Citrus Sinensis ID: 009537

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--

MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESSDHEKMGTTSDGGGGMGVIAAGSGNPKAGH

cccccccEEEEEEEEEEccEEEEEEEcccccccccccccccccccccccccEEEcccccEEEccccEEEEccccEEEEcccEEEEEEcccccccccccHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEccEEEEEcccEEEEcccccccccEEEEEEEEcHHHHccccccccHHHHccccccccEEEEEEcccccccccccccccccccccccHHHHHcccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccHHHHcccEEEccccccccccc

ccEEEccEEEEEEEEEEccEEEEEEEcHEEccccccccccccccccccccEEEccccHHHHHHccccEcccccEEEEccccEEEEEHHHHHccccccccHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEcccEEEEEccEEEEEccccEcccEEEEEEEEEHHHHHHHHHHcccHHHHHcccccccEEEEEEEccccccccccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEccHHHcHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccEEEEEccccccccc

mpvikgseryncqvlclnrkiimirpklwlandgnyrELRWFTAWKQKDQLEDFLLPHEISEalcqksvpfgygfIQFLDTAVAVEVCEelftpipphadlaLNGVEVFMnasgshhqlRKLDYRIRAFISAThsrggvymysnqqgcdggrlyfdgcscvvvngdmiaqgsqfslRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSlcqpfnlkmslsgplkityhspeeeiafgpgcwlWDYLrrsgasgfllplsggadsssVAAIVGCMCQLVVKEIANGDEQVKADAIRigryangefptesREFAKRIFYTVFmgsenssqETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLtgkrprykldevdmgmtYEELSVYGRLRKifhcgpvsmfknlcyrwgarltpsEVAEKVKHFFKYYSInrhkmtvltpsyhaesyspednrFDLRQFLYnarwpyqfRKIDELVKEldgekvpfsessdhekmgttsdggggmgviaagsgnpkagh

mpvikgserynCQVLClnrkiimirpklwlandGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGryangefptesreFAKRIFYTVfmgsenssqeTRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFqtltgkrprykldevdmGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEkvpfsessdhekmgttsdggggmGVIAAgsgnpkagh

MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRdvevvvaqvdldavaGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESSDHEKmgttsdggggmgviaagsgNPKAGH

********RYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG**************LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKE*****************************************

MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS******QASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL****************GTTSDGGGGMGVIA**********

MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF********KISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS*************LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESSDHEKMGTTSDGGGGMGVIAAGSGNPKAGH

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		532	2.2.26 [Sep-21-2011]
P38795		714	Glutamine-dependent NAD(+	yes	no	0.721	0.537	0.507	1e-115
Q5ZMA6		707	Glutamine-dependent NAD(+	yes	no	0.719	0.541	0.497	1e-112
Q54ML1		713	Glutamine-dependent NAD(+	yes	no	0.919	0.685	0.420	1e-110
O74940		700	Putative glutamine-depend	yes	no	0.710	0.54	0.498	1e-109
Q711T7		725	Glutamine-dependent NAD(+	yes	no	0.716	0.525	0.492	1e-109
Q3ZBF0		706	Glutamine-dependent NAD(+	yes	no	0.755	0.569	0.471	1e-106
Q812E8		725	Glutamine-dependent NAD(+	yes	no	0.755	0.554	0.454	1e-105
Q6IA69		706	Glutamine-dependent NAD(+	yes	no	0.716	0.539	0.476	1e-104
Q4R5Y2		706	Glutamine-dependent NAD(+	N/A	no	0.755	0.569	0.462	1e-104
Q9VYA0		787	Probable glutamine-depend	yes	no	0.716	0.484	0.432	5e-96

>sp\|P38795\|NADE_YEAST Glutamine-dependent NAD(+) synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QNS1 PE=1 SV=1	Back alignment and function desciption

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/388 (50%), Positives = 270/388 (69%), Gaps = 4/388 (1%)

Query: 1   MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEI 60
           MPV+  + RYNC++L L+ +I+ IRPK+WLANDGNYRE+R+FT W +   +EDF+LP EI
Sbjct: 88  MPVLHKNVRYNCRLLSLDGEILFIRPKIWLANDGNYREMRFFTPWMKPGVVEDFILPPEI 147

Query: 61  SEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR 120
            +   Q+ VPFG   I  LDT +  E CEELFTP  PH  ++L+GVE+  N+SGSHH+LR
Sbjct: 148 QKVTGQRLVPFGDAVINSLDTCIGTETCEELFTPQSPHIAMSLDGVEIMTNSSGSHHELR 207

Query: 121 KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVE 180
           KL+ R+   ++AT   GGVY+Y+NQ+GCDG RLY+DGC+ + +NG ++AQGSQFSL DVE
Sbjct: 208 KLNKRLDLILNATKRCGGVYLYANQRGCDGDRLYYDGCALIAINGTIVAQGSQFSLDDVE 267

Query: 181 VVVAQVDLDAVAGFRGSISSFQEQAS---CKTKISSVAVQYSLCQP-FNLKMSLSGPLKI 236
           VV A VDL+ V  +R ++ S   QAS    K K   + V+ +L    F+  +  +   + 
Sbjct: 268 VVTATVDLEEVRSYRAAVMSRGLQASLAEIKFKRIDIPVELALMTSRFDPTVCPTKVREP 327

Query: 237 TYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANG 296
            YHSPEEEIA GP CW+WDYLRR   +GF LPLSGG DS + A IV  MC+LV     NG
Sbjct: 328 FYHSPEEEIALGPACWMWDYLRRCNGTGFFLPLSGGIDSCATAMIVHSMCRLVTDAAQNG 387

Query: 297 DEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWH 356
           +EQV  D  +I R  +   P   ++ A +IF++ FMG+ENSS+ETR RAK L++ IGS+H
Sbjct: 388 NEQVIKDVRKITRSGDDWIPDSPQDLASKIFHSCFMGTENSSKETRNRAKDLSNAIGSYH 447

Query: 357 LDVSIDTVVSAFLSLFQTLTGKRPRYKL 384
           +D+ +D++VS+ +SLF+  TGK+P YK+
Sbjct: 448 VDLKMDSLVSSVVSLFEVATGKKPIYKI 475

