .++..+.... ......... .....+...++
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDK 277 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcc
Confidence 9999998888876655554444321110000 0000000000 000000000 00000000000
Q ss_pred cc-CCCcch----hhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhh
Q 009536 307 DG-SDLDSQ----WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCA 379 (532)
Q Consensus 307 ~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 379 (532)
.. ...+.. ..++++++.+... .+...+....+.....+++.+..+.+.+ ++.....+.++..++++++.
T Consensus 278 ~~~~~~~~~~~~~d~~ll~~~~fl~~----~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~ 353 (509)
T KOG2504|consen 278 WRNSPLQAFLSMLDLSLLKDPKFLLL----ALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIIL 353 (509)
T ss_pred ccccchhhhhhhhhHHHHcCchHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhh
Confidence 00 011111 1466677544333 3333344446667777888888877776 45777888899999999999
Q ss_pred HhhhhhcCCc--hhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccc
Q 009536 380 SYLMDKEGRQ--KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRG 456 (532)
Q Consensus 380 g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 456 (532)
|++.|+...+ .+..++.++.+++...+.+. ... ..+.......++..+. ......++.|+.+.++..
T Consensus 354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---------~~~-~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~ 423 (509)
T KOG2504|consen 354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFA---------TTY-VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS 423 (509)
T ss_pred hhhcCccccchHHHHHHHHHHHHHHHHHHHHh---------ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc
Confidence 9999998743 34455555555555444331 222 3333333334444444 344446788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHHhhhe
Q 009536 457 KIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 457 ~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 506 (532)
.++|+...+..++..+||++.|.+.|..| |...|...+++.+++....++
T Consensus 424 ~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 424 NAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred hHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 99999999999999999999999999988 888898888888877765543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=228.99 Aligned_cols=376 Identities=12% Similarity=0.025 Sum_probs=244.8
Q ss_pred HHHHHHHhhhhhhccccccchhHHH-HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
++.+....++.......+.|.+|.+ .+++|. +..+.|++.+++.++..++++++|+++||+|||+.++.++...+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4455566677777777788888765 556898 9999999999999999999999999999999999999887776654
Q ss_pred HHHHH---hh-----hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 168 AIISA---QA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 168 ~~~~~---~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
..... +. +.+..+++.|++.|++.+...+....+..|.. +++++..+......++|.++||.+++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 159 (396)
T TIGR00882 82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI 159 (396)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc
Confidence 43321 11 12334566788899988888888887777643 3345677888888899999999999988654
Q ss_pred cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhh
Q 009536 240 PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL 319 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
+ ||+.|++.+++.++..+..++.+++++. ++ +.. + ..+.++.+....+.++++
T Consensus 160 -~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~-----------------~--~~~~~~~~~~~~~~~~~l 212 (396)
T TIGR00882 160 -D-PQIVFWLGSGFALILMLLLMFAKPKAPS--SA----TVA-----------------N--ALGANASAFSLKLALELF 212 (396)
T ss_pred -C-chHHHHHHHHHHHHHHHHHHHhCCCCch--hh----hhh-----------------c--ccccccCCCCHHHHHHHH
Confidence 5 9999999888887766555443333210 00 000 0 000001111123456777
Q ss_pred cCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHH
Q 009536 320 EEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYL 397 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 397 (532)
+++..+...+..................|...++.+.+.+ ..+.......+...++.+..+++.||+++|+.+.++..
T Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~ 292 (396)
T TIGR00882 213 RQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGT 292 (396)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 7776554433222221111111112223333322211222 33556666677788888999999999999999888887
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHH-HHHHHHHHHHHHHH
Q 009536 398 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGF-SFSVHWVCNFLVGL 475 (532)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~i~~~ 475 (532)
+.++...+.... .+.+..... ....+.+... ......+..+..|++.++++.+. .+....+|+++++.
T Consensus 293 l~~l~~~~~~~~--------~~~~~~~~~--~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~ 362 (396)
T TIGR00882 293 IMSVRIIGSSFA--------TTALEVVIL--KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST 362 (396)
T ss_pred HHHHHHHHHHhc--------CChHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence 777766554431 111222222 2222222111 12233455666788888887766 67889999999999
Q ss_pred HHHHHHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 476 FFLDLVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 476 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
+.|.+.|..|+...|.+.+++.++..+...
T Consensus 363 l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 363 LAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888777766543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=229.88 Aligned_cols=366 Identities=15% Similarity=0.086 Sum_probs=248.1
Q ss_pred HHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-----chhH-HHHHhhHHHHH
Q 009536 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRR-TFQIDTIPLIL 166 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~~~~~ 166 (532)
...++..+...+.....+|.+.++.|+ +..++|++..+... .+..+++|+++||+ |||| .++++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGL--DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 344567778888888999999999999 99999999777765 59999999999999 8765 78888888888
Q ss_pred HHHHHHhh---hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc-ch
Q 009536 167 GAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-HW 242 (532)
Q Consensus 167 ~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~ 242 (532)
+..+.++. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+.. +
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g- 159 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG- 159 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-
Confidence 88887776 357788888888899999999999999999999999999999999999999999999988887753 6
Q ss_pred hHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 243 WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 243 wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
||..|++.++..++..+..++.+|+++. +++.++. . ++....+++++++|
T Consensus 160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~--------------------~-------~~~~~~~~~l~~~~ 209 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSL--------------------G-------EAVVGPLRDFFSRR 209 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchh--------------------H-------HHHHHHHHHHHhCc
Confidence 9999999888777665555556654321 0000000 0 00112456677787
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh--HHHHHHHH-HHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVG-VTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
.++..+....+......... ....+.+.++.|.+.. ++.....+ ++.+++.++.+++.||+++|+.+..+..+.
T Consensus 210 ~~~~~l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~ 286 (402)
T PRK11902 210 GAWALLLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQ 286 (402)
T ss_pred CHHHHHHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 76665544333322211111 1222334445666543 44443333 457889999999999999998877666665
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHH--HHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLF--YIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 476 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~ 476 (532)
.+..+.+......+ .+.+.......+ +..+...+ .......++.+.+|.+ ..++.+....++..+++.+
T Consensus 287 ~l~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 287 AVSNLGYWVLAVTP----KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPT 358 (402)
T ss_pred HHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHH
Confidence 55544332211110 111111111111 11222221 1234445556665544 4566666677888877889
Q ss_pred HHHHHHhhCcchhhHhHHHHHHHHHHhh
Q 009536 477 FLDLVETFGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 477 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 504 (532)
.|.+.|..||...|.+.+.+++++.++.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9999999999998988887777766554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=256.86 Aligned_cols=366 Identities=16% Similarity=0.046 Sum_probs=241.2
Q ss_pred HHhhhhhhcc-ccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHH
Q 009536 94 MSNFLFGYHI-GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA 172 (532)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 172 (532)
++.++..+.. .......+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~ 95 (1146)
T PRK08633 16 LTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIV 95 (1146)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 333444556667777744556689999999999999999999999999999999999877666555544
Q ss_pred ---hhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC--------cc
Q 009536 173 ---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD--------PH 241 (532)
Q Consensus 173 ---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~~ 241 (532)
.+++++.++++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++... .+
T Consensus 96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 96 LAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999988765 23
Q ss_pred hhHHHHHhhHHH-HHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhc
Q 009536 242 WWRTMLYIASLP-GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE 320 (532)
Q Consensus 242 ~wr~~f~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
+|++.+.+.++. .++.+++.+.+++.|+....+.+... .. ........++.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---------------~~~~~~~~~~~l~~ 230 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK----------YL---------------FPKLLWRNLKLLRS 230 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc----------cc---------------cHHHHHHHHHHHhc
Confidence 355555443333 33344445556766532111000000 00 00000123445566
Q ss_pred CCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC---hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhH
Q 009536 321 EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT---DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSY 396 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 396 (532)
++..+..++...+..+ .......+.+.++. ..+.+ ..++......++.+++.++.+++.||+++++.+.++.
T Consensus 231 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~ 306 (1146)
T PRK08633 231 DRVLWLAIIGLSYFWF----ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA 306 (1146)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence 6655544333333222 22223334444443 34544 3467777788899999999999999999988887777
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHH
Q 009536 397 LGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 475 (532)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 475 (532)
++.+++.+++.+. ... ....+..+..+++.+ ..+...+++.+..|++.||+++|+.+++.++|.++++.
T Consensus 307 ~~~~~~~~~~~~~---------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~ 376 (1146)
T PRK08633 307 LGLALSLFLLPTA---------PSL-ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLA 376 (1146)
T ss_pred HHHHHHHHHHHHh---------hhH-HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 7776666655541 112 222222222333333 23445678889999999999999999999999988877
Q ss_pred HHHHHHHhhC--cchhhHhHHHHHHH
Q 009536 476 FFLDLVETFG--VAPVYAGFGGVSLL 499 (532)
Q Consensus 476 ~~g~l~~~~g--~~~~~~~~~~~~~~ 499 (532)
+.+.+.. .+ +...+++.+.+.++
T Consensus 377 ~~~~l~~-~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 377 LTTLFSG-LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 7665543 33 33344444444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=228.50 Aligned_cols=372 Identities=20% Similarity=0.156 Sum_probs=271.5
Q ss_pred HHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
.+..+.++.++..++..+....++-+..+..- |+...+++..+..+...+.++++|.++||++||++++.+.++.++.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~--S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTG--SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 35556677778888888888888877777654 8999999999999999999999999999999999999999888766
Q ss_pred HHHHHhh-----hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch
Q 009536 168 AIISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (532)
Q Consensus 168 ~~~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 242 (532)
.++.++. .+.+.+++.-++.|++.+...|+.++++.|..|+++...++++.+...++..++||.++|.+....|
T Consensus 89 ~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G- 167 (524)
T PF05977_consen 89 ALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG- 167 (524)
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence 5555432 4788899999999999999999999999999999999999999999999999999999999988777
Q ss_pred hHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCC
Q 009536 243 WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP 322 (532)
Q Consensus 243 wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
-.+.|++.++..++.++.....+++++ .+... . +.-.+..+..++.+.+++
T Consensus 168 ~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~--~------------------------e~~~~~l~~G~ryv~~~~ 218 (524)
T PF05977_consen 168 AAAAFLINALSFLISILALLRWKPPPP---PSSLP--R------------------------ERFFSALREGLRYVRSSP 218 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccc---ccccc--h------------------------hhhhhhHHHHHHHHhcch
Confidence 788888877766555444433332211 00000 0 000011122344444455
Q ss_pred cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHH
Q 009536 323 HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGM 399 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 399 (532)
..+..++...++.+ ........+|.+.++ .+.+ ..++.....+++.++|.++.+++.+|+++++++..+.++.
T Consensus 219 ~l~~~l~~~~~~~l----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 219 PLRSVLLRSFLFNL----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLF 294 (524)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence 54443333222222 122233345666544 3433 4477888899999999999999999999998888888877
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 400 AISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
+++++.+.+ ....++....++..+.+. .......+..++..|++.||+++++++++...+..+|..+.|
T Consensus 295 a~~~~~lal----------~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G 364 (524)
T PF05977_consen 295 ALALLLLAL----------SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG 364 (524)
T ss_pred HHHHHHHhc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666 222222233333333332 233455677889999999999999999999999999999999
Q ss_pred HHHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 479 DLVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
.+.+..|....+.+.++..+++.++.+
T Consensus 365 ~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 365 FLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777766655555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=256.43 Aligned_cols=344 Identities=16% Similarity=0.053 Sum_probs=231.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH---hhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhH
Q 009536 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI---DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200 (532)
Q Consensus 124 ~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~ 200 (532)
...++..+++.+++.++++++|+++||+|||+++.. ..++..+..+.+...+++++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567889999999999999999999999999997643 22333333333344589999999999999999999999999
Q ss_pred hhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHH
Q 009536 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDA 280 (532)
Q Consensus 201 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 280 (532)
++.+++++++|++++++.+++.++|.++||++++++....+ |++.|++.++..++.+++.+++++++.. .++...+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR 208 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc
Confidence 99999999999999999999999999999999999988877 9999966666666666666666655320 00000000
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC
Q 009536 281 KAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT 359 (532)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 359 (532)
... ......++.+.+++.++...+...+..+ .......+.|.++++. +.+
T Consensus 209 ------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~ 259 (1140)
T PRK06814 209 ------------------NII-------RSTITLLKYAKADKRIWLAILGISWFWL----VGAVVLSQLPLLAKETLGGD 259 (1140)
T ss_pred ------------------chH-------HHHHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHcCCc
Confidence 000 0001235556666665554444333322 2233344566666543 443
Q ss_pred --hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCC------------CCccchhhHHHH
Q 009536 360 --DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP------------LDEDFSHNLSIL 425 (532)
Q Consensus 360 --~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 425 (532)
..++.....+++.+++.++.|++.|+..+++.+..+.++.+++.+.+.+..... .....+.+ . +
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 337 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW-R-I 337 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH-H-H
Confidence 457778888999999999999999887777666555555554444333310000 00001112 2 2
Q ss_pred HHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhhHhHHHHHHHHH
Q 009536 426 GTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 426 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~ 501 (532)
.+..+..+++.+ ..+...+++.+..|++.+|+++|+.+++.+++..+++.+.+.+.+. .++...+++.+++.++.+
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 222222233322 3345678889999999999999999999999999999999988753 345555554444433333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=209.38 Aligned_cols=362 Identities=17% Similarity=0.144 Sum_probs=276.0
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
++.++...++.++......+.+|.+++.|++ +..+.+++...++.++.+.+++.|++.+|+|+|+.+++|+.++++++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~l--s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDL--TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5666667788899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHH---hhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC------
Q 009536 169 IISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------ 239 (532)
Q Consensus 169 ~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------ 239 (532)
.++. ...+|..++++-++.|.|.+...++++.++....++++-.+.+++.+..+++|.+++|++++.+...
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9985 4578899999999999999999999999999999998899999999999999999999999988762
Q ss_pred ------------cchhHHHHHhhHHHHHHHHHHhccc--ccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 009536 240 ------------PHWWRTMLYIASLPGFILALGMQFT--VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK 305 (532)
Q Consensus 240 ------------~~~wr~~f~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (532)
...||++|...+...+++.+..... |+.+. ...
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------~~~ 219 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------AAP 219 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc---------------------------------ccc
Confidence 1128888888877777666555443 33211 000
Q ss_pred hccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhh
Q 009536 306 KDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYL 382 (532)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l 382 (532)
+..+.......+++++++.+...+..+++.. .......+++.++.+ .+.+ ++......+..+.++|++++-++
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l 295 (422)
T COG0738 220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL 295 (422)
T ss_pred cccccccchHHHHHhChHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111256778888887766655555544 344455566666666 4444 55777788899999999999999
Q ss_pred hhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHH
Q 009536 383 MDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS 462 (532)
Q Consensus 383 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 462 (532)
..|+...+.+....++..+.++...+. +. ...+...+..+.+.....|..++...+..| + .....|..
T Consensus 296 m~~~~~~k~Laf~a~~~ill~~~~~l~---------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~ 363 (422)
T COG0738 296 MSRIKPEKYLAFYALIAILLLLAVALI---------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGL 363 (422)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHh---------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-ccccccee
Confidence 999999998887776666655555552 22 333333444444455567888888888888 3 33444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHH
Q 009536 463 FSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 463 ~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 501 (532)
..+.-+|+++.|++.|++.|..|....+.....+|.+..
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 567779999999999999999997777664444444444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=226.65 Aligned_cols=411 Identities=12% Similarity=0.036 Sum_probs=249.0
Q ss_pred HHHHHHHHHhhhhhhccccccchh-HHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPL 164 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~ 164 (532)
+.++.+++..+...+......+.+ ..+.+++|. +..+.+++.+.|.....+..+++|+++|| +|||++++++.+++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~--~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGF--SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 335555566666666665444444 566788998 88888999999998999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhcHHH-HHHHHHHHhhhhhhhhhhhhHhhhhcCCcc--cccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 165 ILGAIISAQAHSLDE-MLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~-l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
+++.+.++++.+... ++++|+++|+|.|...+...+++.|.+|++ +|++++++++.+.++|.++||.+++++.++.+
T Consensus 92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999876554 558999999999999999999999999877 45889999999999999999999999999888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccccChhHHh--hcCChhHHHHHHH------------HHcCCcchHHHHHHHH------
Q 009536 242 WWRTMLYIASLPGFILALGMQFTVESPRWLC--KGGMLNDAKAVIA------------NLWGESEINKAIEEFQ------ 301 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~------ 301 (532)
||+.|++.++..++.++...+.++..+... .+++..+...... ................
T Consensus 172 -w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 250 (489)
T PRK10207 172 -YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVT 250 (489)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999865533333333333321111000 0010011101000 0000000000000000
Q ss_pred -HHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC------hhHHHHHHHHHHHH
Q 009536 302 -LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT------DGALASLLVGVTNF 373 (532)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~ 373 (532)
.-..++.+. .+.+|++.+....+ ++.....+..+.......+.+.++ .+.. ..........+..+
T Consensus 251 ~~f~~~~~~~-----~~~~r~r~~~~~~l--~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ii 323 (489)
T PRK10207 251 IIFFREAFKL-----DKTGRNKMFVAFVL--MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVV 323 (489)
T ss_pred HHHHHHHhcC-----CHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHH
Confidence 000001111 12333332222111 111122222222332334444442 2221 22334444455666
Q ss_pred HHhhhhHhhhhhcCCchh-------hhhhHHHHHHHHHHHHHHhc-CCCCccchhhHHHHHHHHHHHHHhcccccccccc
Q 009536 374 AGALCASYLMDKEGRQKL-------LIGSYLGMAISMLLVVGATS-LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV 445 (532)
Q Consensus 374 ~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (532)
+..++.+++.||+++|+. +.++.++.+++++.+..... ........+.+++....++.........+.....
T Consensus 324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~ 403 (489)
T PRK10207 324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAM 403 (489)
T ss_pred HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777888999999998873 66777777777654432111 1101111222333333333222223345666788
Q ss_pred cccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----------hhCcchhhHhHHHHHHHHHHhhhee
Q 009536 446 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE----------TFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 446 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
+.+..|++.+|.++|+.+...++|+.++..+...... ...+...|...++..++..++.++.
T Consensus 404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999888764421 1124556666666666655555443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=216.47 Aligned_cols=375 Identities=16% Similarity=0.127 Sum_probs=233.6
Q ss_pred HHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (532)
.++......+.....+..++.+..|+|- .....|+.+.+.++..++.++.|+++|.||||.+++.+.++..+|.+++
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~---~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~ 125 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG---SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC 125 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC---CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh
Confidence 3333344455566667788999999984 4567899999999999999999999999999999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhH
Q 009536 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251 (532)
Q Consensus 172 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~ 251 (532)
+.++|...++++..+.|+|.|.... ....++|..|.|.|....++......+....++.++..+..+.+ |||.|++.+
T Consensus 126 atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~ 203 (599)
T PF06609_consen 126 ATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFI 203 (599)
T ss_pred hcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHH
Confidence 9999999999999999999887765 45568999999999887777766655555567777766665556 999999998
Q ss_pred HHHHHHHHHhcccccChhHHhhcCCh---hHHHHHHHHH------------------cCCc-c---hHHHHHHH------
Q 009536 252 LPGFILALGMQFTVESPRWLCKGGML---NDAKAVIANL------------------WGES-E---INKAIEEF------ 300 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~------------------~~~~-~---~~~~~~~~------ 300 (532)
+...+.++..+++..+|++-..+++. .+..+.++.+ .+.. . ........
T Consensus 204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~ 283 (599)
T PF06609_consen 204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL 283 (599)
T ss_pred HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH
Confidence 88777655544444444433222221 1111111111 0100 0 00000000
Q ss_pred --HHHHHhc--cCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC-----hhHHHHHHHHH
Q 009536 301 --QLVIKKD--GSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT-----DGALASLLVGV 370 (532)
Q Consensus 301 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~ 370 (532)
.-...+. ..+...-..+++++++. +...++..+.....+.....+.|..... ++.+ ..++.....++
T Consensus 284 Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~---~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~f 360 (599)
T PF06609_consen 284 LVAFVVWEWFGAPKDPLFPHRLFKDRRG---FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGF 360 (599)
T ss_pred HHHHHHhhhhccCCCCcCCHHHhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHH
Confidence 0000111 11122234456665432 2222222222222223333333333222 2222 34567777888
Q ss_pred HHHHHhhhhHhhhhhcCCchhh-hhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccc
Q 009536 371 TNFAGALCASYLMDKEGRQKLL-IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPEL 449 (532)
Q Consensus 371 ~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (532)
+..++.++.|.+..++++-|.. +++..++.+++.++..... .+....+....+...+.+... .......+-.
T Consensus 361 g~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~------~n~~~~i~~~~l~g~giG~~~-~~~~~~~ql~ 433 (599)
T PF06609_consen 361 GSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP------DNKNAAIAFLVLAGFGIGGIL-VPAIVIAQLI 433 (599)
T ss_pred HHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC------CCcchHHHHHHHHHHhHHHHH-HHHHHeeEee
Confidence 8888989999999988765544 4555555555555444211 122222222222222222222 2234555567
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 450 SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
.|++.-|++.|+..+++.+|+.+|..+...+.
T Consensus 434 ~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 434 VPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred eCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 79999999999999999999999998886655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=221.77 Aligned_cols=412 Identities=13% Similarity=0.073 Sum_probs=258.4
Q ss_pred HHHHHHHhhhhhhccccccchhHHHH-Hh--hCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIA-KE--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPL 164 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~ 164 (532)
+..+.+..+...+......+.+|.+. ++ +|+ +..+.+++.+.+.++..++++++|+++|| +|||++++++.++.
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~--s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGF--SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 45555666777777777777777664 44 788 89999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCccc---ccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
+++.++.+++++++.++++|++.|+|.|...+...++++|++|+++ |++++++++.+.++|.++||++++++.+..+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998764 8889999999999999999999999988777
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc----cChhHHhhcCChhH--HHHHHH-----------H-HcCCcchHHHHH-----
Q 009536 242 WWRTMLYIASLPGFILALGMQFTV----ESPRWLCKGGMLND--AKAVIA-----------N-LWGESEINKAIE----- 298 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~--~~~~~~-----------~-~~~~~~~~~~~~----- 298 (532)
||+.|++.++..++..+...+.+ +.|+.. .+.+.++ ..+... . ....+.......
T Consensus 170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999997765554443333322 111100 0000000 000000 0 000000000000
Q ss_pred --HHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC------hhHHHHHHHH
Q 009536 299 --EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT------DGALASLLVG 369 (532)
Q Consensus 299 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~ 369 (532)
..........++ .....-+++ .. .++...+.....+..+.......+.+.++ .+.+ ..++...+..
T Consensus 248 ~~~~~~~~~~~~~~---~~~~~~~~~-~~-~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~ 322 (475)
T TIGR00924 248 LAVIIFFFRLAFKP---RLDAVARNK-MY-AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNP 322 (475)
T ss_pred HHHHHHHHHHHHhc---cCCHHHHhH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhH
Confidence 000000000000 000011111 11 12222222222223333333333433332 2211 2456666666
Q ss_pred HHHHHHhhhhHhhhhhcCC-----chhh--hhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccc
Q 009536 370 VTNFAGALCASYLMDKEGR-----QKLL--IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 442 (532)
Q Consensus 370 ~~~~~~~~~~g~l~d~~g~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (532)
+..++..++..++..+.+| +... .++.++.++++..+.+...........+.++++...++.........|..
T Consensus 323 ~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~ 402 (475)
T TIGR00924 323 FWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLG 402 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHH
Confidence 6666666554443333333 3333 56777777777666543111110011233333333444344444456888
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 443 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
..++.+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus 403 ~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 403 LSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999887777767777777777777776666554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=223.81 Aligned_cols=333 Identities=17% Similarity=0.148 Sum_probs=224.0
Q ss_pred hhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc----cchh-HHHHHhhHHHHHHHHHHHhhhc------H
Q 009536 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCR-RTFQIDTIPLILGAIISAQAHS------L 177 (532)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~ 177 (532)
..+.+.+++|+ ++.+.|++.++..+..++..++.|+++|| +||| +.++.+..+++++.+++...++ +
T Consensus 22 l~~~~~~~~g~--s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDVLGL--SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHccCC--CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 44677788999 99999999999999999999999999998 6774 4677888888888888877654 4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcC-CcccccchhhHhHHHHHHHHHHHHHhcCCCC-------CCcchhHHHHHh
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-------DDPHWWRTMLYI 249 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~~~wr~~f~~ 249 (532)
..+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+. +..+ ||+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i 178 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence 56777889999998888888888888887 4688999999988888888766655543332 2335 9999999
Q ss_pred hHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHH
Q 009536 250 ASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (532)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
.++++++..+.. +..+|+++.. +. .++++.+....++.+++++.++...
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~~----~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSEI----PK--------------------------NIEKKLSLKQIFKALFKNDQLLILC 228 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCCC----Cc--------------------------ccccCCCHHHHHHHHhCCHHHHHHH
Confidence 888877765544 4455543100 00 0000111123445666676655544
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHHc-C-CChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQDV-G-ITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
....+..+... ....+.+.+.+.. + ....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+
T Consensus 229 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 229 LAYLFYNLAFN----IKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHHHH----HHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 43333322221 1112222222211 2 1233455556678889999999999999999999988887777776665
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccC-------ccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
.+.. ... ..........+++.+ ..+...++.+|..+ ++.+|.+.|+.+.+..+|..+++.+.|
T Consensus 305 ~~~~--------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 305 FFAG--------SNL-PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHcc--------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4411 111 122222222223222 23555666666654 556799999999999999999999999
Q ss_pred HHHHhhCcc
Q 009536 479 DLVETFGVA 487 (532)
Q Consensus 479 ~l~~~~g~~ 487 (532)
.+.+..||.
T Consensus 376 ~ll~~~G~~ 384 (437)
T TIGR00792 376 LILGIIGYV 384 (437)
T ss_pred HHHHHcCCC
Confidence 999988864
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=204.50 Aligned_cols=353 Identities=14% Similarity=0.076 Sum_probs=215.5
Q ss_pred ccccchhHHHHHhhCC----CC--ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcH
Q 009536 104 GVMNGPIVSIAKELGF----EG--NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL 177 (532)
Q Consensus 104 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~ 177 (532)
+...+....+.++|+. ++ +....|.+.+.|++.+.+.++.+|.++||+|||+++++|++..++..++.+++.|+
T Consensus 42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F 121 (451)
T KOG2615|consen 42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF 121 (451)
T ss_pred cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555543 12 45567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC---CcchhHHH--HHhhHH
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---DPHWWRTM--LYIASL 252 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~~wr~~--f~~~~~ 252 (532)
..+++.|++.|+..| ......++++|.+++|+|++.++.++..+++|.++||.+|+++.. ..+.+... -++..+
T Consensus 122 ~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i 200 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFI 200 (451)
T ss_pred HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHH
Confidence 777777999999987 667788899999999999999999999999999999999999987 23311111 122222
Q ss_pred HHHH-HHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHH
Q 009536 253 PGFI-LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG 331 (532)
Q Consensus 253 ~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (532)
+... .....+++||+-+. +++.++.. +..+...+. .+..+..+..-....+++.........
T Consensus 201 ~a~~~v~~~~~~lpETL~~---rk~~~~~~----------~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~ 263 (451)
T KOG2615|consen 201 LAAGDVTFFPWFLPETLPL---RKRNDEHS----------TLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVL 263 (451)
T ss_pred HHHHHHHHHHHhCCccccc---hhhccccc----------chhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHH
Confidence 2333 34455677877321 11111100 000000000 000000011111223333322211111
Q ss_pred ---HHHHHhhhcchhhHHHhHHHHH-HHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcC--CchhhhhhHHHHHHHH
Q 009536 332 ---ALFLLQQFAGINGVLYFSSLTF-QDVGIT--DGALASLLVGVTNFAGALCASYLMDKEG--RQKLLIGSYLGMAISM 403 (532)
Q Consensus 332 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~ 403 (532)
.+..+.+...+..+.++...+. ++.+.+ +.+-+....++.+.+......+..+|.+ .+..+..+..++.-.+
T Consensus 264 ~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~ 343 (451)
T KOG2615|consen 264 RIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAF 343 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Confidence 2222222223333333333331 334444 4466666666766666666666666655 3334444444444344
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
+++... .....+.....+-...+....+....++....|+++||+++|+..+...++.++||.+.|.+...
T Consensus 344 llls~~---------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 344 LLLSLA---------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHhcc---------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 443331 11112222222222222223355667778889999999999999999999999999999877654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=191.75 Aligned_cols=366 Identities=18% Similarity=0.202 Sum_probs=275.4
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 165 (532)
+..+..+.+..+..--..+..+|.++++++|+|+ +.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gl--s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGL--SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444455556668899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009536 166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (532)
Q Consensus 166 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~ 245 (532)
++.++=... +.+.++.+-.+.|.|.+...+..+.++.+.||++ -+..+++|....++|..+++.+...+.++.++||.
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 999998887 7888999999999999999999999999999977 89999999999999999999999888887755999
Q ss_pred HHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcch
Q 009536 246 MLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325 (532)
Q Consensus 246 ~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (532)
...+-+.++++.++.++.-...++ ....+.+..+...++++|.-|
T Consensus 167 aL~~WAl~allAl~~WlPq~~r~~-----------------------------------~~~~~~~~~~~~~vw~~~~aW 211 (395)
T COG2807 167 ALGFWALLALLALLIWLPQALREQ-----------------------------------AASIATKLVSVRKVWRSPLAW 211 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhccccc-----------------------------------ccccccccccccccccCchhH
Confidence 999999999888877754321110 011111122334567777655
Q ss_pred HHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcC-CchhhhhhHHHHHHH
Q 009536 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEG-RQKLLIGSYLGMAIS 402 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~ 402 (532)
... +++..+...++....++|.++.+.|.+ +++.......+..++..+....+.+|.. +|+..+....++.++
T Consensus 212 ~vt----LfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 212 QVT----LFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred HHH----HHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 444 444444556777888999999999887 5588888899999999999999999754 555666666666667
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccc-cccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 403 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIP-ELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
...+.+.+ ....+..++ ..+++ .+..+.....+. +...++..+...|+.+.++++-.+.||.+.|++
T Consensus 288 ~~G~~~~P---------~~~~~lw~~--llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l 356 (395)
T COG2807 288 LVGLLLAP---------GQLPILWAL--LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL 356 (395)
T ss_pred HHHHHHhh---------hhHHHHHHH--HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence 66665532 112222222 22322 223444444443 344566788999999999999999999999999
Q ss_pred HHhhC-cchhhHhHHHHHHHHHHhhh
Q 009536 481 VETFG-VAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 481 ~~~~g-~~~~~~~~~~~~~~~~~~~~ 505 (532)
.|..| |...+..++.+.++..+..+
T Consensus 357 hDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 357 HDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 99988 55555555555554444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=216.39 Aligned_cols=330 Identities=15% Similarity=0.106 Sum_probs=220.5
Q ss_pred cccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-----chhHH-HHHhhHHHHHHHHHHHhh--
Q 009536 103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRT-FQIDTIPLILGAIISAQA-- 174 (532)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~a-- 174 (532)
....++.+|.+.+|+|+ +..+.|+.... .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.
T Consensus 4 ~~~~~~~~~~~~~~~g~--s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNV--SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred chhHHhHHHHHHHHcCC--CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 45567789999999999 89999999755 455555 99999999998 89887 467777888887777777
Q ss_pred -hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch-------hHHH
Q 009536 175 -HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-------WRTM 246 (532)
Q Consensus 175 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-------wr~~ 246 (532)
.+++.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+....+. ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 46667778888899999999999999999999999999999999999999999999999877765442 9999
Q ss_pred HHhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcch
Q 009536 247 LYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325 (532)
Q Consensus 247 f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (532)
|++.++..++..+..++ .+|+++. +.. + +++ . + +.+..++++++++..+
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~--~--------------~~~----~---~----~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQED---ASV--P--------------KPL----T---Q----AVLKPIREFFQRKNMI 209 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcc---ccc--c--------------hhH----H---H----HHHHHHHHHHHhcCch
Confidence 99988877776655554 3443210 000 0 000 0 0 0012344555555422
Q ss_pred HHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh--HHHHHHHH-HHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVG-VTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
..........+ ..........+.+.++++.+.+.. +......+ +..+++.+++|++.||+|+|+.+..+.++.++.
T Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 210 QALLLLLLIVL-YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22222222222 222334445566666666666543 44444444 567889999999999999999888877777666
Q ss_pred HHHHHHHhcCCC-CccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHH
Q 009536 403 MLLVVGATSLPL-DEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHW 467 (532)
Q Consensus 403 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 467 (532)
..++.+...... ........+.+....+..+++.+ ..+...++..|.+|+++||+.+|+.+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 289 NAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 555444211000 00000111222222323233322 456678899999999999999999887654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=210.48 Aligned_cols=358 Identities=10% Similarity=0.046 Sum_probs=223.5
Q ss_pred ccccccchhHHHHHhhCCCCChhH-HHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHH
Q 009536 102 HIGVMNGPIVSIAKELGFEGNPIL-EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (532)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 180 (532)
.+...+.+.|.+.+|+|+ +..+ .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+
T Consensus 41 ~R~n~s~a~p~L~~elgl--T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNF--TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred hhchHHHHHHHHHHHcCC--CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778999999999 8888 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh---HHHHHHH
Q 009536 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA---SLPGFIL 257 (532)
Q Consensus 181 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~---~~~~~~~ 257 (532)
.+.|++.|++.|... +...++..|+|++||+++.++..++..+|.+++++++++ ....+ ||+.+.+. .....+.
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999998 44556 88766543 3333445
Q ss_pred HHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHH-HHHH-HHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHH
Q 009536 258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINK-AIEE-FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFL 335 (532)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (532)
++..+++|..++-+.-+++.+.......+.......+. ...+ .+......-......+++..+++. ++...+.+
T Consensus 196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~----vl~WSlWw 271 (511)
T TIGR00806 196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ----LLLWSLWW 271 (511)
T ss_pred HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc----hhhhhHHH
Confidence 56667777555433222111000000000000000000 0000 000000000001112233344443 22223334
Q ss_pred HhhhcchhhHHHhHHHHHHHcCCCh---hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcC
Q 009536 336 LQQFAGINGVLYFSSLTFQDVGITD---GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSL 412 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (532)
....+++..+..|.....+....++ .|.+-.+..+.+.+..+..|++-.++.+...+.++.....-+.+++....
T Consensus 272 a~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~-- 349 (511)
T TIGR00806 272 VFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ-- 349 (511)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc--
Confidence 4445566677777777776664421 24444555666777788888886655433333333332222222222211
Q ss_pred CCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHH
Q 009536 413 PLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGL 475 (532)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 475 (532)
..+.+.......++...+.. ..++....+++....+..|..+|+.+++..+-..+-..
T Consensus 350 ----t~~Iw~~Y~~yvlf~~~y~f-litia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 350 ----SHDIWVLYVTYVLFRGIYQF-LVPIATFQIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred ----ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 11223333333333333332 23444455556666777799999988876665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=208.11 Aligned_cols=371 Identities=12% Similarity=0.017 Sum_probs=245.2
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHH--HHHHHHHHHHHHHhh-hccccccchhHHHHHhhHHH-
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLV--VSIFIAGAFVGSISS-GSLADKLGCRRTFQIDTIPL- 164 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~~~~~-G~l~dr~Grr~~l~~~~~~~- 164 (532)
...+...++..++..+...|.+|.+.+|.|. +..++|++ .++..+...+.++++ ++..||+||||.+++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~--~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGA--PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 4556666788899999999999999999998 99999997 466678887888888 55799999999976665432
Q ss_pred HHHHHHHH---hhhc-HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc
Q 009536 165 ILGAIISA---QAHS-LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (532)
Q Consensus 165 ~~~~~~~~---~a~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 240 (532)
++.....+ ...+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222 2222 3344555666777778888888888899999998898889898888999999998888888888
Q ss_pred chhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhc
Q 009536 241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE 320 (532)
Q Consensus 241 ~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
+ ||..|++.+++.++..+..++++|+++. +.+. ++......++.+|
T Consensus 161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~l~ 206 (390)
T TIGR02718 161 G-QRPAFLLVACVPLASLVCVLWLKDRAVA---SPEA------------------------------PLARRASLFRFFR 206 (390)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc------------------------------chhhHHHHHHHHc
Confidence 8 9999999998887766655555543210 0000 0000123456677
Q ss_pred CCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh--HHHHHHHH-HHHHHHhhhhHhhhhhcCCchhhhhhHH
Q 009536 321 EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVG-VTNFAGALCASYLMDKEGRQKLLIGSYL 397 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 397 (532)
+|..+.......+... .......+.+.++++.|.+.. +......+ ...+++.++.|++.||+|+|+.+..+..
T Consensus 207 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~ 282 (390)
T TIGR02718 207 RPLAWSLLALALLSAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVG 282 (390)
T ss_pred CcCHHHHHHHHHHHHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7765554443333322 222333355666677777643 45444444 4566778899999999999998887766
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCc-cccchhHHHHHHHHHHHHHHHHH
Q 009536 398 GMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSN-RTRGKIMGFSFSVHWVCNFLVGL 475 (532)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~ 475 (532)
+.++............. .... ..........++..+. .+.......+..++ +.+++.+++.+...++|..++|.
T Consensus 283 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~ 358 (390)
T TIGR02718 283 LAGSLALLWFAQAAFWL---APGI-AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASS 358 (390)
T ss_pred HHHHHHHHHHHHHHccc---CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 55333332222111000 0111 1111111111111122 23334444455554 78999999999999999999999
Q ss_pred HHHHHHHhhCcchhhHhHHHHHHHHHHh
Q 009536 476 FFLDLVETFGVAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 476 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 503 (532)
+.|.++|..|+...|.+.+++.+++.++
T Consensus 359 ~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 359 IAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 9999999999988888777766665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=227.13 Aligned_cols=302 Identities=17% Similarity=0.150 Sum_probs=211.5
Q ss_pred HHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHH
Q 009536 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 169 (532)
+..++..+......+..++.++.++++|++ +..+.|++.+.|.++++++.++.|+++||+|||+.+.++.++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l--ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL--STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCC--CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 444556677777788999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHhhh---------------------------------------------------cHHHHHHHHHHHhhhhhhhhhhh
Q 009536 170 ISAQAH---------------------------------------------------SLDEMLWGRFLVGLGIGVNTVLV 198 (532)
Q Consensus 170 ~~~~a~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~ 198 (532)
++++.+ .+..++++|+++|+|.+..++..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 998763 25567889999999999999999
Q ss_pred hHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc---------------------chhHHHHHhhHHHHHHH
Q 009536 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFIL 257 (532)
Q Consensus 199 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~ 257 (532)
.+++.|++|+++|+++++++..+..+|.++|+++++++.+.. +.||..|++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876432 12778888888888777
Q ss_pred HHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHh
Q 009536 258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQ 337 (532)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (532)
.+.++++|++.+....+.+.+..++. .. .....+ ...+ .....++....++.+++++.++...+...+
T Consensus 274 ~v~l~~~p~~lp~~~~~~~~~~~~~~--~~-~~~~~~-~~~~----~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~---- 341 (633)
T TIGR00805 274 SIPFFFFPKALPKEGKRVNVDVHETE--KL-EKSEDK-SRKK----NSDITKDFPKIIKRLLCNPIYMLVILAQVI---- 341 (633)
T ss_pred HHHHHhCccccCCcccccchhhhhhh--cc-cccccc-cchh----hhhhHHHHHHHHHHHHcCcHHHHHHHHHHH----
Confidence 66666666542110000000000000 00 000000 0000 000000112345667787765444443333
Q ss_pred hhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHH-HHHHHhhhhHhhhhhcCC--chhhhhhHHHHHHHHHH
Q 009536 338 QFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGV-TNFAGALCASYLMDKEGR--QKLLIGSYLGMAISMLL 405 (532)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 405 (532)
.......+..++|.++++ .+.+ .+++......+ +.+++.+++|+++||++. |+.+.++.++..++.++
T Consensus 342 ~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 342 DSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 334555666788888875 4554 34445444444 567899999999999884 45666666555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=205.58 Aligned_cols=407 Identities=14% Similarity=0.123 Sum_probs=251.5
Q ss_pred CCchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhh
Q 009536 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161 (532)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~ 161 (532)
..++|..+..........+. ...++...+.+.+++|+ +..+.+++.++. ....+++++.|++.||+|+|+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgl--s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNL--TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc--CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 34566555544444443332 23455677899999999 899999988874 445677888999999999999999999
Q ss_pred HHHHHHHHHHHhh------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHH-HHHhcC
Q 009536 162 IPLILGAIISAQA------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT-SLFLGI 234 (532)
Q Consensus 162 ~~~~~~~~~~~~a------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~ 234 (532)
++++++.++++++ ++++.+++.|+++|+|.+...+.+...+.+|+| ++||++.|+...+.++|.++ +++..+
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 689999999999999999999999999999997 56999999999999999975 555555
Q ss_pred CCCCCcchhHHHHHhhHHHHHHHHHHhcccc---cChhHHhhcCChhHHHHHHHHHcCC---------------------
Q 009536 235 PAEDDPHWWRTMLYIASLPGFILALGMQFTV---ESPRWLCKGGMLNDAKAVIANLWGE--------------------- 290 (532)
Q Consensus 235 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~--------------------- 290 (532)
++. .+ |++.|++.+++.++..++.+.+. +.|++..++++.++.++..++..+.
T Consensus 178 l~~--~~-~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~ 254 (591)
T PTZ00207 178 FFS--DN-TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILII 254 (591)
T ss_pred HHH--Hh-HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHH
Confidence 443 24 88888888888777655544433 2233322232222222221110000
Q ss_pred -----------------cchHH------HH------H---------------------HHH--H-----HHHhc------
Q 009536 291 -----------------SEINK------AI------E---------------------EFQ--L-----VIKKD------ 307 (532)
Q Consensus 291 -----------------~~~~~------~~------~---------------------~~~--~-----~~~~~------ 307 (532)
..... .. . +.+ + ..++.
T Consensus 255 l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (591)
T PTZ00207 255 LIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETD 334 (591)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccc
Confidence 00000 00 0 000 0 00000
Q ss_pred -c---CCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CC-Chh--H-HHHHHHHHHHHHHhhh
Q 009536 308 -G---SDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GI-TDG--A-LASLLVGVTNFAGALC 378 (532)
Q Consensus 308 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--~-~~~~~~~~~~~~~~~~ 378 (532)
+ .....++.+.+++..+|..++ .+++...........+.++.+.. |. .+. . ....+.++++.+|++.
T Consensus 335 ~~~~~P~~~~t~~q~l~~~d~Wll~~----~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~ 410 (591)
T PTZ00207 335 VDYIAPQFQETFIEGLKTARLWCLLW----SIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLC 410 (591)
T ss_pred ccCCCCCCcchHHHHHhchhHHHHHH----HHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHH
Confidence 0 000012333333444444333 33333334444445555666666 44 222 2 2567789999999999
Q ss_pred hHhhhhhcCCc--------hhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccc
Q 009536 379 ASYLMDKEGRQ--------KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPEL 449 (532)
Q Consensus 379 ~g~l~d~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 449 (532)
.|.++....+| ...+....++.++.++++.. .+... +.+..+..+++.|. +++....+.|+
T Consensus 411 ~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~--------~p~~~--L~~~~~lvg~~~G~~~~~~~~i~sel 480 (591)
T PTZ00207 411 MSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT--------LPKAA--LPLPYFIAAFANGFMAATIALVTRTI 480 (591)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH--------CCccH--hHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 99887322222 12222222244444444441 11112 22222333333343 46667888999
Q ss_pred cCccccchhHHHHHHHHHHHHHHH-HHHHHHHHHhh----------C---cchhhHhHHHHHHHHHHhhheeeccC
Q 009536 450 SSNRTRGKIMGFSFSVHWVCNFLV-GLFFLDLVETF----------G---VAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~g~~i~-~~~~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
+. ++-|+-+-+.....-+|..+- -.++|.++|+- | +..+|++.+++++++.++...+.-++
T Consensus 481 Fg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 481 FA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred hc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 99 778888888887777777765 56788888763 2 67889999999988888766554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=214.30 Aligned_cols=407 Identities=14% Similarity=0.053 Sum_probs=236.7
Q ss_pred HHHHHHHhhhhhhccccccchhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL 166 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~ 166 (532)
+..+++..+...+........++ .+.+++|+ +..+.+++.+.+........+++|+++|| +|||++++++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~--s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGM--SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 44555555556555555555444 55688999 88888888888877767777899999999 5999999999999999
Q ss_pred HHHHHHhhh-cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCccc--ccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 167 ~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
+.+++++++ +.+.++++|+++|+|.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+..+ |
T Consensus 101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~ 179 (500)
T PRK09584 101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-W 179 (500)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-H
Confidence 999999874 56677789999999999999999999999998653 4568899999999999999999999988888 9
Q ss_pred HHHHHhhHHHHHHHHHHhcc----cccChhHHhhcCChhHHHHHH-----------HHH-cCCcchHHHH------HHHH
Q 009536 244 RTMLYIASLPGFILALGMQF----TVESPRWLCKGGMLNDAKAVI-----------ANL-WGESEINKAI------EEFQ 301 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~------~~~~ 301 (532)
|+.|++.++..++..+...+ +++.++. ..+++.+...... ... ....+..... ....
T Consensus 180 ~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (500)
T PRK09584 180 SVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVV 258 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99999977654443332222 2222100 0000011000000 000 0000000000 0000
Q ss_pred HHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-c-----CCC-hhHHHHHHHHHHHHH
Q 009536 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-V-----GIT-DGALASLLVGVTNFA 374 (532)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~-~~~~~~~~~~~~~~~ 374 (532)
.......+. .+..+++.. ..+..++.....+..+.....++..+..+ . |.. ...+...+..+..++
T Consensus 259 ~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil 331 (500)
T PRK09584 259 IFGKEAFAM-----KGAARRKMI--VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMI 331 (500)
T ss_pred HHHHHHhhc-----CHHHHHHHH--HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHH
Confidence 000000000 001011110 11111111121222222222222221111 1 111 234555555655555
Q ss_pred Hhhhh----HhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccccccccc
Q 009536 375 GALCA----SYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELS 450 (532)
Q Consensus 375 ~~~~~----g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (532)
..++. +++.+|.+..+.+.++.++.+++++.+.............+.++.....++.........|....++.+..
T Consensus 332 ~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a 411 (500)
T PRK09584 332 GSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV 411 (500)
T ss_pred HHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 55555 45555555557788888888888888766433211111112233444344444444445688888899999
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHH----------HhhCcchhhHhHHHHHHHHHHhhhe
Q 009536 451 SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV----------ETFGVAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 451 ~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 506 (532)
|++.||+++|+......+|..++..+.+... ...++...|...++++++..++.+.
T Consensus 412 P~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 412 PQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877666666666655554221 0113566777677666555444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=187.14 Aligned_cols=374 Identities=16% Similarity=0.141 Sum_probs=253.0
Q ss_pred HHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccc-hhHHHHHhhHHHHHHHHHH
Q 009536 93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-CRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~~~~~~~ 171 (532)
+..+|+..+..+.+.|.++.+-++.|. +..|+|++.++..+...++++++|.++||++ +|+++.+..++.++.....
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~~G~--s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLESRGF--SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 444566666777788889999999998 9999999999999999999999999999986 6788888888888877777
Q ss_pred HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHh-cCCCCCCcc--hhHHHHH
Q 009536 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL-GIPAEDDPH--WWRTMLY 248 (532)
Q Consensus 172 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~~--~wr~~f~ 248 (532)
...++++.+++.-++..+......|...++..+...+ +++-.|-.-...++|.+++... ++.+....+ ...+.++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 8888999999888888888888888888888887763 4445555556666666666432 111111111 1334566
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHH
Q 009536 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
+.+...++.....+.+|+.|+.. +. .++.++....+..+++|+|+....+
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~~--~~----------------------------~~~~~~~~~~~~~~llk~~~~~~Fl 213 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPKR--SA----------------------------KESVKKLLGLDALKLLKNPRFLVFL 213 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCcccc--cc----------------------------CCCcccccchHHHHHhcCccHHHHH
Confidence 66666655555556677765200 00 0000111112334678888766544
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHHcC-CC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQDVG-IT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 405 (532)
+..++. .........|.+.++++.+ .. ..+....+..++.++.-...+++..|+|.++++.++.+..++=..+
T Consensus 214 l~~~l~----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 214 LAAFLI----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 443333 2344556667778888887 33 3355556667888899999999999999999999999998888888
Q ss_pred HHHHhcCCCCccchhhHHHHHHHH--HHHHHhccc-ccccccccccccCccccchhHHHHHHH-HHHHHHHHHHHHHHHH
Q 009536 406 VVGATSLPLDEDFSHNLSILGTLF--YIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLV 481 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~ 481 (532)
+..... +.+.......+ ..-+...+. ......++.+..|++.|+++.++++.. ..+|..+|..+.|+++
T Consensus 290 ~a~~~~-------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 290 YAYFSD-------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHHhcC-------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 776310 11111111111 122222222 244567888999999999999998876 4699999999999999
Q ss_pred HhhCcch------hhHhHHHHHHHHHHhhheeeccC
Q 009536 482 ETFGVAP------VYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 482 ~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
|+.|.+. .+.+.+++.++..++.+++.|++
T Consensus 363 ~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 363 DAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9988554 33445555555555554554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=187.42 Aligned_cols=400 Identities=14% Similarity=0.085 Sum_probs=254.5
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc----ccchhHHHHHh-hHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQID-TIP 163 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~ 163 (532)
++.++...+...+......+.++.+.+++|. +....+++..+..+...+.+++.|.++| |+|||+.++++ .+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~--~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGI--PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 4455555566666777777888888899999 8999999999999999999999999999 59999998875 666
Q ss_pred HHHHHHHHHhhhcHH-----------------HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccc--cchhhHhHHHHHH
Q 009536 164 LILGAIISAQAHSLD-----------------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR--GSLGTLCQVGTCL 224 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~ 224 (532)
.+++.++.++++++. .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 667777777776643 223333344557777888889999999998865 5799999999999
Q ss_pred HHHHHHHhcCCCC--CCc------------chhHHHHHhhHHHHHHHHHH-hcccccChhHHhhcCChhHHHHHHHHHcC
Q 009536 225 GIITSLFLGIPAE--DDP------------HWWRTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWG 289 (532)
Q Consensus 225 g~~~g~~~~~~l~--~~~------------~~wr~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 289 (532)
|.++|+.++++.. +.. .+.|+.|++.++..++..+. .+..+|.|... .++..++ +..
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~- 235 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAA- 235 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hcc-
Confidence 9999999987641 110 12789999988877766544 45567754210 0000000 000
Q ss_pred CcchHHHHHHHHHHHHhccCCCcchhhhhhcCC-cchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-c-CC--------
Q 009536 290 ESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP-HSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-V-GI-------- 358 (532)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-------- 358 (532)
+.++......++++++.- ...+.+...++..++.+.+...+..|.+.+..+ . +.
T Consensus 236 ---------------~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y 300 (477)
T TIGR01301 236 ---------------PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKY 300 (477)
T ss_pred ---------------cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHH
Confidence 000000011122222211 111222333333333444444455555554432 1 11
Q ss_pred Ch----hHHHHHHHHHHHHHHhhhhHhhhhhcCC-chhhhhhHHHHHHHHHHHHHHhcCCCC-----------ccchhhH
Q 009536 359 TD----GALASLLVGVTNFAGALCASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLD-----------EDFSHNL 422 (532)
Q Consensus 359 ~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 422 (532)
++ ..+.....++...+.+++..++.+|+|+ |+...++.++.++++....+....... .+.....
T Consensus 301 ~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 380 (477)
T TIGR01301 301 DDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIK 380 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhH
Confidence 11 1234445566666777888899999985 677788888888887777654321100 0000001
Q ss_pred HHHHHHHHHHHHhcc-cccccccccccccCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC--cchhhHhHHHHH
Q 009536 423 SILGTLFYIFTFAIG-AGPVTGLVIPELSSN--RTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--VAPVYAGFGGVS 497 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--~~~~~~~~~~~~ 497 (532)
......+...|...+ ...+.++++++..++ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++.+
T Consensus 381 ~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~ 460 (477)
T TIGR01301 381 ASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAA 460 (477)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHH
Confidence 222222222333222 246678888888884 456999999999999999999999998777766 455677777788
Q ss_pred HHHHHhhheeeccCCC
Q 009536 498 LLSALFAYYFIVETKG 513 (532)
Q Consensus 498 ~~~~~~~~~~~~~~~~ 513 (532)
++++++.++.+|+.+.
T Consensus 461 ~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 461 FVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 8888888888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=178.78 Aligned_cols=367 Identities=16% Similarity=0.077 Sum_probs=232.7
Q ss_pred CCchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHh
Q 009536 82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQID 160 (532)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~ 160 (532)
...|...++.+|+..|..+++....+....++.+|.++ +.++..++.+.|.+...+.++++|++.|| +|-|..-++-
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni--~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNI--EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhccccc--ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 34577788889999999999999888888888888888 78888999999999999999999999997 7888877777
Q ss_pred hHHHHHHHHHHHh---hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 161 TIPLILGAIISAQ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 161 ~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
++...+|.++++. .+.+|+++++||+.|+|.-...++.+.++.-||..||.+.++|+.....-+|..+-..+.+++.
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 7777788887764 6899999999999999998888899999999999999999999999999999887766666665
Q ss_pred CCcchhHHHH--HhhHHHHHHHHHHhcccccChhHHhhcCC-hhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcch
Q 009536 238 DDPHWWRTML--YIASLPGFILALGMQFTVESPRWLCKGGM-LNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (532)
Q Consensus 238 ~~~~~wr~~f--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
+..+ -.| ..-..+++...+-...+..+--.....+- .+.+++.+.+- .....+..+-.
T Consensus 197 ~~~~---~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e----------------~g~~Ge~pkLt 257 (459)
T KOG4686|consen 197 DTMG---RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLE----------------EGFLGEEPKLT 257 (459)
T ss_pred HHHH---HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh----------------cCcccCCcccc
Confidence 5332 000 00000011000000000000000000000 00111111000 00000110001
Q ss_pred hhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchh
Q 009536 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKL 391 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 391 (532)
-..-+ .|.+|... +.+..+......+....+.++++ .|.+. ++...........+.+++.|.++||+|++..
T Consensus 258 dv~~f-~ppfw~~~----iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~ 332 (459)
T KOG4686|consen 258 DVNTF-YPPFWVLV----IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW 332 (459)
T ss_pred ccccc-CccHHHHH----HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh
Confidence 01111 22333333 33333333344444445555554 46663 3444445556667778899999999999877
Q ss_pred hhhhHHHHH-HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHH
Q 009536 392 LIGSYLGMA-ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCN 470 (532)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 470 (532)
.+.+..+.. ++-..+.+ ..+.+...+.+.+..+..... ..+..++.+.|+++.|+++|+++.+.++|-
T Consensus 333 wv~~a~~~tl~~H~~l~F----------t~lsPy~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgl 401 (459)
T KOG4686|consen 333 WVASACILTLLGHSGLFF----------TFLSPYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGL 401 (459)
T ss_pred hHHHHHHHHHHHhhhHHh----------hhccHHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhh
Confidence 665544433 33333333 112233333333333332211 234556677888999999999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 009536 471 FLVGLFFLDLVETFG 485 (532)
Q Consensus 471 ~i~~~~~g~l~~~~g 485 (532)
++.|+++|.+.|..|
T Consensus 402 a~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 402 AFIPIIAGFIADGDG 416 (459)
T ss_pred hHHhhhhheeecCCC
Confidence 999999999998877
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=194.03 Aligned_cols=387 Identities=13% Similarity=0.018 Sum_probs=241.4
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccc-----hhHHHHHhhHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQIDTIP 163 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~ 163 (532)
+.++...++..++.........+.+.+++|+ +..+++...++..+...+-.+ +|+++||++ ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~--s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGL--DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 4445555677777744444555677778999 999999999999999988666 999999998 78888888777
Q ss_pred HH-HHHHHHHhhhcHHHHH-HHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHh---HHHHHHHHHHHHHhcCCCCC
Q 009536 164 LI-LGAIISAQAHSLDEML-WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC---QVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 164 ~~-~~~~~~~~a~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~g~~~g~~~~~~l~~ 238 (532)
.+ +.....+..++...+. +++++.+++.+...++..+++.|..+ +++....+.. ....++|.++|+.++|.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 4433344445544444 48899999999999999999999998 5454433333 33445899999999999988
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
..+ ||..|++.+++.++..+..++++|++.....+.. ++.... ..... .......+ +........
T Consensus 184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~~--------~~~~~-~~~~~~~~----~~~~~l~~~ 248 (468)
T TIGR00788 184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEMN--------MALLT-LGVLANVK----VQILGLRGA 248 (468)
T ss_pred hcC-cchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchhh--------hhhhh-hhHHHHHH----HHHHHHHHH
Confidence 877 9999999888887776666777775310000000 000000 00000 00000000 001122334
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 398 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 398 (532)
+++|..+..+...++.+...........++.+. ..+.+....+......+++.+++..+.+++.+|++.|+++.++.++
T Consensus 249 l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~-~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l 327 (468)
T TIGR00788 249 IQLLEIAKPLIFIFLSYANLPGASGSVFCATTQ-CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLL 327 (468)
T ss_pred HhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcc-cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 555554443333333111111111111111121 1223444668888888899999999999999999999998888887
Q ss_pred HHHHHHHHHHHh-cCCCCcc-chhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHH
Q 009536 399 MAISMLLVVGAT-SLPLDED-FSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLF 476 (532)
Q Consensus 399 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~ 476 (532)
.+++........ .+..... ...........+...+.+....+ ...++.+..|++.+|+.+++.+.+.++|..+++.+
T Consensus 328 ~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~ 406 (468)
T TIGR00788 328 YTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP-FLVLLARLCPSGCESSVFALLASILHLGSSVSGFL 406 (468)
T ss_pred HHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHcc-HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence 777664432111 0000000 01112222223333334443444 46788899999999999999999999999999999
Q ss_pred HHHHHHhhC-----cchhhHhHHHH
Q 009536 477 FLDLVETFG-----VAPVYAGFGGV 496 (532)
Q Consensus 477 ~g~l~~~~g-----~~~~~~~~~~~ 496 (532)
.+.+.+..| ++..+.+..+.
T Consensus 407 gg~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 407 GVLLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred HHHHHHHcCCCcccccchHHHHHHH
Confidence 999999988 66655544433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=183.01 Aligned_cols=402 Identities=11% Similarity=0.052 Sum_probs=228.8
Q ss_pred HHHHHHHhhhhhhccccccchhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLIL 166 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~ 166 (532)
+..++...+...+....+...+| .+.+++|+ ++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++.++
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgl--s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKY--DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 44444444555555554555555 44667888 899999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcc--cccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 167 ~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
+.++++... +...++++..+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+..+ |
T Consensus 89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w 167 (493)
T PRK15462 89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-W 167 (493)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-h
Confidence 988776543 2233444444555666777787888999999875 69999999999999999999999999988878 9
Q ss_pred HHHHHhhHHHHHHHHHHhcccccChhHH-hhcCChhHHHHHHHHH-------------cCCcchHHHHHHHH-H------
Q 009536 244 RTMLYIASLPGFILALGMQFTVESPRWL-CKGGMLNDAKAVIANL-------------WGESEINKAIEEFQ-L------ 302 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~------ 302 (532)
|+.|.+.++..++.++..++..+..... ..+.++.+.++..... .......+...... .
T Consensus 168 ~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (493)
T PRK15462 168 AMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIG 247 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987664444333332211110000 0000000000000000 00000000000000 0
Q ss_pred ---H-HHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc------CCC-hhHHHHHHHHHH
Q 009536 303 ---V-IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV------GIT-DGALASLLVGVT 371 (532)
Q Consensus 303 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~ 371 (532)
- .-...+..+. ++++...++..++.....+..+.....-+..+.++. |.+ .+.+...+..+.
T Consensus 248 ~~~~~~~~~~~~~~~-------er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ 320 (493)
T PRK15462 248 LGVLAKIYRKAENQK-------QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFA 320 (493)
T ss_pred HHHHHHHHHhcCCHH-------HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHH
Confidence 0 0000000000 011111111222222222222222222222222221 222 345666777777
Q ss_pred HHHHhhhhHhhhhhcCC--ch-----hhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccc
Q 009536 372 NFAGALCASYLMDKEGR--QK-----LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL 444 (532)
Q Consensus 372 ~~~~~~~~g~l~d~~g~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (532)
-++..++..++-.|..+ |. -+.++.++.+++++.+.............+.++++...++....-....|+..+
T Consensus 321 ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls 400 (493)
T PRK15462 321 VMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMS 400 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHH
Confidence 77777776666565532 21 256778888888877765433221111123344444444445555667899999
Q ss_pred ccccccCccccchhHHHHHHHH-HHHHHHHHHHHHHHHH------------hhCcchhhHhHHHHHHHH
Q 009536 445 VIPELSSNRTRGKIMGFSFSVH-WVCNFLVGLFFLDLVE------------TFGVAPVYAGFGGVSLLS 500 (532)
Q Consensus 445 ~~~~~~~~~~~~~~~g~~~~~~-~~g~~i~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~ 500 (532)
.++++.|++.+|..+|+..... .+|..++..+.+.... ...+...|...+...++.
T Consensus 401 ~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 401 QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999985533 4555555555543321 012344566666555544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=172.38 Aligned_cols=399 Identities=15% Similarity=0.095 Sum_probs=274.8
Q ss_pred CCCCchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH
Q 009536 80 LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159 (532)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~ 159 (532)
+-+.+||.+++..++..+.+++....+++........|+ +....-|...+|++.+....+++-|+.|++|-|..+++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 456788999999999999999999888888888888888 56667899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhh------hcHH--HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHH
Q 009536 160 DTIPLILGAIISAQA------HSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF 231 (532)
Q Consensus 160 ~~~~~~~~~~~~~~a------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 231 (532)
+..+.++|..+-..+ +.++ ....+..+.+.+.-........+..-||+++||..+..+-.++..+|.++|.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 999999999987765 2344 56678888888888777777888899999999999999999999999999998
Q ss_pred hcCCCCCCc----c-hhHH--HHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHH
Q 009536 232 LGIPAEDDP----H-WWRT--MLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303 (532)
Q Consensus 232 ~~~~l~~~~----~-~wr~--~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (532)
+...+..+. + .|.. .|+....++++.+++. +..++.|+.- ...+ .
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----ps~s----------------------~ 247 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----PSAS----------------------Q 247 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----Cchh----------------------H
Confidence 888876554 1 2554 3443333333333222 2233333200 0000 0
Q ss_pred HHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHh
Q 009536 304 IKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASY 381 (532)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~ 381 (532)
.+..+.+...+.+..++++.+....+.. ......++.+...+...+...+.. .+|.......++++++.++.|.
T Consensus 248 ~~~~~~~f~~si~~~~~n~~F~il~~~y----gi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 248 AALQDASFPKSIKSCFKNRQFIILAICY----GIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred hhhhcCcHHHHHHHHHcCccHHHHHHHH----hhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 0011222445667777777654433333 333334445555554333333444 6788888999999999999999
Q ss_pred hhhhcCCchh-hhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHH
Q 009536 382 LMDKEGRQKL-LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMG 460 (532)
Q Consensus 382 l~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 460 (532)
+.||.+..+. .++......++...+..... . ....+.+...+...+.++.+..|+..-+..|..-|..-++..|
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~-~----~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG 398 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVGTLMLLTCTL-F----LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSG 398 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-c----CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence 9999876554 33333333333222211111 1 1233334444555556667777888888888887777899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC----cchhhHhHHHHHHHHHHhhheeeccCCCCCHH
Q 009536 461 FSFSVHWVCNFLVGLFFLDLVETFG----VAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 517 (532)
Q Consensus 461 ~~~~~~~~g~~i~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (532)
+.+..+++-+.+-..+.+...+..+ +...-+.....+++..++..++.++.++++.+
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 9999999999999999998888777 44444555555555666555565555544433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=190.41 Aligned_cols=332 Identities=15% Similarity=0.105 Sum_probs=209.8
Q ss_pred hhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc----cchh-HHHHHhhHHHHHHHHHHHhhhc------H
Q 009536 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCR-RTFQIDTIPLILGAIISAQAHS------L 177 (532)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~ 177 (532)
....+.+++|+ +..++|.+.++..+..++..|+.|.++|| +||| +.++.+.+..++..++....++ +
T Consensus 32 l~~~~t~~~gl--s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 32 LAYFYTDVFGL--SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 45678888999 99999999999999999999999999999 7774 5555677777777665554432 4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcC-CcccccchhhHhHHHHHHHHHHHHHhcCC----CCC---CcchhHHHHHh
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIP----AED---DPHWWRTMLYI 249 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~----l~~---~~~~wr~~f~~ 249 (532)
..+++..++.+.+.........++..|+. +++||++..++...+..+|..+++.+... +.. ..+ |+..+.+
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i 188 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHH
Confidence 55666677777777777777788999988 46789988888877777777766554322 211 234 8988888
Q ss_pred hHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHH
Q 009536 250 ASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF 328 (532)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
.++++++..+..+ ..+|.++. + ++++.+.....+.+++++.++..+
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~---~------------------------------~~~~~~~~~~~~~~~~n~~~~~l~ 235 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTP---E------------------------------VDNSSSVWKDLKLLLGNSQWRIMF 235 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCC---C------------------------------CcCCCCHHHHHHHHhCCchHHHHH
Confidence 8877766554443 34443110 0 001111233456677777766654
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh-hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITD-GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVV 407 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 407 (532)
....+.............+|..+.+ +..+ .........+..+++.++.+++.||+|+|+.+..+..+.++....+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 312 (444)
T PRK09669 236 IFNVVLLTAVVTRGGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF 312 (444)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4433332222111122222222211 1122 23334444567778888999999999999998877665554333332
Q ss_pred HHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccC-------ccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009536 408 GATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLD 479 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 479 (532)
+.. ......+ .......+.+. ...+...++++|..+ .+..|..+|+.+.+..+|.++++.+.|.
T Consensus 313 ~~~-------~~~~~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 313 FIP-------PSNVWLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhC-------cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1112222 22222222222 334667777877764 3345678899999999999999999999
Q ss_pred HHHhhCcc
Q 009536 480 LVETFGVA 487 (532)
Q Consensus 480 l~~~~g~~ 487 (532)
+.+..||.
T Consensus 385 ll~~~Gy~ 392 (444)
T PRK09669 385 ILAWVDYV 392 (444)
T ss_pred HHHHcCCC
Confidence 99988873
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=189.07 Aligned_cols=354 Identities=10% Similarity=0.005 Sum_probs=213.0
Q ss_pred HHhhhhhhccccccchh-HHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc----ccch-hHHHHHhhHHHHHH
Q 009536 94 MSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGC-RRTFQIDTIPLILG 167 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~~~~~~ 167 (532)
++.+...+......+.+ ..+.+.+|+ +...+|.+..+..+.-++..|++|.++| |+|| |+.++.+.+..+++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gl--s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGL--SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 34444444444444444 456677799 9999999999999999999999999999 6698 66666787777777
Q ss_pred HHHHHhhhc------HHHHHHHHHHHhhhhhhhhhhhhHhhhhcC-CcccccchhhHhHHHHHHHHHHHHHhcCCC----
Q 009536 168 AIISAQAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPA---- 236 (532)
Q Consensus 168 ~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---- 236 (532)
..++-..++ +..+++..++.+++.....+...+++.|.. +++||.+..++-..+.++|..+.+.+...+
T Consensus 91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~ 170 (473)
T PRK10429 91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV 170 (473)
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665544321 345566667778888888888899999998 588999998886666666654444332211
Q ss_pred ---CCCcchhHHHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCc
Q 009536 237 ---EDDPHWWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLD 312 (532)
Q Consensus 237 ---~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (532)
.+..+ |+....+.+++.++..+.. +..+|.++....+ ..++++.+.+
T Consensus 171 g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~----------------------------~~~~~~~~~~ 221 (473)
T PRK10429 171 GGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV----------------------------SAEGSHLTLK 221 (473)
T ss_pred CCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceecCCccccc----------------------------cccccCCCHH
Confidence 11223 7887777777766544433 3355542100000 0000111122
Q ss_pred chhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCch
Q 009536 313 SQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQK 390 (532)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 390 (532)
..++.+++++.++..+....+... .......+.+++.+..... ..+.......++.+++.++.+++.||+|+|+
T Consensus 222 ~~~~~~~~n~~~~~ll~~~~~~~~----~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~ 297 (473)
T PRK10429 222 DIVALIYKNDQLSCLLGMALAYNI----ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI 297 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHH----HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 334445566544443333222222 2222222222232222111 2234444556788889999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC-------ccccchhHHHHH
Q 009536 391 LLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKIMGFSF 463 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~ 463 (532)
.+..+..+.+++.+.+....... ..+.+..++...+...+.+ ...+...++++|..+ .+..|..+|..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~ 373 (473)
T PRK10429 298 LWAGASIFPVLSCGVLLLMGLAA---PHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT 373 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC---chhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence 98877776665555543321111 1111222222222222222 223455667777754 344566899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Q 009536 464 SVHWVCNFLVGLFFLDLVETFGV 486 (532)
Q Consensus 464 ~~~~~g~~i~~~~~g~l~~~~g~ 486 (532)
.+..++..+++.+.|.+.+..||
T Consensus 374 ~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 374 MVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988876
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=179.90 Aligned_cols=337 Identities=17% Similarity=0.138 Sum_probs=239.6
Q ss_pred chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc----ccchhHHH-HHhhHHHHHHHHHHHhh-h------
Q 009536 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTF-QIDTIPLILGAIISAQA-H------ 175 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~a-~------ 175 (532)
...+.+.+.+|+ ++...|.+..+..+..++..|+.|.++| |+||||.+ ++|.++.+++.+++... +
T Consensus 23 ~~~~f~~~~~gl--~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 23 YLLYFYTDVLGL--SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 345677788899 9999999999999999999999999999 89976555 46777778777777655 4
Q ss_pred -cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCC-cccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc------hhHHHH
Q 009536 176 -SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH------WWRTML 247 (532)
Q Consensus 176 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~------~wr~~f 247 (532)
.+..+.+.-++..++.........++..|..+ ++||.+..+.-..+..+|.++...+.+.+.+..+ +|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 23345777777799999999999999999998 5789999999998888888766666665543222 499999
Q ss_pred HhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchH
Q 009536 248 YIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (532)
++.+++.++..+...+ .+|+++ +...++++.+.+..++.+++++.++.
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~-------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~ 229 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSV-------------------------------EVTEQEKKISLRDSLRSLFRNRPFRI 229 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccc-------------------------------cccccccccccccchhhhcccchHHH
Confidence 9988888876655544 455111 00111223334556778888887776
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
.+....+..+..........+|....+.+. ...+.......++.+++.++.++++||+|+|+.+..+..+.+++.+++
T Consensus 230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNE--GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence 666555554444433444444444433222 234556667788889999999999999999999999999999888887
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccC-------ccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
.+... .+... ........+.+ ........++.+|..+ .+..|..+|+.+....++..+++.+.+
T Consensus 308 ~~~~~-------~~~~~-~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 308 FFLGP-------GSPWL-VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHh-------hhHHH-HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 77431 12222 22233333333 2334667788888775 345689999999999999999999999
Q ss_pred HHHHhhCcc
Q 009536 479 DLVETFGVA 487 (532)
Q Consensus 479 ~l~~~~g~~ 487 (532)
.+.+..|+.
T Consensus 380 ~~l~~~Gy~ 388 (428)
T PF13347_consen 380 LLLALVGYD 388 (428)
T ss_pred HHHHHhCcC
Confidence 999887754
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=180.10 Aligned_cols=380 Identities=14% Similarity=0.059 Sum_probs=233.0
Q ss_pred HHHHHHHHhhhhhhccccccchhHHHHHh-hCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH--
Q 009536 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL-- 164 (532)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~-- 164 (532)
..+......+...+..+...|..+...++ .|+ +..++|.+.++..+...+.+++.|.++||+|.||-++....+.
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GL--s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGL--SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHH
Confidence 34555566666777788888888876654 899 9999999999999999999999999999999766554433222
Q ss_pred HHHHH-HHHhh----hcHH-HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 165 ILGAI-ISAQA----HSLD-EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 165 ~~~~~-~~~~a----~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
..+.+ ...+. .|++ ..+++-+..|+......++.-+++.++. ++.+.=.|-.-++.++|.+++..++|.+.+
T Consensus 86 l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~ 163 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN 163 (412)
T ss_dssp TCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence 12222 22222 2322 2333334445544555555555554443 223555666778889999999999998876
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhh
Q 009536 239 DPHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (532)
.. -+..||+....+++..++.++ .|+.++.....+.. ..++++.......+
T Consensus 164 i~--p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 215 (412)
T PF01306_consen 164 IN--PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL--------------------------GAKKDKVSLKDVLS 215 (412)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS--------------------------SS------HHHHHH
T ss_pred eC--ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc--------------------------ccCCCCCcHHHHHH
Confidence 43 467888776666655444433 33332110000000 00000001123456
Q ss_pred hhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC------hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchh
Q 009536 318 LLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT------DGALASLLVGVTNFAGALCASYLMDKEGRQKL 391 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 391 (532)
++|++++|...+....... .+.......+.++...-.+ ..+.......+..++.-.+..++.+|+|.|+.
T Consensus 216 l~k~~~fw~~~l~v~g~~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~ 291 (412)
T PF01306_consen 216 LFKMRNFWFFVLFVIGVAA----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL 291 (412)
T ss_dssp HTTSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HhcchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence 6777776665544333322 2222322234444433222 22566666678888888999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHH-HHHHHHH
Q 009536 392 LIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFS-FSVHWVC 469 (532)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g 469 (532)
++++..++.+=..+.++.. +.+. +...=..-+..... .....-++++.+|++..++...+. +...+++
T Consensus 292 Lllag~i~~iRi~~~~~~~--------~~~~--i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~ 361 (412)
T PF01306_consen 292 LLLAGVIMAIRIIGSGFAT--------NPWV--ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG 361 (412)
T ss_dssp HHHHHHHHHHHHHHHHT----------SHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc--------chHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 9999999988888877621 2222 22222222222222 223457888999999989999885 6778899
Q ss_pred HHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 470 NFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 470 ~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
.++.+.+.|.++|+.|++..|++.+.+.+...++..+.+++.++
T Consensus 362 ~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 362 IIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999999999999999999999998888887777776665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=174.86 Aligned_cols=346 Identities=13% Similarity=0.099 Sum_probs=200.3
Q ss_pred HHhhhhhhccccccch-hHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc----chhHHH-HHhhHHHHHH
Q 009536 94 MSNFLFGYHIGVMNGP-IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL----GCRRTF-QIDTIPLILG 167 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~----Grr~~l-~~~~~~~~~~ 167 (532)
++.+..........+. .+.+.+.+|+ +..++|.+.+...+..++..++.|+++||. |||+.+ +.+.+...+.
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl--~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGV--GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 3444444444443333 3467777899 999999999999999999999999999996 777654 5555545444
Q ss_pred HHHH-Hh----hhc--HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCC-cccccchhhHhHHH-----HHHHHHHHHHhcC
Q 009536 168 AIIS-AQ----AHS--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVG-----TCLGIITSLFLGI 234 (532)
Q Consensus 168 ~~~~-~~----a~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~~g~~~~~ 234 (532)
.++. .. .++ ...+++.-++.+++.+...+...++..+... +++|.+..++-..+ ..++..++|.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 93 SVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 21 111 2334445667788888888877777777665 46788776655443 3355666666655
Q ss_pred CCCCCcc-hhHHHHHhhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCc
Q 009536 235 PAEDDPH-WWRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLD 312 (532)
Q Consensus 235 ~l~~~~~-~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (532)
....... .|.....+.++++++..+ .....+|+++. +.++....
T Consensus 173 ~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~----------------------------------~~~~~~~~ 218 (448)
T PRK09848 173 SSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR----------------------------------IVAQPSLK 218 (448)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC----------------------------------CccCCCHH
Confidence 4322111 122222222333333222 22334443210 00011122
Q ss_pred chhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCc
Q 009536 313 SQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GITD--GALASLLVGVTNFAGALCASYLMDKEGRQ 389 (532)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 389 (532)
..++.+++++.+....+..++..... .......+.++++. +.+. .++......++.+++.++.+++.||+++|
T Consensus 219 ~~~~~l~~n~~f~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~ 294 (448)
T PRK09848 219 ISLQTLKRNRPLFMLCIGALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK 294 (448)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34566778877655544433333222 22222334343332 3222 12223333566778889999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcc-------ccchhHHHH
Q 009536 390 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNR-------TRGKIMGFS 462 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~ 462 (532)
+.+.++..+.+++.+.+.+... .+.+.......+...+.+. ..+...++.+|..|.+ ..|..+|+.
T Consensus 295 ~~~~~g~~~~~i~~~~~~~~~~------~~~~~~~~~~~l~g~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~ 367 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFWVSV------WSLPVALVALAIASIGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLF 367 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence 9999988887777666654110 1112212222222222222 2344556666766543 469999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCc
Q 009536 463 FSVHWVCNFLVGLFFLDLVETFGV 486 (532)
Q Consensus 463 ~~~~~~g~~i~~~~~g~l~~~~g~ 486 (532)
+....+|..+++.+.+.+.+..||
T Consensus 368 ~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 368 SFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999888776
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-19 Score=173.04 Aligned_cols=332 Identities=13% Similarity=0.051 Sum_probs=203.8
Q ss_pred hhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc----cchhHHH-HHhhHHHHHHHHHHHhhhc------H
Q 009536 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTF-QIDTIPLILGAIISAQAHS------L 177 (532)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~l-~~~~~~~~~~~~~~~~a~~------~ 177 (532)
....+.+.+|+ ++..+|.+..+.-+--++.-|+.|.++|| +||||.. +++.+..+++.+++-..++ +
T Consensus 32 l~~fyt~~~Gl--~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 32 MMFFYTDIFGI--PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHhhCC--CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 34567788899 99999999999999999999999999996 6876554 4566777777666554442 3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcCC-cccccchhhHhHHHHHHHHHHHHHhcCCCCCCc------chhHHHHHhh
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP------HWWRTMLYIA 250 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~wr~~f~~~ 250 (532)
..+++.-++..++.........++..|..+ ++||++..++...+..+|..+++.+...+.... .+|+....+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 445666777788888888888899999987 788999999999999988777766543322211 1288877777
Q ss_pred HHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHH
Q 009536 251 SLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI 329 (532)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (532)
+++.++..+..++ .+|.++. ++++.+.+...+..++++.++....
T Consensus 190 ~ii~~i~~~i~~~~~kE~~~~----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~ 235 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKERVEA----------------------------------PPTTTSMREDLRDIWQNDQWRIVGL 235 (460)
T ss_pred HHHHHHHHHHHHhcceeccCC----------------------------------CccCCCHHHHHHHHhCChHHHHHHH
Confidence 7766655444333 3342210 0001111233455666666554433
Q ss_pred HHHHHHHhhhcchhhHHHhHHHHHHHcCCC-hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHH
Q 009536 330 GGALFLLQQFAGINGVLYFSSLTFQDVGIT-DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 408 (532)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 408 (532)
...+.............+|..+++ +.. ..+.......++.+++.++++++.||+++|+....+..+.++..+++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~ 312 (460)
T PRK11462 236 LTIFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF 312 (460)
T ss_pred HHHHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 333332222222233333333322 222 2234455667888889999999999999998876554444333333322
Q ss_pred HhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC-------ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 409 ATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
.+ ...........++... ......+....+.+|..+ .+..|..++..+....+|.++++.+.|.+.
T Consensus 313 ~~------~~~~~~~~~~~~l~g~-~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 313 VP------MQASITMFVFIFVIGV-LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred hc------hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0111111222122211 112223444556666554 333355567777899999999999999999
Q ss_pred HhhCc
Q 009536 482 ETFGV 486 (532)
Q Consensus 482 ~~~g~ 486 (532)
+..||
T Consensus 386 ~~~Gy 390 (460)
T PRK11462 386 AYGGY 390 (460)
T ss_pred HHcCC
Confidence 87776
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-18 Score=163.66 Aligned_cols=357 Identities=15% Similarity=0.094 Sum_probs=226.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHh-hHHHHHHHHHHHhh-h-cHHHHHHHHHHHhhhhhhhhhhhh
Q 009536 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID-TIPLILGAIISAQA-H-SLDEMLWGRFLVGLGIGVNTVLVP 199 (532)
Q Consensus 123 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~-~~~~~~~~~~~~~a-~-~~~~l~~~r~l~G~~~g~~~~~~~ 199 (532)
.+..++..++..+..++..|+.|.++|+-|+||.++.. .++..+.+.++.+. + +++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788899999999999999999999876666554 44455566666664 3 455555566666677888888999
Q ss_pred HhhhhcCCcccc--------------------------cchhhHhHHHHHHHHHHHHHhcCCCCCCcc-------hhHHH
Q 009536 200 IYISEVAPTKYR--------------------------GSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWRTM 246 (532)
Q Consensus 200 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-------~wr~~ 246 (532)
+++.|..+++++ ++..+.-.....+|.++.-++.-.+....+ .-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 898888888888887776665543321111 15888
Q ss_pred HHhhHHHHHHHH-HHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcch
Q 009536 247 LYIASLPGFILA-LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325 (532)
Q Consensus 247 f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (532)
+.+.++.-++.. ...+++||.|+....+.......... ++....++++.+.|...