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 1

>sp\|Q5ZMA6\|NADE_CHICK Glutamine-dependent NAD(+) synthetase OS=Gallus gallus GN=NADSYN1 PE=2 SV=1	Back alignment and function description

>sp\|Q54ML1\|NADE_DICDI Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1	Back alignment and function description

>sp\|O74940\|NADE_SCHPO Putative glutamine-dependent NAD(+) synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.02 PE=3 SV=1	Back alignment and function description

>sp\|Q711T7\|NADE_MOUSE Glutamine-dependent NAD(+) synthetase OS=Mus musculus GN=Nadsyn1 PE=2 SV=1	Back alignment and function description

>sp\|Q3ZBF0\|NADE_BOVIN Glutamine-dependent NAD(+) synthetase OS=Bos taurus GN=NADSYN1 PE=2 SV=1	Back alignment and function description

>sp\|Q812E8\|NADE_RAT Glutamine-dependent NAD(+) synthetase OS=Rattus norvegicus GN=Nadsyn1 PE=2 SV=1	Back alignment and function description

>sp\|Q6IA69\|NADE_HUMAN Glutamine-dependent NAD(+) synthetase OS=Homo sapiens GN=NADSYN1 PE=1 SV=3	Back alignment and function description

>sp\|Q4R5Y2\|NADE_MACFA Glutamine-dependent NAD(+) synthetase OS=Macaca fascicularis GN=NADSYN1 PE=2 SV=1	Back alignment and function description

>sp\|Q9VYA0\|NADE_DROME Probable glutamine-dependent NAD(+) synthetase OS=Drosophila melanogaster GN=CG9940 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
224053749		730	predicted protein [Populus trichocarpa]	0.757	0.552	0.821	0.0
449452230		720	PREDICTED: glutamine-dependent NAD(+) sy	0.757	0.559	0.816	0.0
449524932		720	PREDICTED: LOW QUALITY PROTEIN: glutamin	0.757	0.559	0.814	0.0
297847854		725	carbon-nitrogen hydrolase family protein	0.757	0.555	0.797	0.0
15221990		725	NAD synthetase [Arabidopsis thaliana] gi	0.757	0.555	0.794	0.0
225426228		724	PREDICTED: glutamine-dependent NAD(+) sy	0.757	0.556	0.804	0.0
224075164		730	predicted protein [Populus trichocarpa]	0.757	0.552	0.819	0.0
356523661		731	PREDICTED: glutamine-dependent NAD(+) sy	0.757	0.551	0.809	0.0
356513255		731	PREDICTED: glutamine-dependent NAD(+) sy	0.757	0.551	0.801	0.0
255555661		665	glutamine-dependent NAD(+) synthetase, p	0.712	0.569	0.838	0.0

>gi\|224053749\|ref\|XP_002297960.1\| predicted protein [Populus trichocarpa] gi\|222845218\|gb\|EEE82765.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/409 (82%), Positives = 365/409 (89%), Gaps = 6/409 (1%)

Query: 1   MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEI 60
           MPVIKGSERYNCQVLC NRKIIMIRPK+WLANDGNYRELRWFTAWK KDQL DF LP EI
Sbjct: 87  MPVIKGSERYNCQVLCFNRKIIMIRPKMWLANDGNYRELRWFTAWKHKDQLVDFQLPSEI 146

Query: 61  SEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR 120
           +EA+ QKSV FGYG++QFLDTAVA EVCEELFTPIPPHA+LALNGVEVFMNASGSHHQLR
Sbjct: 147 AEAISQKSVHFGYGYVQFLDTAVAAEVCEELFTPIPPHAELALNGVEVFMNASGSHHQLR 206

Query: 121 KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVE 180
           KLD R+RAFI ATH+ GGVYMYSN QGCDGGRLY+DGCSCVVVNG+++AQGSQFSLRD E
Sbjct: 207 KLDVRLRAFIGATHTCGGVYMYSNHQGCDGGRLYYDGCSCVVVNGEVVAQGSQFSLRDSE 266

Query: 181 VVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS 240
           VV+AQVDLDAVA  RGSISSFQEQAS K  +SSV V Y LCQPF+++MSLS PLKI YHS
Sbjct: 267 VVLAQVDLDAVASLRGSISSFQEQASYKNTVSSVLVPYKLCQPFSMQMSLSSPLKINYHS 326

Query: 241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQV 300
           PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI NGDEQV
Sbjct: 327 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIDNGDEQV 386

Query: 301 KADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 360
           KADAIRIG Y +G+FPT+S+EFAKRIFYTVFMGSENSS++T+ RAK+LADEIGSWHLDVS
Sbjct: 387 KADAIRIGNYTDGQFPTDSKEFAKRIFYTVFMGSENSSEDTKKRAKELADEIGSWHLDVS 446

Query: 361 IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEEL---SVYGRLRKIF 406
           ID VVSA LSLFQTLTGKRPRYK   VD G   E L   ++  R+R + 
Sbjct: 447 IDGVVSALLSLFQTLTGKRPRYK---VDGGSNIENLGLQNIQARIRMVL 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449452230\|ref\|XP_004143863.1\| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449524932\|ref\|XP_004169475.1\| PREDICTED: LOW QUALITY PROTEIN: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297847854\|ref\|XP_002891808.1\| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297337650\|gb\|EFH68067.1\| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15221990\|ref\|NP_175906.1\| NAD synthetase [Arabidopsis thaliana] gi\|12321572\|gb\|AAG50835.1\|AC073944_2 hypothetical protein [Arabidopsis thaliana] gi\|38564264\|gb\|AAR23711.1\| At1g55090 [Arabidopsis thaliana] gi\|110736541\|dbj\|BAF00237.1\| hypothetical protein [Arabidopsis thaliana] gi\|332195063\|gb\|AEE33184.1\| NAD synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225426228\|ref\|XP_002263774.1\| PREDICTED: glutamine-dependent NAD(+) synthetase [Vitis vinifera] gi\|297742398\|emb\|CBI34547.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224075164\|ref\|XP_002304569.1\| predicted protein [Populus trichocarpa] gi\|222842001\|gb\|EEE79548.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356523661\|ref\|XP_003530455.1\| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356513255\|ref\|XP_003525329.1\| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max]	Back alignment and taxonomy information