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~------------------------~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF------------------------KRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH------------------------HHHHHHHHHHHhChHHH
Confidence 887777766544 44455666653100000000000000 00012233333333322
Q ss_pred HHHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCChh--HHHHHHHHHHHHHHhhhhHhhhhhcCCc--hhhhhhHHHHH
Q 009536 326 VAFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGITDG--ALASLLVGVTNFAGALCASYLMDKEGRQ--KLLIGSYLGMA 400 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~ 400 (532)
..++..++..-+.+.+..+...+.. ..+.+.. ....+...+..++|.++.|++.||+|.| +++........
T Consensus 285 ----~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 285 ----LFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 2233333333455555555555555 4566644 5556667899999999999999999999 66665555442
Q ss_pred HH-HHHHH-HHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 401 IS-MLLVV-GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 401 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
+. ...+. +... .....+.+.+....++.+.+..+..+..-++.+++.|+++.+.-+|++.......+.+||.+.|
T Consensus 361 ~i~~~g~~G~~~~---~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 361 IIPLYGLFGFWPS---FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHHhhhc---ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22211 1111 0001222223333333333334456788899999999999999999999999999999999999
Q ss_pred HHHHhhC-cchhhHhHHHHHHHHHHhhheeeccC
Q 009536 479 DLVETFG-VAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 479 ~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
.+.+..| .+..+....++.+++.++. ...+..
T Consensus 438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~ 470 (477)
T PF11700_consen 438 LITDATGSQRYGFLFLLVLFLIGLILL-FFVDVE 470 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHH-hhccch
Confidence 9999988 6777777777777776665 344433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-19 Score=163.88 Aligned_cols=276 Identities=16% Similarity=0.050 Sum_probs=184.4
Q ss_pred HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc-----------
Q 009536 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP----------- 240 (532)
Q Consensus 172 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------- 240 (532)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|.+++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 345789999999999999999999999999999999999999999999999999999999999776321
Q ss_pred ----chhHHHHHhhHHHHHHHHHHhccc--ccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcch
Q 009536 241 ----HWWRTMLYIASLPGFILALGMQFT--VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314 (532)
Q Consensus 241 ----~~wr~~f~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
.+|+++|++.+.+.++..+.+.+. ||.++ +.++ ...+++ ...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~------------------------~~~~~~--~~~ 132 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA------------------------RVSSGD--TTQ 132 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc------------------------cccccc--ccc
Confidence 249999997766655554444333 33210 0000 000000 001
Q ss_pred hhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc---CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCc
Q 009536 315 WSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV---GIT--DGALASLLVGVTNFAGALCASYLMDKEGRQ 389 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 389 (532)
.+..++++..+. ..+..+.+.........+.+.|+.+. +.+ +.+.....+..+..+|+++.+++.||+++|
T Consensus 133 ~~~~~~~~~~~l----~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 133 KTSAFQFTHLVL----GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhhHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 112333333222 23333334444555666677777543 443 557778888899999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHH
Q 009536 390 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC 469 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 469 (532)
+.+.++..+..++.+++... +......... ..+.+.....|...+...+..|++ .+++.++. .+..+|
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~---------~~~~~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~G 276 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALT---------HGYVAMWFVL-ALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVG 276 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhc
Confidence 98887777666665444331 1111222222 222222334566667777776654 56777775 678899
Q ss_pred HHHHHHHHHHHHHhhCcchhhHhHHH
Q 009536 470 NFLVGLFFLDLVETFGVAPVYAGFGG 495 (532)
Q Consensus 470 ~~i~~~~~g~l~~~~g~~~~~~~~~~ 495 (532)
++++|.+.|.+.|..|.+..+++...
T Consensus 277 g~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 277 GAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999998777764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=156.32 Aligned_cols=335 Identities=17% Similarity=0.141 Sum_probs=225.5
Q ss_pred hHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc----cch-hHHHHHhhHHHHHHHHHHHhhhc------HH
Q 009536 110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGC-RRTFQIDTIPLILGAIISAQAHS------LD 178 (532)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~a~~------~~ 178 (532)
+-.+.+.+|+ ++..+|.+..+--+--++.-|+.|.++|| +|| |+.++.+.+..++.+.++-.+++ ..
T Consensus 36 l~fYTdv~Gi--s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ 113 (467)
T COG2211 36 LFFYTDVFGL--SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI 113 (467)
T ss_pred HHHHhcccCC--cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence 3466788899 89989999988888889999999999996 676 55666677888888888877763 44
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhhhhcCC-cccccchhhHhHHHHHHHHHHHHHhcCC----CCCC--cchhHHHHHhhH
Q 009536 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIP----AEDD--PHWWRTMLYIAS 251 (532)
Q Consensus 179 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~----l~~~--~~~wr~~f~~~~ 251 (532)
..++.-.+.+++.........++..|..+ ++||.+..++-+.+..+|..+...+... +.+. ..+|+..-++.+
T Consensus 114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~ 193 (467)
T COG2211 114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG 193 (467)
T ss_pred HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 46667888899999888888899999886 6889999999998888886554433322 2222 113888888888
Q ss_pred HHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHH
Q 009536 252 LPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG 330 (532)
Q Consensus 252 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (532)
+++++..+..++ .+|.+.. .. ..++..+.+.+..+..+++++.++...+.
T Consensus 194 vi~~i~~l~~~~~v~ER~~~---~~--------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~ 244 (467)
T COG2211 194 VIGVILLLFCFFNVKERVVE---TQ--------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLM 244 (467)
T ss_pred HHHHHHHHHHHHHhhcccCc---cc--------------------------cCcccccccHHHHHHHHHccchHHHHHHH
Confidence 877776655554 3343210 00 00000111222234456677766555443
Q ss_pred HHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHH
Q 009536 331 GALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 408 (532)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 408 (532)
.++.............+|..+. .+.. ...........+.+++.++..++.+|+|+|+++.++.++.+++.+++.+
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f 321 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF 321 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333322 2322 3345555566677777899999999999999999999999999888887
Q ss_pred HhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccC-------ccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009536 409 ATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSS-------NRTRGKIMGFSFSVHWVCNFLVGLFFLDL 480 (532)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 480 (532)
.+ .+...+..+..+..+.+. ...++.+++++|..+ .+..|..+|...++.-+|.+++..+.|++
T Consensus 322 ~~--------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 322 TP--------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred hc--------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 122233333323333333 345777788887753 44568899999999999999999999999
Q ss_pred HHhhCc
Q 009536 481 VETFGV 486 (532)
Q Consensus 481 ~~~~g~ 486 (532)
.+..||
T Consensus 394 L~~~Gy 399 (467)
T COG2211 394 LGAIGY 399 (467)
T ss_pred HHHcCC
Confidence 988875
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=164.84 Aligned_cols=396 Identities=17% Similarity=0.192 Sum_probs=234.6
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccch-hHHHHHhh
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDT 161 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~ 161 (532)
+..|+.+.+..+.+++.....+++.+..-.+.++++.+.+....||+.++..++.+++++.+|++..|.+. |+.++.|.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 34566688888889999999999888887777887666688899999999999999999999999999997 88999999
Q ss_pred HHHHHHHHHH-Hhh---h-cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCC
Q 009536 162 IPLILGAIIS-AQA---H-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (532)
Q Consensus 162 ~~~~~~~~~~-~~a---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 236 (532)
++..+++++. +++ + ..+.++++|++.|+|.| .....-+|+++....++|.++++....+..+|.++||.++..+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999999998 433 3 67889999999999976 6677788999988888899999999888888888887776544
Q ss_pred CCCc------------chhHHHHHhhHHHHHHHHHHhc-ccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHH
Q 009536 237 EDDP------------HWWRTMLYIASLPGFILALGMQ-FTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303 (532)
Q Consensus 237 ~~~~------------~~wr~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (532)
.... +.+-.+-|+.+++.++.++... ++.|.++.-..+..+. + ++
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~--------------------~--~~ 246 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRS--------------------V--EE 246 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccccccc--------------------c--hh
Confidence 3211 1134556777777776655544 4555543110000000 0 00
Q ss_pred HHhccCCCcchhhhhhcCCcc-hHHHHHHHHHHH-hhhcchhhHHHhHHHHHHHcCCC---hhHHHHHHHHHHHHHH---
Q 009536 304 IKKDGSDLDSQWSELLEEPHS-RVAFIGGALFLL-QQFAGINGVLYFSSLTFQDVGIT---DGALASLLVGVTNFAG--- 375 (532)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--- 375 (532)
.+ .-.+-.+.++. +...+.+.+..+ ..+..........+......+.. ..........+.+++.
T Consensus 247 ~~--------~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~ 318 (488)
T KOG2325|consen 247 EK--------SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVIL 318 (488)
T ss_pred hc--------cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHH
Confidence 00 00011111111 222222222222 22222221222222222222222 2222222223333322
Q ss_pred hhhhHhhh-hhcCCchhhhhhHHHHHHHHHHHHHHhcCCC------C--------------ccchhhHHHHHHHHHHHHH
Q 009536 376 ALCASYLM-DKEGRQKLLIGSYLGMAISMLLVVGATSLPL------D--------------EDFSHNLSILGTLFYIFTF 434 (532)
Q Consensus 376 ~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------------~~~~~~~~~~~~~~~~~~~ 434 (532)
.+...... .++.+|..+..+..+......+......+.. . ..............+...+
T Consensus 319 ~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~ 398 (488)
T KOG2325|consen 319 LLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVF 398 (488)
T ss_pred HHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhhee
Confidence 22222222 2334455555443333333222211100000 0 0000001111111112222
Q ss_pred hccc---ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 435 AIGA---GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 435 ~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
+.+. .....+..+|...|..+++..|++......+..++|.+...++...|+++.+.+.++..++...+...+.+
T Consensus 399 g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 399 GIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred ccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 23345667788899999999999999999999999999999999999998887777666665555444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-17 Score=150.39 Aligned_cols=415 Identities=15% Similarity=0.108 Sum_probs=259.5
Q ss_pred HHHHHHHhhhhhhccc-cccchhHHHHHhhC----CCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhH
Q 009536 89 VLIASMSNFLFGYHIG-VMNGPIVSIAKELG----FEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTI 162 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~ 162 (532)
+..+...-+..-++.. +-.+..-++..+++ . ++++..-+.+.|..-.-+..+++|+++|| .|+|+.+.+|.+
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~--~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGF--DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCc--ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5555555566655553 33444456666666 7 77777778888888888899999999999 599999999999
Q ss_pred HHHHHHHHHHhhh--cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcc--cccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 163 PLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 163 ~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
+..+|.++.+.+. +...++++-.+.++|.|..=+....++.|.+|++ +|-..++++.++.++|..++|++.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999999984 7889999999999999999999999999999854 37788999999999999999999999999
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhcccccC---------hhHHhhcCChhHHHHHH----HHH----cCCcchHHHHHHH-
Q 009536 239 DPHWWRTMLYIASLPGFILALGMQFTVES---------PRWLCKGGMLNDAKAVI----ANL----WGESEINKAIEEF- 300 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~---------p~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~- 300 (532)
..+ |+..|.+.++-....++..+..++. |..+..+.......... ... ...+.........
T Consensus 181 ~~g-~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 181 NYG-WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred hhC-HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 9999998887777666655444321 11111111110000000 000 0000000000000
Q ss_pred -HH-----HHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc--CCC-hhHHHHHHHHHH
Q 009536 301 -QL-----VIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV--GIT-DGALASLLVGVT 371 (532)
Q Consensus 301 -~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 371 (532)
.. .+....++.....++++ ..-+.++...+++..+.-..+.+..|.....++. |.+ ...+......+.
T Consensus 260 i~~~~~~~~~~~~~~~~~~er~r~~---~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~ 336 (498)
T COG3104 260 ILIAIIYFAEAFRSPKVFDERRRLL---AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF 336 (498)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHH
Confidence 00 00000000000101110 1112223333333333334444445544443222 222 446677777777
Q ss_pred HHHHhhhhHhhhhhcCCc-------hhhhhhHHHHHHHHHHHHHHhcCCCC-ccchhhHHHHHHHHHHHHHhcccccccc
Q 009536 372 NFAGALCASYLMDKEGRQ-------KLLIGSYLGMAISMLLVVGATSLPLD-EDFSHNLSILGTLFYIFTFAIGAGPVTG 443 (532)
Q Consensus 372 ~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
-++..++..++..+.+++ .-+.++..+++.+++++......... ....+.++++...++....-....|+..
T Consensus 337 Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGL 416 (498)
T COG3104 337 IILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGL 416 (498)
T ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 777777777777774433 12445666666666666554222211 2334445555555555666677788888
Q ss_pred cccccccCccccchhHHHHHHHHHHHHHHHHHHHHH------HHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 444 LVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLD------LVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 444 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
+++....|+...+..++........+..++..+.+. ..+.......|...+...++..+......|
T Consensus 417 s~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 417 SMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999998888777777777776662 344455667777777777766665544433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-16 Score=141.29 Aligned_cols=351 Identities=17% Similarity=0.155 Sum_probs=225.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHH-HhhHHHHHHHHHHHhhhc--H-HHHHHHHHHHhhhhhhhhhh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-IDTIPLILGAIISAQAHS--L-DEMLWGRFLVGLGIGVNTVL 197 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~a~~--~-~~l~~~r~l~G~~~g~~~~~ 197 (532)
+.+..+...++..+..++..|+.|.++|+.|+||... ....+..+..++..++++ + +..+++-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4456788888899999999999999999999765554 445555566666666654 4 44556778889999999999
Q ss_pred hhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhc------C----CC-C-------CCcchhHHHHHhhHHHHHHHHH
Q 009536 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG------I----PA-E-------DDPHWWRTMLYIASLPGFILAL 259 (532)
Q Consensus 198 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~------~----~l-~-------~~~~~wr~~f~~~~~~~~~~~~ 259 (532)
..+++.+..++++-++..++-.....+|..+.-++. + .. . +... -|..+.+.++..++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~i 214 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFAL 214 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHh
Confidence 999999999998877777665555555544433331 1 00 0 2222 68888888887777655
Q ss_pred HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhh
Q 009536 260 GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQF 339 (532)
Q Consensus 260 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
-.++..+++.... ....++ ..+.-++...+++++.+++.....++.. +...
T Consensus 215 Pm~~~v~~~~~~~--~~~~~~-----------------------l~~g~k~L~~t~k~i~~~~~i~~FLiA~----~~~~ 265 (438)
T COG2270 215 PMILNVHDAEKIS--SPPPTA-----------------------LRNGFKELKSTFKEIRGRKNLVLFLIAR----FFYI 265 (438)
T ss_pred HHHhccccccccc--ccchHH-----------------------HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHH
Confidence 5544433322100 000000 0000011123445555555433333332 3333
Q ss_pred cchhhHHHhHHHHHH-HcCCChh--HHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCc
Q 009536 340 AGINGVLYFSSLTFQ-DVGITDG--ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDE 416 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
-+.+....+...+.. ++|.++. .+......+..++|+++.|++.||+|.|+++..+.++..+..+...+.
T Consensus 266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~------- 338 (438)
T COG2270 266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL------- 338 (438)
T ss_pred hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-------
Confidence 355555556555555 5676644 566667789999999999999999999999888887776666555441
Q ss_pred cchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhhHhHHH
Q 009536 417 DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGV-APVYAGFGG 495 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~-~~~~~~~~~ 495 (532)
......+...++.+.+..+.....-++..+.+|+++.++.+|+++........+||...+.+.+..|. +..+.....
T Consensus 339 --~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 339 --EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred --cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 11222233333333334445677789999999999999999999999999999999999999988874 344444444
Q ss_pred HHHHHHHhhheeeccCC
Q 009536 496 VSLLSALFAYYFIVETK 512 (532)
Q Consensus 496 ~~~~~~~~~~~~~~~~~ 512 (532)
+..++.++ +...|..+
T Consensus 417 ll~iGl~~-L~~v~~~~ 432 (438)
T COG2270 417 LLLIGLLL-LLRVKVPG 432 (438)
T ss_pred HHHhhHhh-EEeecCCC
Confidence 44444443 34444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=134.06 Aligned_cols=333 Identities=18% Similarity=0.153 Sum_probs=219.4
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccc-----hhHHHHH-hhHHHHHHHHHHHhh-----h-----
Q 009536 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQI-DTIPLILGAIISAQA-----H----- 175 (532)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~a-----~----- 175 (532)
.|..|+++ .....+.+.++..+.. ...+.+|+.+|+.+ ||..+++ |.++...+..+..++ .
T Consensus 5 VMIvEL~v--pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 5 VMIVELGV--PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred hHHHHhcc--HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 46788998 8888888888877665 46999999999999 7766655 555555555555542 2
Q ss_pred ---cH-H--HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009536 176 ---SL-D--EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (532)
Q Consensus 176 ---~~-~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~ 249 (532)
.+ + ...+.-.+.|+|.+...+...+++.|..++++|+++.++.....-+|.+++..+.+.+.+.+..-|..-.+
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 22 2 23445688899999999999999999999999999999999999999999999998777665433433333
Q ss_pred hHHH--HHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHH
Q 009536 250 ASLP--GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (532)
Q Consensus 250 ~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (532)
.... .++..++..+-.|.+.. .. ....++++......++++..+|..++.
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~~-~~---------------------------~~~~~~~~~~f~~a~~~~~~~~~a~~f 213 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRRS-RR---------------------------AAAAERPRPPFREAWRQVWASPQARRF 213 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCCc-cc---------------------------ccCCCCCCccHHHHHHHHHhCCChhHH
Confidence 2222 22222222333332210 00 001112233344567777788887777
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhh-hcCCchhhhhhHHHHHHHHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMD-KEGRQKLLIGSYLGMAISMLLV 406 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
+...++..+..+.--..+-.|.-..+ ++...+........+.+.+++....|++.. |.++++...++....++++.++
T Consensus 214 ~~fl~l~t~a~~~QD~iLEPygg~Vf-gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQDVILEPYGGEVF-GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHHHhhHHHcCCchhHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 66655554432222222222222111 223335567777888888888888888776 6788888888888888888777
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHhcccc-cccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
...... ...+.+-..++..+++.|.. ....+.+.++..+++.|..+|.....+.+...++..+.|.+.|.
T Consensus 293 i~a~~~-------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 293 ILAGPL-------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHhc-------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664332 12333444444555555553 22335566777888899999999999999999999999988875
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=150.39 Aligned_cols=305 Identities=17% Similarity=0.144 Sum_probs=211.2
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 166 (532)
..+.++++..+..++....+...+..+.+.|++ +..+.|++.+.|-++..+...+..+..-|.-|-+.+-+|++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i--~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKI--SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 346777777888888888999999999999999 888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhh--------------------h-----------------------------c--HH-HHHHHHHHHhhhhhhh
Q 009536 167 GAIISAQA--------------------H-----------------------------S--LD-EMLWGRFLVGLGIGVN 194 (532)
Q Consensus 167 ~~~~~~~a--------------------~-----------------------------~--~~-~l~~~r~l~G~~~g~~ 194 (532)
+++++++= + + ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99999751 0 0 22 4667899999999999
Q ss_pred hhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc------------------chhHHHHHhhHHHHHH
Q 009536 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP------------------HWWRTMLYIASLPGFI 256 (532)
Q Consensus 195 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------------~~wr~~f~~~~~~~~~ 256 (532)
++.+.+|+-|...+++-...+|+......+|.++|.++|+++...+ |-|..-|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764311 1277788888888888
Q ss_pred HHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHH
Q 009536 257 LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLL 336 (532)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (532)
..+.++++|++.+.-.+ + +..++....++... .++......+.-++.....+.+++++ +++...+...
T Consensus 335 ~a~p~f~fPk~lp~~~~---~----~~~~~~~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~N~----if~~~~l~~~ 402 (735)
T KOG3626|consen 335 SAVPLFFFPKELPKSQK---R----KRARDLHVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLSNP----IFMLVVLASV 402 (735)
T ss_pred HHHHHHhCcccCccccc---c----chhhhhcccccccc-cccCCcchhhhHHHHHHHHHHHhcCc----hHHHHHHHHH
Confidence 88888888865321100 0 00000000000000 00000000000011123445556665 4555556666
Q ss_pred hhhcchhhHHHhHHHHHHHc-CCCh--hHHHH-HHHHHHHHHHhhhhHhhhhhcC--CchhhhhhHHHHHHHHHH
Q 009536 337 QQFAGINGVLYFSSLTFQDV-GITD--GALAS-LLVGVTNFAGALCASYLMDKEG--RQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~ 405 (532)
.....+.....|+|.|++.. +.++ +..+. .+...+..+|.+++|++..|+. .|....+..+...+..+.
T Consensus 403 ~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 403 IESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 66677888899999999754 5543 23333 2233455678889999999875 344444444444443333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=158.85 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=140.4
Q ss_pred cccchhHHHH-HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH---HHhhhcHHHH
Q 009536 105 VMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEM 180 (532)
Q Consensus 105 ~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~---~~~a~~~~~l 180 (532)
.....+|.+. +++|. +..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...+
T Consensus 268 ~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 268 MLLTYMPSYLSHNLHY--SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3344556544 56787 6667788888889999999999999999999999998887655443332 2234567788
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009536 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (532)
Q Consensus 181 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 260 (532)
+++|++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+..++|+..+++..+.+++.++.
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 88999999888777777888889999999999999975444455567788888877665444788877777777777777
Q ss_pred hcccccChhHHhhc-----CChhHHHHHHHHHcC
Q 009536 261 MQFTVESPRWLCKG-----GMLNDAKAVIANLWG 289 (532)
Q Consensus 261 ~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~ 289 (532)
.+++||+|+|+.++ ++.+++.+.+.++++
T Consensus 426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 426 GVTMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 77789999987754 888999999888864
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-17 Score=164.95 Aligned_cols=383 Identities=15% Similarity=0.155 Sum_probs=3.0
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
++.+++..+......+.....+..+++.|++ +..+.|++.+.|-++..+..++..++.+|..|-+.+-+|.+++++++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l--~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGL--SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 4555666666677778888899999999999 99999999999999999999999999999888888999999999999
Q ss_pred HHHHhh----h----------------------------------------------cHHHHHHHHHHHhhhhhhhhhhh
Q 009536 169 IISAQA----H----------------------------------------------SLDEMLWGRFLVGLGIGVNTVLV 198 (532)
Q Consensus 169 ~~~~~a----~----------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~ 198 (532)
+++++= + -+..++++.++.|+|....++.+
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 988740 0 12447788999999999999999
Q ss_pred hHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc---------------------chhHHHHHhhHHHHHHH
Q 009536 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFIL 257 (532)
Q Consensus 199 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~ 257 (532)
.+|+-|..++++-+..+|++.+...+|.++|.++++.+...+ |-|..-|++.+.+.++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765321 11556666677777776
Q ss_pred HHHhcccccCh-hHHhhcCChhHHHHHHHHHcCCcchHHHHHHHH--HHHHhccCCCcchhhhhhcCCcchHHHHHHHHH
Q 009536 258 ALGMQFTVESP-RWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ--LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALF 334 (532)
Q Consensus 258 ~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (532)
.+..+++|+.- +....++..+..++.. ++...+...+.+ ....+.-+......+.++++|. ++...+.
T Consensus 243 aipl~~FPk~lp~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~----f~~~~la 313 (539)
T PF03137_consen 243 AIPLFFFPKKLPGTSERQEEKESSERKE-----EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV----FMCLILA 313 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccCCCcccccchhhhhhcch-----hhhhhhcccccccccchhhhhhhHHHHHHHHhcChH----HHHHHHH
Confidence 67777777542 2100000000000000 000000000000 0001112223344555666664 4444445
Q ss_pred HHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHH-HHHHHHHHHHhhhhHhhhhhcC--CchhhhhhHHHHHHHHHHHH-
Q 009536 335 LLQQFAGINGVLYFSSLTFQDV-GIT--DGALAS-LLVGVTNFAGALCASYLMDKEG--RQKLLIGSYLGMAISMLLVV- 407 (532)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~- 407 (532)
..........+..+.|.|++.. +.+ .+.+.. .....+..+|.+++|++.+|++ .|..+....+...++.+++.
T Consensus 314 ~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~ 393 (539)
T PF03137_consen 314 GVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSP 393 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666778888899998753 333 333333 2333466788999999999974 34444444444433333311
Q ss_pred --HH--hc-------CCC---------C----------------------ccc-hhhHHHHHHH-HHHHH-Hhccccccc
Q 009536 408 --GA--TS-------LPL---------D----------------------EDF-SHNLSILGTL-FYIFT-FAIGAGPVT 442 (532)
Q Consensus 408 --~~--~~-------~~~---------~----------------------~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~ 442 (532)
+. .. .+. . +.. ........+. ++... .+....|.
T Consensus 394 ~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~- 472 (539)
T PF03137_consen 394 LFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPS- 472 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccch-
Confidence 10 00 000 0 000 0111111111 11111 12222343
Q ss_pred ccccccccCccccchhHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 009536 443 GLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVET 483 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~i~~~~~g~l~~~ 483 (532)
....-..+|+++|+.+.|+...+.. +|.+-+|.++|.+.|.
T Consensus 473 ~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 473 TLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------
T ss_pred heeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 3445578899999999999987765 5667899999999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=124.00 Aligned_cols=134 Identities=21% Similarity=0.326 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcc
Q 009536 130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK 209 (532)
Q Consensus 130 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 209 (532)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009536 210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 210 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
+|++..++.+....+|..+++.+++.+.+..+ |++.|++.++..++..+...++
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988777 9999999888777765555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=132.46 Aligned_cols=359 Identities=18% Similarity=0.133 Sum_probs=223.1
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHH----HHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF----IAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
.......+-.|..++......+..+.....++.+.+. ..+...... .+...+..+..|.++||+|||..+.+.++
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~-~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQL-ENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccc-hhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 3344555555666666666666666666666543222 223334443 67778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhhh--hhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc
Q 009536 163 PLILGAIISAQAHSLDEMLWGRFLVGLGI--GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (532)
Q Consensus 163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 240 (532)
...+..+...+.. +| +++ +.|+.. +.......++++|....++|....++.......+..++|.+++.+....
T Consensus 101 ~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~ 175 (463)
T KOG2816|consen 101 GTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL 175 (463)
T ss_pred HHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9998888888776 33 333 344332 3566778889999999999999999999999999999999999988877
Q ss_pred chhHHHHHhhHHHHHHHHHHh-cccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhh
Q 009536 241 HWWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELL 319 (532)
Q Consensus 241 ~~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
+ .-..|.+..+..++..+.. .++||+-.. +.+.+ + ....... .+.........++...
T Consensus 176 ~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~-----~~~~~~~-----------~~~~~~~~~~~~~~~~ 234 (463)
T KOG2816|consen 176 G-IALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-A-----TLRELTP-----------GSLDSSHVADAFQSLT 234 (463)
T ss_pred C-chHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-c-----cccccCC-----------Ccccchhhhhhhhhhc
Confidence 6 7788888888877766555 446665320 00000 0 0000000 0000000011111111
Q ss_pred cCCcchHHHHHHHHHH---Hhhhcchh-hHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhH-hhhhhcCCchhhhh
Q 009536 320 EEPHSRVAFIGGALFL---LQQFAGIN-GVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCAS-YLMDKEGRQKLLIG 394 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~ 394 (532)
+....+..+....... ........ ...+|+..-+ +.+..+.+...........++.++.. .+...++.|+....
T Consensus 235 ~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f-~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 235 KVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKF-GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred ccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeec-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 1111111111111111 11111111 1122222111 22333445556666666777766655 77778898888888
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHH
Q 009536 395 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG 474 (532)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 474 (532)
|.....+....+.+.. . .+..........+.....|...+..+...+++.+|++.++...+..+.+.++|
T Consensus 314 Gl~~~~~~~~~~af~~--------~--~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFAT--------E--TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred HHHHHHHHHHHHHHhc--------c--chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 8888888888888732 1 22222233334444455677778888889999999999999999999999999
Q ss_pred HHHHHHHHh
Q 009536 475 LFFLDLVET 483 (532)
Q Consensus 475 ~~~g~l~~~ 483 (532)
.+.+.++..
T Consensus 384 ~~~~~i~~~ 392 (463)
T KOG2816|consen 384 ALYGNIFAL 392 (463)
T ss_pred HHHHHHHHH
Confidence 999988754
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-15 Score=143.04 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=129.9
Q ss_pred chhHHHHHhhCCCC------ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh----cH
Q 009536 108 GPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH----SL 177 (532)
Q Consensus 108 ~~~~~~~~~~~~~~------~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----~~ 177 (532)
...+...++.|.+. .....+...++..++..++.++.|+++||+|+|+++.++.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 44455566666421 235668999999999999999999999999999999999999988877776632 34
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCcc-----hhHHHHHhhH
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-----WWRTMLYIAS 251 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~-----~wr~~f~~~~ 251 (532)
+.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|.++||+++|.+.+..+ +|+..|++.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999888999999999999999999999997 6789999999999999887632 2999999888
Q ss_pred HHHHHHHHHhcc-cccC
Q 009536 252 LPGFILALGMQF-TVES 267 (532)
Q Consensus 252 ~~~~~~~~~~~~-~~~~ 267 (532)
+..++..++.++ ++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 887776555544 4443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=133.34 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=129.3
Q ss_pred chhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHH
Q 009536 108 GPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (532)
Q Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l 186 (532)
...| .+++++|. ++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++
T Consensus 237 ~~~p~~l~~~~~~--~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 237 INMPLFIINELHL--PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455 45567888 78888988888888888899999999999999998888777666665555567788888889999
Q ss_pred HhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccccc
Q 009536 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266 (532)
Q Consensus 187 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
.+++.|...+....+..|.+|++ |++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++.++..++.+|
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99888887778888889999864 9999999999999999999999999988877 999999988888887777766654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-13 Score=129.32 Aligned_cols=356 Identities=15% Similarity=0.110 Sum_probs=207.7
Q ss_pred chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-----chhHHHHHhhHHHHHHHHHHHhh----hcHH
Q 009536 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRTFQIDTIPLILGAIISAQA----HSLD 178 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~a----~~~~ 178 (532)
+..+.+.+++|+ ++.+.....+...+...+ .+++|.++|.+ .||+-++++.++..++.+.++.. .+..
T Consensus 11 ~~~~~l~~~l~l--s~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 11 AIYPFLKDDLGL--SPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 456788999999 899888888888887755 77899999987 36667777777776666666653 3566
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhhhhcCC--cccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHH
Q 009536 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAP--TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI 256 (532)
Q Consensus 179 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 256 (532)
...++-++..+|......++-+++.|... +++||...+.......+|.+++..++|.+.+..+ +|+.|.+.+++.++
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLL 166 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHH
Confidence 67777888899999999999999999884 3347788888888999999999999999998888 99999988877777
Q ss_pred HHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHH-HHHHHH
Q 009536 257 LALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFI-GGALFL 335 (532)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 335 (532)
..+..+++.|+.+ +.+.++... ...+ ........ .++.....++.++.+..+...+ ..++..
T Consensus 167 ~~~~~~~~~~e~~----~~~~~~~~~----~~~~-~~~~~~~~--------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 229 (433)
T PF03092_consen 167 MLIVALFLLEERK----VRPADEVFS----FGKE-EVPCLFGS--------FREQLSELWRALQQRAIWQPILFFIFFFN 229 (433)
T ss_pred HHHHHHHhhhhcc----ccccchhhc----cccc-ccchhhHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6655555554311 000000000 0000 00000000 0001122334444444443333 111111
Q ss_pred HhhhcchhhHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHH-HhcC
Q 009536 336 LQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG-ATSL 412 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 412 (532)
...........++........+.+.. +....+..++.++|..+......+..-|+++....++..+..+.-.. ...+
T Consensus 230 ~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~ 309 (433)
T PF03092_consen 230 LPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRW 309 (433)
T ss_pred hccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEE
Confidence 11111111011222111111113322 33444455666666666666555566666665555444333222111 0000
Q ss_pred CCCc-cchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009536 413 PLDE-DFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 485 (532)
Q Consensus 413 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 485 (532)
...- -.+.+..+.-..+.-........|. ...++|++|+..-|+.+++...+.|+|..++..+...+.+..|
T Consensus 310 n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 310 NLDLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred eeeeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 0011212222222222223333343 3667899999999999999999999999999999999988776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=142.04 Aligned_cols=140 Identities=14% Similarity=-0.024 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcC
Q 009536 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (532)
Q Consensus 127 ~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 206 (532)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455667888999999999999999999999999999999999999998888889999999988889999999999999
Q ss_pred CcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccCh
Q 009536 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 207 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
|.++|++++|+..+...+|.++||++++.+.... ...+|++.++..++.+++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998776542 56788888777777777777778763
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.8e-14 Score=136.12 Aligned_cols=158 Identities=21% Similarity=0.142 Sum_probs=134.4
Q ss_pred chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 009536 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLV 187 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~ 187 (532)
..+|.+.++.|. +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-++.
T Consensus 241 ~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 241 NWLPSLLVGQGL--SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHHHhCCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 346777788888 888889999999999999999999999999999999988777777777777788888888888899
Q ss_pred hhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccC
Q 009536 188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES 267 (532)
Q Consensus 188 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 267 (532)
|++.+...+...+++.|.+|+++|++..++.+....+|..+||.+++.+.+..++|...+++.....++..+..+++.++
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR 398 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888888889999999999999999999999999999999999999998876557777877776666665555544443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-14 Score=138.44 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=126.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~ 201 (532)
+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....+
T Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhhcCCcccccchhhH-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccC
Q 009536 202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (532)
Q Consensus 202 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~ 267 (532)
+.|.+|++.|+...+. ++....+|.++++.+.|++.+..| ||..|++.+++.++..+..++ .+++
T Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988887665 677788999999999999999888 999999888877665544443 4443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=136.86 Aligned_cols=148 Identities=18% Similarity=0.065 Sum_probs=127.7
Q ss_pred chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcH--HHHHHHHH
Q 009536 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRF 185 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~ 185 (532)
...+.+.++++. +..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++. ..+++..+
T Consensus 226 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 226 GLYKPYGQSLGL--SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 345556778887 78888999999999999999999999999999999999999999888888777643 33456678
Q ss_pred HHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHH
Q 009536 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258 (532)
Q Consensus 186 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 258 (532)
+.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.|++.+++.++..
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence 88888888888888899999999999999999999999999999999999988888 9999998877766543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=130.23 Aligned_cols=170 Identities=25% Similarity=0.343 Sum_probs=149.3
Q ss_pred HHHHhhhhhhccccccchhHHHHHhh-CCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhH-HHHHhhHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKEL-GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR-TFQIDTIPLILGAI 169 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~ 169 (532)
..+..+.............|.+.++. |. +..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGL--SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33334444555556666667666665 77 8889999999999999999999999999999999 99999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009536 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (532)
Q Consensus 170 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~ 249 (532)
...+.++.+.+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~ 336 (352)
T cd06174 258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLI 336 (352)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777 9999999
Q ss_pred hHHHHHHHHHHhccc
Q 009536 250 ASLPGFILALGMQFT 264 (532)
Q Consensus 250 ~~~~~~~~~~~~~~~ 264 (532)
.+++.++..+...++
T Consensus 337 ~~~~~~i~~i~~~~~ 351 (352)
T cd06174 337 LAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHHHHHheec
Confidence 999888877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=131.76 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=132.1
Q ss_pred cchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHH
Q 009536 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (532)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l 186 (532)
...++.+.++.|. + +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus 236 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 236 ATFITLYYAARGW--D--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHHccc--c--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444555555554 3 34667788889999999999999999999999999999999888888888888888899999
Q ss_pred HhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccccc
Q 009536 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266 (532)
Q Consensus 187 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.+...++..+..+++++
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888888888899999999999999999999999999999999888777 999999988888777666665555
Q ss_pred C
Q 009536 267 S 267 (532)
Q Consensus 267 ~ 267 (532)
+
T Consensus 391 ~ 391 (399)
T PRK05122 391 R 391 (399)
T ss_pred c
Confidence 4
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=129.89 Aligned_cols=166 Identities=12% Similarity=-0.027 Sum_probs=140.1
Q ss_pred HHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 009536 91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170 (532)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 170 (532)
...+..++.......+....|.+.+|+|. ++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++
T Consensus 209 ~~l~~~~l~~~~~~~~~~~~~~~l~~~g~--s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 209 RFLAAVCLIQGAHAAYYGFSAIYWQAAGI--SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 33334444444454455566767778888 8899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009536 171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (532)
Q Consensus 171 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~ 249 (532)
.+++++.+.+++.+++.|+..+...+....++.+. |+++|++..++++ ...++|.++|+.++|.+.+..+ + ..|++
T Consensus 287 ~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~ 363 (382)
T TIGR00902 287 IGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVF 363 (382)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHH
Confidence 99999999999999999999999999999999998 9888999999986 5788999999999999999887 6 56777
Q ss_pred hHHHHHHHHHHh
Q 009536 250 ASLPGFILALGM 261 (532)
Q Consensus 250 ~~~~~~~~~~~~ 261 (532)
.+++.++..++.
T Consensus 364 ~~~~~~~~~~~~ 375 (382)
T TIGR00902 364 MAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHH
Confidence 677666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-13 Score=130.46 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=130.3
Q ss_pred cchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHH
Q 009536 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186 (532)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l 186 (532)
....+.+.++.+. +. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++
T Consensus 236 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 236 GTFVSLYFASKGW--AM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHHHhcCC--ch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444555566665 43 4566777888889999999999999999999999999999998888888888888899999
Q ss_pred HhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc
Q 009536 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (532)
Q Consensus 187 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
.|++.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+.+.+..+ |++.|++.+++.++..+..++
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHh
Confidence 9999998888888889999999999999999999999999999999999998888 999999988877776655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=132.14 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=132.0
Q ss_pred ccccchhHHHHHhhCCCCC--hhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHH
Q 009536 104 GVMNGPIVSIAKELGFEGN--PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML 181 (532)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~ 181 (532)
....+.++.+.++.+.+.+ ....+++.+++.++..++.+.+|+++||+|||+.+..+..+..++.+...+.++.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLG 315 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344555655555433111 12346677778888889999999999999999999999998888888888888888899
Q ss_pred HHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009536 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 182 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
+.+++.|++.+...+...+++.+..++++|++.+++.+....+|..+||.+++.+.+..+ |++.|++.+++.++..+..
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888 9999999988887766655
Q ss_pred cc
Q 009536 262 QF 263 (532)
Q Consensus 262 ~~ 263 (532)
++
T Consensus 395 ~~ 396 (408)
T PRK09874 395 WN 396 (408)
T ss_pred HH
Confidence 44
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=127.55 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=128.0
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhh
Q 009536 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI 191 (532)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~ 191 (532)
.+.+++|. ++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|++.
T Consensus 225 ~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 302 (375)
T TIGR00899 225 LIIHELGL--PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI 302 (375)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888 7888898888887777888999999999999999999888777766666667788888888999999999
Q ss_pred hhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccc
Q 009536 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265 (532)
Q Consensus 192 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+...+....++.|..|++ ++++.++++....+|..++|.+++.+.+..+ |+..|++.++..++..+...+++
T Consensus 303 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 303 GILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheec
Confidence 988888888999998765 6799999999999999999999999988877 99999998888887776665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-13 Score=132.56 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=131.8
Q ss_pred HHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc--chhHHHHH--hhHHHHHHHH
Q 009536 94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQI--DTIPLILGAI 169 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l~~--~~~~~~~~~~ 169 (532)
+..++..+........+|.+.+++|. +..+.+++.+++.++..+++++.|+++||. ++|+...+ +.++.+++.+
T Consensus 248 ~~~~l~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l 325 (455)
T TIGR00892 248 SGNVIMFLGFFAPIIFLVPYAKDKGV--DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL 325 (455)
T ss_pred HHHHHHHHHccchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444566777788888 888999999999999999999999999983 44443333 3444455556
Q ss_pred HHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 009536 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (532)
Q Consensus 170 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~ 249 (532)
++.+.++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.++|.+.+..++|++.|++
T Consensus 326 l~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 326 LCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred HHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999998876559999999
Q ss_pred hHHHHHHHHH
Q 009536 250 ASLPGFILAL 259 (532)
Q Consensus 250 ~~~~~~~~~~ 259 (532)
.+++.++..+
T Consensus 406 ~~~~~li~~~ 415 (455)
T TIGR00892 406 SGSIVVSAGL 415 (455)
T ss_pred hhHHHHHHHH
Confidence 8887665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-12 Score=117.31 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=140.2
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 405 (532)
++...+..+..........-.+|.+-++.+.+ .+++..+.++++..++.++...+.||+.||++++....+++++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 33334444444455566677788888999887 5689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009536 406 VVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 484 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 484 (532)
..+.+ +...+.+.=+..+... .++++...+..++.|+++|+++.++......++..+|.++..++-|.+
T Consensus 95 ~alAp----------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 95 SALAP----------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred HHHhc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 88832 2233333323333333 345777888999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHHHHHHHhhheeec
Q 009536 485 GVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 485 g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
||+..|+..+++.++..+..+..+|
T Consensus 165 GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988888888
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=125.83 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=121.4
Q ss_pred HhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCC
Q 009536 336 LQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 413 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (532)
+..+........+.|.+.++.+.+ +.++......++..++.++.|++.||+|+|+.+.++.++.+++.+++...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 108 (434)
T PRK11663 33 ALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS---- 108 (434)
T ss_pred HHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----
Confidence 333333345566778888888776 44777778889999999999999999999999999988888887776652
Q ss_pred CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHh
Q 009536 414 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG 492 (532)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 492 (532)
.....+.. ..+..+.+.+ ..+....++.|.+|+++|++++|+.+...++|..+++.+.+.+.+..||+..|.+
T Consensus 109 -----~~~~~l~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 -----SSLWAFAL-LWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred -----hHHHHHHH-HHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 22222222 2222222222 2455667888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhheeecc
Q 009536 493 FGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~ 510 (532)
.+++.++..++..+..++
T Consensus 183 ~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 877666554444444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-12 Score=113.14 Aligned_cols=249 Identities=15% Similarity=0.077 Sum_probs=158.5
Q ss_pred hccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHH
Q 009536 101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180 (532)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 180 (532)
......+|..-.+-+++|. +..+++.+...-+....+..++.|.++||+|||+.-++.+++.+++++ +-..++++.+
T Consensus 48 ~aDWLQGpY~Y~LY~~yg~--~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L 124 (354)
T PF05631_consen 48 AADWLQGPYLYALYESYGF--SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVL 124 (354)
T ss_pred HHHHhhcchhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHH
Confidence 3444555666556678999 999999999999999999999999999999999999999999998886 4556889999
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhh-hcC----CcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHH
Q 009536 181 LWGRFLVGLGIGVNTVLVPIYIS-EVA----PTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLP 253 (532)
Q Consensus 181 ~~~r~l~G~~~g~~~~~~~~~i~-~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~-~wr~~f~~~~~~ 253 (532)
+++|++.|++.+..+.+--+++. |.- |++..+..++... .++++-.+++.+++.++.+..+ +-..+|....+.
T Consensus 125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~ 204 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVL 204 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999998887753 432 2222233333222 2233334455555555544333 136778877777
Q ss_pred HHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHH
Q 009536 254 GFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGA 332 (532)
Q Consensus 254 ~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (532)
.++..++... -+|+.. +..+ .. +..+..+..++.+.++++ .+....
T Consensus 205 l~~~~~~I~~~W~ENyg------~~~~-------------~~-----------~~~~~~~~a~~~i~~d~r---il~LG~ 251 (354)
T PF05631_consen 205 LAVAAVLILKTWPENYG------DTSS-------------SS-----------SLSGSFREAWRAILSDPR---ILLLGL 251 (354)
T ss_pred HHHHHHHHHhcccccCC------Cccc-------------cc-----------chHHHHHHHHHHHHcCch---hHHHHH
Confidence 7666555443 233321 0000 00 000001123344555554 344445
Q ss_pred HHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhh
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDK 385 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 385 (532)
...++....+..+..|.|.+-.+.....-|+++..+.++.++|+.+..++..+
T Consensus 252 ~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 252 IQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555566666666667765421122245888888888889998888665554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=125.60 Aligned_cols=170 Identities=22% Similarity=0.162 Sum_probs=121.5
Q ss_pred HHHHHHHhhhhhhccccccchhHHH-HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhH--HHH------H
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR--TFQ------I 159 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~--~l~------~ 159 (532)
+....+..+.............|.+ .+++|. +..+.+++.+...++..++.++.|+++||+|||+ ... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGL--SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 3444444455555555555556654 456787 8888999999999999999999999999999996 111 1
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 160 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
+.++..+........++.+..+...++.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 295 AGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 111111112222222344444444555555544 7889999999999999999999999999999999999999999887
Q ss_pred cchhHHHHHhhHHHHHHHHHHh
Q 009536 240 PHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
.+.|++.|++.++..++..+..
T Consensus 374 ~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 374 TGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 6658999988887776655544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=127.97 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=126.0
Q ss_pred HHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
++.+++..++...........+|. +.+++|. +..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGF--SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 444455555544444444555664 5567888 8888899999999999999999999999999998877665544443
Q ss_pred HHH--HHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH-HHHHHHHhcCCCCC------
Q 009536 168 AII--SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAED------ 238 (532)
Q Consensus 168 ~~~--~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~------ 238 (532)
..+ ....++.+.+.+++++.|++...........+.|.+|+++||.+.|+.+....+ |..++|.+.|.+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~ 417 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT 417 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence 322 233456777778888888654433333345677999999999999999988886 77899999998888
Q ss_pred ------CcchhHHHHHhhHHHHHHHHHHhcc
Q 009536 239 ------DPHWWRTMLYIASLPGFILALGMQF 263 (532)
Q Consensus 239 ------~~~~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
..+ |+..|++.++..++..+..++
T Consensus 418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 418 PIFGYTLTG-WAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred ccccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence 456 999999887777766555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-12 Score=121.44 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=115.4
Q ss_pred hcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCC
Q 009536 339 FAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD 415 (532)
Q Consensus 339 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
..+......+++.+++ +.+.+ +.++......++.+++.++.|+++||+|||+.+..+.++.+++.+++.+.
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~------ 93 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV------ 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH------
Confidence 3344455555565554 45766 45777777888899999999999999999999988888877777766552
Q ss_pred ccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHH
Q 009536 416 EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGG 495 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~ 495 (532)
++...................+....+..|..|+++|+++.|+.+...++|.+++|.+.+.+.+ .||+..|.+.++
T Consensus 94 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~ 169 (395)
T PRK10054 94 ---NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAI 169 (395)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHH
Confidence 2222222222122212122345566778899999999999999999999999999999998875 689999988777
Q ss_pred HHHHHHHhhheeeccC
Q 009536 496 VSLLSALFAYYFIVET 511 (532)
Q Consensus 496 ~~~~~~~~~~~~~~~~ 511 (532)
+.++..++..+..++.
T Consensus 170 ~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 170 CSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7766655544444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=128.46 Aligned_cols=158 Identities=15% Similarity=0.051 Sum_probs=133.9
Q ss_pred cchhHHHHHh-hCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHH
Q 009536 107 NGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185 (532)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~ 185 (532)
...+|.+.++ +|. +..+.|++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.+
T Consensus 243 ~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADEVWQM--GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHhccCC--ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3455666666 888 7888999999999999999999999999988888888888888888888888888888888999
Q ss_pred HHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHH-HHHhccc
Q 009536 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL-ALGMQFT 264 (532)
Q Consensus 186 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~-~~~~~~~ 264 (532)
+.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.|.+.+..+ ++..+++.+...++. .+.....
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999888888888899999999999999999999999999999999999998877 788887766665554 4444445
Q ss_pred ccC
Q 009536 265 VES 267 (532)
Q Consensus 265 ~~~ 267 (532)
++.
T Consensus 400 ~~~ 402 (417)
T PRK10489 400 GEL 402 (417)
T ss_pred ccc
Confidence 554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=125.06 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=125.4
Q ss_pred chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 009536 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLV 187 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~ 187 (532)
..+|.+.++.|. +..+.+++.+.+.++..+++++.|++.||+|+|+++..+..+.+++.+... . ...+....++.
T Consensus 221 ~~lp~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~ 295 (381)
T PRK03633 221 GLMPLYLNHQGM--SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL 295 (381)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence 346777777787 788889999999999999999999999999999999988888777665443 2 23445677888
Q ss_pred hhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009536 188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 188 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|++.....|...+++.|..|+++++.+.+.+....++|..+||.++|++.++.+ |++.|.+.+...++..+..++.
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhc
Confidence 888888889999999999998888888888888999999999999999998888 9999999888877666555544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=121.55 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
+..++...+.++..+.......+..+.+.++.+.+ +.++......++..++.+..|++.||+|||+++..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33444444444455555555666667666777666 4577888888999999999999999999999999998888888
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 403 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
.++..+. .+...+...- +..+.+.+ ..+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.
T Consensus 87 ~~~~~~~---------~~~~~l~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 87 STATMFA---------TGPESLYLLR-ILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHh---------cCHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777662 2222222222 22333333 34666677899999999999999999999999999999999887
Q ss_pred H------hhCcchhhHhHHHHHHHHHHhhheeeccCC
Q 009536 482 E------TFGVAPVYAGFGGVSLLSALFAYYFIVETK 512 (532)
Q Consensus 482 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (532)
+ ..||+..|.+.++..++..++.++++||++
T Consensus 157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 5 358999999888777776666666677654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9e-12 Score=121.38 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=117.7
Q ss_pred HHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHH
Q 009536 346 LYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 423 (532)
Q Consensus 346 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (532)
....|.+.++.+.+ +.++......++..++.+..|++.||+|||+++..+..+..++.+...+. ++...
T Consensus 29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------~~~~~ 99 (390)
T PRK03545 29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA---------WNFTV 99 (390)
T ss_pred HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh---------ccHHH
Confidence 33467777777766 44677777778888889999999999999999999988888887777662 22222
Q ss_pred HHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHH
Q 009536 424 ILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 502 (532)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 502 (532)
+.. .-+..+.+.+ ..+....++.+.+|+++|+++.|+......+|..++|.+.+.+.+..||+..|++.+++.++..+
T Consensus 100 l~~-~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~ 178 (390)
T PRK03545 100 LLI-SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLL 178 (390)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 222 2222333322 34556678889999999999999999999999999999999999999999999998887777665
Q ss_pred hhheeeccC
Q 009536 503 FAYYFIVET 511 (532)
Q Consensus 503 ~~~~~~~~~ 511 (532)
..+...|+.
T Consensus 179 ~~~~~~~~~ 187 (390)
T PRK03545 179 LLIKLLPLL 187 (390)
T ss_pred HHHHhCCCC
Confidence 555545543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=127.04 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=122.4
Q ss_pred HHHhhhhhhccccccchhHHHH-HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH--H
Q 009536 93 SMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA--I 169 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~--~ 169 (532)
....+............+|.+. +++|. +..+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..+.. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (394)
T TIGR00883 225 LGLVIATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445566555 67787 78888999999999999999999999999999998876655544333 2
Q ss_pred HHHh--hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHh-HHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 009536 170 ISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTM 246 (532)
Q Consensus 170 ~~~~--a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~wr~~ 246 (532)
...+ .++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. +.+..+|..++|.+++.+.+..+.|++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~ 382 (394)
T TIGR00883 303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382 (394)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhH
Confidence 2222 246777778889999999899999999999999999999999984 5667789999999999998876658877
Q ss_pred HHhhHHHHH
Q 009536 247 LYIASLPGF 255 (532)
Q Consensus 247 f~~~~~~~~ 255 (532)
++..+...+
T Consensus 383 ~~~~~~~~l 391 (394)
T TIGR00883 383 GYYLAALAL 391 (394)
T ss_pred HHHHHHHHH
Confidence 776655444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=123.73 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=135.7
Q ss_pred HHHHhhhhhhccccccchhHHHH-HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 170 (532)
+.+..++.......+...+|.+. +++|. +..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+..++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGM--SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 33333443333334445566555 66788 8888999999999999999999999999999999999888887777777
Q ss_pred HHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhh
Q 009536 171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA 250 (532)
Q Consensus 171 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~ 250 (532)
....++.+.+.+..++.|++.+..++...++..+..+++ +++..+.......+|..++|.+.+++.+..+ |+..+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~ 365 (394)
T PRK03699 288 FVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTA 365 (394)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhh
Confidence 777788877778888999988888888888888877644 6778888888899999999999999998888 99999988
Q ss_pred HHHHHHHHHHhccccc
Q 009536 251 SLPGFILALGMQFTVE 266 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (532)
++..++..+.....++
T Consensus 366 ~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 366 NGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776665555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=120.85 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=121.9
Q ss_pred chhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
.........|.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+..+.+++.+.+...
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 3344444567777777766 45777888889999999999999999999999999888888877776652
Q ss_pred hhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHH
Q 009536 419 SHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
+.. .......+..+.+.+ ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+++.
T Consensus 91 ~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 169 (385)
T TIGR00710 91 NNI-ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAG 169 (385)
T ss_pred ccH-HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 122 222222233333333 245667788999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHhhheeeccCC
Q 009536 498 LLSALFAYYFIVETK 512 (532)
Q Consensus 498 ~~~~~~~~~~~~~~~ 512 (532)
++..+..++..||.+
T Consensus 170 ~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 170 ILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHhCCCCC
Confidence 776666655555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-12 Score=123.80 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=126.1
Q ss_pred HHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHH-HhhHHHHHHHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-IDTIPLILGAII 170 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~ 170 (532)
..+..+.............|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||+.+. .+.+..+++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~ 304 (402)
T TIGR00897 227 GGMVRIINTIGLFGFAVFLPMFVAELGF--STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA 304 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3333444444444445567778888888 7888899999999999999999999999999988764 333334443333
Q ss_pred HHh-----hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 009536 171 SAQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT 245 (532)
Q Consensus 171 ~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~ 245 (532)
+.+ .++++.++++.++.|++.+...+. ...+.|..| ++|+++.|+.+....+|..++|.+++.+.+..+ |+.
T Consensus 305 l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~ 381 (402)
T TIGR00897 305 LYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIG 381 (402)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHH
Confidence 332 246777778899999988876554 456677655 579999999999999999999999999999888 999
Q ss_pred HHHhhHHHHHHHHHHhccc
Q 009536 246 MLYIASLPGFILALGMQFT 264 (532)
Q Consensus 246 ~f~~~~~~~~~~~~~~~~~ 264 (532)
.|++.++..++..+...|+
T Consensus 382 ~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 382 VVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888877766655543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-12 Score=115.67 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISML 404 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 404 (532)
.++...+.....+..--.+..-.|.+.++.+.+ +.+...+.+.+.-.++.++.|.++||.+.|..+..++++.++..+
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ni 109 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNI 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHH
Confidence 344434443333444445556667777777666 558888889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHH--HHHH
Q 009536 405 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF--LDLV 481 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~--g~l~ 481 (532)
++.+ .....+..++...-+...+. +|.+...+.+-+|+++||+..++.|+..|+|+++.|++. +.+.
T Consensus 110 l~Gf----------s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 110 LFGF----------SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHhh----------hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 9988 33445555555555544444 477778888999999999999999999999999999999 9999
Q ss_pred HhhCcchhhHhHHHHHHHHHHhhheeeccC
Q 009536 482 ETFGVAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
++.+|+..|++-++++++..++.++..+++
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888999999999999988888877766544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=121.53 Aligned_cols=170 Identities=21% Similarity=0.222 Sum_probs=123.8
Q ss_pred HHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHH
Q 009536 332 ALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA 409 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
.+..+..........++.|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+.+++.+++...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
T TIGR00895 23 FLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA 102 (398)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333334445566777777777766 44677777888899999999999999999999998888877777666552
Q ss_pred hcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 009536 410 TSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP 488 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~ 488 (532)
.+. .......+..+++.+ ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+.
T Consensus 103 ---------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 172 (398)
T TIGR00895 103 ---------TNV-TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRS 172 (398)
T ss_pred ---------cch-HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccccee
Confidence 122 222223333333333 346677889999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHhhheeeccC
Q 009536 489 VYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
.+.+.+++.++..++.+.+.++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 173 LFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred ehhhhhhHHHHHHHHHHHhCCCC
Confidence 98887666665555555555554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=118.98 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=116.3
Q ss_pred HhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHH
Q 009536 347 YFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSI 424 (532)
Q Consensus 347 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (532)
...|.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+.++.+++.++..+. ++...+
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---------~~~~~l 111 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA---------NSFSLL 111 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH---------ChHHHH
Confidence 3456677777766 44777777888899999999999999999999999999988877776652 222222
Q ss_pred HHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHh
Q 009536 425 LGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 425 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 503 (532)
.. .-+..+.+.+ ..+....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..||+..|++.+++.++..+.
T Consensus 112 ~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 112 LI-GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HH-HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 22 2222333222 346677788899999999999999999999999999999999999999999998877766655544
Q ss_pred hheeeccC
Q 009536 504 AYYFIVET 511 (532)
Q Consensus 504 ~~~~~~~~ 511 (532)
.....|+.
T Consensus 191 ~~~~~p~~ 198 (394)
T PRK10213 191 IIKSLPSL 198 (394)
T ss_pred HHHHCCCC
Confidence 43334543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=129.06 Aligned_cols=147 Identities=20% Similarity=0.091 Sum_probs=116.0
Q ss_pred ccchhHHHH-HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh--hcHHHHHH
Q 009536 106 MNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLW 182 (532)
Q Consensus 106 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~ 182 (532)
....+|.+. +++|. +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++.... .+.+.+.+
T Consensus 294 ~~~~lp~~l~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (496)
T PRK03893 294 IQALLPTYLKTDLGY--DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371 (496)
T ss_pred HHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345567666 58888 88899999999999999999999999999999999998887776665544433 33444445
Q ss_pred HHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009536 183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (532)
Q Consensus 183 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 255 (532)
..++.|+......+....++.|.+|+++|++++++......+|..+||.+++.+.+..+ |+..+.+.+....
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~ 443 (496)
T PRK03893 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSLT 443 (496)
T ss_pred HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHH
Confidence 55555544444556677789999999999999999999999999999999999999888 8888766554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=120.44 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=126.7
Q ss_pred hhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh-cH
Q 009536 99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH-SL 177 (532)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-~~ 177 (532)
...........+|.+.+++|. +..+.|...+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +.
T Consensus 217 ~~~~~~~~~~~lp~~l~~~g~--s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (393)
T PRK09705 217 INGGYASLIAWLPAFYIEIGA--SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL 294 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH
Confidence 333443444556666677888 888899999999999999999999999999999999999888877766655333 22
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcCC-cccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHH
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI 256 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 256 (532)
..+. -++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..++|...|++.++.+++
T Consensus 295 ~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (393)
T PRK09705 295 PVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG 372 (393)
T ss_pred HHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 2222 345688888888877777777775 5779999999999999999999999999998876688888887777776
Q ss_pred HHHHh-cccccC
Q 009536 257 LALGM-QFTVES 267 (532)
Q Consensus 257 ~~~~~-~~~~~~ 267 (532)
..+.. .+.||+
T Consensus 373 ~~~~~~~~~~~~ 384 (393)
T PRK09705 373 LMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHhcccc
Confidence 55443 445554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=119.54 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=124.0
Q ss_pred ccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHH
Q 009536 106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185 (532)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~ 185 (532)
.....|.+.+|.|. +..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..+
T Consensus 224 ~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (382)
T PRK11128 224 YYGFSAIYWQAAGY--SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQI 301 (382)
T ss_pred HHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33445556677888 8888899999999999999999999999999999999999999998888888999999999999
Q ss_pred HHhhhhhhhhhhhhHhhhhcCCcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHH
Q 009536 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL 259 (532)
Q Consensus 186 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 259 (532)
+.|++.+...+....++.+. +++++++..+++. ....+|..+||.++|.+.+..+ + ..|+..+.+.++.++
T Consensus 302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence 99999999999999888887 5556788888886 5567888999999999999887 6 456666655554433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.4e-11 Score=117.59 Aligned_cols=158 Identities=8% Similarity=-0.011 Sum_probs=108.8
Q ss_pred chhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
.......+.+.+.++.+.+. .++......++..++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus 51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------- 121 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--------- 121 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---------
Confidence 33445556677777887763 3566666778888999999999999999999888887777776666552
Q ss_pred hhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH---------hhCcchh
Q 009536 419 SHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE---------TFGVAPV 489 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~---------~~g~~~~ 489 (532)
.+...+. +..+..+++.+.......++.|.+|+++|+.+.|+.+...++|..+++.+.+.+.. ..||+..
T Consensus 122 ~s~~~l~-~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~ 200 (476)
T PLN00028 122 SSATGFI-AVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA 200 (476)
T ss_pred cCHHHHH-HHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 1122222 22222233222222234567899999999999999998888888888777765532 1479999
Q ss_pred hHhHHHHHHHHHHhhheee
Q 009536 490 YAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ 508 (532)
|.+.+++.++..++.+++.
T Consensus 201 f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 201 FFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9988888777666554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-12 Score=125.15 Aligned_cols=179 Identities=13% Similarity=-0.010 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 165 (532)
+..+....+..+.............|.+.+++|. +..+.++....+.++..++.++.|+++||+|||+.+.++.++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 360 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV--STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMA 360 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344444444454444455555667888888898 66778899999999999999999999999999999999988888
Q ss_pred HHHHHHHhh-----h------cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcC
Q 009536 166 LGAIISAQA-----H------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (532)
Q Consensus 166 ~~~~~~~~a-----~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 234 (532)
++.++.++. + +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~ 440 (481)
T TIGR00879 361 ICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP 440 (481)
T ss_pred HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776621 1 23333333333333333345666778899999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccC
Q 009536 235 PAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (532)
Q Consensus 235 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~ 267 (532)
.+.+..+ |++.|++.++++++..+..++ .+|+
T Consensus 441 ~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 441 TMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred HHHHhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence 8888777 999999988888776665544 4543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=122.26 Aligned_cols=176 Identities=13% Similarity=-0.019 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISML 404 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 404 (532)
.+...++..+....-.+....-.|.+.++.+.+ +.++....+.++..++.+..|+++||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344445555555555666777788888888765 557788888888889999999999999999999999999988888
Q ss_pred HHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccc-cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 405 LVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPEL-SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
+.... ++...++..-++.+....+..+.....+.+. .|+++|+++.|+......+|..+||.+.+.+.++
T Consensus 87 ~~~~a---------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 87 AAAFS---------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 87762 2222222222222222222334444445454 4678899999999999999999999999999999
Q ss_pred hCcchhhHhHHHHHHHHHHhhheeeccC
Q 009536 484 FGVAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
.||++.|++...+.++..++.+++.|+.
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999988877777666665556654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=115.20 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=112.3
Q ss_pred hhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc-CCchhhhhhHHHHHHHHHHHHHHhcCC
Q 009536 338 QFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLP 413 (532)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (532)
....++.+..+++.++.+ .+.+ +++.....+.....++.+++|+++||+ |||+.+.++.++..++.+++....
T Consensus 21 e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--- 97 (493)
T PRK15462 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh---
Confidence 333455566677777654 4655 446666777788888999999999999 999999999988888876654310
Q ss_pred CCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 009536 414 LDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVY 490 (532)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~ 490 (532)
...........+ ...+.+. .+...+++.|.+|++ +|+++.++.+...++|+.++|.+.+++.+..||+..|
T Consensus 98 ----~~~~~~~l~l~l--i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F 171 (493)
T PRK15462 98 ----IHPSFLYLSLAI--IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF 171 (493)
T ss_pred ----cchhHHHHHHHH--HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence 011111111222 2223333 355567889999875 6999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhh
Q 009536 491 AGFGGVSLLSALFA 504 (532)
Q Consensus 491 ~~~~~~~~~~~~~~ 504 (532)
.+.++..+++.+..
T Consensus 172 ~iaaigm~l~li~~ 185 (493)
T PRK15462 172 GLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=118.06 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=123.4
Q ss_pred HHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHh
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 410 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
...+.............|.+.++.+.+. .++......++..++.++.|+++||+|||+.+..+..+..++..++...
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~- 88 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA- 88 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-
Confidence 3333344444455566777778877764 4666777788889999999999999999999998888888777766652
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 009536 411 SLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV 489 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~ 489 (532)
++...+.. ..+..+.+.+. .+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..
T Consensus 89 --------~~~~~~~~-~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~ 159 (392)
T PRK10473 89 --------ETSSLFLA-GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSL 159 (392)
T ss_pred --------CcHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHH
Confidence 11222222 22223333332 355667888999999999999999999999999999999988888899999
Q ss_pred hHhHHHHHHHHHHhhheeeccCC
Q 009536 490 YAGFGGVSLLSALFAYYFIVETK 512 (532)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~ 512 (532)
+++.+++.++..++.+...+|++
T Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 160 FYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 98888777776666555555543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=124.62 Aligned_cols=169 Identities=14% Similarity=0.060 Sum_probs=127.1
Q ss_pred HHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHh
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 410 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
+..+.............|.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 87 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-
Confidence 333333444555666778888888765 45788888899999999999999999999999999988888877776552
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 009536 411 SLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPV 489 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~ 489 (532)
.+...+ ....+..+.+.+ ..+....++.|.+|+++|+++.++......+|..++|.+.+.+.++.||++.
T Consensus 88 --------~~~~~l-~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~ 158 (485)
T TIGR00711 88 --------PNLELM-IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWI 158 (485)
T ss_pred --------CCHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceeh
Confidence 222222 223333333333 3466778889999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhheeeccC
Q 009536 490 YAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
|++.+.+.++..++..+..++.
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 159 FLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hhhhhHHHHHHHHHHHHHcCCc
Confidence 9887777666665555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.1e-11 Score=115.54 Aligned_cols=176 Identities=16% Similarity=0.069 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
++.+....+..+.............+.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444444444444445555666667777777665 4577778888999999999999999999999999888888877
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 403 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
.++..+. .+...+ ....+..+.+. ...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.
T Consensus 91 ~~~~~~~---------~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 91 TLACGFA---------PGYITM-FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHHHh---------ccHHHH-HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766652 122222 22223333332 234556678889999999999999999999999999999999988
Q ss_pred HhhC--cchhhHhHHHHHHHHHHhhheeeccC
Q 009536 482 ETFG--VAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 482 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
+..+ |+..|.+.+...++.. +.....||.
T Consensus 161 ~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~ 191 (405)
T TIGR00891 161 PVWGDGWRALFFISILPIIFAL-WLRKNIPEA 191 (405)
T ss_pred HhcCccHHHHHHHHHHHHHHHH-HHHHhCCCC
Confidence 8776 8888876554444433 333344554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=119.10 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=119.6
Q ss_pred hhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch
Q 009536 342 INGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
...+....|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+..++.+++.+. .
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------~ 81 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------T 81 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---------h
Confidence 344455566666666665 55788888899999999999999999999999999998888888777662 2
Q ss_pred hhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhhHhHHHHH
Q 009536 420 HNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG-LFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~-~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
+. ....+..+..+.+.+ ..+....++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|+..|++.+++.
T Consensus 82 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 82 SL-WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred hH-HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 22 222223333333333 3567778899999999999999999999999999999 46666667788999988888777
Q ss_pred HHHHHhhheeeccC
Q 009536 498 LLSALFAYYFIVET 511 (532)
Q Consensus 498 ~~~~~~~~~~~~~~ 511 (532)
++..++.+++.++.
T Consensus 161 ~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 161 IIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHheeeCCC
Confidence 77666666666554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=107.82 Aligned_cols=344 Identities=13% Similarity=0.073 Sum_probs=199.7
Q ss_pred HHHHHh-hCCCCChhHH-HHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHh
Q 009536 111 VSIAKE-LGFEGNPILE-GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVG 188 (532)
Q Consensus 111 ~~~~~~-~~~~~~~~~~-~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G 188 (532)
|.+.+. .|+ +..|+ .-+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++-|
T Consensus 28 ~yL~~~~kn~--T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg 105 (412)
T PF01770_consen 28 PYLTGPDKNF--TEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG 105 (412)
T ss_pred HHHcCCccCC--CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 444443 566 55554 34555666677788999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHHHHHHhcccccC
Q 009536 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVES 267 (532)
Q Consensus 189 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~~ 267 (532)
++.+ ...+.++++-...++++-.++.+...+...+|-.++.++|..+....+ ..+...++......+.++..+++|..
T Consensus 106 ~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 106 LATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9987 477788899999999988999999999898998888888887765322 26777777666666667777777765
Q ss_pred hhHHhhcCChhHHHHHHHHHcCC--cchHHHHHHHHHHHHhccCC-------CcchhhhhhcCCcchHHHHHHHHHHHhh
Q 009536 268 PRWLCKGGMLNDAKAVIANLWGE--SEINKAIEEFQLVIKKDGSD-------LDSQWSELLEEPHSRVAFIGGALFLLQQ 338 (532)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (532)
++-..-+++...... ..+.... ++..+...+..+.....+.. ....+++..+++. ++...+.+...
T Consensus 185 ~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~----ll~WSlWWa~a 259 (412)
T PF01770_consen 185 KRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR----LLLWSLWWAFA 259 (412)
T ss_pred CcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHH
Confidence 542211111100000 0000000 00000000000000000000 0112233334443 33334444455
Q ss_pred hcchhhHHHhHHHHHHHcCCC-----hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHH--HHHHHHHHHhc
Q 009536 339 FAGINGVLYFSSLTFQDVGIT-----DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMA--ISMLLVVGATS 411 (532)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~--~~~~~~~~~~~ 411 (532)
.+++..+..|.....++...+ -.|.+-....+.+.++.+..|++..++.+..-+.++..-.. ..++++...
T Consensus 260 tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t-- 337 (412)
T PF01770_consen 260 TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT-- 337 (412)
T ss_pred HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 556667777777777766111 12555666667777788888888666555444333333222 223333321
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHH
Q 009536 412 LPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNF 471 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 471 (532)
.+.+......+++...+.. ..++....++.....+.-|..+|+.+++..+-..
T Consensus 338 ------~~Iwv~Y~~yIif~~~y~f-liTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 338 ------GNIWVCYAGYIIFRSLYMF-LITIASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred ------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 1222222222222222222 2333344444555566678888877665544333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=116.32 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=120.7
Q ss_pred chhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
.........|.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+..+.+++.++..+.
T Consensus 18 ~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--------- 88 (382)
T PRK10091 18 AEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--------- 88 (382)
T ss_pred hHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3344555667777777766 45778888899999999999999999999999999999888888777662
Q ss_pred hhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHH
Q 009536 419 SHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
++...+.. .-+..+.+.+. .+.....+.+.+|+++|+.+.++......++..+++.+.+.+.+..||+..|.+.+++.
T Consensus 89 ~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 89 SSYLMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN 167 (382)
T ss_pred CcHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence 22222222 22233333222 34455667888899889999999999999999999999999999899999999888777
Q ss_pred HHHHHhhheeeccCC
Q 009536 498 LLSALFAYYFIVETK 512 (532)
Q Consensus 498 ~~~~~~~~~~~~~~~ 512 (532)
++..+..+...|+.+
T Consensus 168 ~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 168 IAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHhCCCCC
Confidence 666655555566543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=118.97 Aligned_cols=169 Identities=13% Similarity=-0.003 Sum_probs=122.4
Q ss_pred HHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHH
Q 009536 332 ALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGA 409 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
....+.............|.+.++.+.+. .++......++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 16 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 95 (471)
T PRK10504 16 AFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS 95 (471)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445556667888888888774 3566677778888999999999999999999988877777776655441
Q ss_pred hcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 009536 410 TSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP 488 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~ 488 (532)
.+...+ ....+..+.+.+ ..+....++.|.+|+++|+++.|+.+...++|..++|.+.|.+.+..||++
T Consensus 96 ---------~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~ 165 (471)
T PRK10504 96 ---------GTLNEL-LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW 165 (471)
T ss_pred ---------CCHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHH
Confidence 112222 222222333322 345667778899999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHhhheeecc
Q 009536 489 VYAGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~ 510 (532)
.|.+...+..+..++.....++
T Consensus 166 ~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 166 IFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 9988777666666555444444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=121.54 Aligned_cols=159 Identities=21% Similarity=0.174 Sum_probs=138.6
Q ss_pred hhccccccchhHHHH-HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHH
Q 009536 100 GYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178 (532)
Q Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~ 178 (532)
++....+...+|.+. +++|. ++...|++.+++.+|..++.++.+++.+|+++++++..+.++++++.+..+++++.+
T Consensus 231 ~l~~~a~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~ 308 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFW 308 (524)
T ss_pred HHhhhHHHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHH
Confidence 333444445677665 45777 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHH
Q 009536 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258 (532)
Q Consensus 179 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 258 (532)
..+++-++.|++.........+.+.+..|++.|||+++++.+....+..+|.++.|.+.+..+ -+..+.+.++..++..
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888 8888887776555544
Q ss_pred HHh
Q 009536 259 LGM 261 (532)
Q Consensus 259 ~~~ 261 (532)
++.
T Consensus 388 ~~~ 390 (524)
T PF05977_consen 388 LIA 390 (524)
T ss_pred HHH
Confidence 433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=113.96 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=112.2
Q ss_pred hHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhh
Q 009536 344 GVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN 421 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (532)
.+....|.+.++.+.+ +.++....+.++..++.+..|+++||+|||+++.........+...... ...
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~----------~~~ 78 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD----------PFN 78 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH----------hcc
Confidence 4455667777777766 4467777788899999999999999999988765544433333221111 011
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHH
Q 009536 422 LSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 501 (532)
...+...-+..+.+.+..+.......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..
T Consensus 79 ~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 79 YEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 22222232333333333333445557889999999999999999999999999999999999999999998888887777
Q ss_pred HhhheeeccCC
Q 009536 502 LFAYYFIVETK 512 (532)
Q Consensus 502 ~~~~~~~~~~~ 512 (532)
++.++..||..
T Consensus 159 ~~~~~~lp~~p 169 (368)
T TIGR00903 159 ILVLAALPALP 169 (368)
T ss_pred HHHHHHcCCCC
Confidence 76666777643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-11 Score=115.54 Aligned_cols=159 Identities=17% Similarity=-0.000 Sum_probs=114.7
Q ss_pred hhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch
Q 009536 342 INGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
........|.+..+.+.+ +.++......++..++.++.|+++||+|||+.+..+..+..++..++....... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~ 90 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG----GL 90 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC----CC
Confidence 334444556666666555 457777888899999999999999999999999988887777766665532110 00
Q ss_pred hhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHH
Q 009536 420 HNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 498 (532)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 498 (532)
+...+.. ..+..+.+.+ ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|++.++..+
T Consensus 91 ~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 169 (365)
T TIGR00900 91 NIWQVYV-LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFA 169 (365)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222222 2222233333 3466778899999999999999999999999999999999999999999999887776665
Q ss_pred HHHHhhh
Q 009536 499 LSALFAY 505 (532)
Q Consensus 499 ~~~~~~~ 505 (532)
+..+..+
T Consensus 170 ~~~~~~~ 176 (365)
T TIGR00900 170 ISALLIV 176 (365)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=118.97 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=113.9
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHh---h-hcHHHHHHHHHHH
Q 009536 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ---A-HSLDEMLWGRFLV 187 (532)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a-~~~~~l~~~r~l~ 187 (532)
.+.+++|. +......+.....+...++.++.|+++||+|||++++.+.++.+++.+.+.. . ++.+.+++..++.
T Consensus 276 y~~~~~g~--s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (438)
T PRK09952 276 YSTQNLGL--PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA 353 (438)
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44567787 6655555555666677888999999999999999999887766655443332 2 2344455566777
Q ss_pred hhhhhhhhhhhhHhhhhcCCcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCc-chhHHHHHhhHHHHHHHHHHhcccc
Q 009536 188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQFTV 265 (532)
Q Consensus 188 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
|++.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+++.+.. ++|+..+...++..++..+..+.++
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 88888888888999999999999988888854 455689999999999887643 2388888887777777666666565
Q ss_pred cC
Q 009536 266 ES 267 (532)
Q Consensus 266 ~~ 267 (532)
|+
T Consensus 434 ~~ 435 (438)
T PRK09952 434 DN 435 (438)
T ss_pred cc
Confidence 53
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=114.47 Aligned_cols=161 Identities=9% Similarity=0.012 Sum_probs=118.1
Q ss_pred HHHhhhcchhhHHHhHHHHHHH---cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHH
Q 009536 334 FLLQQFAGINGVLYFSSLTFQD---VGIT--DGALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVV 407 (532)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~ 407 (532)
..+.....++....+++.++++ .+.+ +++.....+.++..++.+++|+++|| +|||+++.++..+.+++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3333344555666677777765 4554 56788888889999999999999999 8999999999999988887776
Q ss_pred HHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 408 GATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR---TRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
+. ..... ........+.+.+. .+....++.+.+|++ +|+++.++.+...++|..++|.+.+.+.+.
T Consensus 98 ~~---------~~~~~-~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~ 167 (475)
T TIGR00924 98 MS---------IYPDL-IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN 167 (475)
T ss_pred hc---------ccHhH-HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 62 11222 22222233344433 466667788888765 388999999999999999999999999999
Q ss_pred hCcchhhHhHHHHHHHHHHhh
Q 009536 484 FGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~ 504 (532)
.||+..|.+.++..+++.+..
T Consensus 168 ~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 168 YGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred cChHHHHHHHHHHHHHHHHHH
Confidence 999999988776555554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=117.33 Aligned_cols=157 Identities=19% Similarity=0.150 Sum_probs=116.9
Q ss_pred hhHHHhHH-HHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch
Q 009536 343 NGVLYFSS-LTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419 (532)
Q Consensus 343 ~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
.......+ .+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+.+++.++..+. .+
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~ 84 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------SN 84 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------CC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------hh
Confidence 33444455 444555544 55788888889999999999999999999999999999888885544431 12
Q ss_pred hhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHH
Q 009536 420 HNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 498 (532)
Q Consensus 420 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 498 (532)
.+ ......+..+.+ ....+....++.|.+|+++|++++++.+...++|..++|.+.+.+.+..||+..|++.+++.+
T Consensus 85 ~~--~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 85 FW--LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred HH--HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 22 233333333333 334577788899999999999999999999999999999999999988899999999998888
Q ss_pred HHHHhhheeec
Q 009536 499 LSALFAYYFIV 509 (532)
Q Consensus 499 ~~~~~~~~~~~ 509 (532)
+..++...+.+
T Consensus 163 ~~~il~~~~~~ 173 (352)
T PF07690_consen 163 IAAILFILFLP 173 (352)
T ss_dssp HHHHHHHCCC-
T ss_pred hhhhhHhhhhh
Confidence 88765334443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=114.09 Aligned_cols=154 Identities=16% Similarity=0.046 Sum_probs=113.1
Q ss_pred HHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 009536 349 SSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILG 426 (532)
Q Consensus 349 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
+|.+.++.+.+ ...+....+.++..++.++.|+++||+|||+++..+..+.+++.++.... ++...+..
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~~~~~l~~ 109 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---------TSMTQFLI 109 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---------CCHHHHHH
Confidence 34455566665 34666777788899999999999999999999999888888777766652 22222222
Q ss_pred HHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 427 TLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 427 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
.-+..+.+.+. .+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||+..|++.+++.++..+..+
T Consensus 110 -~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 110 -ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 3444567788999999999999999999999999999999999888999999988887777766555
Q ss_pred eeeccCC
Q 009536 506 YFIVETK 512 (532)
Q Consensus 506 ~~~~~~~ 512 (532)
+..||++
T Consensus 189 ~~lp~~~ 195 (413)
T PRK15403 189 LAMPETV 195 (413)
T ss_pred HhCCCCc
Confidence 5566653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=113.75 Aligned_cols=158 Identities=14% Similarity=0.012 Sum_probs=113.3
Q ss_pred HHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhH
Q 009536 345 VLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 422 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (532)
.....|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+..++.+..... .+..
T Consensus 27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---------~~~~ 97 (394)
T PRK11652 27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---------HSLT 97 (394)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------ccHH
Confidence 333456677777766 45777778889999999999999999999999998888877777666552 1122
Q ss_pred HHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHH
Q 009536 423 SILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 501 (532)
.+ ....+..+.+.+. .+....+..|.++.++++.+.++.+....++..++|.+.+.+.+..||+..|.+.+++.++..