>gi\|255555661\|ref\|XP_002518866.1\| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] gi\|223541853\|gb\|EEF43399.1\| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
TAIR\|locus:2205667		725	AT1G55090 [Arabidopsis thalian	0.755	0.554	0.767	8.8e-228
SGD\|S000001116		714	QNS1 "Glutamine-dependent NAD(	0.721	0.537	0.479	1.5e-138
UNIPROTKB\|Q5ZMA6		707	NADSYN1 "Glutamine-dependent N	0.719	0.541	0.473	1.4e-135
UNIPROTKB\|F1P4D3		707	NADSYN1 "Glutamine-dependent N	0.719	0.541	0.473	2.8e-135
DICTYBASE\|DDB_G0285877		713	nadsyn1 "glutamine-dependent N	0.718	0.535	0.480	7.5e-135
POMBASE\|SPCC553.02		700	SPCC553.02 "glutamine-dependen	0.714	0.542	0.475	1.6e-134
CGD\|CAL0004651		714	orf19.1460 [Candida albicans (	0.718	0.535	0.490	4.7e-133
UNIPROTKB\|Q5ALW6		714	CaO19.1460 "Putative uncharact	0.718	0.535	0.490	4.7e-133
MGI\|MGI:1926164		725	Nadsyn1 "NAD synthetase 1" [Mu	0.753	0.553	0.455	3.3e-132
UNIPROTKB\|Q3ZBF0		706	NADSYN1 "Glutamine-dependent N	0.753	0.567	0.455	1.6e-130

TAIR\|locus:2205667 AT1G55090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1659 (589.1 bits), Expect = 8.8e-228, Sum P(2) = 8.8e-228
 Identities = 313/408 (76%), Positives = 352/408 (86%)

Query:     1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEI 60
             MPVIKG+ERYNCQVLC+NR+IIMIRPK+WLANDGNYRELRWFTAWKQ+++LE+F LP EI
Sbjct:    87 MPVIKGAERYNCQVLCMNRRIIMIRPKMWLANDGNYRELRWFTAWKQREELEEFQLPIEI 146

Query:    61 SEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR 120
             SEAL QKSVPFGYG+IQF+DTAVA EVCEELF+P+PPHA+LALNGVEVFMNASGSHHQLR
Sbjct:   147 SEALEQKSVPFGYGYIQFIDTAVAAEVCEELFSPLPPHAELALNGVEVFMNASGSHHQLR 206

Query:   121 KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRXXX 180
             KLD R+ AF+ ATH+RGGVYMYSNQQGCDG RLY+DGC+C+VVNG+++AQGSQFSLR   
Sbjct:   207 KLDIRLNAFMGATHARGGVYMYSNQQGCDGSRLYYDGCACIVVNGNVVAQGSQFSLRDVE 266

Query:   181 XXXXXXXXXXXXGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS 240
                           RGSISSFQEQASCK K+SSVAV   L Q FNLKM+LS P KI YHS
Sbjct:   267 VIISQVDLDAVASLRGSISSFQEQASCKVKVSSVAVPCRLTQSFNLKMTLSSPKKIIYHS 326

Query:   241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQV 300
             P+EEIAFGP CW+WDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIA GDEQV
Sbjct:   327 PQEEIAFGPACWMWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAKGDEQV 386

Query:   301 KADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 360
             KADA RIG YANG+FPT+S+EFAKRIFYTVFMGSENSS+ET+ R+K+LADEIG+WHLDV 
Sbjct:   387 KADANRIGNYANGQFPTDSKEFAKRIFYTVFMGSENSSEETKRRSKQLADEIGAWHLDVC 446

Query:   361 IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEEL---SVYGRLRKI 405
             ID VVSA LSLFQT+TGKRPRYK   VD G   E L   ++  R+R +
Sbjct:   447 IDGVVSAVLSLFQTVTGKRPRYK---VDGGSNAENLGLQNIQARMRMV 491

GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=RCA

SGD\|S000001116 QNS1 "Glutamine-dependent NAD(+) synthetase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMA6 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P4D3 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285877 nadsyn1 "glutamine-dependent NAD(+) synthetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPCC553.02 SPCC553.02 "glutamine-dependent NAD(+) synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

CGD\|CAL0004651 orf19.1460 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ALW6 CaO19.1460 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

MGI\|MGI:1926164 Nadsyn1 "NAD synthetase 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3ZBF0 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5.1	0.824
3rd Layer	6.3.5	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		532
PLN02339		700	PLN02339, PLN02339, NAD+ synthase (glutamine-hydro	0.0
PLN02339		700	PLN02339, PLN02339, NAD+ synthase (glutamine-hydro	4e-82
cd07570		261	cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe	3e-53
cd00553		248	cd00553, NAD_synthase, NAD+ synthase is a homodime	1e-26
PRK02628		679	PRK02628, nadE, NAD synthetase; Reviewed	7e-23
PRK13981		540	PRK13981, PRK13981, NAD synthetase; Provisional	3e-15
COG0388		274	COG0388, COG0388, Predicted amidohydrolase [Genera	9e-14
cd00553		248	cd00553, NAD_synthase, NAD+ synthase is a homodime	6e-12
pfam02540		242	pfam02540, NAD_synthase, NAD synthase	5e-09
TIGR00552		250	TIGR00552, nadE, NAD+ synthetase	8e-06
COG0171		268	COG0171, NadE, NAD synthase [Coenzyme metabolism]	2e-05
PRK00768		268	PRK00768, nadE, NAD synthetase; Reviewed	4e-05
cd07586		269	cd07586, nitrilase_8, Uncharacterized subgroup of	1e-04
cd07197		253	cd07197, nitrilase, Nitrilase superfamily, includi	2e-04
PRK13980		265	PRK13980, PRK13980, NAD synthetase; Provisional	3e-04
pfam00795		172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	0.001
PRK07521		483	PRK07521, flgK, flagellar hook-associated protein	0.002

>gnl\|CDD\|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

 Score =  784 bits (2026), Expect = 0.0
 Identities = 299/398 (75%), Positives = 335/398 (84%), Gaps = 3/398 (0%)

Query: 1   MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEI 60
           MPVI G  RYNC+V CLNRKI++IRPK+WLANDGNYRELRWFTAWK K ++EDF LP EI
Sbjct: 87  MPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEI 146

Query: 61  SEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR 120
           +EA  QKSVPFG G++QFLDTAVA E CEELFTP  PH DLALNGVE+  N SGSHHQLR
Sbjct: 147 AEATSQKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLR 206

Query: 121 KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVE 180
           KL+ R+    SATH  GGVY+Y+NQ+GCDGGRLY+DGC+C+VVNG+++AQGSQFSL+DVE
Sbjct: 207 KLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLYYDGCACIVVNGEVVAQGSQFSLQDVE 266

Query: 181 VVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS 240
           VV A VDLDAV  FRGSISSF+EQAS K ++ SVAV + LC PF+L +  S PLKI YHS
Sbjct: 267 VVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPLKIRYHS 326

Query: 241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQV 300
           PEEEIA GP CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG MCQLVVK I  GDEQV
Sbjct: 327 PEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQV 386

Query: 301 KADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 360
           KADA RIG YA+GE PT+S+EFAKRIFYTV+MGSENSS+ETR RAK+LADEIGS HLDV 
Sbjct: 387 KADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVK 446

Query: 361 IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSV 398
           ID VVSA LSLFQTLTGKRPRYK   VD G   E L++
Sbjct: 447 IDGVVSAVLSLFQTLTGKRPRYK---VDGGSNAENLAL 481

Length = 700

>gnl\|CDD\|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

>gnl\|CDD\|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)	Back alignment and domain information

>gnl\|CDD\|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>gnl\|CDD\|235057 PRK02628, nadE, NAD synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237577 PRK13981, PRK13981, NAD synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>gnl\|CDD\|217093 pfam02540, NAD_synthase, NAD synthase	Back alignment and domain information

>gnl\|CDD\|233019 TIGR00552, nadE, NAD+ synthetase	Back alignment and domain information

>gnl\|CDD\|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|234831 PRK00768, nadE, NAD synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>gnl\|CDD\|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	Back alignment and domain information

>gnl\|CDD\|184435 PRK13980, PRK13980, NAD synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	Back alignment and domain information