T Consensus 98 ~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 98 VL-IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HH-HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 22 2222222222222 344455667888888899999999999999999999999999998899999988777666555
Q ss_pred HhhheeeccCC
Q 009536 502 LFAYYFIVETK 512 (532)
Q Consensus 502 ~~~~~~~~~~~ 512 (532)
++..++.||++
T Consensus 177 ~~~~~~~~~~~ 187 (394)
T PRK11652 177 FSMARWMPETR 187 (394)
T ss_pred HHHHHhCCccC
Confidence 54445556543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=114.70 Aligned_cols=174 Identities=14% Similarity=0.070 Sum_probs=121.6
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHH
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLV 406 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
+...+..+.............+.+.++.+.+. .++......++..++.++.|+++||+|||+.+..+..+.+++.+..
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 95 (406)
T PRK15402 16 LCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI 95 (406)
T ss_pred HHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33333333333334444445566667777663 4666777888899999999999999999999998888877777766
Q ss_pred HHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009536 407 VGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 485 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 485 (532)
... .+...+ ....+..+.+.+. .+.....+.|.+|++.|+++.++......++..++|.+.+.+.+..|
T Consensus 96 ~~~---------~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~ 165 (406)
T PRK15402 96 LLA---------QSIEQF-TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP 165 (406)
T ss_pred HHH---------ccHHHH-HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 552 112222 2222222322222 35556777899999999999999988888999999999999999889
Q ss_pred cchhhHhHHHHHHHHHHhhheeeccCC
Q 009536 486 VAPVYAGFGGVSLLSALFAYYFIVETK 512 (532)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (532)
|+..|++.+++.++..+..+...|+++
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999998888877776665555556543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=112.79 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=113.1
Q ss_pred hhHHHhHHHHH-HHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch
Q 009536 343 NGVLYFSSLTF-QDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419 (532)
Q Consensus 343 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
.....+.+.++ ++.+.+ ..++......+...+..++.|+++||+|||+.+..+..+.+++.+.+... +
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---------~ 97 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---------H 97 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---------c
Confidence 33444555444 455655 44666667777888888999999999999999999999888888877652 2
Q ss_pred hhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHH
Q 009536 420 HNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSL 498 (532)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 498 (532)
+.+.+.. ..+..+.+.+ ..+...+++.+.+|+++|+++.|+.+...++|..+||.+.+.+. ..||+..|++.+.+.+
T Consensus 98 ~~~~l~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~ 175 (400)
T PRK11646 98 EPWLLWL-SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV 175 (400)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 2222222 2222232222 34556677889999999999999999999999999999999998 6799999988777766
Q ss_pred HHHHhhheeecc
Q 009536 499 LSALFAYYFIVE 510 (532)
Q Consensus 499 ~~~~~~~~~~~~ 510 (532)
+..++..++.++
T Consensus 176 ~~~i~~~~~~~~ 187 (400)
T PRK11646 176 LAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHhCCc
Confidence 655544444454
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=116.31 Aligned_cols=160 Identities=16% Similarity=0.051 Sum_probs=116.7
Q ss_pred cccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh--cH-H-HH
Q 009536 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SL-D-EM 180 (532)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~-~-~l 180 (532)
......|.+.+++|. +.....+......+...++.++.|+++||+|||++++.+.++.+++.++++... +. . ..
T Consensus 289 ~~~~~~p~i~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 289 VVLYYAPEIFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred HHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 334456788888888 555556777778888899999999999999999999999999998888776432 21 1 22
Q ss_pred HHHHHHHhhhhhh-hhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcC------CCCCCcchhHHHHHhhHHH
Q 009536 181 LWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI------PAEDDPHWWRTMLYIASLP 253 (532)
Q Consensus 181 ~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~------~l~~~~~~wr~~f~~~~~~ 253 (532)
..+-++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+.+ ++.+..+ |++.|++.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 445 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence 2334444444443 33677889999999999999999999988888888754443 4445566 88889888877
Q ss_pred HHHHHHHhcc-cccC
Q 009536 254 GFILALGMQF-TVES 267 (532)
Q Consensus 254 ~~~~~~~~~~-~~~~ 267 (532)
+++..+..++ .||+
T Consensus 446 ~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 446 GVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHhccccC
Confidence 7766555544 4554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=110.65 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=111.0
Q ss_pred hcchhhHHHhHHH-HHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCC
Q 009536 339 FAGINGVLYFSSL-TFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD 415 (532)
Q Consensus 339 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
+........+.|. +.++.+.+ +.++......++..++.++.|+++||+|||+.+..+.++..++.+++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----- 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----- 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3344555666664 55666766 447777888899999999999999999999999999998888887776621
Q ss_pred ccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----------hC
Q 009536 416 EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET----------FG 485 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~----------~g 485 (532)
.+...+.. ..+..+.+.+..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+. .+
T Consensus 89 ---~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 89 ---QSYSVLLL-LRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred ---hhHHHHHH-HHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 02222222 22223333333444567788999999999999999988888888888888776653 36
Q ss_pred cchhh-HhHHHHHHHHHHhhheeecc
Q 009536 486 VAPVY-AGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 486 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 510 (532)
|++.| ...+++..+..++.+.+.++
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccc
Confidence 88888 43344444444433334333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-11 Score=117.85 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=115.8
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHH-hhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc--chhHHH-HHhhHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTF-QIDTIPL 164 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l-~~~~~~~ 164 (532)
++...+..++...........+|.+.+ ++|. +..+.+++...+.++..++.++.|+++||+ |||+.. .....+.
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 333444444433333344456666554 4687 777889999999999999999999999999 555432 2223333
Q ss_pred HHHHHHHHh--hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHH-HHHHhcCCCCCCcc
Q 009536 165 ILGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII-TSLFLGIPAEDDPH 241 (532)
Q Consensus 165 ~~~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~ 241 (532)
.++.++..+ ..+.+.++++.++.|.+..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 333 TIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 333333222 334555555556666544333333445678999999999999999888888765 57999999998888
Q ss_pred hhHHHHHhhHHHHHHHHHHhccc
Q 009536 242 WWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|+..|++.+..+++.++....+
T Consensus 413 -~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 413 -WDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred -chHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777765555443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-11 Score=114.79 Aligned_cols=139 Identities=13% Similarity=0.061 Sum_probs=120.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~ 201 (532)
+....|++.++..+...++.+..|++.||+|+|+.+.++.++.+++..+...++|.+.+++.++++|++..........+
T Consensus 252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 331 (396)
T TIGR00882 252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY 331 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888998889999999999999999999999999999999988887888999999999999999987776777778
Q ss_pred hhhcCCcccccchhhH-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009536 202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 202 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
+.+..+++.++...+. ++....+|..++++++|++.+..| |+..|.+.+++.++..+..
T Consensus 332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766 678899999999999999999888 9999999888877665443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-11 Score=116.99 Aligned_cols=177 Identities=19% Similarity=0.184 Sum_probs=159.7
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccc--hhHHHHHhhHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG--CRRTFQIDTIPL 164 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~ 164 (532)
+.++.+.++..+..+........+|.+.++.+. +..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL--SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence 346677777777778888888889999999998 8999999999999999999999999999988 667778888888
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
+++.+.++++++++.++..-.+.|++.|........++.|....++-..+.|+.....+++.++||++++.+.+..+.|.
T Consensus 376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999998887799
Q ss_pred HHHHhhHHHHHHHHHHhcccc
Q 009536 245 TMLYIASLPGFILALGMQFTV 265 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~~~~~~ 265 (532)
..|+..++..++..+.++..+
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eehhhcChHHHHHHHHHHHhH
Confidence 999999998888877776665
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=115.10 Aligned_cols=183 Identities=11% Similarity=0.079 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHHcCC--ChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGI--TDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLL 405 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 405 (532)
....++....+..--+.+....+..-+.++. +..++....+.+...+.+++.|++.||+.|++++.+|..+..++.++
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 3333444444444444444444443333344 35588888999999999999999999999999999999999888888
Q ss_pred HHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009536 406 VVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF 484 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 484 (532)
..+. . ..+.+.++=...+.+ ....|+..++++|.+|.++|++++++.+....+|..+|-.+.+.+.+..
T Consensus 115 ~~fs---------~-~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 115 SGFS---------N-HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHH---------H-HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 8772 2 233333333333333 3346888999999999999999999999999999999988888887777
Q ss_pred C-cchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHH
Q 009536 485 G-VAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIE 520 (532)
Q Consensus 485 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (532)
+ |++.|.+.+++.++.+++..++.+|.+++..++.+
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 7 99999999999999999888888877665444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=113.56 Aligned_cols=180 Identities=16% Similarity=0.096 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhhhhhhccc-cccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchh--HHHHHhhH
Q 009536 86 FPHVLIASMSNFLFGYHIG-VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTI 162 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~l~~~~~ 162 (532)
.+.+....++.++..-..+ ++........+++|+ +..+...+.-+..+..++|++++|++.||+|.| +++.++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~--s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGM--STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 3445555555554433333 333344455669999 888888888888999999999999999999999 89999988
Q ss_pred HHHHHHHHHHh--------hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcC
Q 009536 163 PLILGAIISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (532)
Q Consensus 163 ~~~~~~~~~~~--------a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 234 (532)
++.+..+...+ .++-+.+.+.-++.|++.|..++...++.++..|+++.+..+|++....-....+||++.+
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88666666555 5788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHhhHHHHHHHHHHhcccccC
Q 009536 235 PAEDDPHWWRTMLYIASLPGFILALGMQFTVES 267 (532)
Q Consensus 235 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 267 (532)
.+.+..+.-|+.+....++.++.+++.++++.+
T Consensus 438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 438 LITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 998887768999988888888877777666543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=113.93 Aligned_cols=146 Identities=19% Similarity=0.167 Sum_probs=110.3
Q ss_pred cchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCcc
Q 009536 340 AGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDED 417 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (532)
.......+..+.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+..+.+++.++..+.
T Consensus 32 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 103 (426)
T PRK12307 32 FDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-------- 103 (426)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 33444555666666777766 44677778889999999999999999999999999999888888776662
Q ss_pred chhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHH
Q 009536 418 FSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGG 495 (532)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~ 495 (532)
.+. ..+.+.-+..+.+.+ ..+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..||+..|++...
T Consensus 104 -~~~-~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 104 -SGV-IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred -hHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 222 222223333333333 3456667888999999999999999999999999999999988888899998876443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=112.55 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=118.1
Q ss_pred HHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHH
Q 009536 346 LYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 423 (532)
Q Consensus 346 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (532)
....|.+.++.+.+ +.++......++..++.++.|++.||+|||+.+..+..+.+++..++... .+...
T Consensus 11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---------~~~~~ 81 (377)
T PRK11102 11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---------QTIDQ 81 (377)
T ss_pred hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---------ccHHH
Confidence 34556666777665 45777788889999999999999999999999999988888887777652 11222
Q ss_pred HHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHH
Q 009536 424 ILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 502 (532)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 502 (532)
+. ...+..+++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+.+.+.++..+
T Consensus 82 ~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 82 LI-YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 22 22222233322 34556678889999999999999999999999999999999999999999999888877777666
Q ss_pred hhheeeccC
Q 009536 503 FAYYFIVET 511 (532)
Q Consensus 503 ~~~~~~~~~ 511 (532)
+..+..+++
T Consensus 161 ~~~~~~~~~ 169 (377)
T PRK11102 161 LVFFFIPET 169 (377)
T ss_pred HHHHhCCcc
Confidence 555555554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=113.85 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=110.3
Q ss_pred HHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHH
Q 009536 346 LYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 423 (532)
Q Consensus 346 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (532)
....|.+. +.+.+ +.++......++..++.++.|+++||+|||+.+..+.++.+++.+++...... .....
T Consensus 47 ~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 119 (438)
T TIGR00712 47 ALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA------TSSIA 119 (438)
T ss_pred HhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc------cchHH
Confidence 34445443 34554 55777888889999999999999999999999888887777776665442110 11122
Q ss_pred HHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhhHhHHHHHHHHH
Q 009536 424 ILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE-TFGVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~ 501 (532)
......+..+.+.+ ..+.....+.|.+|+++|++++|+.+...++++.+++.+.+...+ ..||+..|++.+++.++..
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~ 199 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVA 199 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22222222233222 234455677789999999999999999999999999988876554 4689999998888877766
Q ss_pred HhhheeeccC
Q 009536 502 LFAYYFIVET 511 (532)
Q Consensus 502 ~~~~~~~~~~ 511 (532)
++.+++.+|.
T Consensus 200 ~~~~~~~~~~ 209 (438)
T TIGR00712 200 LFAFAMMRDT 209 (438)
T ss_pred HHHHHhccCC
Confidence 6555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-10 Score=110.46 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=122.0
Q ss_pred hHHHHHhhCCCCChhHHHHHHH-HHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH---Hhh-hcHHHHHHHH
Q 009536 110 IVSIAKELGFEGNPILEGLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR 184 (532)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~s-~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r 184 (532)
.|.+.+++|. +..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..++. +.. ++.+.+.+.-
T Consensus 246 ~~~l~~~~G~--s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 246 TTFLIRGVGF--DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3455677888 8899999875 5568999999999999999999998887766655544332 233 4555555566
Q ss_pred HHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009536 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 185 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
+++.++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..| |+..|.+.++++++.++...++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666667778888999999999999999999999999988889999988887 9999999888888877766666
Q ss_pred ccC
Q 009536 265 VES 267 (532)
Q Consensus 265 ~~~ 267 (532)
+++
T Consensus 403 ~~~ 405 (491)
T PRK11010 403 RQT 405 (491)
T ss_pred Hhc
Confidence 543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-10 Score=109.17 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=109.6
Q ss_pred hHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 009536 348 FSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL 425 (532)
Q Consensus 348 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
..+.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+..++.++..+. .+...+.
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~ 98 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV---------ESAAQLL 98 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh---------cCHHHHH
Confidence 334455666665 44777778889999999999999999999999998888777777666552 1222222
Q ss_pred HHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhh
Q 009536 426 GTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 426 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 504 (532)
...+..+.+.+. .+.....+.|.+|+++++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..++.
T Consensus 99 -~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 99 -VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred -HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 222222222222 233456678889998899999999988999999999999999999999999988877777666555
Q ss_pred heeec
Q 009536 505 YYFIV 509 (532)
Q Consensus 505 ~~~~~ 509 (532)
+...+
T Consensus 178 ~~~~~ 182 (401)
T PRK11043 178 LRLKP 182 (401)
T ss_pred HHcCC
Confidence 44433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=116.11 Aligned_cols=162 Identities=18% Similarity=0.089 Sum_probs=108.1
Q ss_pred cchhHHHHHhhCCCCChhH---------HHH-HHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhc
Q 009536 107 NGPIVSIAKELGFEGNPIL---------EGL-VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS 176 (532)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~---------~~~-~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 176 (532)
....|.+.++.|.+.+... ... ...+..++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777778887322110 011 233344566678889999999999999999988887777666654321
Q ss_pred ----HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc---------chh
Q 009536 177 ----LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------HWW 243 (532)
Q Consensus 177 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------~~w 243 (532)
...+...-+...++.....+....+..|.+|.+.|+++.++.+....+|.++++.+.+.+.+.. .++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 467 (502)
T TIGR00887 388 HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM 467 (502)
T ss_pred hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccc
Confidence 1111111111222222344566677899999999999999999999999999999998887632 114
Q ss_pred HHHHHhhHHHHHHHHHHhcccccCh
Q 009536 244 RTMLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 244 r~~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
...|++.++.+++..+..+++||+.
T Consensus 468 ~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 468 GHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred hHHHHHHHHHHHHHHHHheEeccCC
Confidence 5677777777776666666778764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=113.63 Aligned_cols=149 Identities=14% Similarity=-0.010 Sum_probs=115.6
Q ss_pred hhHHHHHhhCCCCChhHHHHHHHHHH-HHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHh------hhcHHHHH
Q 009536 109 PIVSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ------AHSLDEML 181 (532)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a~~~~~l~ 181 (532)
..+.+.+|.|. +..+.|++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...++
T Consensus 230 ~~~~~l~~~G~--s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 230 LSKLYLVDAGW--PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred HhhHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 44556667888 8999999988876 466678899999999999999998887766443332221 23344455
Q ss_pred HHHHHHhhhhhhhhhhhhHhhhhcCCc-ccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009536 182 WGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (532)
Q Consensus 182 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 260 (532)
....+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..+ |+..|++.+++.++..+.
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence 566677777788888888887777776 788999999999999999999999999998887 999999887777665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-10 Score=109.28 Aligned_cols=153 Identities=10% Similarity=0.106 Sum_probs=107.5
Q ss_pred cchhhHHHhHHHHHH-HcCCCh--hHHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhcCCCC
Q 009536 340 AGINGVLYFSSLTFQ-DVGITD--GALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLD 415 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
..++....+++.|++ +.+.++ +.+....+.....+..+++|+++|| +|||+++..+.++..++.+.+.+..
T Consensus 28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~----- 102 (489)
T PRK10207 28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL----- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 344444445555544 456553 3455555566666677799999999 9999999999999999888877621
Q ss_pred ccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHh
Q 009536 416 EDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG 492 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~ 492 (532)
.....+.......+.+.+ ..|...+++.|.+|++ +|+.++++.+...++|..++|.+.|++.++.||++.|++
T Consensus 103 ----~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 103 ----LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred ----cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 111112122223334433 3466678899999877 457899999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 009536 493 FGGVSLLSA 501 (532)
Q Consensus 493 ~~~~~~~~~ 501 (532)
.++..+++.
T Consensus 179 ~~i~~~~~~ 187 (489)
T PRK10207 179 CGAGLIIAL 187 (489)
T ss_pred HHHHHHHHH
Confidence 655444333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=96.52 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI 165 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 165 (532)
|..+..........+ ....++..-|++++.+|+ |..|...+...-.+|..+ +++.|.+.|++|++.++.+|.+...
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~--sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGY--SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCC--CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence 444444444443333 445566677899999999 999999999999999886 5889999999999999999999999
Q ss_pred HHHHHHHhh-------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 166 LGAIISAQA-------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 166 ~~~~~~~~a-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
+|..+..++ .++|.+.+..++.|.+.+....++.....+.||. +||++.|+.-...+++..+-..+...+..
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 998887653 4678888888999998877777777777788985 69999999999999987776666555544
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhcccccC
Q 009536 239 DPHWWRTMLYIASLPGFILALGMQFTVES 267 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 267 (532)
... -+..+.......++.++...+++..
T Consensus 157 ~~~-~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 157 DDP-SSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred CCh-HHHHHHHHHHHHHHHHHHhhheecc
Confidence 433 4555555555555555555555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-11 Score=96.15 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccc
Q 009536 367 LVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLV 445 (532)
Q Consensus 367 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 445 (532)
...++.+++.++.+++.||++||+.+..+.....++.+.+... .+... .....+..+.+.+ ..+....+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---------SNITV-LIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---------ccHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 3467788899999999999999999988887777776665542 11222 2222222233222 34566778
Q ss_pred cccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeecc
Q 009536 446 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 446 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (532)
..|.+|+++|+++.++.+....++..+++.+.+.+.+..+++..+.+.+.+.++..+..++..||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 88999999999999999999999999999999999998888888888887777776666555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=108.48 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=102.6
Q ss_pred hcchhhHHHhHHHHH-HHcCCChh--HHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhcCCC
Q 009536 339 FAGINGVLYFSSLTF-QDVGITDG--ALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPL 414 (532)
Q Consensus 339 ~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (532)
...++....+++.++ ++.+.+.. ...............+++|++.|| +|||+.+..+..+..++..++.+..
T Consensus 34 ~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~---- 109 (500)
T PRK09584 34 RFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG---- 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc----
Confidence 334445555666665 45666543 344434444444445689999999 5999999999988888877666521
Q ss_pred CccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhH
Q 009536 415 DEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRT--RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYA 491 (532)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~ 491 (532)
.....+.......+.+.+ ..+....+..|.+|++. ++.+.++.+...++|..++|.+.|++.+..||+..|.
T Consensus 110 -----~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~ 184 (500)
T PRK09584 110 -----HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA 184 (500)
T ss_pred -----ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 111222222222333333 34556678889887643 4567888899999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 009536 492 GFGGVSLLSA 501 (532)
Q Consensus 492 ~~~~~~~~~~ 501 (532)
+.++..+++.
T Consensus 185 i~~i~~~i~~ 194 (500)
T PRK09584 185 LSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHH
Confidence 8775544443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-10 Score=103.97 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHh---hCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKE---LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
++.+.+..++.|.............+.+.+| +|. ++.+.++..+.+..+..++.++.+++.||+|+|+++.++..
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~--s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~ 216 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL--PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAF 216 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3344445555555554444444445554443 577 88999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcch
Q 009536 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (532)
Q Consensus 163 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 242 (532)
+.+++.++....++...+ .+-++.|++.+..+|...+...+..+++ .+.+.++. ....+|..++|.+.|.+.+..+
T Consensus 217 l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g- 292 (310)
T TIGR01272 217 LAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG- 292 (310)
T ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-
Confidence 888887766665554333 4556889999999999999998988765 55666765 5566899999999999988777
Q ss_pred hHHHHHhhHHH
Q 009536 243 WRTMLYIASLP 253 (532)
Q Consensus 243 wr~~f~~~~~~ 253 (532)
.+..|++..+.
T Consensus 293 ~~~a~~v~~~~ 303 (310)
T TIGR01272 293 IQLAFALPVPC 303 (310)
T ss_pred chHHHHHHHHH
Confidence 88888754443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=103.07 Aligned_cols=180 Identities=12% Similarity=-0.016 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhhhcchhhHHHhHHHHHH-HcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHH
Q 009536 327 AFIGGALFLLQQFAGINGVLYFSSLTFQ-DVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISM 403 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 403 (532)
.+....+.+...+.....+....+.+-+ +.+.+ +.++...+..+...++++..|++.||+|.|+++.++.++..+..
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3444344444444444444444444433 56666 45677777788888999999999999999999998888888777
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH--
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV-- 481 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~-- 481 (532)
+.+.+..... .++. ..+.++-+..+.+.+..+.....+++.+|+++||++.|+.....++|..+++.+.+.+.
T Consensus 115 ~~~~~a~~~~----~~s~-~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 115 VWLGIAVQNP----NTPF-GIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHccc----CCCH-HHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7666521100 0122 22222323333333345556677889999999999999997777777776665554433
Q ss_pred ---Hhh-------------CcchhhHhHHHHHHHHHHhhheeeccC
Q 009536 482 ---ETF-------------GVAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 482 ---~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
+.. +++.+.++...+.++..++.+++.++.
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 322 245555566666666666665555543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-10 Score=109.24 Aligned_cols=138 Identities=18% Similarity=0.078 Sum_probs=100.2
Q ss_pred ccccccchhHHHHH-hhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH-H---Hhhhc
Q 009536 102 HIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII-S---AQAHS 176 (532)
Q Consensus 102 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~-~---~~a~~ 176 (532)
.........|.+.+ .+|. +..+.++....+.++..++.+++|+++||+|||++++.+.++..+.... . ...++
T Consensus 253 ~~~~~~~~~p~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHL--SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33344455666554 4788 7778888888999999999999999999999999988775554332221 1 12244
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCcc
Q 009536 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 177 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
+..+.+..++.|++.+...+....++.|.+|+++|+...++.. .+..++..++|.+.+++.+..+
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 5445555666677777777777788999999999999999864 4445557778999888887766
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=114.36 Aligned_cols=118 Identities=23% Similarity=0.200 Sum_probs=100.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh-hcHHHHHHHHHHHhhhhhhhhhhhhH
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-HSLDEMLWGRFLVGLGIGVNTVLVPI 200 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~~~~~ 200 (532)
+..+.+++.+.+.++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999999888888777665 46677788889999999999999999
Q ss_pred hhhhcCC-------cccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 201 YISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 201 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45579999999999999999999988877654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=116.38 Aligned_cols=137 Identities=18% Similarity=0.071 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcH--HHHHHHHHHHhhhhhhhhhhhhHhhhhcC
Q 009536 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (532)
Q Consensus 129 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 206 (532)
...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445566677888999999999999999999999999988888776543 45556667777777888888899999999
Q ss_pred CcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccCh
Q 009536 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 207 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
|++.|+.++|+.+....+|.+++|.+.+ +. ..+ +...+++.+...++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKW-LFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHH-HhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999988 43 333 67788888888877777777888763
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=103.56 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=145.6
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
.+++.-..+.++.+.. +......-..++|+ +..+..++...-.+..+++++++|+|.||+|.|+++.+++++..+.+
T Consensus 256 ~FLiA~~~~~DGv~ti-l~~~~~fg~~~~gl--s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 256 LFLIARFFYIDGVNTI-LAMGGVFGAADLGL--SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 4444444444444332 22222334459999 99999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009536 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (532)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~ 248 (532)
+..-+...-..+.++-.+.|++.|..+....++..+.+|+++-++.+|+++...-.+..+||.+.+.+.+..+.-|.-+.
T Consensus 333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 88888777777888889999999999999999999999999999999999999999999999999999887776888887
Q ss_pred hhHHHHHHHHHHhcccccC
Q 009536 249 IASLPGFILALGMQFTVES 267 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (532)
...++.++.++..+..|++
T Consensus 413 ~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhhHhhEEeecCC
Confidence 7777777777777776654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=109.18 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=108.8
Q ss_pred cccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHHHhhhcHHHHHHH
Q 009536 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183 (532)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~ 183 (532)
.....+|.+.++.|. +..+.+++.+.+.++..+++++.|++.||+ +||+.+..+.++.+++.+++.+.++..... .
T Consensus 215 ~~~~~lp~~~~~~g~--~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 291 (355)
T TIGR00896 215 SLIGWLPAILISHGA--SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W 291 (355)
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 344556777778887 888899999999999999999999999999 567777788888888877777665433322 4
Q ss_pred HHHHhhhhhhhhhhhhHhhhhcCC-cccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009536 184 RFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (532)
Q Consensus 184 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr 244 (532)
-++.|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.|.+.++.++|.
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 577899999998888777766554 5667888999888888999999999999988766454
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=100.12 Aligned_cols=166 Identities=17% Similarity=0.064 Sum_probs=125.6
Q ss_pred hhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCC
Q 009536 337 QQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL 414 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (532)
..+.....+....+.+-++.+.+ +.++...+..+.+.+.++..|.+.||+|.|++...+.++..+-++.+.+....+
T Consensus 25 v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~- 103 (417)
T COG2223 25 VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP- 103 (417)
T ss_pred HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC-
Confidence 33333344444444444666766 457777788899999999999999999999999999998888888877754422
Q ss_pred CccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC---cchhhH
Q 009536 415 DEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG---VAPVYA 491 (532)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g---~~~~~~ 491 (532)
+ . +.+..+-+..+.+.+...+...++++.+|++++|.++|+.. .+|+|..+...+.+.+....| |+.+..
T Consensus 104 ----~-~-~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 104 ----S-T-WQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred ----c-h-HHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 1 23333444445555556667788999999999999999998 999999999999999999999 888888
Q ss_pred hHHHHHHHHHHhhheeecc
Q 009536 492 GFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (532)
+.....++..++.++..++
T Consensus 177 i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 177 IYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 8888888877777766543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-10 Score=102.86 Aligned_cols=147 Identities=11% Similarity=0.125 Sum_probs=106.8
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc----cchhHHHHH-hhHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTFQI-DTIP 163 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~l~~-~~~~ 163 (532)
++.++...+..-++...-...++++.+++|+ +....+.+--.-.+...+.+++.|..+|| |||||.++. +.++
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGv--phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSLGV--PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHcCC--CcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 4444444444455555555566778888898 66666777777777888899999999995 788766555 5556
Q ss_pred HHHHHHHHHhhhcHHH-----------------HHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccc-hhhHhHHHHHHH
Q 009536 164 LILGAIISAQAHSLDE-----------------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLG 225 (532)
Q Consensus 164 ~~~~~~~~~~a~~~~~-----------------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g 225 (532)
.+++.++.+++.++.. ++++-.+.=++.-.....+-+++.|...++++.+ +++.+....++|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 6777777777654433 3334444445555777888899999998777777 999999999999
Q ss_pred HHHHHHhcCCCC
Q 009536 226 IITSLFLGIPAE 237 (532)
Q Consensus 226 ~~~g~~~~~~l~ 237 (532)
.++|..++.++.
T Consensus 192 nvLGY~~g~y~~ 203 (498)
T KOG0637|consen 192 NVLGYALGSYLG 203 (498)
T ss_pred ceeeeecccccC
Confidence 999999987554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-10 Score=104.90 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=111.0
Q ss_pred chhhHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
+...+.+++-.++++.+.... |......-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+....
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-------- 457 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-------- 457 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--------
Confidence 344445555556677654432 5555555677788888999999999999999999998888888777732
Q ss_pred hhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHH-HHHHHHHHHHHHHHHHhhCcchhhHhHHHHH
Q 009536 419 SHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVH-WVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
+.|..+..=++-....+. .+....+|+.+..||+.+.++.++..... .+|-.+|+.++|.+.+.+|-+..|..+++.+
T Consensus 458 n~W~vLPieilqgit~al-iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHAL-IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred CchheeeHHHHHHHHHHH-HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 222222222222222222 34445688899999999999999987765 5888999999999999999899998888777
Q ss_pred HHHHHhhh
Q 009536 498 LLSALFAY 505 (532)
Q Consensus 498 ~~~~~~~~ 505 (532)
++.+++..
T Consensus 537 l~~l~~~~ 544 (618)
T KOG3762|consen 537 LVTLALFI 544 (618)
T ss_pred HHHHHHHH
Confidence 77665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-10 Score=111.56 Aligned_cols=142 Identities=16% Similarity=0.063 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-cc
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GA 438 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 438 (532)
+.+.....+.++..++.++.|++.||+|+|+.+..+.++..++.++..+... ..... ..+.-+..+.+. ..
T Consensus 77 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------~~~~~-l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 77 LQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-------GGIAL-VVFCRVIQGLAQGSV 148 (465)
T ss_pred HhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-------cCchH-HHHHHHHHHHhcccc
Confidence 3467777888999999999999999999999999888877777666543210 11122 222223333333 33
Q ss_pred ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhHhHHHHHHHHHHhhheeec
Q 009536 439 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF-GVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ||+..|++.+++.++..++.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 5677788999999999999999999999999999999999999984 9999999888877666655544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=105.35 Aligned_cols=148 Identities=15% Similarity=0.071 Sum_probs=104.8
Q ss_pred HHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 009536 349 SSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILG 426 (532)
Q Consensus 349 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
.+...++.+.+ ..++....+.+...+..++.|++.||+|||+++..+..+.+++.+++... ... +.
T Consensus 26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---------~~~--~~- 93 (393)
T PRK11195 26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---------IHP--LL- 93 (393)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---------HHH--HH-
Confidence 33445566554 34677778889999999999999999999999999998887776665441 111 11
Q ss_pred HHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhe
Q 009536 427 TLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 506 (532)
..++.+.......|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+.. +...+.+.+.+.+++.+ ..+
T Consensus 94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~-~~~ 171 (393)
T PRK11195 94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAAL-FNL 171 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHh
Confidence 1222222233345788889999999999999999999999999999999999998864 55555555444433333 334
Q ss_pred eecc
Q 009536 507 FIVE 510 (532)
Q Consensus 507 ~~~~ 510 (532)
..|+
T Consensus 172 ~l~~ 175 (393)
T PRK11195 172 FIPR 175 (393)
T ss_pred cCCC
Confidence 4554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=106.61 Aligned_cols=157 Identities=11% Similarity=-0.007 Sum_probs=100.8
Q ss_pred cchhHHH-HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHH--h--hhcHHHHH
Q 009536 107 NGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--AHSLDEML 181 (532)
Q Consensus 107 ~~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--a~~~~~l~ 181 (532)
...+|.+ .+++|. +..+.++..++..+...+++++.|+++||+|||+++.++.++.++...... . .++....+
T Consensus 263 ~~~lp~~l~~~~g~--s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (432)
T PRK10406 263 TTYMQKYLVNTAGM--HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF 340 (432)
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3445554 456787 777888888888888889999999999999999988877665443332221 1 22333222
Q ss_pred HHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH-HHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009536 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (532)
Q Consensus 182 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 260 (532)
..-++.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ..++|...++..++..++..+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHH
Confidence 2223333333444455667889999999999999998765443 3444777766553 3343666666666666665555
Q ss_pred hccccc
Q 009536 261 MQFTVE 266 (532)
Q Consensus 261 ~~~~~~ 266 (532)
.+++.+
T Consensus 420 ~~~l~~ 425 (432)
T PRK10406 420 SLMLHR 425 (432)
T ss_pred HHHhhh
Confidence 554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-08 Score=92.44 Aligned_cols=313 Identities=12% Similarity=0.026 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcc
Q 009536 130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK 209 (532)
Q Consensus 130 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 209 (532)
.++-+..+.+++++.+.+.|+.|+|+.++++..+.....+.+-+-+ -+-++.+-.+.|+|.+..+...-.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 6677778889999999999999999999999999998888777655 456788899999999999999999999999999
Q ss_pred cccchhhHhHHHHHHHHHHHHHhcCCCCCCcc-------hh-HH-------------HHHhhHHHHHHHHHHhcccccCh
Q 009536 210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WW-RT-------------MLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 210 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-------~w-r~-------------~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
.+.+..++.......+.++|..+-..+..... +- ++ .+.+...+..+.++...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999888888888888666544332111 01 11 11111111122222223333211
Q ss_pred hHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhh---hhhcCCcchHHHHHHHHHHHhhhcchhhH
Q 009536 269 RWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS---ELLEEPHSRVAFIGGALFLLQQFAGINGV 345 (532)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
....+ +..+.......+ +++++++............ +....+.
T Consensus 215 -~~~~~------------------------------~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG---~~~Sf~~ 260 (461)
T KOG3098|consen 215 -VVNCK------------------------------SSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTG---LETSFWI 260 (461)
T ss_pred -hhhhh------------------------------hhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHH---HHHHHHH
Confidence 00000 000011111222 2333333222221111111 1111111
Q ss_pred HHhHHHHHH--HcCCC---hhHHHHHHHHHHHHHHhhhhHhhhhh---cCCchhhhhhHHHHHHHHHHHHHHhcCCC--C
Q 009536 346 LYFSSLTFQ--DVGIT---DGALASLLVGVTNFAGALCASYLMDK---EGRQKLLIGSYLGMAISMLLVVGATSLPL--D 415 (532)
Q Consensus 346 ~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 415 (532)
..|...+.- ..+.. -.+......+++.+++....+.+.+| +|+++.+.++..+..+.+++......... .
T Consensus 261 ~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~ 340 (461)
T KOG3098|consen 261 SIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLR 340 (461)
T ss_pred hccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCC
Confidence 112211111 12222 22455556677888888888888766 67888887777776666665544321111 0
Q ss_pred cc------chhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 009536 416 ED------FSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 478 (532)
Q Consensus 416 ~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 478 (532)
++ ..+...+..++.+..+++-+ .....+.++.+.+ ++.|..+.++.-.-..++..++-....
T Consensus 341 ~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 341 PTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred CCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 10 01112222233333333322 3456677788888 456888888888877777776655554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-07 Score=88.66 Aligned_cols=376 Identities=11% Similarity=-0.007 Sum_probs=203.1
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
...++.+.++...+..+.....+.+..+..-+ +-.-.+...-.-.+..++.++..|.+.||..|.+++..+.+..-++.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 55677888888888888888888877777431 22223334444455667888899999999999999888776654433
Q ss_pred HHHHhh--------h----cHHHH---HHHHHHHhhhhhhhh-hhhhHhhhhcC------CcccccchhhHhHHHHHHHH
Q 009536 169 IISAQA--------H----SLDEM---LWGRFLVGLGIGVNT-VLVPIYISEVA------PTKYRGSLGTLCQVGTCLGI 226 (532)
Q Consensus 169 ~~~~~a--------~----~~~~l---~~~r~l~G~~~g~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~ 226 (532)
.+++.. . +-+.. ++.-.+.|.-.-... ....++=.||. +++.+.+.++...-.--+--
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 333211 1 11222 222222222111111 11112223443 24445677777777788889
Q ss_pred HHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc-----ccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHH
Q 009536 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT-----VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ 301 (532)
Q Consensus 227 ~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (532)
+++|++.|.+....+ .+...++.+...++..+.=+++ ...|. +..+++.++........ ............
T Consensus 163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 238 (432)
T PF06963_consen 163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE--SSSESSSDPSIL 238 (432)
T ss_pred HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc--ccccccchhhHH
Confidence 999999999988777 7777776666666554332221 12222 22111111111000000 000000000011
Q ss_pred HHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHHhhhh
Q 009536 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGALCA 379 (532)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 379 (532)
...++.-......|+..++.+.+...+...++++. ...+...+..|+...|.+.. +..-....+.++.+.++.
T Consensus 239 ~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-----VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~ 313 (432)
T PF06963_consen 239 KRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-----VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVY 313 (432)
T ss_pred HHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-----HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111223456677777655544443333332 11223344555666677654 556666778899999999
Q ss_pred HhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc---cccccccccccCccccc
Q 009536 380 SYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG---PVTGLVIPELSSNRTRG 456 (532)
Q Consensus 380 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 456 (532)
.++.+|+|..+.-.++.....++..+.......+..+ . .......++......=.|.+ -...-+++|..|+++||
T Consensus 314 p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~-~-~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg 391 (432)
T PF06963_consen 314 PWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP-F-SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERG 391 (432)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC-c-hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhh
Confidence 9999999988877777665555444433322222111 0 11111111111111112222 33456778999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009536 457 KIMGFSFSVHWVCNFLVGLF 476 (532)
Q Consensus 457 ~~~g~~~~~~~~g~~i~~~~ 476 (532)
+..|+-+...++...+.-.+
T Consensus 392 ~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 392 AVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877665433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=107.84 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=106.2
Q ss_pred HhHHHHHHHcCCC-hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 009536 347 YFSSLTFQDVGIT-DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL 425 (532)
Q Consensus 347 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
..++.+..+.|.+ ...+......++..++.++.|+++|.+|||..++.+.++..++.++.... +.....
T Consensus 65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA----------~~~~~~ 134 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA----------QNMNTF 134 (599)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC----------CcHHHH
Confidence 3445666777665 44677777888899999999999999999999999999999998888762 222222
Q ss_pred HHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhh
Q 009536 426 GTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 505 (532)
.......+.+.+........++|..|.+.|..+.++.....-....+++.+...+..+.+|++.|++.++...++.+..+
T Consensus 135 iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 22222333334444445566899999999988877666554444456677776666667899999988887766665544
Q ss_pred ee
Q 009536 506 YF 507 (532)
Q Consensus 506 ~~ 507 (532)
++
T Consensus 215 ~f 216 (599)
T PF06609_consen 215 FF 216 (599)
T ss_pred HH
Confidence 33
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-10 Score=102.01 Aligned_cols=144 Identities=15% Similarity=0.073 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-cc
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GA 438 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 438 (532)
+.++.+...++.+++.+++.|.+.||+|+|..+++|+.++..+.+++.+. +... .+.+.=..-+.+. ..
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg---------~sy~-~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG---------NSYP-MLFVARSLQGVGSAFA 176 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc---------chhH-HHHHHHHHhhhhHHHH
Confidence 56888889999999999999999999999999999999999999998882 2222 2222222223222 23
Q ss_pred ccccccccccccCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 439 GPVTGLVIPELSSNRT-RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
.....+++++.+|.+. |++++|+.-.+..+|-.+||++.|.+++..|+..+|.++++++++...+.++.++.++.
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 4556678889998765 69999999999999999999999999999999999999999999988887776655443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=102.63 Aligned_cols=173 Identities=16% Similarity=0.233 Sum_probs=134.0
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhC-CCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELG-FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
+....+..++.+.....+....+.+.+|.| . +....+.+.++..++=.+.-...+++..|+|.|+++.++.+.+++=
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~--~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGY--SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVR 286 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334444455666666666677777778877 5 5566677777777777888889999999999999999999999999
Q ss_pred HHHHHhh-hcHHHHHH----HHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHH-HHHHHHHHHHHhcCCCCCCcc
Q 009536 168 AIISAQA-HSLDEMLW----GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV-GTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 168 ~~~~~~a-~~~~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~~ 241 (532)
..+.+.. ++.+...+ ...++|+..+..+.+...++.+..|++.|+++.+++.. ..++|..+|..++|++.+..+
T Consensus 287 ~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 287 WLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 8888887 55444333 34579999999999999999999999999999999875 578999999999999988755
Q ss_pred h-----hHHHHHhhHHHHHHHHHHhcc
Q 009536 242 W-----WRTMLYIASLPGFILALGMQF 263 (532)
Q Consensus 242 ~-----wr~~f~~~~~~~~~~~~~~~~ 263 (532)
. |...+.+.+.+.++..+++++
T Consensus 367 ~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 367 ARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1 555666666665555444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-10 Score=99.96 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccc
Q 009536 361 GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 440 (532)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (532)
+|+....+.++.++.++..|.++||+|||.++.++.+..++...+.+. +.....++..=+.++..-+...
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----------S~~F~afv~aR~l~Gi~kgnl~ 139 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----------SRNFAAFVLARFLGGIFKGNLS 139 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhccCchH
Confidence 477788889999999999999999999999999999988887777666 3333333333455666666767
Q ss_pred ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
+..++++|+++++.|+.+++.+++..++|.++||.+.|++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 788999999999999999999999999999999999999987
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=100.21 Aligned_cols=180 Identities=16% Similarity=0.040 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
|+...+.+.+.......+.+.+......+-++-|+ +..+..+..........+..+++..+.||+|||+.++++..++
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~--~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF--TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 33333333333344444445555566788888898 8888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh---cHH------HHHHHHHHHhhhhh-hhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcC
Q 009536 165 ILGAIISAQAH---SLD------EMLWGRFLVGLGIG-VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (532)
Q Consensus 165 ~~~~~~~~~a~---~~~------~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 234 (532)
.+..+++...- +.. ..+++.++..++.+ +..|...-+.+|.+|++.|..++++.....-+...+-...-.
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877541 111 12233333333222 246778889999999999999999998888888777766666
Q ss_pred CCCCCcchhHHHHHhhHHHHHHHH-HHhcccccCh
Q 009536 235 PAEDDPHWWRTMLYIASLPGFILA-LGMQFTVESP 268 (532)
Q Consensus 235 ~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~~~p 268 (532)
.+.+..|. +.|....+++++.. ..+..+||+.
T Consensus 426 ~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 426 PLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 66666653 67777777776654 4556688874
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=120.43 Aligned_cols=150 Identities=16% Similarity=0.076 Sum_probs=119.9
Q ss_pred cccchhHHHH-HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh---------
Q 009536 105 VMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--------- 174 (532)
Q Consensus 105 ~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------- 174 (532)
.+...+|.+. +.+|. +..+.|++.+++.++.+++.++.|+++|++++++.+..+.++.+++.+..++.
T Consensus 243 ~~~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (1140)
T PRK06814 243 VVLSQLPLLAKETLGG--DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA 320 (1140)
T ss_pred HHHHHhHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence 3333455554 45787 88899999999999999999999999999888877777776666666555443
Q ss_pred -----------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchh
Q 009536 175 -----------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW 243 (532)
Q Consensus 175 -----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~w 243 (532)
++.+.++++.++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+++++++.+.....++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~ 400 (1140)
T PRK06814 321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSI 400 (1140)
T ss_pred cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 677888889999999999999999999999999999999999999999999999999988886433226
Q ss_pred HHHHHhhHHHHHH
Q 009536 244 RTMLYIASLPGFI 256 (532)
Q Consensus 244 r~~f~~~~~~~~~ 256 (532)
...|++.++..++
T Consensus 401 ~~~~~~~~~~~~~ 413 (1140)
T PRK06814 401 PWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655544333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=119.62 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=120.7
Q ss_pred HHHHHhhCCCCChh-HHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q 009536 111 VSIAKELGFEGNPI-LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL 189 (532)
Q Consensus 111 ~~~~~~~~~~~~~~-~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~ 189 (532)
+.+.+++|. +.. +.+++.+.+.++..++.+++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|+
T Consensus 257 ~~~~~~~g~--s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 334 (1146)
T PRK08633 257 AYAKEVLGL--DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF 334 (1146)
T ss_pred HHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345667888 777 88999999999999999999999999999999999999998888888888899889999999999
Q ss_pred hhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC-cchhHHHHHhhHHHHH
Q 009536 190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWWRTMLYIASLPGF 255 (532)
Q Consensus 190 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~wr~~f~~~~~~~~ 255 (532)
+.+...+...+++.+.+|+++||+++++.+....+|.++++.+++.+... .+ +...|++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 400 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS-PAGLFYLIALVTL 400 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888887765432 23 5566665554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-09 Score=100.78 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=112.3
Q ss_pred hhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch
Q 009536 342 INGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
........|.+.++.+.+ +.++......++..++.+..|++.||+|||+.+..+..+.+++.+++..... .
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------~ 91 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------I 91 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------h
Confidence 344445667777777766 5578888889999999999999999999999999999998888777544211 1
Q ss_pred hhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 009536 420 HNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET--------------- 483 (532)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~--------------- 483 (532)
..........+..+.+.+. .+..+.++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~ 171 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSP 171 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCH
Confidence 1222223333333443333 344556777888989999999999999999999999999877532
Q ss_pred -----------hCcchhhHhHHHHHHHHHHhh
Q 009536 484 -----------FGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 484 -----------~g~~~~~~~~~~~~~~~~~~~ 504 (532)
.+|+.+|.+.+++.++..++.
T Consensus 172 ~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 172 EELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888887777666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=102.27 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=108.7
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHH-HHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH---Hhh-hcHHHHHHHH-
Q 009536 111 VSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR- 184 (532)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r- 184 (532)
+.+.+++|. ++.+.+++.+... ++..++.++.|++.||+|+|+.+..+.++.++..+.. ++. ++.+.++++-
T Consensus 234 ~~l~~~~G~--~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 311 (402)
T PRK11902 234 TFLIRGAGF--SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG 311 (402)
T ss_pred HHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 456777888 8888999886654 5688999999999999999998887777766554433 343 4556555554
Q ss_pred ---HHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009536 185 ---FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 185 ---~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
+..|++.+...+....++.+.+|.+++ ++.+...++|..+++.++|.+.+..| |+..|.+.++++++.+++.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777776544 55555667777767778899999888 9999999888887776665
Q ss_pred cccc
Q 009536 262 QFTV 265 (532)
Q Consensus 262 ~~~~ 265 (532)
+..+
T Consensus 387 ~~~~ 390 (402)
T PRK11902 387 WLMR 390 (402)
T ss_pred HHHh
Confidence 4433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=97.92 Aligned_cols=160 Identities=15% Similarity=0.032 Sum_probs=105.8
Q ss_pred hHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHHhhhhHhhhhhc-----CCchhh-hhhHHHHHHHHHHHHHHhcCCCC
Q 009536 344 GVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGALCASYLMDKE-----GRQKLL-IGSYLGMAISMLLVVGATSLPLD 415 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
......|.+.++.|.+.. ++.... .+...+ .++.|++.||+ |||+.+ +.+.++.++....+.+...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 344456777888887744 333322 333333 88999999997 788864 5555555555445443211
Q ss_pred ccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC--------cc
Q 009536 416 EDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--------VA 487 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--------~~ 487 (532)
......+....+..........+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..| |+
T Consensus 80 --~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 80 --STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 11222222222222222233346667888999999999999999999999999999999999998888 99
Q ss_pred hhhHhHHHHHHHHHHhhheeeccC
Q 009536 488 PVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
..|++.+++.++..+..++..+|.
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Confidence 999888877777665554445554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-08 Score=96.46 Aligned_cols=184 Identities=15% Similarity=0.080 Sum_probs=114.6
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHhhhhHhhhh----hcCCchhhhhh-HHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVTNFAGALCASYLMD----KEGRQKLLIGS-YLGMA 400 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~ 400 (532)
+.........++ .+.....+.+.+++..+.+. .+.......+.+++..++.|+++| |+|||+.++.. ....+
T Consensus 7 i~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 7 LRVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 333333333333 34455556666778887763 366667778889999999999999 59999988765 44444
Q ss_pred HHHHHHHHHhcCCC--C---ccchhhH--HHHHHHHHHHHHhcc-cccccccccccccCcccc--chhHHHHHHHHHHHH
Q 009536 401 ISMLLVVGATSLPL--D---EDFSHNL--SILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTR--GKIMGFSFSVHWVCN 470 (532)
Q Consensus 401 ~~~~~~~~~~~~~~--~---~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~ 470 (532)
+++.++.+...... . +...... ......+...-+... ..+...+++.|.+|+++| +.+.++.+...++|+
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 55555544221100 0 0001111 111111111111221 233456889999998865 579999999999999
Q ss_pred HHHHHHHHHH--HHhh-------------CcchhhHhHHHHHHHHHHhhheeeccCC
Q 009536 471 FLVGLFFLDL--VETF-------------GVAPVYAGFGGVSLLSALFAYYFIVETK 512 (532)
Q Consensus 471 ~i~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (532)
.+++.+.+.. .+.+ +++..|++.+++.+++.++..+..+|..
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9999988864 2222 3566788888888888888878877754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=87.56 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=124.7
Q ss_pred CchHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhH
Q 009536 83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
.....++.++|++..+..+.....++. .+++.||+ ++...+-+.+....-.++.+++.|.++|++|++...+.+..
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~--fF~~rfGl--S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~ 338 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPM--FFQKRFGL--SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASAC 338 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCC--ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHH
Confidence 344445666776666655555444443 67899999 88888888888777888999999999999999988877655
Q ss_pred HHHH-HHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 163 PLIL-GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 163 ~~~~-~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
+..+ +-....+ +++.=++...+.|+............++...|+++.|.+.+..+...++|..+.|++++.+.+..+
T Consensus 339 ~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 339 ILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 5433 3333333 333345677888998887777778888999999999999999999999999999999999998766
Q ss_pred h--hHHHHHh-hHHHHHHHH
Q 009536 242 W--WRTMLYI-ASLPGFILA 258 (532)
Q Consensus 242 ~--wr~~f~~-~~~~~~~~~ 258 (532)
+ |--.|.+ .+.+++...
T Consensus 417 ~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 417 SYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 4 4434443 344444333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=96.19 Aligned_cols=161 Identities=28% Similarity=0.461 Sum_probs=130.2
Q ss_pred HHhhhhhhccccccchhHHHHHhhCCCCCh--hHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHH
Q 009536 94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 171 (532)
...+.............+.+..+++. +. ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 9 LAALLLGLDLGLLSPALPLLLSTLSL--SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 33444446667777788888888875 44 478999999999999999999999999999999988888767777777
Q ss_pred Hhhhc--HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCc-ccccchhhHhHH-HHHHHHHHHHHhcCCCCCC--cchhHH
Q 009536 172 AQAHS--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQV-GTCLGIITSLFLGIPAEDD--PHWWRT 245 (532)
Q Consensus 172 ~~a~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~~~wr~ 245 (532)
++..+ .+.+++.|+++|++.+...+...+++.|++++ ++|+...+.... ...+|.++++.+++.+... .+ ||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 165 (338)
T COG0477 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRA 165 (338)
T ss_pred HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHH
Confidence 77776 89999999999999999999999999999998 678988888888 5888888888777666544 33 999
Q ss_pred HHHhhHHHHHHH
Q 009536 246 MLYIASLPGFIL 257 (532)
Q Consensus 246 ~f~~~~~~~~~~ 257 (532)
.|.+........
T Consensus 166 ~~~~~~~~~~~~ 177 (338)
T COG0477 166 AFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHH
Confidence 776666555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-09 Score=102.32 Aligned_cols=147 Identities=19% Similarity=0.106 Sum_probs=121.1
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
...+.+..++..+.........+.+.++.-- ++...+++..++.++..++.+++++++||+|+|+++..+.++.+++.
T Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~--~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLG--NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 4455555566666666666666766666422 34667888889999999999999999999999999999999999999
Q ss_pred HHHHhhh--cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCc-------ccccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 169 IISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 169 ~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
++..+.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|...+..+...-+|..+++.+.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9998886 999999999999999999999999999999873 33478888888888888888888776554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=104.97 Aligned_cols=172 Identities=14% Similarity=0.025 Sum_probs=117.2
Q ss_pred HHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhc
Q 009536 334 FLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS 411 (532)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
..+............++.+-++++.+ +.+++...+.++.+++.++.+++.||.+||+.+.++.++.+++.+++.+...
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 33333333344444555665566554 5577888889999999999999999999999999999999999888765321
Q ss_pred CC----CC-------------------c----------------cc--hhhHHHHHHHHHHHHHhccc-ccccccccccc
Q 009536 412 LP----LD-------------------E----------------DF--SHNLSILGTLFYIFTFAIGA-GPVTGLVIPEL 449 (532)
Q Consensus 412 ~~----~~-------------------~----------------~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 449 (532)
.. .. . .. .....++.+.-+..+.+.+. .+...+++.|.
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~ 200 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF 200 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence 00 00 0 00 00122222333333333333 47777899999
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------C-cchhhHhHHHHHHHHHHhhh
Q 009536 450 SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF---------------------G-VAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~ 505 (532)
+|+++|+...|+.+....+|..+|+.+.+.+.+.+ | |+..|++.+++.++.++..+
T Consensus 201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887643 1 45567777766666555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-08 Score=93.04 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=111.4
Q ss_pred hhHHHhHHHHHHHcCCC--h-hHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch
Q 009536 343 NGVLYFSSLTFQDVGIT--D-GALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS 419 (532)
Q Consensus 343 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
....+..|.+.++.|.+ + .+.....+..+..+..+.+|++.||+|.|+++.++.+..++..+++.+. .
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------~ 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------T 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------H
Confidence 34555566666677776 4 4677888889999999999999999999999999999888888888772 1
Q ss_pred hhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhH---hHHHH
Q 009536 420 HNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYA---GFGGV 496 (532)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~---~~~~~ 496 (532)
....+.+.=+..|.+-+.......++...+|+++|+++.|+.+....+|.++++++.+. ...+||+.... +..+.
T Consensus 114 -Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 114 -SVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVF 191 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Confidence 22222223233333333322677888899999999999999999999999999999998 55678665433 33333
Q ss_pred HHHHHHhhheeecc
Q 009536 497 SLLSALFAYYFIVE 510 (532)
Q Consensus 497 ~~~~~~~~~~~~~~ 510 (532)
..++.++. +++|.
T Consensus 192 ~~~a~~~a-~~LP~ 204 (511)
T TIGR00806 192 MTFSVFLA-LFLKR 204 (511)
T ss_pred HHHHHHHH-HhCCC
Confidence 44444443 44553
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-09 Score=96.09 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccc
Q 009536 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213 (532)
Q Consensus 134 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 213 (532)
.+.-.-|.++.+++.||+|||+.+..++++++++.++...+.+-..+.+.-|..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34455788999999999999999999999999999988876443222222222233345567788889999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccCh
Q 009536 214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 214 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
..|.-....-+|.++.|+++ ...+.. -..+..+.+..+++..+...++|-++
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999998 222222 23455566777777777777777543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-09 Score=104.27 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=99.7
Q ss_pred chhHHH-HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh--cHHHHHHHH
Q 009536 108 GPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGR 184 (532)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r 184 (532)
...+.+ ++.+|. +....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..
T Consensus 249 ~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 326 (448)
T PRK09848 249 ASSLFYVRYVLND--TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL 326 (448)
T ss_pred hhheeeEeeecCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 334433 334554 554444545555677888999999999999999999999999888887777653 677777788
Q ss_pred HHHhhhhhhhhhhhhHhhhhcCCcc-------cccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 185 FLVGLGIGVNTVLVPIYISEVAPTK-------YRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 185 ~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
++.|+|.+...+...++..|..+.+ ++|...++.+....+|..+|+.+.+.+.
T Consensus 327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988754 3588899999999999999888776553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-07 Score=95.25 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=122.2
Q ss_pred cchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHHHHHHHHHHhhhc--------H
Q 009536 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGAIISAQAHS--------L 177 (532)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~--------~ 177 (532)
......+.+.+|. +......+...+....-+..+++|.++|+ +|+++.++++.++..+|.++.+++.. .
T Consensus 8 aiLvlYl~~~lg~--~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 8 TILVLYFLNFLGF--SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 3344566677888 77777888888888888999999999997 79999999999999999988877521 2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHhhhhcCCccc---ccchhhHhHHHHHHHHHHHHHhcCCCCCC-------cchhHHHH
Q 009536 178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDD-------PHWWRTML 247 (532)
Q Consensus 178 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~~~wr~~f 247 (532)
..++++-.+..+|.|+.-+...+...|-+++++ |...+.++..+.++|..+++++..++.+. .+ |...|
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF 164 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAF 164 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHH
Confidence 335677888889999999999999999997543 56788888899999999998888777532 24 99999
Q ss_pred HhhHHHHHHHHHHhc
Q 009536 248 YIASLPGFILALGMQ 262 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~ 262 (532)
.+.++..++.++...
T Consensus 165 ~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 165 GVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888777665543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-06 Score=84.69 Aligned_cols=148 Identities=11% Similarity=-0.032 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHHhhCCC---CChhHHHHHHHHHHHHHHHH-HHhhhccccccchhHHHHHhh
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE---GNPILEGLVVSIFIAGAFVG-SISSGSLADKLGCRRTFQIDT 161 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~l~~~~~-~~~~G~l~dr~Grr~~l~~~~ 161 (532)
++.++.+.+..|+..++.+ .+-.+.+.+.++ .+...+.|+-+...+...+. .++.+++++|++|++++-+..
T Consensus 6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 3445555555555555554 345566666552 23456788888887777666 899999999999999998888
Q ss_pred HHHHHHHHHHHhh----h---------------------------cHHHHHHHHHHHhhhhhhhhh-hhhHhhhhcCCcc
Q 009536 162 IPLILGAIISAQA----H---------------------------SLDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTK 209 (532)
Q Consensus 162 ~~~~~~~~~~~~a----~---------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~ 209 (532)
..+....+++++. + +.|...+.-+...+....... .-..++.|.++.+
T Consensus 82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~ 161 (472)
T TIGR00769 82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID 161 (472)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 8877777776654 1 123333444555555555555 7788999999999
Q ss_pred cccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 210 YRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 210 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
|-.|..++++.+.++|.++++.+..++.
T Consensus 162 qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 162 EAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-08 Score=95.06 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=98.6
Q ss_pred HHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHh
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 410 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
+.++...........+.|.+-++.+.+ +.++....+.++..++.++.|++.||+|||+++..+..+.+++.+++....
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444556666778877777776 457888888999999999999999999999999999999988887653211
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 411 SLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
. .+....+....+..+.+.+. .+..+.++.+..|++++....++.+....+|..+++.+.+.+.
T Consensus 113 ~-------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 E-------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred h-------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223333333333433333 3455566677766666666899999999999999998877654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-08 Score=95.44 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=109.6
Q ss_pred CCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH
Q 009536 321 EPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG--ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 398 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 398 (532)
+++.|..+........ .....+.+..+.+.+.++.+.++. +..... +.......+..|++.||+|+|+++.++.++
T Consensus 23 e~~Rw~~lva~~~~~~-~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 23 EPRRFALLVLGAFCSI-CTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3444444433333222 223344555677777777787754 333322 122223455789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 009536 399 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477 (532)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 477 (532)
..++.+++++..... .....+.+.+.....+.+.+. .+.....+.+.+| ++||.+.|+......+|+++.+.+.
T Consensus 101 ~~iG~ll~ala~~~~----i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 101 FCLGTLLFALTFQEV----IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred HHHHHHHHHHHhccc----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887732100 001222222233333333322 2334455667787 5699999999999999998755555
Q ss_pred HHHHHhhCcchhhHhHHHHHHHHHHhhheeecc
Q 009536 478 LDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 478 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (532)
..+.. .++...|++.+++.++.+++.+.+.+.
T Consensus 176 ~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 176 LAFFS-DNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 55544 356677777777777766666555543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7e-09 Score=97.98 Aligned_cols=142 Identities=18% Similarity=0.096 Sum_probs=124.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~ 201 (532)
++...|.+.+...+.-.+...+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+........|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccccchhhHh-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhccc
Q 009536 202 ISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 202 i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
+.+.+|+|-.++...+. +...++|..+.+.++|.+.++.| .+.+|++.+.+.++..+...+.
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheee
Confidence 99999998877777774 78899999999999999999998 9999999888877766555553
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=89.08 Aligned_cols=135 Identities=18% Similarity=0.062 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcC
Q 009536 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (532)
Q Consensus 127 ~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 206 (532)
+.+.-+-.+...+..+.+-+..+|+..+.=+.+..++++++.++.++++|.+.=+++-.+.+++.|........+. ..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-Hhc
Confidence 4456666667777778888889998866666777778888999999999999989999999999998888888764 455
Q ss_pred CcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHHHHHHhcccccC
Q 009536 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVES 267 (532)
Q Consensus 207 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~~ 267 (532)
++ ...+-++.|.+.+.++|+..-..+.. .+ .-|..+.+...+.++..+..+++.+.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54 36788888888888888877655554 22 14777777776666555555544333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=99.85 Aligned_cols=142 Identities=14% Similarity=0.029 Sum_probs=102.7
Q ss_pred HHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHh
Q 009536 94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ 173 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 173 (532)
+..++............+.+.+...- +....+++.+...++..++.+++++++||+|+|+.+.++..+.+++.+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~~~y~~~--~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~ 315 (473)
T PRK10429 238 GMALAYNIASNIINGFAIYYFTYVIG--DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLL 315 (473)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444432 4556677777777888999999999999999999999888877766655432
Q ss_pred -----hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCC-------cccccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 174 -----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 174 -----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
.++.+.+++.-++.|++.+...+...++++|..+ +++.|..++......-+|..+++.+.|++.
T Consensus 316 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 316 MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888999999999999999999966 233355888888888888888887776654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-07 Score=81.53 Aligned_cols=360 Identities=13% Similarity=0.058 Sum_probs=182.2
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc-----ccchhHHHHH-h
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-----KLGCRRTFQI-D 160 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~l~~-~ 160 (532)
..+..+.+.+.+.+...+... .+|.+.+.=|. |.+..+...-+| .. ...-++|.++.| |+||||..++ +
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~v--Syt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~ 105 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGV--SYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPC 105 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCc--chhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence 346677777888898888888 89998886676 555444322221 12 234678999999 9999987654 3
Q ss_pred hHHHHHHHHHHHh-----------hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHH
Q 009536 161 TIPLILGAIISAQ-----------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITS 229 (532)
Q Consensus 161 ~~~~~~~~~~~~~-----------a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 229 (532)
..+.+....+.+. .++...+...-++.-+..+....+.-.+.-.+..+++.|.+......+.+.|..++
T Consensus 106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 3333333333332 13333444455666667777777888888888888988988888878888887777
Q ss_pred HHhcCCCCCC------cchhH---------HHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchH
Q 009536 230 LFLGIPAEDD------PHWWR---------TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (532)
Q Consensus 230 ~~~~~~l~~~------~~~wr---------~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (532)
..+--.+... .-+|. ...++.+.+.++...+..+..+++...
T Consensus 186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~----------------------- 242 (510)
T KOG3574|consen 186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES----------------------- 242 (510)
T ss_pred cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-----------------------
Confidence 6554433320 00011 112223333333333333444332210
Q ss_pred HHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 009536 295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA 374 (532)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (532)
..++.....+....-.+++++-+..+.........=+ ++..-....+.-+-+.|....-+.... +..+.
T Consensus 243 -----~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~----gf~a~da~t~LkLle~Gv~ke~Lal~~--v~~~p 311 (510)
T KOG3574|consen 243 -----VDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKL----GFQAADALTSLKLLEHGVPKEELALIA--VPLVP 311 (510)
T ss_pred -----hhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHH----HhhhhhhccchHHHHcCCChhHheeee--eehhh
Confidence 0000000000011233455555554433332222211 222223333444456666643222111 33333
Q ss_pred HhhhhHhhhhhcC--Cchhh------hhhHHHHHHHHHHHHHHhcCCC-CccchhhHHHHHHH--HHHHHHhcccccccc
Q 009536 375 GALCASYLMDKEG--RQKLL------IGSYLGMAISMLLVVGATSLPL-DEDFSHNLSILGTL--FYIFTFAIGAGPVTG 443 (532)
Q Consensus 375 ~~~~~g~l~d~~g--~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 443 (532)
..++.++...|+. +|++. ..-.+...+...+....+.+.- +........++.++ .+..++.........
T Consensus 312 lqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~m 391 (510)
T KOG3574|consen 312 LQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGM 391 (510)
T ss_pred HHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444444444431 22111 1111222222223333222221 11111122222221 111222222223344
Q ss_pred cccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009536 444 LVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 485 (532)
Q Consensus 444 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g 485 (532)
+..+++.+|..-|+.+.+.|+..++|+-.-..+...+.|.++
T Consensus 392 af~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 667788899999999999999999999988888888887644
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=92.30 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-c
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-A 438 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 438 (532)
+.++.......+.+++.+.+|++.||+|.|+++..+.++.+++.++........ .. .+.++=+..|++.+ .
T Consensus 74 ~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-------~~-~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 74 EKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-------FY-LLLVLRFLQGLGQGVL 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-------ch-hhHHHHHHhHHHHhHH
Confidence 457888888999999999999999999999999999999998888887754311 11 22333333343333 3
Q ss_pred ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhhHhHHHHHHHHHHhhheeec
Q 009536 439 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET-FGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+++..
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 578888999999999999999999999999999999999999999 99999999999999888777665554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=85.08 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=128.2
Q ss_pred ccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHHHhhhcHHHHHH
Q 009536 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLW 182 (532)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~ 182 (532)
...-.-+|.+..|-|+ |..+.|++.+...+.....++..-.+.+|. .+|+..+...+++.++.+.+.+.+.-..+..
T Consensus 225 Y~~~~WLP~ili~~G~--sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw 302 (395)
T COG2807 225 YIVIGWLPAILIDRGL--SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW 302 (395)
T ss_pred HHHHHHHHHHHHHcCC--CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3334457899999999 999999999999999999999999999964 5788888888888888888888765433333
Q ss_pred HHHHHhhhhhhhhhhhhHhhhhcCCcc-cccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009536 183 GRFLVGLGIGVNTVLVPIYISEVAPTK-YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 183 ~r~l~G~~~g~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
-++.|+|.|..++.+...+.+..+.. +-++..++.+....+=..+||.+.|++-|..++|+..++..+...++..+.-
T Consensus 303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999887644 4466677777777777888999999999988889999988777777666555
Q ss_pred ccc
Q 009536 262 QFT 264 (532)
Q Consensus 262 ~~~ 264 (532)
+..
T Consensus 382 l~a 384 (395)
T COG2807 382 LRA 384 (395)
T ss_pred hhc
Confidence 443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-08 Score=95.22 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHh--hhcHHHHHHHHHHHhhhhhhhhhhhhH
Q 009536 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPI 200 (532)
Q Consensus 123 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~~~~ 200 (532)
+...+.+.....++..++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777888889999999999999999999888776654443333 356777888889999999999999999
Q ss_pred hhhhcCCc-------ccccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 201 YISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 201 ~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
+++|..+. ++.|...+.......+|..+|+.+++.+.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998862 223556788888888888888888876544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=89.57 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=104.0
Q ss_pred CChh--HHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH
Q 009536 358 ITDG--ALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 434 (532)
Q Consensus 358 ~~~~--~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (532)
.++. .-....+....-+..+++||++|| +|+|+.+..+.+++.++.+++.... ......+...+. ....
T Consensus 58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-------~~~~~gl~i~L~-~I~i 129 (498)
T COG3104 58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-------VSGPGGLYIGLA-LIIV 129 (498)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-------cccccHHHHHHH-HHHh
Confidence 5543 333344444455677899999999 5999999999999999999988721 011112222222 2224
Q ss_pred hccc-ccccccccccccCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 435 AIGA-GPVTGLVIPELSSNR--TRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 435 ~~~~-~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
+.|. =+....++.|++|++ +|..++++.++.-++|+.++|.+.+++.+..||+..|.+.++-..++.+..+...+
T Consensus 130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4444 366677888888643 47888999999999999999999999999999999999888888887777655543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.9e-08 Score=68.38 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=74.5
Q ss_pred hhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHH
Q 009536 99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178 (532)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~ 178 (532)
.++.+..++|.+|.|++|.++ |..+.||+.+..++||.+|.+...++.++..+++.+..++++..+..+.+++.++++
T Consensus 4 mGigRFayTplLP~M~~~~~l--s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGL--SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 466778889999999999999 999999999999999999999999999999999999999999999999999998876
Q ss_pred HH
Q 009536 179 EM 180 (532)
Q Consensus 179 ~l 180 (532)
..
T Consensus 82 ~w 83 (85)
T PF06779_consen 82 LW 83 (85)
T ss_pred HH
Confidence 54
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-08 Score=95.93 Aligned_cols=164 Identities=18% Similarity=0.098 Sum_probs=140.1
Q ss_pred hhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhc
Q 009536 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 176 (532)
++.++..+.+...+---.||.+. .+...|.....-..+-++.-++.+++.+++|+-+++.+++.+..+=.+..++.+|
T Consensus 381 v~mG~g~~lv~tFLfWHled~~~--~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n 458 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHLEDLGG--IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN 458 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC--cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence 33444444444444445677775 7777788888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhH-HHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009536 177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (532)
Q Consensus 177 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 255 (532)
.|+.+..-+++|+..+..+.+..+|+++..||+-|..+.++.+ ...++|-.+|.++||.+....+ =|..|++.++.++
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl 537 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACL 537 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 6778999999999999999988 8999999888888
Q ss_pred HHHHHhcc
Q 009536 256 ILALGMQF 263 (532)
Q Consensus 256 ~~~~~~~~ 263 (532)
+.++....
T Consensus 538 ~~l~~~~~ 545 (618)
T KOG3762|consen 538 VTLALFIS 545 (618)
T ss_pred HHHHHHHH
Confidence 76665543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-08 Score=84.51 Aligned_cols=360 Identities=15% Similarity=0.100 Sum_probs=178.1
Q ss_pred cccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHH
Q 009536 103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW 182 (532)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~ 182 (532)
....+|.+-.+-+.++. ...++|.+...-+-..++...+.|-|+|+-|||+.-+.-++...++++ .-.++.|-.+++
T Consensus 53 DWLQgPYvYyLYstYgF--gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmV 129 (454)
T KOG4332|consen 53 DWLQGPYVYYLYSTYGF--GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMV 129 (454)
T ss_pred hhhcCceeeeeehhcCc--cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEee
Confidence 34445555566677787 677778777777777788889999999999999965554444433322 234688999999
Q ss_pred HHHHHhhhhhhhhhhhhHhh-hhcCCcccccchhhHhH--------HHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHH
Q 009536 183 GRFLVGLGIGVNTVLVPIYI-SEVAPTKYRGSLGTLCQ--------VGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASL 252 (532)
Q Consensus 183 ~r~l~G~~~g~~~~~~~~~i-~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~~~~~l~~~~~-~wr~~f~~~~~ 252 (532)
+|.+.|+..+..+.+--++. .|.-. +|+.---+.. .+..+-.+++.+.+..+.+..+ +--.+|-..+.
T Consensus 130 GR~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAac 207 (454)
T KOG4332|consen 130 GRVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAAC 207 (454)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHH
Confidence 99999999999888887764 44332 2332211111 2223333444444444433221 02233333322
Q ss_pred HHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHH
Q 009536 253 PGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGA 332 (532)
Q Consensus 253 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (532)
+..+...+.+- .|-..-+++.+.+..+... +...+.+..+++ ..+...
T Consensus 208 fLaigmAvil~-----~W~ENygdps~~kdlltqf------------------------~gaa~aiaSD~k---i~LLG~ 255 (454)
T KOG4332|consen 208 FLAIGMAVILS-----SWSENYGDPSENKDLLTQF------------------------KGAARAIASDEK---IALLGA 255 (454)
T ss_pred HHHHHHHHHHh-----hhhhccCChhhhHHHHHHh------------------------hHhHHHHhcchH---HHHHHH
Confidence 22222111110 0111111111111111000 111122222222 233333
Q ss_pred HHHHhhhcchhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCc--hhhhhhHHHHHHHHHHHHHHh
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQ--KLLIGSYLGMAISMLLVVGAT 410 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~ 410 (532)
+...+....+.....|.|..-.+-....-+..+..+.++.++|+-+..++..|-..| ..+.+.+.+.++.+.+.....
T Consensus 256 iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~ 335 (454)
T KOG4332|consen 256 IQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTS 335 (454)
T ss_pred HHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHh
Confidence 343333333444444444432111112336777777777888877777776664433 344555555544444433322
Q ss_pred cCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhCcch
Q 009536 411 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE--TFGVAP 488 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~g~~~ 488 (532)
.... ........++..+.+-.+.+. .+|...-+-.+..|.+.|++.+-.+..--++...++-...- .+ ..+-+.
T Consensus 336 ~vsP-~kes~~~s~i~F~~~E~cvGl-fwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh--~~~~p~~tr~ 411 (454)
T KOG4332|consen 336 SVSP-SKESPSESLIGFCLFEACVGL-FWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLH--VDAFPTTTRN 411 (454)
T ss_pred ccCC-CcCCchHHHHHHHHHHHHHhh-cchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecc--cccCccccch
Confidence 2111 122333344444444444443 45666667778889988887766554433433332211100 11 123445
Q ss_pred hhHhHHHHHHHHHHh
Q 009536 489 VYAGFGGVSLLSALF 503 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~ 503 (532)
.|-++.+...++.+.
T Consensus 412 mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 412 MFGICSAFLFVASIL 426 (454)
T ss_pred hhhhhHHHHHHHHHH
Confidence 666666555555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=95.17 Aligned_cols=139 Identities=21% Similarity=0.117 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 439 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (532)
...+....+.++.++|.++.|.++||+|||++++.+.++..++.++.++. .+...+...=++.+.+..+..
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------PNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhccchh
Confidence 34567778889999999999999999999999999999999988777772 333334444444444445556
Q ss_pred cccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccC
Q 009536 440 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
.+...+..|.++++.|+.+..+ ..+...++.+++...+++.. +|++.+++......+..++ +++.+|.
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 7778889999999999999999 88888999999999998887 7888888877777766555 3444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=80.62 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=114.1
Q ss_pred hhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchh
Q 009536 343 NGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSH 420 (532)
Q Consensus 343 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (532)
...-...|.+.+..+.+ ++++....+..+-.++.+..+++.+|+|+|+-++.++.++++++.++..... ..
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~-------~~ 102 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS-------SK 102 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-------hh
Confidence 33444455555544444 6788888888999999999999999999999999999999999998865332 33
Q ss_pred hHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Q 009536 421 NLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET---------------- 483 (532)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~---------------- 483 (532)
........++..+.+.+. ....+.++..+.+++....-+.+.+.++.+|++++|.+.+.+..+
T Consensus 103 ~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~ 182 (422)
T COG0738 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKG 182 (422)
T ss_pred hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 344444444555555554 366678888888888888889999999999999999999998873
Q ss_pred ---hCcchhhHhHHHHHHHHHHhh
Q 009536 484 ---FGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 484 ---~g~~~~~~~~~~~~~~~~~~~ 504 (532)
..++.++...+...++..+..
T Consensus 183 ~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 183 ADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHH
Confidence 125566666666555544443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-07 Score=87.23 Aligned_cols=145 Identities=16% Similarity=0.170 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccc
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 439 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (532)
+-+.....+.++.+++.+.++.+.||++..+.+....++..+..++... ..+...+.++-++.+.+..+.+
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---------~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---------VHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHhcccc
Confidence 4467778888999999999999999999555554444443333322222 1334455555666666677778
Q ss_pred cccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 440 PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
|....++...+.+++|+.-+|+.+...++|+++|+.+...+.. ..||++.|++-+++.++..+++++++|+...
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 8888999999999999999999999999999999999988743 4679999999999999999998888876543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=91.41 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=107.4
Q ss_pred HhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh----------hcHHHHHHHH
Q 009536 115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA----------HSLDEMLWGR 184 (532)
Q Consensus 115 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------~~~~~l~~~r 184 (532)
+.+|. ++.+.|++.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-
T Consensus 281 ~~lG~--s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPG--GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 46777 89999999999999999999999999999999999999999999888664321 3334455667
Q ss_pred HHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc
Q 009536 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (532)
Q Consensus 185 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 240 (532)
++.+++.+........++.+..|++++|...++.....++|..+++.+++.+.+..
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999888776543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=85.03 Aligned_cols=178 Identities=15% Similarity=0.041 Sum_probs=133.6
Q ss_pred HHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHH------HHHHH-HHHHHHHHHHHhhhccccccchhHHHHH
Q 009536 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILE------GLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQI 159 (532)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s-~~~l~~~~~~~~~G~l~dr~Grr~~l~~ 159 (532)
+.++..+...|+.-......+.....+.+..++..+.... ..... +-..++..+..+...+.|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5577778888888888888888888888888873222211 11111 1223333466778889999999999999
Q ss_pred hhHHHHHHHHHHHhhhc-H-------HHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHH
Q 009536 160 DTIPLILGAIISAQAHS-L-------DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF 231 (532)
Q Consensus 160 ~~~~~~~~~~~~~~a~~-~-------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 231 (532)
|.+++++..+..+...| . ....+..++.-+| .......+-+|.+|.+-|+..-|+..+..-.|.++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999998766 1 1122233333333 33344556799999999999999999999999999999
Q ss_pred hcCCCCC-----CcchhHHHHHhhHHHHHHHHHHhcccccCh
Q 009536 232 LGIPAED-----DPHWWRTMLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 232 ~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
.-.++.+ ..+ -|+.|++.+...++..+..+++||+.
T Consensus 461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence 9888887 555 89999999999999999999999874
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=86.66 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-cc
Q 009536 362 ALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GP 440 (532)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 440 (532)
++......++..++.++.|+++|++|||+.+.++.+...++.++..... ....+...=+..+++.|. ..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHhccchhhhhh
Confidence 6888888999999999999999999999999999999999999988832 333333333334444443 34
Q ss_pred ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--CcchhhHhHHHHHHHHHHhhheeeccC
Q 009536 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF--GVAPVYAGFGGVSLLSALFAYYFIVET 511 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (532)
+...+.+|..|++.||...+..+....+|..++ .+.+...++. +|+..+.+..+.+++..+. .++.||+
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 566889999999999999999999998777777 6666666553 7887777766666666655 5666653
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.9e-07 Score=79.72 Aligned_cols=350 Identities=15% Similarity=0.122 Sum_probs=199.6
Q ss_pred HHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccc
Q 009536 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213 (532)
Q Consensus 134 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 213 (532)
.-.+.+.-++.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++-|...+ ...+-++++-+..+++++.+
T Consensus 52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqr 130 (433)
T KOG3810|consen 52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKR 130 (433)
T ss_pred hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHH
Confidence 44455666677789999999999999888888888888899999999999999999865 66778889999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHhcCCCCCCcc-hhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcc
Q 009536 214 LGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESE 292 (532)
Q Consensus 214 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 292 (532)
+.+.-.+..-.|-..|..++..+..... +....-.+......+..+..+++|..+|.+.-+.+.++.. ..+..+.+.
T Consensus 131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~ 208 (433)
T KOG3810|consen 131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNP 208 (433)
T ss_pred HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCc
Confidence 9999998888888888888877765443 1344444544445555666677776654332222222110 000000000
Q ss_pred hHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCChh----HHHHHHH
Q 009536 293 INKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDG----ALASLLV 368 (532)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 368 (532)
..+.....+...........+..++|.. +...+.+....+++.-...|....-+....... |..=...
T Consensus 209 ----~~~~~~~l~~~~~~l~~~l~~~y~np~l----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~ 280 (433)
T KOG3810|consen 209 ----QASYMSYLRGAFVLLWRDLQECYSNPRL----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVS 280 (433)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHhcCchh----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHH
Confidence 0000000000000001123334445432 222334444455666677777777666643332 3334445
Q ss_pred HHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccccccc
Q 009536 369 GVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPE 448 (532)
Q Consensus 369 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (532)
.+.+.++.+..|.+.-.+.|..-+.++..-...+..++.... ..+.++......++...+... .++....+++
T Consensus 281 tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~------t~~Iw~~Ya~yvlfr~~y~l~-itiA~~~iA~ 353 (433)
T KOG3810|consen 281 TLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ------TQHIWVCYAGYVLFRVIYQLT-ITIATFQIAR 353 (433)
T ss_pred HHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc------ccceehhhhhHHHHHhhHhhh-hhHHHHHHHH
Confidence 666777888888887777666433333332222222222211 122233333333333333332 2333344555
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC-----------cchhhHhHHHHHHHHHHhh
Q 009536 449 LSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-----------VAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 449 ~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-----------~~~~~~~~~~~~~~~~~~~ 504 (532)
....+.-|..+|+..++.-+-..+-..+ ..|..| |..-|.+.+++.++.....
T Consensus 354 nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred hhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 5677788999998776555444333322 234222 4445667777777765544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=84.66 Aligned_cols=149 Identities=15% Similarity=0.060 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhcCC-chhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKEGR-QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA 438 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (532)
-.|+......++..++.++.|+...|.+. |+.++.+.++++++.++.......+ +....+....=+..|++.+.