>gnl\|CDD\|236038 PRK07521, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		532
KOG2303		706	consensus Predicted NAD synthase, contains CN hydr	100.0
PLN02339		700	NAD+ synthase (glutamine-hydrolysing)	100.0
PRK02628		679	nadE NAD synthetase; Reviewed	100.0
PRK13981		540	NAD synthetase; Provisional	100.0
cd07570		261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	99.97
TIGR03381		279	agmatine_aguB N-carbamoylputrescine amidase. Membe	99.96
cd07586		269	nitrilase_8 Uncharacterized subgroup of the nitril	99.96
cd07587		363	ML_beta-AS mammalian-like beta-alanine synthase (b	99.96
cd07576		254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	99.96
cd07568		287	ML_beta-AS_like mammalian-like beta-alanine syntha	99.95
PLN00202		405	beta-ureidopropionase	99.95
PRK10438		256	C-N hydrolase family amidase; Provisional	99.95
cd07580		268	nitrilase_2 Uncharacterized subgroup of the nitril	99.95
cd07572		265	nit Nit1, Nit 2, and related proteins, and the Nit	99.95
COG0388		274	Predicted amidohydrolase [General function predict	99.94
cd07573		284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	99.94
cd07583		253	nitrilase_5 Uncharacterized subgroup of the nitril	99.94
PLN02747		296	N-carbamolyputrescine amidase	99.94
PLN02798		286	nitrilase	99.94
cd07581		255	nitrilase_3 Uncharacterized subgroup of the nitril	99.94
cd07569		302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	99.94
cd07584		258	nitrilase_6 Uncharacterized subgroup of the nitril	99.93
cd07585		261	nitrilase_7 Uncharacterized subgroup of the nitril	99.93
cd07565		291	aliphatic_amidase aliphatic amidases (class 2 nitr	99.93
cd07577		259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	99.93
PF02540		242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	99.93
cd07582		294	nitrilase_4 Uncharacterized subgroup of the nitril	99.92
cd07564		297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	99.92
cd07579		279	nitrilase_1_R2 Second nitrilase domain of an uncha	99.92
cd07567		299	biotinidase_like biotinidase and vanins (class 4 n	99.92
PRK13286		345	amiE acylamide amidohydrolase; Provisional	99.92
cd07197		253	nitrilase Nitrilase superfamily, including nitrile	99.92
cd07578		258	nitrilase_1_R1 First nitrilase domain of an unchar	99.92
cd07574		280	nitrilase_Rim1_like Uncharacterized subgroup of th	99.92
cd07575		252	Xc-1258_like Xanthomonas campestris XC1258 and rel	99.91
PLN02504		346	nitrilase	99.91
PRK13980		265	NAD synthetase; Provisional	99.9
PRK13287		333	amiF formamidase; Provisional	99.89
cd00553		248	NAD_synthase NAD+ synthase is a homodimer, which c	99.88
KOG0807		295	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.88
COG0171		268	NadE NAD synthase [Coenzyme metabolism]	99.86
PRK00768		268	nadE NAD synthetase; Reviewed	99.86
cd07571		270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	99.86
PTZ00323		294	NAD+ synthase; Provisional	99.82
cd07566		295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.79
PRK00876		326	nadE NAD synthetase; Reviewed	99.75
TIGR00552		250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	99.74
KOG0806		298	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.7
KOG0808		387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.69
PRK00302		505	lnt apolipoprotein N-acyltransferase; Reviewed	99.68
TIGR00546		391	lnt apolipoprotein N-acyltransferase. This enzyme	99.59
PF00795		186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	99.54
PF03054		356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	99.47
COG0482		356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	99.41
PRK12291		418	apolipoprotein N-acyltransferase; Reviewed	99.33
PRK13825		388	conjugal transfer protein TraB; Provisional	99.07
PRK14665		360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	99.02
KOG2805		377	consensus tRNA (5-methylaminomethyl-2-thiouridylat	99.0
KOG0805		337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.0
COG0815		518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	98.96
PRK14664		362	tRNA-specific 2-thiouridylase MnmA; Provisional	98.92
TIGR00420		352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	98.85
PRK00143		346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	98.79
cd01998		349	tRNA_Me_trans tRNA methyl transferase. This family	98.78
PRK00509		399	argininosuccinate synthase; Provisional	98.59
COG1606		269	ATP-utilizing enzymes of the PP-loop superfamily [	98.57
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	98.56
PRK02628		679	nadE NAD synthetase; Reviewed	98.47
PRK04527		400	argininosuccinate synthase; Provisional	98.46
PLN02347		536	GMP synthetase	98.39
TIGR00884		311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	98.29
cd01996		154	Alpha_ANH_like_III This is a subfamily of Adenine	98.25
PRK00074		511	guaA GMP synthase; Reviewed	98.17
TIGR03573		343	WbuX N-acetyl sugar amidotransferase. This enzyme	98.17
PRK11106		231	queuosine biosynthesis protein QueC; Provisional	98.16
TIGR00364		201	exsB protein. This protein family is represented b	98.15
cd01990		202	Alpha_ANH_like_I This is a subfamily of Adenine nu	98.13
COG0603		222	Predicted PP-loop superfamily ATPase [General func	98.13
PRK13820		394	argininosuccinate synthase; Provisional	98.09
PRK00919		307	GMP synthase subunit B; Validated	98.08
cd01997		295	GMP_synthase_C The C-terminal domain of GMP synthe	98.07
PF00733		255	Asn_synthase: Asparagine synthase; InterPro: IPR00	98.03
PF06508		209	QueC: Queuosine biosynthesis protein QueC; InterPr	97.99
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	97.98
PRK01565		394	thiamine biosynthesis protein ThiI; Provisional	97.91
cd01991		269	Asn_Synthase_B_C The C-terminal domain of Asparagi	97.82
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	97.72
PRK08349		198	hypothetical protein; Validated	97.72
cd01712		177	ThiI ThiI is required for thiazole synthesis in th	97.69
cd01713		173	PAPS_reductase This domain is found in phosphoaden	97.66
cd01994		194	Alpha_ANH_like_IV This is a subfamily of Adenine n	97.65
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	97.65
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	97.64
TIGR00032		394	argG argininosuccinate synthase. argG in bacteria,	97.57
PLN00200		404	argininosuccinate synthase; Provisional	97.53
PRK08384		381	thiamine biosynthesis protein ThiI; Provisional	97.52
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	97.51
PRK14561		194	hypothetical protein; Provisional	97.48
TIGR00342		371	thiazole biosynthesis/tRNA modification protein Th	97.46
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	97.45
PRK09431		554	asnB asparagine synthetase B; Provisional	97.45
PTZ00077		586	asparagine synthetase-like protein; Provisional	97.43
cd01995		169	ExsB ExsB is a transcription regulator related pro	97.42
cd01999		385	Argininosuccinate_Synthase Argininosuccinate synth	97.42
PRK08576		438	hypothetical protein; Provisional	97.34
KOG0571		543	consensus Asparagine synthase (glutamine-hydrolyzi	97.25
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	97.24
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	97.17
COG0519		315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	97.14
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	97.11
TIGR03679		218	arCOG00187 arCOG00187 universal archaeal metal-bin	97.06
PRK13795		636	hypothetical protein; Provisional	97.04
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	96.87
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	96.77
PF02568		197	ThiI: Thiamine biosynthesis protein (ThiI); InterP	96.75
PRK13794		479	hypothetical protein; Provisional	96.74
PRK02090		241	phosphoadenosine phosphosulfate reductase; Provisi	96.37
PRK05253		301	sulfate adenylyltransferase subunit 2; Provisional	96.3
PF01507		174	PAPS_reduct: Phosphoadenosine phosphosulfate reduc	96.29
PRK08557		417	hypothetical protein; Provisional	96.26
cd01986		103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	96.11
PRK01269		482	tRNA s(4)U8 sulfurtransferase; Provisional	95.98
PRK10660		436	tilS tRNA(Ile)-lysidine synthetase; Provisional	95.85
COG2117		198	Predicted subunit of tRNA(5-methylaminomethyl-2-th	95.83
PF00764		388	Arginosuc_synth: Arginosuccinate synthase; InterPr	95.58
PRK05370		447	argininosuccinate synthase; Validated	95.38
COG0137		403	ArgG Argininosuccinate synthase [Amino acid transp	95.32
KOG1622		552	consensus GMP synthase [Nucleotide transport and m	95.15
TIGR00289		222	conserved hypothetical protein TIGR00289. Homologo	94.83
COG0301		383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	94.8
COG1365		255	Predicted ATPase (PP-loop superfamily) [General fu	94.7
TIGR00434		212	cysH phosophoadenylyl-sulfate reductase (thioredox	94.1
TIGR02057		226	PAPS_reductase phosphoadenosine phosphosulfate red	93.44
TIGR02039		294	CysD sulfate adenylyltransferase, small subunit. I	93.19
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	92.89
PRK12563		312	sulfate adenylyltransferase subunit 2; Provisional	92.72
KOG1706		412	consensus Argininosuccinate synthase [Amino acid t	90.79
COG0175		261	CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr	89.61
TIGR03183		447	DNA_S_dndC putative sulfurtransferase DndC. Member	86.52
TIGR00290		223	MJ0570_dom MJ0570-related uncharacterized domain.	84.48
COG2102		223	Predicted ATPases of PP-loop superfamily [General	83.58
PRK06850		507	hypothetical protein; Provisional	83.53

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=4.9e-169  Score=1302.47  Aligned_cols=498  Identities=60%  Similarity=1.029  Sum_probs=487.9