T Consensus 72 ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-----~~~~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 72 FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-----NGVKYLMLVARILTGVGVGN 146 (488)
T ss_pred hhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHcCcCccc
Confidence 34788888999999999999999999886 7888889999999998885543322 21333344444445555555
Q ss_pred ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hC-----------cchhhHhHHHHHHHHHHhhh
Q 009536 439 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET--FG-----------VAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~--~g-----------~~~~~~~~~~~~~~~~~~~~ 505 (532)
....-.|+++..-.+.|.++++..+...-+|.++||.+...+... .| |..+-++.+.+.++..++..
T Consensus 147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 567778888877777899999988887778888887765544321 01 45666777888888777777
Q ss_pred eeeccCCC
Q 009536 506 YFIVETKG 513 (532)
Q Consensus 506 ~~~~~~~~ 513 (532)
++.+|..+
T Consensus 227 ~~f~E~~~ 234 (488)
T KOG2325|consen 227 FFFKEVYR 234 (488)
T ss_pred hheeeccc
Confidence 77766443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-06 Score=68.85 Aligned_cols=106 Identities=10% Similarity=0.062 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCc
Q 009536 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208 (532)
Q Consensus 129 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 208 (532)
-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+++...++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3555566677888888999999999999999999998655554 456788899999999999999999999999999999
Q ss_pred ccccchhhHhHHHHHHHHHHHHHhcCC
Q 009536 209 KYRGSLGTLCQVGTCLGIITSLFLGIP 235 (532)
Q Consensus 209 ~~r~~~~~~~~~~~~~g~~~g~~~~~~ 235 (532)
++|++..+++......+.++|.++.-.
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888888766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-06 Score=73.90 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=96.9
Q ss_pred hhhcchhhHHHhHHHHHHHcCCChhH--HHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCC
Q 009536 337 QQFAGINGVLYFSSLTFQDVGITDGA--LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL 414 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (532)
......+.+..|.+.+-+..+.++.. .......++..+ .+..|.+.|++|++.++.++.....++..++.....-..
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33445667788888888888888664 334445566665 478899999999999999999999999988877543221
Q ss_pred CccchhhHHHHHHHHHHHHHhccc-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 415 DEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
.....+...+..+..+.+.+. .........+.+|. +||++.|+.-....+++++-..+...+.+.
T Consensus 92 ---~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 92 ---PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ---CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 112333333343444433332 23333334477875 699999999999999998888877776654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=81.30 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=109.6
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
+...++..++.....+..+.....+.+ +.+++++....+.......+..++.+++.++++|+|+|+++.++.++.+++.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~-y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVT-YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEE-EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 444444445555555555555544433 3444467777788888888888889999999999999999999999999999
Q ss_pred HHHHhhh--cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCc-------ccccchhhHhHHHHHHHHHHHHHhcCCC
Q 009536 169 IISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (532)
Q Consensus 169 ~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l 236 (532)
++.-+.+ +.+.+++..++.++|.+...+...++++|..+- +.-|...+......=+|..++..+.++.
T Consensus 317 ~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 317 LLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988875 788889999999999999999999999887753 2226666766666666666666554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.1e-06 Score=80.96 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccc
Q 009536 368 VGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIP 447 (532)
Q Consensus 368 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (532)
.++..++..+..|.++|++|||..+........+..+.+.+ ..++.++ .....+.........+++++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~----------~~~~~~~--~~~l~g~~~~~~s~~~a~va 138 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF----------QGYWFFL--LLGLSGGFSAIFSVGFAYVA 138 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH----------HHHHHhh--hcccccchhhhhhhhhhhee
Confidence 36777888899999999999999999888888777777766 2222222 22222222233456778899
Q ss_pred cccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHH
Q 009536 448 ELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 517 (532)
Q Consensus 448 ~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (532)
+....+.|....|+.+.....+..++|.+.+.+.+..|+..+|.+..+..++..+...+++||+..++.+
T Consensus 139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999998888888887655433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-09 Score=102.78 Aligned_cols=160 Identities=19% Similarity=0.097 Sum_probs=103.0
Q ss_pred ccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHH--h--h-h---
Q 009536 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--A-H--- 175 (532)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--a-~--- 175 (532)
.......+.+.++.+. +.. -+......+...++.++...+.||+|||++++.+..+.+++.+..+ . . +
T Consensus 270 ~~~~~~~~~i~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGI--SNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS 345 (451)
T ss_pred cccccccccccccccc--ccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344445667777776 333 1222233344556677777999999999999999999888887775 1 1 1
Q ss_pred --cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHH
Q 009536 176 --SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP 253 (532)
Q Consensus 176 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~ 253 (532)
++..+............+..+....+..|.+|.+.|++..++......++..+++.+...+.+..+ -...|++.+..
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~ 424 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGV 424 (451)
T ss_pred ccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHH
Confidence 122222222211122223456666788999999999999999998888999888888877776554 13444554444
Q ss_pred HHH-HHHHhcccccCh
Q 009536 254 GFI-LALGMQFTVESP 268 (532)
Q Consensus 254 ~~~-~~~~~~~~~~~p 268 (532)
+++ .++..+++||+.
T Consensus 425 ~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETK 440 (451)
T ss_pred HHHHHhheeEEEeeCC
Confidence 444 445567788873
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.9e-06 Score=80.80 Aligned_cols=115 Identities=15% Similarity=0.020 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhh--cHHHHHHHHHHHhhhhhhhhhhhh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVP 199 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~ 199 (532)
++...+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888899999999999999999999988766555544444433332 233445555677888777777767
Q ss_pred HhhhhcCC-------cccccchhhHhHHHHHHHHHHHHHhcCCC
Q 009536 200 IYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (532)
Q Consensus 200 ~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 236 (532)
+++.|..+ +++.|..++......-+|..+++.+++.+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765 22224445665566666666666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.5e-06 Score=76.80 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=121.8
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc-ccchhHHHHHhhHHHHHHHHHHHhh---hcHHHHHHHHHH
Q 009536 111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-KLGCRRTFQIDTIPLILGAIISAQA---HSLDEMLWGRFL 186 (532)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l 186 (532)
|+=.+-||+ +..+..-+.+.+..|..++....|++.. |.++|+.-.+|+.+.+++..+..++ .+.+.+...-++
T Consensus 233 Pygg~Vfgm--sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l 310 (403)
T PF03209_consen 233 PYGGEVFGM--SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL 310 (403)
T ss_pred CchhHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 344566888 8888899999999999999999998877 7888888888888887777765544 578889999999
Q ss_pred HhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCc---------chhHHHHHhhHHHHHHH
Q 009536 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------HWWRTMLYIASLPGFIL 257 (532)
Q Consensus 187 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------~~wr~~f~~~~~~~~~~ 257 (532)
.|++.|.......+...+...+++.|..+|.++....++..++..+++.+.|.. ..+-..|.+.++..++.
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA 390 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888665421 12667777766666655
Q ss_pred HHHh
Q 009536 258 ALGM 261 (532)
Q Consensus 258 ~~~~ 261 (532)
+++.
T Consensus 391 ~~ll 394 (403)
T PF03209_consen 391 LVLL 394 (403)
T ss_pred HHHH
Confidence 5443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00043 Score=69.56 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=129.8
Q ss_pred CchHHHHHHHHHHhhhhhhcc-ccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHh
Q 009536 83 LPAFPHVLIASMSNFLFGYHI-GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQID 160 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~ 160 (532)
...|+....+.....+..+.. +.....+..+.++++. +...+.-..+.+.-......+.++.++|-| ||-+++.++
T Consensus 33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~--~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~ 110 (571)
T KOG1237|consen 33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHA--SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIG 110 (571)
T ss_pred echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhcc--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444433333333333333 4456777888999998 567777778888888888889999999975 899999999
Q ss_pred hHHHHHHHHHHHhhhcH-------------------------HHHHHHHHHHhhhhhhhhhhhhHhhhhcCC---ccc--
Q 009536 161 TIPLILGAIISAQAHSL-------------------------DEMLWGRFLVGLGIGVNTVLVPIYISEVAP---TKY-- 210 (532)
Q Consensus 161 ~~~~~~~~~~~~~a~~~-------------------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~-- 210 (532)
.++..++.++..++... ..++...-+..+|.|+.-+...+.-+|-++ +++
T Consensus 111 s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~ 190 (571)
T KOG1237|consen 111 SLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVK 190 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhh
Confidence 99988887665543211 245666778888999999999999999998 322
Q ss_pred -ccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHh
Q 009536 211 -RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (532)
Q Consensus 211 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 261 (532)
+..-+.++....++|..++..+-.+..+..+ |.+-|.+..+..++.++++
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIF 241 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHH
Confidence 2367888888999999999988888877777 9999988777776655544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-05 Score=71.12 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhhccccccchhHHHHHh--hCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc-----ccchhHHHHHhh-
Q 009536 90 LIASMSNFLFGYHIGVMNGPIVSIAKE--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-----KLGCRRTFQIDT- 161 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~l~~~~- 161 (532)
.++.+.+++.+...+.....+|.+.++ -+. +..+.+...- -...+. .-++|.++.| |+||||..++=.
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~--sy~q~~~fSl-a~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKV--SYSQQAIFSL-ASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCC--ChhHheeeee-eechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence 455666788888888877778888887 455 6666553221 111111 2445555555 899998776532
Q ss_pred HHHHHHHHHHHhhh----------------------c--HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhH
Q 009536 162 IPLILGAIISAQAH----------------------S--LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL 217 (532)
Q Consensus 162 ~~~~~~~~~~~~a~----------------------~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 217 (532)
.+.++..+..+..- + ...+...-++.=+-.+.--.+.-.+.-....+++++.+..-
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 22233333322111 0 11222333333333445555566666677788889988888
Q ss_pred hHHHHHHHHHHHHHhcCCCC
Q 009536 218 CQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 218 ~~~~~~~g~~~g~~~~~~l~ 237 (532)
...|.++|..++..+--.+.
T Consensus 159 qtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHhHhhhhHHHHHHHHHhhC
Confidence 88888888888766654443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=59.15 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=60.5
Q ss_pred HHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
+....+......+...|.+|...++.|+ ++.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl--~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGL--SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3444566666777788889999999999 9999999999999999999999999999999988887766554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00052 Score=64.45 Aligned_cols=172 Identities=13% Similarity=-0.048 Sum_probs=85.2
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH---HH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP---LI 165 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~---~~ 165 (532)
.++.++..+......+.+..+.+++.+++-..+. .......+.+...+..++...+--+...|....++..+ ..
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~---~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~i 96 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN---SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAI 96 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555667777778888888754222 33444444444444444444444433322222222222 12
Q ss_pred HHHHHHHhh---------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHh----
Q 009536 166 LGAIISAQA---------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL---- 232 (532)
Q Consensus 166 ~~~~~~~~a---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~---- 232 (532)
+..+.+.++ ..|...++.-.+.|++.|......+...++ +|++.-+..+ .|.++++++..++
T Consensus 97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~t 171 (406)
T KOG1479|consen 97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILT 171 (406)
T ss_pred HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHH
Confidence 222222222 245666677788888888887777766554 5655433222 3333333333222
Q ss_pred cCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccCh
Q 009536 233 GIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268 (532)
Q Consensus 233 ~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p 268 (532)
-....+...+=..-|.+..++.+++.++...+++.|
T Consensus 172 ka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 172 KAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcch
Confidence 222222222133445555666666666666666655
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=66.30 Aligned_cols=154 Identities=13% Similarity=0.062 Sum_probs=89.5
Q ss_pred HHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHH
Q 009536 351 LTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTL 428 (532)
Q Consensus 351 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (532)
..+++.|.. +....+....+...+...+.|.+.||+|||+..+...++.+++++..-. .+....++.=+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~~~L~~GRv 129 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNYPVLLLGRV 129 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHH
Confidence 344566766 4556666666777788889999999999999988888888888765433 11111222112
Q ss_pred HHHHHHhcccccccccccccc----cCccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhhCc--chhhHhHHHHHHHHH
Q 009536 429 FYIFTFAIGAGPVTGLVIPEL----SSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLVETFGV--APVYAGFGGVSLLSA 501 (532)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~ 501 (532)
+.+.....-...--..++.|. +|++..+...+...+. +.+..+++..+...+.+..|. ..+|.....+.+++.
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 222111111111111233333 4555555555555422 334445555566666676654 678888888888777
Q ss_pred HhhheeeccCCC
Q 009536 502 LFAYYFIVETKG 513 (532)
Q Consensus 502 ~~~~~~~~~~~~ 513 (532)
++.....+|..+
T Consensus 210 ~~I~~~W~ENyg 221 (354)
T PF05631_consen 210 VLILKTWPENYG 221 (354)
T ss_pred HHHHhcccccCC
Confidence 776666666543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0017 Score=62.10 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCC-CChhHHHHHHHHHHH-HHHHHHHhhhccccccchhHHHHHhhH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
.++.++.+.+..++..+..+. +-.+.+.+.+. .++..+.++=+...+ +..+..++.+++.+++.+.+++-+-+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 344455555555555555543 44555655543 245566777777777 667889999999999999999988888
Q ss_pred HHHHHHHHHHhh---------hc-----------------------HHHHHHHHHHHhhhhhhhhh-hhhHhhhhcCCcc
Q 009536 163 PLILGAIISAQA---------HS-----------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTK 209 (532)
Q Consensus 163 ~~~~~~~~~~~a---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~ 209 (532)
.+....+++++. ++ .|...+.-...-+-...... .-.....|.+..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 887777777753 11 02222222333333333333 3455678889989
Q ss_pred cccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 210 YRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 210 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
|-.|..++++.+.+++..++..+..++..+
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988888764
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0014 Score=64.47 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCC-CChhHHHHHHHHHHH-HHHHHHHhhhccccccchhHHHHHhhH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTI 162 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~ 162 (532)
.++.++.+.+..|+..+..+.. -.+.+.+=++ .++..+.++=....+ ...+...+..++++++++.+++-+...
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~ 97 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIII 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4445666666666666655432 2222222110 133344455443333 344567788999999999998887777
Q ss_pred HHHHHHHHHHhh---------hc----------------------HHHHHHHHHHHhhhhhhhhh-hhhHhhhhcCCccc
Q 009536 163 PLILGAIISAQA---------HS----------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKY 210 (532)
Q Consensus 163 ~~~~~~~~~~~a---------~~----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~ 210 (532)
.+.....++++. ++ .|.+.+.-++.-+-...... .-..+..|.++.+|
T Consensus 98 ~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e 177 (491)
T PF03219_consen 98 PFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE 177 (491)
T ss_pred HHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 776666666542 11 11222222333333333333 45778899999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 211 RGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 211 r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
-.|..++++.+.++|.++++.+..++.+
T Consensus 178 AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 178 AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=69.53 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhcCCc-hhhhhhHHHHHHHHHHHHHHhcCCCCcc---chhhHHHHHHHHHHHHHhcc
Q 009536 362 ALASLLVGVTNFAGALCASYLMDKEGRQ-KLLIGSYLGMAISMLLVVGATSLPLDED---FSHNLSILGTLFYIFTFAIG 437 (532)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 437 (532)
-.....+.++..+|+.+..+.. ..++| +.+.+..+.=.+.+.++.++ ....... .-...+...+..+..++..|
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lc-n~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLC-NYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHh-cCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 3455667899999998665431 11222 12222222222322232222 2111000 00122223333444555555
Q ss_pred c-ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 009536 438 A-GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477 (532)
Q Consensus 438 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 477 (532)
. ......+..+..++++|..+..+...+..+|-.+|..+.
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 355556677778888898888888888888887776553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00031 Score=71.98 Aligned_cols=149 Identities=10% Similarity=0.063 Sum_probs=95.5
Q ss_pred cCCChh--HHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHH
Q 009536 356 VGITDG--ALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIF 432 (532)
Q Consensus 356 ~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (532)
.+.++. ......+....-+..+++|++.|+ +|+++.+.++.++..++..++.+... +....... .......+...
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~~~~~-~~~~l~gLaLi 95 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSGHPLH-DLLDLLGLALI 95 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccccchH-HHHHHHHHHHH
Confidence 455433 333334444455667788999996 79999999999988888877765321 10000011 11122222233
Q ss_pred HHhcc-cccccccccccccCcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-------CcchhhHhHHHHHHHHH
Q 009536 433 TFAIG-AGPVTGLVIPELSSNR---TRGKIMGFSFSVHWVCNFLVGLFFLDLVETF-------GVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 433 ~~~~~-~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~ 501 (532)
..+.+ .-|...+...|.++++ .+-+.+.+.....++|+.+++.+.+++.+.. +|...|.+.+++.+++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 33333 3466667777777643 3677888899999999999999999887553 47778888877777776
Q ss_pred Hhhhe
Q 009536 502 LFAYY 506 (532)
Q Consensus 502 ~~~~~ 506 (532)
++...
T Consensus 176 lvf~~ 180 (654)
T TIGR00926 176 IVFMA 180 (654)
T ss_pred HHHHH
Confidence 66544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.4e-05 Score=71.45 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=88.6
Q ss_pred HHHHHhhHHHHHHHHHHHhhh---c------HHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcc---cccchhhHhHHHH
Q 009536 155 RTFQIDTIPLILGAIISAQAH---S------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK---YRGSLGTLCQVGT 222 (532)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~a~---~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 222 (532)
+++++|.++..+|.++..++. + .+.++++-++.++|.|+.-+....+++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888889999988855442 2 357889999999999999999999999999866 3567888899999
Q ss_pred HHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc
Q 009536 223 CLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263 (532)
Q Consensus 223 ~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
++|..++..+.+++.+..+ |.+.|.+.++..++.++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999998888 999999988887776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00052 Score=65.04 Aligned_cols=111 Identities=23% Similarity=0.179 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH-----HHHHHHHhhhcHHHHHHHHHHHhhhhhhhhh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI-----LGAIISAQAHSLDEMLWGRFLVGLGIGVNTV 196 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~-----~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 196 (532)
...+..+...+|.+|-.++.--...+ |+ |++.+...+-.. +.....-+.++.|.+++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45577788888888877764432221 33 444444333222 2222233457899999999999999999999
Q ss_pred hhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCC
Q 009536 197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA 236 (532)
Q Consensus 197 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 236 (532)
.....+.|-.++++|..+++..+.+.++|.+++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=65.25 Aligned_cols=151 Identities=20% Similarity=0.290 Sum_probs=93.1
Q ss_pred HHHcCCChhHHHHHHHHHHHH--HHhhhhHhhhhhc-----CCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 009536 353 FQDVGITDGALASLLVGVTNF--AGALCASYLMDKE-----GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSIL 425 (532)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
.++.+.+.+. ......+..+ ...++.|.++|-+ .||..++++.++..++...+...+.. .......
T Consensus 17 ~~~l~ls~~~-~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------~~s~~~~ 89 (433)
T PF03092_consen 17 KDDLGLSPAQ-LQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------ESSAAIA 89 (433)
T ss_pred HHHcCCCHHH-HHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc------cchhhhH
Confidence 3456666442 2223333333 4467889999986 34455566666665555555553221 1122222
Q ss_pred HHHHHHHHHhcccc-ccccccccccc---CccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHH
Q 009536 426 GTLFYIFTFAIGAG-PVTGLVIPELS---SNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSA 501 (532)
Q Consensus 426 ~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 501 (532)
..+++...++.... .+..++..|.. |.+ +|...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 22333333333322 33445555655 444 78888999999999999999999999999999999988888777776
Q ss_pred HhhheeeccC
Q 009536 502 LFAYYFIVET 511 (532)
Q Consensus 502 ~~~~~~~~~~ 511 (532)
+..++..+|+
T Consensus 169 ~~~~~~~~e~ 178 (433)
T PF03092_consen 169 IVALFLLEER 178 (433)
T ss_pred HHHHHhhhhc
Confidence 6666666653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=46.47 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=52.6
Q ss_pred HHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH
Q 009536 333 LFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG 398 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 398 (532)
...+..++.......|.+.++++.|.+ +.+....+..+..+++.++.|+++||+++++........
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334455667777888899999888877 558888888899999999999999999999887655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0071 Score=49.42 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccc
Q 009536 363 LASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 442 (532)
Q Consensus 363 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (532)
....+......+..++.+.+.+++|.|+.++++.++..+-...... .+.+..+....+.+.+. ...+...
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---------~~~~~l~~~s~l~G~~~-a~lW~aq 110 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---------PNSYTLYPASALLGFGA-ALLWTAQ 110 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhh-HHhhHhh
Confidence 3444555667777888899999999999999988877755554433 12222222222222222 2234555
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 443 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV 481 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 481 (532)
..++.+...++.+++..++...+.+.+.++|..+.-.+.
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999999998888888776655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0058 Score=53.61 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccccchhhHhHHHHHHHHHHHHHhcCCCCC-----CcchhHHHHHhhHHHHHHHHHHhccc
Q 009536 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAED-----DPHWWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 209 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|+|+..+.+...+.++|.++.-..--.-.+ ... |++.+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~-W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNN-WQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888899998776544222211 123 9999999888877666655544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0048 Score=58.47 Aligned_cols=135 Identities=12% Similarity=0.014 Sum_probs=84.0
Q ss_pred hhhHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhh
Q 009536 342 INGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHN 421 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (532)
+..+..+...++. +.+.+-+...++.+..++..+.+.|+.||+|-|....++..+.+++..+=..... +.- .+.
T Consensus 64 ya~i~n~~~~~Yg--s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-p~v---~~~ 137 (480)
T KOG2563|consen 64 YAPINNYVNSFYG--SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-PFV---PPL 137 (480)
T ss_pred ehhHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-ccc---ccc
Confidence 3444444444433 2334467777888899999999999999999999999999998888776443211 100 111
Q ss_pred HHHHHHHHHHHHHhccccccc----ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009536 422 LSILGTLFYIFTFAIGAGPVT----GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET 483 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 483 (532)
... .+...+........+.. .-...--+|+++|+++..+..+.+.+|.+++-.+-..+..+
T Consensus 138 f~~-~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 138 FRR-PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred chh-hhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 111 11111111111111111 12233457999999999999999999999888877766644
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=59.30 Aligned_cols=135 Identities=18% Similarity=0.078 Sum_probs=80.9
Q ss_pred HHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH---HHHHHH----HhhhcH-HHHHHHHH
Q 009536 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI---LGAIIS----AQAHSL-DEMLWGRF 185 (532)
Q Consensus 114 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~---~~~~~~----~~a~~~-~~l~~~r~ 185 (532)
.--+|- +....+.+.++|++|.++|+.+++++.++.-++.. .+-+.+.. +...+. ++...+ ..++..-+
T Consensus 42 ~~~~G~--s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 118 (521)
T PRK03612 42 SYLLGD--SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVL 118 (521)
T ss_pred HHHhCc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344565 77788999999999999999999988744333322 11111111 111111 111111 12234456
Q ss_pred HHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC-CcchhHHHHHhhHH
Q 009536 186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPHWWRTMLYIASL 252 (532)
Q Consensus 186 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~wr~~f~~~~~ 252 (532)
+.|+..|+..|....+..+... ++-++..|-......+|.++|.++.+++.- ..|..+..+.+..+
T Consensus 119 ~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 119 LIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6788888888887776655332 224667788888888999999888776643 45535555544433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.014 Score=56.65 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=107.7
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
+++..++..+-++..-.+...+..+...-|+ ++..+|..-+.-.+....+.+...++.+|+|..+.=++++..-.+..
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~--s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L 337 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGY--SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL 337 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 4455555444454444456666666666688 99999999999999999999999999999999888777776554444
Q ss_pred HHHHh---h---h----cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 169 IISAQ---A---H----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 169 ~~~~~---a---~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
.++.. . + +...++.+-.+.=+|.=....+..-++.|..|+++||...|.-....++--++...++-.+.+
T Consensus 338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 43332 1 2 333444444555555556677777899999999999999999999888888888777665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=57.04 Aligned_cols=108 Identities=8% Similarity=-0.107 Sum_probs=70.8
Q ss_pred HHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccch-----------------------hhHHHHHHHHH
Q 009536 374 AGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFS-----------------------HNLSILGTLFY 430 (532)
Q Consensus 374 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 430 (532)
+..++.+++++|++|++++..........++++.+... +..+..+ ..+......+.
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~-p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~ 137 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIY-PLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM 137 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHh-cchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH
Confidence 33778899999999999887766666555555544321 1000000 01111222222
Q ss_pred HHHHhccccc-ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 431 IFTFAIGAGP-VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 431 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
.-.++....+ +.+..++|.+..++..+-+++....+++|..+++.+..++.+
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333 667889999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.023 Score=57.97 Aligned_cols=181 Identities=14% Similarity=0.040 Sum_probs=115.8
Q ss_pred HHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHH
Q 009536 330 GGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVV 407 (532)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 407 (532)
...+..+.+......+....+.+-+.++.. +.++....+-++..+......+...|..|-+.+-++.++++++.++..
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~a 180 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFA 180 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHh
Confidence 333333333333344444444444445544 456666777788888888889999999999999999999999888876
Q ss_pred HHhcCC---------------CC----------------------c---cchhhHHHHHHHHHHHHHhccc---cccccc
Q 009536 408 GATSLP---------------LD----------------------E---DFSHNLSILGTLFYIFTFAIGA---GPVTGL 444 (532)
Q Consensus 408 ~~~~~~---------------~~----------------------~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 444 (532)
+--.+. .. . ...+...++.+++.....++|. .++..+
T Consensus 181 lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGis 260 (735)
T KOG3626|consen 181 LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGIS 260 (735)
T ss_pred ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCc
Confidence 531000 00 0 0112222333333333334443 466778
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh------------------hC-cchhhHhHHHHHHHHHHhhh
Q 009536 445 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVET------------------FG-VAPVYAGFGGVSLLSALFAY 505 (532)
Q Consensus 445 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~------------------~g-~~~~~~~~~~~~~~~~~~~~ 505 (532)
|+.|...+++.....|+..++.-+|-++|-.+++.+... .| |+..|++.+++.++..+..+
T Consensus 261 YiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f 340 (735)
T KOG3626|consen 261 YIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF 340 (735)
T ss_pred cccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888776532 12 55667777777777776664
Q ss_pred eeeccC
Q 009536 506 YFIVET 511 (532)
Q Consensus 506 ~~~~~~ 511 (532)
+ .|+.
T Consensus 341 ~-fPk~ 345 (735)
T KOG3626|consen 341 F-FPKE 345 (735)
T ss_pred h-Cccc
Confidence 4 4443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.11 Score=47.25 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCC
Q 009536 134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207 (532)
Q Consensus 134 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 207 (532)
.+..+.++++.+.+..++|.|..++++.......- ..=+-+.+..++..-.+.|++.+..+..--+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 44555666777789999999999988877765422 22233678889999999999999998888777766543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0092 Score=57.66 Aligned_cols=119 Identities=8% Similarity=-0.003 Sum_probs=77.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccc-ccccccccccccCcc---ccchhHHHHHHH
Q 009536 390 KLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGA-GPVTGLVIPELSSNR---TRGKIMGFSFSV 465 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~g~~~~~ 465 (532)
+.+.++.++..++.+++.+........... ....+.+.+.....+.|. =|....+..|.++++ ++.+.+..++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~-~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGI-QLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhH-HHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 456778888888888865543322111111 112222222233333333 366777788888654 466778888999
Q ss_pred HHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeec
Q 009536 466 HWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIV 509 (532)
Q Consensus 466 ~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.++|..++..+.+++.++.||...|.+.++..+++.++.+.-.+
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999988888888776655433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.00064 Score=63.52 Aligned_cols=113 Identities=17% Similarity=0.080 Sum_probs=2.5
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhc-CCchhhhhhHHHHHHHHHHHHHHhcCCC---CccchhhHHHHHHHHHHHHHhccc-
Q 009536 364 ASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPL---DEDFSHNLSILGTLFYIFTFAIGA- 438 (532)
Q Consensus 364 ~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 438 (532)
.+..+.++..+|+.+.++..-+. .+|++.. ..+.=.+.+.++..+...+. .+..-...+...+..+..++..|.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567899999999888743221 2333332 22222222222222111110 000111122233344455555555
Q ss_pred ccccccccccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 009536 439 GPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 477 (532)
.+....+..+..+++.|..+..+......+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888888777777777776543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.13 Score=47.75 Aligned_cols=142 Identities=21% Similarity=0.143 Sum_probs=85.5
Q ss_pred HhHHHHHHHcCCC----hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhH
Q 009536 347 YFSSLTFQDVGIT----DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNL 422 (532)
Q Consensus 347 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (532)
...+.+..+.+.. ..++......+...++.++.|++.||.|||+.+..+.....++.+...+.. ....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 94 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------NVGL 94 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------cchH
Confidence 3444444454433 346677777788888889999999999999777766655344433333311 1112
Q ss_pred HHHHHHHHHHHHhcc-cccccccccccccCc-cccchhHHHHHH-HHHHHHHHHHHHHHHHHHh--hCcchhhHhHHHH
Q 009536 423 SILGTLFYIFTFAIG-AGPVTGLVIPELSSN-RTRGKIMGFSFS-VHWVCNFLVGLFFLDLVET--FGVAPVYAGFGGV 496 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~--~g~~~~~~~~~~~ 496 (532)
..........+.+.+ ..+....+..|..|. +.++...+.... ...++..+++.+.+.+... .+|+..+......
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 222222222233332 346677788888887 568888888888 5777888888777766654 3455544444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0013 Score=66.21 Aligned_cols=167 Identities=17% Similarity=0.061 Sum_probs=1.1
Q ss_pred hhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCC-----
Q 009536 342 INGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPL----- 414 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 414 (532)
.......++.+-++++.+ +.++.....-++.++..++..++.+|..|-+.+-.+.++++++.+++.+-.....
T Consensus 19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 333334444554555554 5688888888999999999999999988888888888888888877754211100
Q ss_pred ---------------C------------------ccchhhHHHHHHHHHHHHHhccc---ccccccccccccCccccchh
Q 009536 415 ---------------D------------------EDFSHNLSILGTLFYIFTFAIGA---GPVTGLVIPELSSNRTRGKI 458 (532)
Q Consensus 415 ---------------~------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 458 (532)
. ...........+++.....+.|. .++..+|+.|.++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY 178 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY 178 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence 0 00011111222222222333333 36777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------------------hC-cchhhHhHHHHHHHHHHhhheee
Q 009536 459 MGFSFSVHWVCNFLVGLFFLDLVET---------------------FG-VAPVYAGFGGVSLLSALFAYYFI 508 (532)
Q Consensus 459 ~g~~~~~~~~g~~i~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
.|+......+|.++|-.+++...+. .| |...|++.+.+.++..+....+-
T Consensus 179 iGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 179 IGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999888887777655421 12 55556666666666665554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.15 Score=48.82 Aligned_cols=123 Identities=18% Similarity=0.089 Sum_probs=78.9
Q ss_pred HHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC
Q 009536 372 NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS 451 (532)
Q Consensus 372 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (532)
.+...+....+.|.++.|++++++.+...+...++.+. ......-+.-+..+...+.-.+.++++=...|
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~----------~sv~~mq~~q~~yg~~~a~evay~sYiys~v~ 123 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG----------TSVLAMQLMQFFYGLATAAEVAYYSYIYSVVD 123 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence 44455667889999999999999888877777776662 22222222222223333333445566666778
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC--cchhhHhHHHHHHHHHHhh
Q 009536 452 NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG--VAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 452 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~ 504 (532)
+++--++.+......-+|..++..++..+....+ +.....+..+...++.++.
T Consensus 124 ~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~ 178 (412)
T PF01770_consen 124 KEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA 178 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999888988888888877766433 4444444444444444443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.34 Score=47.30 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=95.1
Q ss_pred HHHHHHHhhhhhhccccccchhHH---HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcccc---ccchhHHHHHhhH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVS---IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD---KLGCRRTFQIDTI 162 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~d---r~Grr~~l~~~~~ 162 (532)
++++....+..++..+......|. .....+.+ +....+...-...++..+++.+.+.+++ ++||++.+.++..
T Consensus 242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n-~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~ 320 (461)
T KOG3098|consen 242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSN-TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGII 320 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCc-chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHH
Confidence 344444445555555444444432 22222321 2222333333344444555566666664 5799999999999
Q ss_pred HHHHHHHHHHhh------------------hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH
Q 009536 163 PLILGAIISAQA------------------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224 (532)
Q Consensus 163 ~~~~~~~~~~~a------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 224 (532)
+..++.++.-.. +++...++.-++.|++-+......+.++.+.+ +++|..+.++...-..+
T Consensus 321 ~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~ 399 (461)
T KOG3098|consen 321 IHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSV 399 (461)
T ss_pred HHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHH
Confidence 888888777653 24666778889999999999999999999999 55589999999888888
Q ss_pred HHHHHHHhcCC
Q 009536 225 GIITSLFLGIP 235 (532)
Q Consensus 225 g~~~g~~~~~~ 235 (532)
+..++......
T Consensus 400 ~s~v~~f~~~~ 410 (461)
T KOG3098|consen 400 ASCVAFFFSPY 410 (461)
T ss_pred HHHHHhhhhhh
Confidence 88777665443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.19 Score=50.61 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhhHhHHHHHHHHHHhh
Q 009536 455 RGKIMGFSFSVHWVCNFLVGLFFLDLVE-TFGVAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 455 ~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 504 (532)
.+...|-.+....+|+++|+.+.+.+.- ..|.....++.+.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999987764 6776666666665555544433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=49.29 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchh--HHHH--HhhHHHHHHHHHHHhh---------hcHHHHHHHHHHHhhhhh
Q 009536 126 EGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQ--IDTIPLILGAIISAQA---------HSLDEMLWGRFLVGLGIG 192 (532)
Q Consensus 126 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~l~--~~~~~~~~~~~~~~~a---------~~~~~l~~~r~l~G~~~g 192 (532)
.-+....|.++-.+|..+..+.. .-++| ++++ +.-+++.-..++|..- ++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34566777777778777554431 11222 3332 2233344444444322 456667788999999999
Q ss_pred hhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhc
Q 009536 193 VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233 (532)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 233 (532)
-....+..+..+..+++||..+..+...+..+|..+|..++
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888775
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.017 Score=51.79 Aligned_cols=138 Identities=13% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhc
Q 009536 126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205 (532)
Q Consensus 126 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 205 (532)
.|.+.-+-.+...+..+......||+---.=..+..++.+.+.++.+++++.++=+.+-.+..++.|.....-.++- ..
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ls-s~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALS-SR 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhh-cc
Confidence 35555555666667777778888886543334555667778888889999999999998888888887666655543 33
Q ss_pred CCcccccchhhHhHHHHHHHHHHHHHhcCCCCC--CcchhHHHHHhhHHHHHHHHHHhcccccChh
Q 009536 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAED--DPHWWRTMLYIASLPGFILALGMQFTVESPR 269 (532)
Q Consensus 206 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~ 269 (532)
+++. ..+-+..|.+.+.++|..--..+.+ ... -|.+.++...+-++.+...+++.++|+
T Consensus 143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~s-pk~Tlli~l~lP~lfa~~yf~lL~~pe 203 (409)
T KOG3880|consen 143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLS-PKSTLLIMLFLPALFAFAYFFLLKSPE 203 (409)
T ss_pred CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence 3332 4444555555555666544444443 122 677777777776666666666555543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.3 Score=34.98 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=54.3
Q ss_pred hHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHH
Q 009536 344 GVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVG 408 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 408 (532)
.+...+|.+.++.+.+ +.++......++.++|.+...++.++.++++.+..+.+...+..+.+.+
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888877666 6688889999999999999999999988888888888888888888777
|
Note that many members are hypothetical proteins. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.78 Score=43.04 Aligned_cols=140 Identities=19% Similarity=0.118 Sum_probs=65.3
Q ss_pred HHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhh-----hcCCchhhhh-hHHHHHHHHHHH
Q 009536 335 LLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMD-----KEGRQKLLIG-SYLGMAISMLLV 406 (532)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~-~~~~~~~~~~~~ 406 (532)
...+...+.... -.|.+++..+.+ +.+.....+ .-..--++...+.| |+|||+..++ ...+.+..+.++
T Consensus 40 YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL 116 (510)
T KOG3574|consen 40 YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL 116 (510)
T ss_pred HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence 334444444443 778888755544 222222211 11122346667777 8999986543 333333334444
Q ss_pred HHHhcCCCC-ccchhhHHHHHHHHHHHHHhcccc-cccccccccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 009536 407 VGATSLPLD-EDFSHNLSILGTLFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFF 477 (532)
Q Consensus 407 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 477 (532)
.....-... ....+...+....++..-+..+.. .....+.-.+..+++.|-+........+.|.+++-.++
T Consensus 117 s~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 117 SYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 332222221 122222332222222233322222 22334444555666677777666666666666665544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.9 Score=44.00 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhcCCCCc--------------c-chhhHHHHHHHHH
Q 009536 367 LVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATSLPLDE--------------D-FSHNLSILGTLFY 430 (532)
Q Consensus 367 ~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~ 430 (532)
..........+++++++|. +||.+.+.++.++..++..++......+... . ......++...+.
T Consensus 81 ~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~ 160 (571)
T KOG1237|consen 81 AFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALY 160 (571)
T ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHH
Confidence 3344445566788999997 5888888888888888876665543222110 0 0001112222222
Q ss_pred HHHHhc-ccccccccccccccC----cccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHh
Q 009536 431 IFTFAI-GAGPVTGLVIPELSS----NRTR--GKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 431 ~~~~~~-~~~~~~~~~~~~~~~----~~~~--~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 503 (532)
....+. +.-|.....-+|.++ .+.+ ..-+.......+.|..++-.+..++.+..||...|.+..++.+++.++
T Consensus 161 lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 161 LIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred HheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence 222222 223666677777776 2222 366777777888899999888888888999999888888777776665
Q ss_pred hh
Q 009536 504 AY 505 (532)
Q Consensus 504 ~~ 505 (532)
.+
T Consensus 241 F~ 242 (571)
T KOG1237|consen 241 FL 242 (571)
T ss_pred HH
Confidence 44
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.028 Score=52.59 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHhhhccccc-cchhHHHHH--hhHHHHHHHHHHH----------hhhcHHHHHHHHHHHhhhhhhhh
Q 009536 129 VVSIFIAGAFVGSISSGSLADK-LGCRRTFQI--DTIPLILGAIISA----------QAHSLDEMLWGRFLVGLGIGVNT 195 (532)
Q Consensus 129 ~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~--~~~~~~~~~~~~~----------~a~~~~~l~~~r~l~G~~~g~~~ 195 (532)
...+|.++-.+|..+.++.-=+ -.+|++++. .-+++.-..++|- +.+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4567788888888877653211 134444433 2233333333331 22455667888999999999999
Q ss_pred hhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCC
Q 009536 196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP 235 (532)
Q Consensus 196 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 235 (532)
..+..+..+..++++|..+-.+......+|..+|..++-.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888888877643
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.088 Score=50.32 Aligned_cols=131 Identities=10% Similarity=-0.078 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcC
Q 009536 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206 (532)
Q Consensus 127 ~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 206 (532)
.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.++.++.+....-|-..|+-.+....+.+..++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 46677788888899999999999999888888888878888888888888888888888888666655555555444332
Q ss_pred Cc-----------------------ccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHH
Q 009536 207 PT-----------------------KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL 257 (532)
Q Consensus 207 ~~-----------------------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 257 (532)
-. ..+|...|+.+....+..++..+..|.+.+..|+=+.+-.+.+..++..
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~ 488 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLI 488 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHH
Confidence 11 2246677778888888888877777777776665555555544444443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.47 Score=44.19 Aligned_cols=165 Identities=10% Similarity=-0.050 Sum_probs=90.8
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
.+.+.+++++.....-+..........+++-+ +-...+.-...-.....+..++.|...|+..|+|++...+.+.-++.
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gn-sl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGN-SLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCc-eehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 45566777777777777766666666666541 22222333333344556777888999999999999988777654443
Q ss_pred HHHH------hh------hcHHHHHHHHHHHhhhhhhhh--hhhhH--hhhhcC----Ccccc---cchhhHhHHHHHHH
Q 009536 169 IISA------QA------HSLDEMLWGRFLVGLGIGVNT--VLVPI--YISEVA----PTKYR---GSLGTLCQVGTCLG 225 (532)
Q Consensus 169 ~~~~------~a------~~~~~l~~~r~l~G~~~g~~~--~~~~~--~i~~~~----~~~~r---~~~~~~~~~~~~~g 225 (532)
.+++ +. .+++.+..+-++.-.-.+... ..+.+ +-.||. ..+.+ .+..+..-..-..-
T Consensus 108 ~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~t 187 (503)
T KOG2601|consen 108 IVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQST 187 (503)
T ss_pred HHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhh
Confidence 3333 21 355555555444332222111 11111 112332 12223 23335555556667
Q ss_pred HHHHHHhcCCCCCCcchhHHHHHhhHHHHH
Q 009536 226 IITSLFLGIPAEDDPHWWRTMLYIASLPGF 255 (532)
Q Consensus 226 ~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 255 (532)
.++.|.+.|.+....+ -|..-.+.++..+
T Consensus 188 n~Lapv~tg~Iitfvs-l~~~~g~f~~w~~ 216 (503)
T KOG2601|consen 188 NLLAPVITGLIITFVS-LRASAGTFAAWAL 216 (503)
T ss_pred hchhhhhhcccceeec-hhhhhhhhHHHHH
Confidence 7888999888887666 5554444444333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.37 E-value=6.1 Score=37.88 Aligned_cols=28 Identities=11% Similarity=-0.049 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhcchhhHHHhHHHHHHHc
Q 009536 329 IGGALFLLQQFAGINGVLYFSSLTFQDV 356 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (532)
+..++.........+.+..-.+++.++.
T Consensus 21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~ 48 (406)
T KOG1479|consen 21 LIFLLLGIGTLLPWNMFITASDYYYYRF 48 (406)
T ss_pred HHHHHHhcccccchHhhhccHHHHHhhc
Confidence 3333333333334444444455555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.55 E-value=2.6 Score=41.95 Aligned_cols=110 Identities=9% Similarity=-0.090 Sum_probs=68.0
Q ss_pred HHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCC---ccch--------------------hhHHHHHHH
Q 009536 372 NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLD---EDFS--------------------HNLSILGTL 428 (532)
Q Consensus 372 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------~~~~~~~~~ 428 (532)
.++...+..++++++++.++.-+........+.++++.. +|.. ++.. ..|......
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 344456678999999999887665555555555544432 1110 0000 001111111
Q ss_pred HHHHHHhccccc-ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 429 FYIFTFAIGAGP-VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 429 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
+..=.++....+ ..+..++|.+..++..+-+++.....++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 457788999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.6 Score=39.73 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccchhH------HHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhh
Q 009536 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRR------TFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTV 196 (532)
Q Consensus 123 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~------~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 196 (532)
+.|.-|....|.+|-.+ .+=+-|+=+-+ ++-.-.+++.+...+..+.++++..++.-+.-|+-.|..++
T Consensus 287 ~sqYRwyqvlYQlGVFi-----SRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV 361 (409)
T KOG3880|consen 287 DSQYRWYQVLYQLGVFI-----SRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV 361 (409)
T ss_pred hhcchhhheeeeeeEEE-----EeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence 44678988888886433 22222222222 12222334445555666789999999999999999999999
Q ss_pred hhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC
Q 009536 197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE 237 (532)
Q Consensus 197 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 237 (532)
...--+.+-.++++|-.+++...++.++|..++.+++-.+-
T Consensus 362 NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 362 NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 88888888888899999999999999999999998876553
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.79 E-value=7.4 Score=34.84 Aligned_cols=134 Identities=19% Similarity=0.181 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchh--HHHHHhhHHHHHHHHHHHh----hh---cHHHHHHHHHHHhhhhhhhhh
Q 009536 126 EGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIPLILGAIISAQ----AH---SLDEMLWGRFLVGLGIGVNTV 196 (532)
Q Consensus 126 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----a~---~~~~l~~~r~l~G~~~g~~~~ 196 (532)
-|.+.+.|+++.++|+-+..++..|-.+| ..+.+..++.++...+..+ ++ +...=+++-++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48999999999999999998888876554 3444444444443333322 22 222234555556677889999
Q ss_pred hhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHH
Q 009536 197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260 (532)
Q Consensus 197 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 260 (532)
....+-+++.|+++|...+.++..-.++=..++-..- -..+....-|..|-++.....+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999998887654444333321110 01111111567777777666655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.48 E-value=25 Score=34.76 Aligned_cols=112 Identities=10% Similarity=-0.117 Sum_probs=70.1
Q ss_pred HHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhc-----CCCCcc--------ch-h---------hHHHHHH
Q 009536 371 TNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATS-----LPLDED--------FS-H---------NLSILGT 427 (532)
Q Consensus 371 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~-~---------~~~~~~~ 427 (532)
+.++..++..++.+++.+.++...........++++++... .+.+.. .+ . .|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 45666778889999999988877666666655555555422 111100 00 0 0111222
Q ss_pred HHHHHHHhcccc-cccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 428 LFYIFTFAIGAG-PVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 428 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
.+..=.++.... -+.+..++|....++..+-+++.+...+++..++..+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222 2455678899999999999999999999999999988887765
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=85.11 E-value=25 Score=30.61 Aligned_cols=38 Identities=16% Similarity=-0.014 Sum_probs=19.5
Q ss_pred hcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 204 EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 204 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
++..++++.+.-.......-++.++|..+++.+.+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~ 190 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG 190 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333433333344445555566666666666655544
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.95 E-value=0.078 Score=46.36 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=44.6
Q ss_pred HHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhcc---------ccccchhHHH
Q 009536 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL---------ADKLGCRRTF 157 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l---------~dr~Grr~~l 157 (532)
+.-.++.+++..+.+..-..+-.+.++.++ ++....+++-+-...-++..++.|.. .||+|||+..
T Consensus 20 f~yGvGHmlNDitAScWFTYlllfltqigl--sp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 20 FAYGVGHMLNDITASCWFTYLLLFLTQIGL--SPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred eeechhHHHhhHHHHHHHHHHHHHHHHhcC--CcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 334455666666666665556666677777 66666677777777777888887754 4689998754
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.70 E-value=21 Score=31.59 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHH
Q 009536 369 GVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 402 (532)
Q Consensus 369 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 402 (532)
.+|..+..+.+-.++.|+..|++.+.+.+++.+.
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 4555555555667888999888887776655444
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.33 E-value=21 Score=33.39 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=63.8
Q ss_pred chhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH-----HHHHHhh----hcHH
Q 009536 108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG-----AIISAQA----HSLD 178 (532)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~-----~~~~~~a----~~~~ 178 (532)
..+..+...+.- ..-.|.+.+.+.|..+..+|+...-++.|.--.-+.+..=+++..++ .+-..|+ ++-+
T Consensus 28 lal~tLatyLlG-~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~ 106 (508)
T COG4262 28 LALGTLATYLLG-GGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRL 106 (508)
T ss_pred HHHHHHHHHhcC-CceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHH
Confidence 344455555542 26678899999999999999999988888644433332222222211 1111233 3566
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhhhh
Q 009536 179 EMLWGRFLVGLGIGVNTVLVPIYISE 204 (532)
Q Consensus 179 ~l~~~r~l~G~~~g~~~~~~~~~i~~ 204 (532)
.+++.-++.|.-.|...|..+.++..
T Consensus 107 Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 107 VLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 78888899999999999999988876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 532 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-39 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 60/423 (14%), Positives = 122/423 (28%), Gaps = 58/423 (13%)
Query: 111 VSIAK----ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT----I 162
++A E GF + G +S GS++D+ R
Sbjct: 47 FALAMPYLVEQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104
Query: 163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
++ + S+ M FL G G+ + K RG + ++
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164
Query: 223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
+G I L + W LY+ + ++AL +
Sbjct: 165 NVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQ--------SCG 215
Query: 282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAG 341
+ + E+ +++ + +L P+ + +I A
Sbjct: 216 LPPIEEYKNDYPDDYNEK----AEQELTAKQIFMQYVL--PNKLLWYIAIANVF------ 263
Query: 342 INGVLYFSS-------LTFQDVGITDGALASLLVGVTNFAGALCASYLMDK--EGRQKLL 392
+ + Y + + + A L G L ++ DK G +
Sbjct: 264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323
Query: 393 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSS 451
++ + +V + N ++ + F I G + GL EL+
Sbjct: 324 GVFFMTLVTIATIVYWMN-------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP 376
Query: 452 NRTRGKIMGF-----SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 506
+ G GF + +VG V+ FG + G S+L+ +
Sbjct: 377 KKAAGTAAGFTGLFGYLGGSVAASAIVGY----TVDFFGWDGGFMVMIGGSILAVILLIV 432
Query: 507 FIV 509
++
Sbjct: 433 VMI 435
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 54/323 (16%), Positives = 103/323 (31%), Gaps = 19/323 (5%)
Query: 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT 156
FL+ +N ++ ++ F GL+ S F G F+ I +G L KL +
Sbjct: 36 FLWAV-ANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93
Query: 157 FQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRG 212
LGA + +A+ + L G F++ G+G T P +++ + P
Sbjct: 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP-FVTVLGPESSGH 152
Query: 213 SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLC 272
L Q G I ++ G ++ + + L+ V S +
Sbjct: 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY 212
Query: 273 KG-GMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGG 331
+ A++ L + + S L H R A +
Sbjct: 213 MIIVAIVLLVALLIMLTKFPALQSDNHS-----DAKQGSFSASLSRLARIRHWRWAVLAQ 267
Query: 332 ALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFA---GALCASYLMDKEGR 388
++ Q A + Y +++ A+ + T G ++L+ +
Sbjct: 268 FCYVGAQTACWS---YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324
Query: 389 QKLLIGSYLGMAISMLLVVGATS 411
K+L L L+ A
Sbjct: 325 HKVLAAYALIAMALCLISAFAGG 347
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 50/440 (11%), Positives = 125/440 (28%), Gaps = 56/440 (12%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPIVSI--AKELGFEGNPILEGLVVSIFIAGAFVGSISS 144
+ + + F + + +G P I + G++ + + +
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLF 63
Query: 145 GSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV-----NTVLVP 199
G L+DKLG R+ +++ + + + + G+ P
Sbjct: 64 GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 200 I--YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL 257
E + G G + + +GI + + + ++ S IL
Sbjct: 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF---VFWLGSGCALIL 180
Query: 258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE 317
A+ + F + A +AN G + +++ + ++
Sbjct: 181 AVLLFFAKTDA----------PSSATVANAVGANHSAFSLKLALELFRQ----------- 219
Query: 318 LLEEPHSRVAFIGGALFLLQQFAGINGVLY-FSSLTFQDVGITDGALASLLVGVTNFAGA 376
+ + + + F + F + + + A
Sbjct: 220 -----PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT-RVFGYVTTMGELLNA 273
Query: 377 LC---ASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFT 433
A ++++ G + L+ + M++ ++ ATS ++ ++F
Sbjct: 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL--------EVVILKTLHMFE 325
Query: 434 FAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHW-VCNFLVGLFFLDLVETFGVAPVYAG 492
I R I F + + + ++ E+ G Y
Sbjct: 326 VPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384
Query: 493 FGGVSLLSALFAYYFIVETK 512
G V+L L + + +
Sbjct: 385 LGLVALGFTLISVFTLSGPG 404
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 9e-06
Identities = 54/388 (13%), Positives = 96/388 (24%), Gaps = 119/388 (30%)
Query: 2 RVATVLHHPVRPVPSY---RSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSR 58
+ T P Y R L+ + F+ + S L ++ L ELR
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 59 KQ----------KQDGENLLSRDQKAEEGFDLG--WLPAF-----PHVLIASMSNFLFGY 101
K K + K + D WL P ++ + L Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLL--Y 207
Query: 102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161
I + N L S+ +L RR +
Sbjct: 208 QIDPNWTSRSDHSS------NIKLR-----------------IHSIQAEL--RRLLKSKP 242
Query: 162 IPLILGAIISAQAHSLDEM----LWGRFLVG---L----GIGVNTVLVPIYISEVAPTKY 210
L ++ L + W F + L V L + ++ +
Sbjct: 243 YENCL--LV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 211 RGSLG---TLCQVGTCLGIITS-----------LFLGIPAE---DDP-HW--WRTMLY-- 248
+L + L L I AE D W W+ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 249 --------IASL-PGFILALGMQFTVESPRWLCKGGMLNDAK---AVIANLWGESEINKA 296
+ L P + + +V A +++ +W + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIPTILLSLIWFDVIKSDV 404
Query: 297 IEEFQLVIKKDGSDLDSQWSELLEEPHS 324
+ + K S ++ Q E S
Sbjct: 405 MVVVNKLHKY--SLVEKQPKESTISIPS 430
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171
+A++L V+ ++ V + G ++D++G R + +L +++
Sbjct: 25 DMARDLN--VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82
Query: 172 AQAHSLDEMLWGRFLVGLGIGVNTVL 197
SL ++ + G+G GV V+
Sbjct: 83 VTTSSLTVLIAASAMQGMGTGVGGVM 108
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.35 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.31 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.25 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.21 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-46 Score=371.39 Aligned_cols=437 Identities=28% Similarity=0.490 Sum_probs=343.5
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCC------ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~ 158 (532)
-+.+.++.+++.++.+++.+.++.++|.+.++++.+. +..+.|++.+++.+|..+|++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3455666778889999999999999999999885421 2456789999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHH------------------hhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHH
Q 009536 159 IDTIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV 220 (532)
Q Consensus 159 ~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 220 (532)
++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++|+.|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-------cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcch
Q 009536 221 GTCLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293 (532)
Q Consensus 221 ~~~~g~~~g~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (532)
+..+|.++++.++..+... ..+||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++..+.+..
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 9999999988877544321 123999999999999999999999999999999999999999988877654443
Q ss_pred HHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHH
Q 009536 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVT 371 (532)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 371 (532)
.++..+......+.++. ......+ ..+...+......+..+.......+|.+.+.+..+... ........++.
T Consensus 250 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGRKT--GGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHHHH--TTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 33332222221111111 1111111 22334444555556667777888888888888777663 34556667888
Q ss_pred HHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC
Q 009536 372 NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS 451 (532)
Q Consensus 372 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (532)
.+++.++.+++.||+|||+.++.+.....++++.+....... ......+...+++..++..+..++.+.+.+|++|
T Consensus 325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 999999999999999999999988888888777766543321 2334445555566667777778888899999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHHHHhcC
Q 009536 452 NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNA 525 (532)
Q Consensus 452 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (532)
++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++++||+|+|+++|+|+.+|+
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999988876543 3456778889999999999988899999999999999998877
Q ss_pred CCCCC
Q 009536 526 NSTPG 530 (532)
Q Consensus 526 ~~~~~ 530 (532)
+++++
T Consensus 481 ~~~~~ 485 (491)
T 4gc0_A 481 ETKKT 485 (491)
T ss_dssp -----
T ss_pred CCccc
Confidence 65544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=308.92 Aligned_cols=371 Identities=15% Similarity=0.109 Sum_probs=287.4
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
+++..+..+++..+..+++.....+.+|.+.+++|+ +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 345567777788888899989999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC-CC
Q 009536 164 LILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DD 239 (532)
Q Consensus 164 ~~~~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~ 239 (532)
.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred cch------------------------hHHHHHhhHHHHHHHHHHhcc--cccChhHHhhcCChhHHHHHHHHHcCCcch
Q 009536 240 PHW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEI 293 (532)
Q Consensus 240 ~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (532)
.+. ||+.|++.+++.++..+..++ .||+++. +++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~----------------- 240 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS----------------- 240 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-----------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-----------------
Confidence 544 999998877776665544433 3443320 000
Q ss_pred HHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHH-HHHc-CCC--hhHHHHHHHH
Q 009536 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQDV-GIT--DGALASLLVG 369 (532)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~~~ 369 (532)
+++++..+..++++++++..+...+...+. .........+.+.+ +++. +.+ +.+.......
T Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 241 -----------DAKQGSFSASLSRLARIRHWRWAVLAQFCY----VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp -----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred -----------cccccchhhhHHHHHhChHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 001112224556677777655544443333 22344555666777 6665 655 4577777888
Q ss_pred HHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccc
Q 009536 370 VTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPEL 449 (532)
Q Consensus 370 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (532)
++.+++.++.|++.||+++|+.+..+..+.+++.+++.+. .......... +.........+....+..|.
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALT-LCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHH-HHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998888887777666551 2222222222 22222333456777887888
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHHh
Q 009536 450 SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 503 (532)
+|++ ++.+.++.. ...+|+.++|.+.|.+.|..| +...|.+.+++.++..++
T Consensus 376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8876 888888877 677999999999999999999 888888766555554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=318.34 Aligned_cols=396 Identities=14% Similarity=0.101 Sum_probs=293.0
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+++.+..++++.+...++...+.+.+|.+.+++ . +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3566788888888999999999999999999999 8 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 164 LILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 164 ~~~~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cchhHHHHHhhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 240 PHWWRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
.++||+.|++.+++.++..+ ..++++|+|+....+...+.. ...+. +.+...++.........++.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPD---DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC----------------CCTHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccc---cchhhhhcccccccchHHHH
Confidence 43399999998888776544 445677776542211111000 00000 00000000111111113455
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc--CCchhhh
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKE--GRQKLLI 393 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~ 393 (532)
++++..+...+ ..+...........+.|.++++ .+.+ +.+.......++.+++.++.|++.||+ ++|+.+.
T Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 249 LPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp SSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 55554443333 2233333455566777877776 4665 346777888899999999999999999 9998877
Q ss_pred hhHHHHH-HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHH-HH
Q 009536 394 GSYLGMA-ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CN 470 (532)
Q Consensus 394 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~ 470 (532)
.+..+.. ++++++... ............+..+++ .+..+....+..|.+|++.|+++.|+.+.+.++ |.
T Consensus 325 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN--------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHTTSC--------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 7666555 443333221 011222222222333333 223455667889999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 471 FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 471 ~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888887777665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=279.06 Aligned_cols=417 Identities=13% Similarity=0.071 Sum_probs=261.3
Q ss_pred HHHHHHHhhhhhhccccccchh-HHHHHh-----hCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhh
Q 009536 89 VLIASMSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDT 161 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~ 161 (532)
++.+++..+...+......+.+ +.+.++ +|. +..+.+++.+++.++..++++++|+++|| +|||+++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3444444455554444443334 344454 888 99999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCccc--ccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988 77788889999999999999999999887
Q ss_pred cchhHHHHHhhHHHHHHHHHHhccc-ccChh----HHhhcCChhHHHHHHHH----------------HcCCcchHHHHH
Q 009536 240 PHWWRTMLYIASLPGFILALGMQFT-VESPR----WLCKGGMLNDAKAVIAN----------------LWGESEINKAIE 298 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~-~~~p~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 298 (532)
.+ ||+.|++.++..++..+..++. ++..+ ....+.+.++..+..+. ..+..+.+....
T Consensus 173 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 173 AG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 77 9999999877776655544432 21110 00011112222221111 001100000000
Q ss_pred HH--------HHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CC--ChhHHHHHH
Q 009536 299 EF--------QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GI--TDGALASLL 367 (532)
Q Consensus 299 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ 367 (532)
.. ........+....... .+++... .....+.....+........+.+.+.++. +. ...+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTST--EHLRVVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSL 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHH--HHHHHHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhcc
Confidence 00 0000000000000000 1111111 11111111222222333444555555543 32 245677777
Q ss_pred HHHHHHHHhhhhHhhhhhcCCchhhh-----hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccc
Q 009536 368 VGVTNFAGALCASYLMDKEGRQKLLI-----GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 442 (532)
Q Consensus 368 ~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (532)
..++.+++.++.+++.||++||+... .+..+.+++++++......................++.........+..
T Consensus 328 ~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 328 NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888889999999999999987654 5666666665555442211000001122222222222222222335667
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 443 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
..++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...|.+.+++.+++.++.+++.++.++
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999887665 467778888888877777766666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=276.34 Aligned_cols=355 Identities=14% Similarity=0.088 Sum_probs=263.8
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
++++++..+...+....+.+.+|.+.+++|. +..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3556777788888999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009536 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (532)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~ 248 (532)
++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988777 999999
Q ss_pred hhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHH
Q 009536 249 IASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (532)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (532)
+.++..++..+ ..+++||++++. +++++....+++.+++|..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 204 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVD----------------------------------APRTRLLTSYKTLFGNSGFNCY 204 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTT----------------------------------CCCCCTTTCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCC----------------------------------cccccHHHHHHHHhcCcchHHH
Confidence 98888877766 445566664310 0111122345566666655444
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHH-cCC--ChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH-HHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQD-VGI--TDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG-MAISM 403 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~ 403 (532)
.+...+.. ........+.|.++++ .+. ...+.......++.+++.++.+++.||++++ ...+... ..++.
T Consensus 205 ~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~ 278 (375)
T 2gfp_A 205 LLMLIGGL----AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL 278 (375)
T ss_dssp HHHHHHHH----HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 43333322 2333344444444443 333 3456777778888999999999999998872 2222222 22222
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
..+..... .....+.........+++.+ ..+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+
T Consensus 279 ~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 279 LMWIPDWF------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp SSSHHHHH------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHhhh------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111000 01122222222222222222 35667788889988 789999999999999999999999999988
Q ss_pred hhCcchhhHhH
Q 009536 483 TFGVAPVYAGF 493 (532)
Q Consensus 483 ~~g~~~~~~~~ 493 (532)
..++...+.+.
T Consensus 352 ~~~~~~~~~~~ 362 (375)
T 2gfp_A 352 TGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred CCcccHHHHHH
Confidence 87777666553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=257.30 Aligned_cols=417 Identities=12% Similarity=0.028 Sum_probs=234.9
Q ss_pred HHHhhhhhhccccccchhH-HHHHhhC------CCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHH
Q 009536 93 SMSNFLFGYHIGVMNGPIV-SIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPL 164 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~ 164 (532)
.+..+...+......+.++ .+.+++| . +..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344444444444444444 5677888 7 888999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhh-cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhH---hHHHHHHHHHHHHHhcCCCCCCc
Q 009536 165 ILGAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDDP 240 (532)
Q Consensus 165 ~~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~ 240 (532)
+++.+++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 999999999999999999999999999999999999877666 88999999999999999998877
Q ss_pred chhHHHHHhhHHHHHHHHHHhcccccChhHH-hhcCChhHHHHHH-HHHcCCcchHHH---HHHH---------------
Q 009536 241 HWWRTMLYIASLPGFILALGMQFTVESPRWL-CKGGMLNDAKAVI-ANLWGESEINKA---IEEF--------------- 300 (532)
Q Consensus 241 ~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~--------------- 300 (532)
+ ||+.|++.++..++..+..++..+..+.. .++.+..+..+.. ...+......+. ....
T Consensus 176 g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (524)
T 2xut_A 176 G-AAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPT 254 (524)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTT
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccch
Confidence 7 99999998887776555543322111000 0000000000000 000000000000 0000
Q ss_pred ------------HHHHHhccCCCcchhhhh-----------hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcC
Q 009536 301 ------------QLVIKKDGSDLDSQWSEL-----------LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG 357 (532)
Q Consensus 301 ------------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (532)
...+++. +..++++ .++++...............+........+.+.+..+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (524)
T 2xut_A 255 LGIVAGLCCAMVLVMGFVG----AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV 330 (524)
T ss_dssp TCSSHHHHHHHHHHHHHHH----TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSC
T ss_pred hhhhhhhhhhhhhhhcccc----cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcC
Confidence 0000000 0011000 011111111111111111111111111222233333333
Q ss_pred CC---hhHHHHHHHHHHHHHHhhhhHhhh----hhcCC----chhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 009536 358 IT---DGALASLLVGVTNFAGALCASYLM----DKEGR----QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILG 426 (532)
Q Consensus 358 ~~---~~~~~~~~~~~~~~~~~~~~g~l~----d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
.. ..+.......++.+++..+.+++. +|.++ ++.+..+..+.+++++++.................+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (524)
T 2xut_A 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQIL 410 (524)
T ss_dssp CCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHH
T ss_pred CCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence 32 234444444445555555555553 44332 23445555555555544433110000000111222222
Q ss_pred HHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------Cc-chhhHhHHH
Q 009536 427 TLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF----------GV-APVYAGFGG 495 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~----------g~-~~~~~~~~~ 495 (532)
..++.........+....+..|..|++.||+++|+.+...++|+.++|.+.+.+.+.. +. ...|++.++
T Consensus 411 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (524)
T 2xut_A 411 PYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAG 490 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Confidence 2222222222345667788899999999999999999999999999999999887632 21 223666777
Q ss_pred HHHHHHHhhheeeccCCCCCH
Q 009536 496 VSLLSALFAYYFIVETKGRSL 516 (532)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~ 516 (532)
+.+++.++.+++.++.++++.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 491 FAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhccchh
Confidence 777776666666665554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-31 Score=260.37 Aligned_cols=384 Identities=12% Similarity=0.006 Sum_probs=241.9
Q ss_pred HHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
...+....+..........+.+|. +++++|. +..+.|++.+.+.++..++++++|+++||+|||++++++..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 333444445555555566677776 4566898 8889999999999999999999999999999999999988877553
Q ss_pred HH---HHHhhhcH-HHHHHHHHHHhhhhhhhhhhhhHhhhhcCCc--ccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 168 AI---ISAQAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 168 ~~---~~~~a~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
.. .+.+++.. ..++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~ 165 (417)
T 2cfq_A 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN 165 (417)
T ss_dssp HHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 22 22233222 1245567777777666655555555555543 356777788877888899999999888765 34
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcC
Q 009536 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
||+.|++.++..++..+..++.+|+++. +.+.++ .. .++.++.....+++++++
T Consensus 166 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~-----------~~~~~~~~~~~~~~~~~~ 219 (417)
T 2cfq_A 166 -NQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN-----------AV-----------GANHSAFSLKLALELFRQ 219 (417)
T ss_dssp -SHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS-----------SS-----------SSCCCCCCHHHHHHHTTC
T ss_pred -hhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc-----------cc-----------ccccccccHHHHHHHhcC
Confidence 9999998877766555555555544321 000000 00 000001111234456666
Q ss_pred CcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-C-----CChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhh
Q 009536 322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-G-----ITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGS 395 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 395 (532)
+..+...+....... .+.....+.|.++.+. + ....+.......++.+++.++.++++||+|||+.+..+
T Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 554443332222111 1112222244444432 2 11224555566677888999999999999999988877
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHH-HHHHHHHHHHHH
Q 009536 396 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLVG 474 (532)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~i~~ 474 (532)
..+.+++.+++.+. .+....+....+...+. ....+....+.+|.+|++.|+++.++. +...++|++++|
T Consensus 296 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp 366 (417)
T 2cfq_A 296 GTIMSVRIIGSSFA--------TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366 (417)
T ss_dssp HHHHHHHHHHHTTC--------CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 77666654444320 11111111111111111 112233457889999999999999994 888889999999
Q ss_pred HHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCC
Q 009536 475 LFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 514 (532)
Q Consensus 475 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (532)
.+.|.+.+..|+...|.+.+++.+++.++.+...+++++.
T Consensus 367 ~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 9999999988888888888888888777666666655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=140.98 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=145.9
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHh-hCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc--chhHHHHHhhHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI 165 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~ 165 (532)
++.+.+..++..+........+|.+.++ +|. +..+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4444555555555555566677777666 788 889999999999999999999999999999 99999988887776
Q ss_pred -HHHHHHHhh--hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH-HHHHHHHhcCCCCCCcc
Q 009536 166 -LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH 241 (532)
Q Consensus 166 -~~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~ 241 (532)
++.++..+. .+.+.+.++.++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666665 47888888899999999989999899999999999999999999999999 99999999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc
Q 009536 242 WWRTMLYIASLPGFILALGMQFTV 265 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
|+..|++.+++.++..+..++++
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877766655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-12 Score=124.16 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=121.2
Q ss_pred HHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHH
Q 009536 330 GGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVV 407 (532)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 407 (532)
......+.............|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+.+++.++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333333333444456666777777888776 457888888999999999999999999999999999999998888773
Q ss_pred HHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH-HhhC
Q 009536 408 GATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV-ETFG 485 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~-~~~g 485 (532)
.... ..+. ..+.+..+..+.+.+ ..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 110 ~~~~------~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 110 PAAE------IMNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHH------TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred hccc------cccH-HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3111 1222 222233333333333 34667788999999999999999999999999999999999988 4444
Q ss_pred -------------------------cchhhHhHHHHHHHHHHhh
Q 009536 486 -------------------------VAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 486 -------------------------~~~~~~~~~~~~~~~~~~~ 504 (532)
|+..|++.+++.++..++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6778876666655554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=121.34 Aligned_cols=163 Identities=12% Similarity=-0.004 Sum_probs=125.1
Q ss_pred chhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
.........|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+..++.+++...
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 4444555566666677765 45777888899999999999999999999999999999988888877762
Q ss_pred hhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHH
Q 009536 419 SHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
++. ..+....+..+.+.+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.
T Consensus 86 ~~~-~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 86 SSL-TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 222 222223333333333 456677888999999999999999999999999999999999998889999999888887
Q ss_pred HHHHHhhheeeccCCC
Q 009536 498 LLSALFAYYFIVETKG 513 (532)
Q Consensus 498 ~~~~~~~~~~~~~~~~ 513 (532)
++..+...+..||+++
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 165 AGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHCcccCC
Confidence 7777655566666543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=124.60 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhh
Q 009536 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI 202 (532)
Q Consensus 123 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i 202 (532)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888777777788899
Q ss_pred hhcCCcccccchhhH-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccC
Q 009536 203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (532)
Q Consensus 203 ~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~ 267 (532)
.|.+|++.|+.+.++ ++....+|..++|.+++++.+..+ ++..|.+.+++.++..+..++ .+|+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999998 488889999999999999887767 889999888887776655444 4544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=120.83 Aligned_cols=157 Identities=11% Similarity=0.102 Sum_probs=116.1
Q ss_pred chhhHHHhHHHHHHH------cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhc
Q 009536 341 GINGVLYFSSLTFQD------VGIT--DGALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATS 411 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
.+.....+.+.++++ .+.+ +.++......++..++.++.|+++|| +|||+++..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--
Confidence 333444445555544 5665 45788888899999999999999999 899999999998888888777651
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 009536 412 LPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRT--RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP 488 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~ 488 (532)
.+...+....+ ..+.+.+ ..+....++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+..||+.
T Consensus 106 -------~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 177 (491)
T 4aps_A 106 -------FGASALFGSII-LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHV 177 (491)
T ss_dssp -------CSTTHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred -------hhHHHHHHHHH-HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 12222222222 2233322 45667788999999988 7788888999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHhhhee
Q 009536 489 VYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~ 507 (532)
.|++.++..+++.++.++.
T Consensus 178 ~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 178 AFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9998877766666554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-11 Score=119.14 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhc-CCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-c
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-G 437 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 437 (532)
+.++......++..++.++.|+++||+ |||+.+..+.++.+++.+++.+.. .+...+.. ..+..+.+. .
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~l~g~~~~~ 125 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--------HSVQGFYT-GLFLIALGSGG 125 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--------SCHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--------ccHHHHHH-HHHHHHHhccc
Confidence 567888888999999999999999999 999999999888888887776621 02222222 222333333 3
Q ss_pred cccccccccccccCccccchhHHH---HHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhe
Q 009536 438 AGPVTGLVIPELSSNRTRGKIMGF---SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 506 (532)
..+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..||+..|.+.+++.++..++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999876666 888999999999999999999899999998888777666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=122.18 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=118.9
Q ss_pred hhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh-
Q 009536 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA- 174 (532)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a- 174 (532)
.+........+....+.+.++.+. +............+...++.++.+++.||+|||+.++.+....+++.+..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 333334444445556777788777 66666777777888889999999999999999999999998888877766543
Q ss_pred ----hcHHHHHHH-HHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc-----hhH
Q 009536 175 ----HSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWR 244 (532)
Q Consensus 175 ----~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-----~wr 244 (532)
++...++.. -+..+++ ....+....+.+|.+|.+.|++++++......+|..+++.+...+.+... ++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred hcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 122222222 2222222 23456777899999999999999999999999998888877665543211 155
Q ss_pred HHHHhhHHHHHHHHHH-hcccccCh
Q 009536 245 TMLYIASLPGFILALG-MQFTVESP 268 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~-~~~~~~~p 268 (532)
+.|++.+.++++..+. ++++||+.
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHheecCCC
Confidence 6777777777776554 46688874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 532 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-21 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-12 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 94.4 bits (233), Expect = 3e-21
Identities = 64/441 (14%), Positives = 129/441 (29%), Gaps = 30/441 (6%)
Query: 88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
+ + + Y + + E GF + G +S GS+
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISIAYGFSKFIMGSV 82
Query: 148 ADKLGCRRTFQIDTIPLILGAII----SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS 203
+D+ R I + S+ M FL G G+ +
Sbjct: 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
Query: 204 EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
K RG + ++ +G L + + W LY+ + ++AL
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202
Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323
+ C + + K + + E + + ++
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL----------------TAKQIFMQYVL 246
Query: 324 SRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV---GITDGALASLLVGVTNFAGALCAS 380
A+ + + G+L +S ++V + + A L G L
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306
Query: 381 YLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGP 440
++ DK R M LV AT + + + + I G
Sbjct: 307 WMSDKVFRGNRGA----TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM 362
Query: 441 VTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVG-LFFLDLVETFGVAPVYAGFGGVSLL 499
+ GL EL+ + G GF+ ++ + V+ FG + G S+L
Sbjct: 363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 422
Query: 500 SALFAYYFIVETKGRSLEEIE 520
+ + ++ K R + ++
Sbjct: 423 AVILLIVVMIGEKRRHEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 65.2 bits (157), Expect = 6e-12
Identities = 45/435 (10%), Positives = 111/435 (25%), Gaps = 30/435 (6%)
Query: 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGS 146
+ + + F + + +G P I + G++ + + + G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65
Query: 147 LADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206
L+DKLG R+ +++ + + + + G+
Sbjct: 66 LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI------------- 112
Query: 207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266
+ + + + + R ++ ++
Sbjct: 113 --------YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164
Query: 267 SPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326
+ +++ G + + +++ + V + EL +P
Sbjct: 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWF 224
Query: 327 AFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGALCASYLMDKE 386
+ V F G + + G G L + +M
Sbjct: 225 LSLYVIGVSCTYD-----VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFA 279
Query: 387 GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVI 446
IG + ++ ++ + + IL TL I
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF--EVPFLLVGCFKYI 337
Query: 447 PELSSNRTRGKIMGFSFSV-HWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 505
R I F + + + ++ E+ G Y G V+L L +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397
Query: 506 YFIVETKGRSLEEIE 520
+ + SL +
Sbjct: 398 FTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.51 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.33 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-39 Score=315.04 Aligned_cols=402 Identities=15% Similarity=0.097 Sum_probs=281.4
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+|.++..++++.+...++...++.+.|.+. |+|+ +..+.|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 3577788888888888888888888888776 5788 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 164 LILGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 164 ~~~~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
.+++.++++++ ++++.++++|++.|++.|...+....++.|++|+++|++++++.+.+..+|.++++.+++.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 178 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178 (447)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence 99999999876 47889999999999999999999999999999999999999999999999999999988877665
Q ss_pred cchhHHHHHhhHHHHHHHHHHhcc-cccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 240 PHWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
.++||+.|++.+++.++..+..++ .+++|+........+.. .+ ..++.....+++....+...+..
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~ 245 (447)
T d1pw4a_ 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------ND---YPDDYNEKAEQELTAKQIFMQYV 245 (447)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC----------------CCTHHHHHHT
T ss_pred hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------hh---cccchhhccccccchhhHHHHHH
Confidence 544999999988887776555544 44444322111111000 00 00000011111112222233444
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhh
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGS 395 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 395 (532)
++++..+.. ....+...........+.+.++.+. +.+ +.+.......++.+++.++.|++.||+++++.....
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (447)
T d1pw4a_ 246 LPNKLLWYI----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321 (447)
T ss_dssp SSCHHHHHH----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCchHHHH----HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence 444433322 2222233334445556666666544 444 456777778889999999999999999988765544
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHHH-HHHH
Q 009536 396 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC-NFLV 473 (532)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g-~~i~ 473 (532)
.....+............ ...........+..+++ .+..+....+..|.+|++.|+++.|+.+.+.+++ ..++
T Consensus 322 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~ 396 (447)
T d1pw4a_ 322 VFFMTLVTIATIVYWMNP-----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396 (447)
T ss_dssp HHHHHHHHHHHHHTTSCC-----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333333321111 11222222233333333 3334566778889999999999999999998875 5668
Q ss_pred HHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeecc
Q 009536 474 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVE 510 (532)
Q Consensus 474 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (532)
|.+.|.+.|..|+...|.+.+++.+++.++.+++.++
T Consensus 397 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 397 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988888777777666555433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-30 Score=252.54 Aligned_cols=389 Identities=12% Similarity=-0.028 Sum_probs=259.1
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 009536 86 FPHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (532)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 164 (532)
.+..+.+.+..+...+..+...+.+|. +.+++|+ +..+.|++.+++.++..++++++|+++||+|||++++++..+.
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 344666777777777888888888886 6778999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHH----HHHHHHHhhhhhhhhhhhhHhhhhcCCc--ccccchhhHhHHHHHHHHHHHHHhcCCCCC
Q 009536 165 ILGAIISAQAHSLDEM----LWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (532)
Q Consensus 165 ~~~~~~~~~a~~~~~l----~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 238 (532)
.++.+++.+..+.... ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 9999888887665543 4556666666665555555554444433 345667778888888999999999988876
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 239 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
..+ |+..+.......+...+..+..+++++.... .+ ...+..+..........
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------------~~~~~~~~~~~~~~~~~ 216 (417)
T d1pv7a_ 164 INN-QFVFWLGSGCALILAVLLFFAKTDAPSSATV---AN-----------------------AVGANHSAFSLKLALEL 216 (417)
T ss_dssp HCH-HHHHHHHHHHHHHHHHHHHSSCCCSCSSSCS---SH-----------------------HHHSCCCCCCHHHHHHH
T ss_pred ccc-cccccchhhHHHHHHHHHHHHhcccccchhh---hh-----------------------hhhhhcccccccccccc
Confidence 553 4444444444445555556666665431100 00 00111111112223333
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCC------hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhh
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGIT------DGALASLLVGVTNFAGALCASYLMDKEGRQKLL 392 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 392 (532)
.+.+..+.............. ........+....... ..+.......++..++..+.+++.||.++|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 292 (417)
T d1pv7a_ 217 FRQPKLWFLSLYVIGVSCTYD----VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp TTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH
T ss_pred cccccccchhhhhHHHHHHHH----hhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch
Confidence 333333333332222222111 1111112221111111 224455566778888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHH-HHHHHHH
Q 009536 393 IGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVCN 470 (532)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~ 470 (532)
..+..+.+++.+.+... .+........ ...+++ ....+....++.|.+|++.|+++.|+.. ....+|.
T Consensus 293 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 362 (417)
T d1pv7a_ 293 LLAGTIMSVRIIGSSFA---------TSALEVVILK-TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362 (417)
T ss_dssp HHHHHHHHHHHHHHHTC---------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHH
T ss_pred hhhHHHHHHhhhccccc---------cccchhhHHH-HHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 98888888777776651 2222222222 222222 2234667788899999999999999864 5667999
Q ss_pred HHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHH
Q 009536 471 FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLE 517 (532)
Q Consensus 471 ~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (532)
.++|.+.|.+.|..|++..|++.+++.++..++..+.+++++..+..
T Consensus 363 ~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 99999999999999999999999988888888777777766655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=4.9e-15 Score=141.68 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=129.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHh
Q 009536 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (532)
Q Consensus 122 ~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~ 201 (532)
+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+...++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccccchhhHh-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcccccC
Q 009536 202 ISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES 267 (532)
Q Consensus 202 i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 267 (532)
+.|.+|+++|+++.++. +....+|..++|.++|++.+..+ |++.|++.+++.++..+...++.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999975 56788999999999999999888 9999999888887766655554433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.3e-12 Score=124.39 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=126.5
Q ss_pred HHHHHHHhhhhhhccccccchhH-HHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
+..+.+..+.............+ .+.+.++. +..+.++..+.+.++..++.++.|++.||++||+..........+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (447)
T d1pw4a_ 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 328 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcchhhhhhhccccccc--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence 33333333333333333333344 44556677 8889999999999999999999999999999876544444333322
Q ss_pred HHHHH---h--hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH-HHHHHHHhcCCCCCCcc
Q 009536 168 AIISA---Q--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH 241 (532)
Q Consensus 168 ~~~~~---~--a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~ 241 (532)
..... . ..+.+..+++-++.|++.+...+....++.|.+|++.|+++.|+.+....+ |.+++|.+.+++.+..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g 408 (447)
T d1pw4a_ 329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 408 (447)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222 2 357788888889999999888999999999999999999999998877666 67788999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhccc
Q 009536 242 WWRTMLYIASLPGFILALGMQFT 264 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|+..|++.+...++..++..++
T Consensus 409 -~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 409 -WDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777776665554443
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