Q ss_pred             CCeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537            1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD   80 (532)
Q Consensus         1 mPv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~   80 (532)
                      |||+|++.+|||++++.||+||.|+||+.|+|+|||||.|||+||.+++.+|+|.||.+|++.++|++|||||.|+++.|
T Consensus        88 mPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGdavl~~~d  167 (706)
T KOG2303|consen   88 MPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDAVLQTWD  167 (706)
T ss_pred             CchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccceeeeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537           81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC  160 (532)
Q Consensus        81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~  160 (532)
                      ++||.|||||||+|.+||+.|+++|||||+|.|+|||++||++.|.+|+..++.++|++|+|+||.||||+|+|||||||
T Consensus       168 t~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlYydGca~  247 (706)
T KOG2303|consen  168 TCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLYYDGCAM  247 (706)
T ss_pred             cchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeEecchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhhhhhccCCccEEEEeeeccCCccccccCCCCccccCCC
Q 009537          161 VVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS  240 (532)
Q Consensus       161 I~~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~p~~~~~~~  240 (532)
                      |+.||+++||++||+++|++|++|+|||+++|++|..++|++.+++....|+||++||+++...+....++.|+++.+|+
T Consensus       248 Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~e~~~hs  327 (706)
T KOG2303|consen  248 IAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPIEWKYHS  327 (706)
T ss_pred             eeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCcccccCC
Confidence            99999999999999999999999999999999999999999999988889999999999997666555889999999999


Q ss_pred             cHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchh
Q 009537          241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR  320 (532)
Q Consensus       241 peeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~  320 (532)
                      |+|||+.||||||||||||||+.|||||||||+|||++|+||++||++|++|++.||+||+.|++++..+ .+|+|++|+
T Consensus       328 PeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~~p~dp~  406 (706)
T KOG2303|consen  328 PEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISYTPTDPA  406 (706)
T ss_pred             cHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCcCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999876 589999999


Q ss_pred             hccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCc-----------------
Q 009537          321 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK-----------------  383 (532)
Q Consensus       321 e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~-----------------  383 (532)
                      +|||++|+||||+|+|||+||+.+|++||++||++|.+++||++|++++++|..+||++|+|+                 
T Consensus       407 ~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enlaLQNiQA  486 (706)
T KOG2303|consen  407 DLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLALQNIQA  486 (706)
T ss_pred             HHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998                 


Q ss_pred             --------------------------------------------------------------------------------
Q 009537          384 --------------------------------------------------------------------------------  383 (532)
Q Consensus       384 --------------------------------------------------------------------------------  383 (532)
                                                                                                      
T Consensus       487 RiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~i  566 (706)
T KOG2303|consen  487 RIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGLPALQSI  566 (706)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCchHHHHH
Confidence                                                                                            


Q ss_pred             -------------------chhhhcCCCEeeeceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhc
Q 009537          384 -------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN  444 (532)
Q Consensus       384 -------------------tDE~dmGmtY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~n  444 (532)
                                         |||+||||||+||++||||||..+||||+||++|++.|+++++|+||+|||||||.+|++|
T Consensus       567 l~a~pTAELePl~~g~~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF~~Y~iN  646 (706)
T KOG2303|consen  567 LDAPPTAELEPLTDGDYSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFFSYYSIN  646 (706)
T ss_pred             hcCCCcccccccccCcccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHHhhheec
Confidence                               8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcCcCCcccccccCCCCCCCccccccccCCCCCcchhhHHHHHHhhhcCCCCC
Q 009537          445 RHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPF  499 (532)
Q Consensus       445 rhKr~~~~Ps~h~e~ys~ddnr~d~r~fly~~~~~~~f~~i~~~~~~~~~~~~~~  499 (532)
                      |||||++|||||||+||||||||||||||||++|||||+|||++|+++|+...+.
T Consensus       647 RHKmTvlTPsyHAE~YspeDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~~  701 (706)
T KOG2303|consen  647 RHKMTVLTPSYHAENYSPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTKS  701 (706)
T ss_pred             cccceecccccccccCCCccccccccccccCCCCchHHHHHHHHHHHhhhccCcc
Confidence            9999999999999999999999999999999999999999999999999876553

>PLN02339 NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

>PRK02628 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK13981 NAD synthetase; Provisional	Back alignment and domain information

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)	Back alignment and domain information

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase	Back alignment and domain information

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)	Back alignment and domain information

>cd07576 R-amidase_like Pseudomonas sp	Back alignment and domain information

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)	Back alignment and domain information

>PLN00202 beta-ureidopropionase	Back alignment and domain information

>PRK10438 C-N hydrolase family amidase; Provisional	Back alignment and domain information

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)	Back alignment and domain information

>COG0388 Predicted amidohydrolase [General function prediction only]	Back alignment and domain information

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	Back alignment and domain information

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>PLN02747 N-carbamolyputrescine amidase	Back alignment and domain information

>PLN02798 nitrilase	Back alignment and domain information

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)	Back alignment and domain information

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)	Back alignment and domain information

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6	Back alignment and domain information

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)	Back alignment and domain information

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)	Back alignment and domain information

>PRK13286 amiE acylamide amidohydrolase; Provisional	Back alignment and domain information

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	Back alignment and domain information

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	Back alignment and domain information

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)	Back alignment and domain information

>PLN02504 nitrilase	Back alignment and domain information

>PRK13980 NAD synthetase; Provisional	Back alignment and domain information

>PRK13287 amiF formamidase; Provisional	Back alignment and domain information

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]	Back alignment and domain information

>COG0171 NadE NAD synthase [Coenzyme metabolism]	Back alignment and domain information

>PRK00768 nadE NAD synthetase; Reviewed	Back alignment and domain information

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)	Back alignment and domain information

>PTZ00323 NAD+ synthase; Provisional	Back alignment and domain information

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)	Back alignment and domain information

>PRK00876 nadE NAD synthetase; Reviewed	Back alignment and domain information

>TIGR00552 nadE NAD+ synthetase	Back alignment and domain information

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed	Back alignment and domain information

>TIGR00546 lnt apolipoprotein N-acyltransferase	Back alignment and domain information

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []	Back alignment and domain information

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	Back alignment and domain information

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12291 apolipoprotein N-acyltransferase; Reviewed	Back alignment and domain information

>PRK13825 conjugal transfer protein TraB; Provisional	Back alignment and domain information

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]	Back alignment and domain information

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Back alignment and domain information

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	Back alignment and domain information

>cd01998 tRNA_Me_trans tRNA methyl transferase	Back alignment and domain information

>PRK00509 argininosuccinate synthase; Provisional	Back alignment and domain information

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>PRK02628 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK04527 argininosuccinate synthase; Provisional	Back alignment and domain information

>PLN02347 GMP synthetase	Back alignment and domain information

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit	Back alignment and domain information

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK00074 guaA GMP synthase; Reviewed	Back alignment and domain information

>TIGR03573 WbuX N-acetyl sugar amidotransferase	Back alignment and domain information

>PRK11106 queuosine biosynthesis protein QueC; Provisional	Back alignment and domain information

>TIGR00364 exsB protein	Back alignment and domain information

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK00919 GMP synthase subunit B; Validated	Back alignment and domain information

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase	Back alignment and domain information

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)	Back alignment and domain information

>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK01565 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PRK08349 hypothetical protein; Validated	Back alignment and domain information

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway	Back alignment and domain information

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>TIGR00032 argG argininosuccinate synthase	Back alignment and domain information

>PLN00200 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK08384 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>PRK14561 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>cd01995 ExsB ExsB is a transcription regulator related protein	Back alignment and domain information

>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase	Back alignment and domain information

>PRK08576 hypothetical protein; Provisional	Back alignment and domain information

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell	Back alignment and domain information

>PRK13794 hypothetical protein; Provisional	Back alignment and domain information

>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional	Back alignment and domain information

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>PRK08557 hypothetical protein; Provisional	Back alignment and domain information

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases	Back alignment and domain information

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional	Back alignment and domain information

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional	Back alignment and domain information

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6	Back alignment and domain information

>PRK05370 argininosuccinate synthase; Validated	Back alignment and domain information

>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR00289 conserved hypothetical protein TIGR00289	Back alignment and domain information

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]	Back alignment and domain information

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin)	Back alignment and domain information

>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent	Back alignment and domain information

>TIGR02039 CysD sulfate adenylyltransferase, small subunit	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>PRK12563 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC	Back alignment and domain information

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain	Back alignment and domain information

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]	Back alignment and domain information

>PRK06850 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		532
3ilv_A		634	Crystal Structure Of A Glutamine-Dependent Nad(+) S		2e-19
3dla_A		680	X-ray Crystal Structure Of Glutamine-dependent Nad+		8e-07
3sdb_A		680	Crystal Structure Of C176a Mutant Of Glutamine-Depe		8e-06
2pz8_A		284	Nad+ Synthetase From Bacillus Anthracis With Amp-Cp		2e-04

>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+) Synthetase From Cytophaga Hutchinsonii Length = 634

Back alignment and structure

Iteration: 1

Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/383 (23%), Positives = 149/383 (38%), Gaps = 48/383 (12%) Query: 10 YNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSV 69 YNC L N + K +LAN+G + E RWFTAW + H + Sbjct: 96 YNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRN---------HTTTFLYNDVKY 146 Query: 70 PFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF 129 PFG D + E+CE+ + G + +N S SH K R Sbjct: 147 PFGDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLV 206 Query: 130 ISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRXXXXXXXXXXXX 189 I + Y+Y+N G + GR +DG + G +I + + S + Sbjct: 207 IGGSERFDCTYVYANLLGNEAGRXIYDGEVLIAHKGKLIQRNDRLSFKNVNL-------- 258 Query: 190 XXXGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGP 249 I + S +T +V Q L + F E + G Sbjct: 259 --------IYADIATDSAETP-ETVLTQDDLEKEFEFW---------------EATSLG- 293 Query: 250 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADA---IR 306 L+DY R+S + GF+L LSGGADSS+ A V + +KE+ K++ Sbjct: 294 ---LFDYXRKSRSKGFVLSLSGGADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFD 350 Query: 307 IGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVS 366 + + F ++++ T + + NS ET AK LA+ IG+ + S+D + Sbjct: 351 LPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIE 410 Query: 367 AFLSLFQTLTGKRPRYKLDEVDM 389 + + + + + ++ D++ + Sbjct: 411 QYKATIENVIERPLTWEKDDITL 433

PyMOL of 3ilv

>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+ Synthetase From Mycobacterium Tuberculosis Bound To Naad+ And Don Length = 680

Back alignment and structure

>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent Nad+ Synthetase From M. Tuberculosis In Apo Form Length = 680

Back alignment and structure

>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And Mg2+ Length = 284

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		532
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	1e-115
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	1e-27
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	1e-100
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	1e-22
3n05_A		590	NH(3)-dependent NAD(+) synthetase; ligase, structu	2e-29
4f4h_A		565	Glutamine dependent NAD+ synthetase; structural ge	2e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
3p52_A		249	NH(3)-dependent NAD(+) synthetase; structural geno	3e-08
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	3e-08
1xng_A		268	NH(3)-dependent NAD(+) synthetase; amidotransferas	5e-07
1kqp_A		271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	6e-07
3dpi_A		285	NAD+ synthetase; ssgcid, decode, structural genomi	2e-06
2e18_A		257	NH(3)-dependent NAD(+) synthetase; ligase, structu	5e-06
3hkx_A		283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	5e-05
3q4g_A		279	NH(3)-dependent NAD(+) synthetase; structural geno	1e-04

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634	Back alignment and structure

 Score =  354 bits (911), Expect = e-115
 Identities = 88/397 (22%), Positives = 155/397 (39%), Gaps = 52/397 (13%)

Query: 1   MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEI 60
           +P+      YNC  L  N  +     K +LAN+G + E RWFTAW +          H  
Sbjct: 87  LPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPR---------NHTT 137

Query: 61  SEALCQKSVPFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR 120
           +        PFG       D  +  E+CE+ +            G  + +N S SH    
Sbjct: 138 TFLYNDVKYPFGDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFG 197

Query: 121 KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVE 180
           K   R    I  +      Y+Y+N  G + GR+ +DG   +   G +I +  + S ++V 
Sbjct: 198 KSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMIYDGEVLIAHKGKLIQRNDRLSFKNVN 257

Query: 181 VVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS 240
           ++ A +  D+       ++                                         
Sbjct: 258 LIYADIATDSAETPETVLTQD------------------------------------DLE 281

Query: 241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQV 300
            E E        L+DY+R+S + GF+L LSGGADSS+ A +V  M +  +KE+       
Sbjct: 282 KEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQ 341

Query: 301 KADAIRIG---RYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHL 357
           K++   +       +  F  ++++       T +  + NS  ET   AK LA+ IG+   
Sbjct: 342 KSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFY 401

Query: 358 DVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYE 394
           + S+D  +  + +  + +  +   ++ D++    T +
Sbjct: 402 NWSVDEEIEQYKATIENVIERPLTWEKDDI----TLQ 434

PyMOL of 3ilv

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680	Back alignment and structure

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590	Back alignment and structure

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} Length = 249	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Length = 249	Back alignment and structure

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268	Back alignment and structure

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Length = 271	Back alignment and structure

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} Length = 285	Back alignment and structure

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Length = 257	Back alignment and structure

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283	Back alignment and structure

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} Length = 279	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		532
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	100.0
4f4h_A		565	Glutamine dependent NAD+ synthetase; structural ge	100.0
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	100.0
3n05_A		590	NH(3)-dependent NAD(+) synthetase; ligase, structu	100.0
3p8k_A		281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	99.96
3ivz_A		262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	99.96
3hkx_A		283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	99.96
2w1v_A		276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	99.96
1f89_A		291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	99.95
2e11_A		266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	99.95
2vhh_A		405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	99.95
1uf5_A		303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	99.95
2uxy_A		341	Aliphatic amidase; nitrilase superfamily, hydrolas	99.94
2dyu_A		334	Formamidase; AMIF, CEK, catalytic triad, helicobac	99.93
1ems_A		440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.93
1wxi_A		275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	99.9
1kqp_A		271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	99.9
1xng_A		268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.88
3q4g_A		279	NH(3)-dependent NAD(+) synthetase; structural geno	99.87
3p52_A		249	NH(3)-dependent NAD(+) synthetase; structural geno	99.86
2e18_A		257	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.84
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	99.83
3dpi_A		285	NAD+ synthetase; ssgcid, decode, structural genomi	99.82
2hma_A		376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	98.9
2der_A		380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	98.79
2vxo_A		697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	98.63
1gpm_A		525	GMP synthetase, XMP aminase; class I glutamine ami	98.42
2pg3_A		232	Queuosine biosynthesis protein QUEC; YP_049261.1,	98.41
2dpl_A		308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	98.41
2ywb_A		503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	98.26
3uow_A		556	GMP synthetase; structural genomics consortium, SG	98.25
3bl5_A		219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	98.23
3tqi_A		527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	98.06
1vl2_A		421	Argininosuccinate synthase; TM1780, structural gen	98.05
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	97.99
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	97.95
2c5s_A		413	THII, probable thiamine biosynthesis protein THII;	97.85
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	97.85
1sur_A		215	PAPS reductase; assimilatory sulfate reduction, 3-	97.8
1kor_A		400	Argininosuccinate synthetase; ligase, riken struct	97.7
1k92_A		455	Argininosuccinate synthase, argininosuccinate SY;	97.7
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	97.65
2nz2_A		413	Argininosuccinate synthase; amino-acid biosynthesi	97.59
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	97.57
2o8v_A		252	Phosphoadenosine phosphosulfate reductase; disulfi	97.44
3rjz_A		237	N-type ATP pyrophosphatase superfamily; structural	97.42
1vbk_A		307	Hypothetical protein PH1313; structural genomics,	97.35
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	97.29
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	97.13
2wsi_A		306	FAD synthetase; transferase, nucleotidyltransferas	96.64
2oq2_A		261	Phosphoadenosine phosphosulfate reductase; sulfate	96.58
1zun_A		325	Sulfate adenylyltransferase subunit 2; beta barrel	96.36
2goy_A		275	Adenosine phosphosulfate reductase; iron sulfur cl	95.83
3fwk_A		308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	91.54

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

Probab=100.00  E-value=7.9e-86  Score=735.69  Aligned_cols=414  Identities=27%  Similarity=0.427  Sum_probs=360.6

Q ss_pred             CCeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537            1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD   80 (532)
Q Consensus         1 mPv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~   80 (532)
                      +|+++++++|||++++.+|+|+++|+|+|||++|+|+|.|||+||+... .+++.        .++..+|||+.+|++++
T Consensus        87 ~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~-~~~~~--------~~g~~~p~g~~vf~~~g  157 (634)
T 3ilv_A           87 LPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNH-TTTFL--------YNDVKYPFGDVLYNVKD  157 (634)
T ss_dssp             EEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTC-EEEEE--------ETTEEEEEESCCEEETT
T ss_pred             eeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCccc-cceec--------ccCcccccCCeEEEECC
Confidence            4677889999999999999999999999999999999999999998752 22332        36789999999999999


Q ss_pred             ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537           81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC  160 (532)
Q Consensus        81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~  160 (532)
                      ++||++||||+|||+++++.++++|||||+|||+||+..+|...|..+++++|.+|+++|+|||++|+++++++|+|+|+
T Consensus       158 ~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~  237 (634)
T 3ilv_A          158 ARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMIYDGEVL  237 (634)
T ss_dssp             EEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCEEECCEE
T ss_pred             EEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceEEcceEE
Confidence            99999999999999669999999999999999999999999999999999999999999999999999878899999999


Q ss_pred             EEeCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhhhhhccCCccEEEEeeeccCCccccccCCCCccccCCC
Q 009537          161 VVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS  240 (532)
Q Consensus       161 I~~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~p~~~~~~~  240 (532)
                      |+|+|++++++++|+++++++++++||++.++..|.+.                                    +..++.
T Consensus       238 I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~------------------------------------~~~~~~  281 (634)
T 3ilv_A          238 IAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVL------------------------------------TQDDLE  281 (634)
T ss_dssp             EEETTEEEEECCSSCSSSEEEEEEEEEC--------------------------------------------------CC
T ss_pred             EEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcC------------------------------------CCCCCC
Confidence            99999999999999876778999999999887666320                                    011457


Q ss_pred             cHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHH-----HhcccCCCCC
Q 009537          241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAI-----RIGRYANGEF  315 (532)
Q Consensus       241 peeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~-----~i~~~~~~~~  315 (532)
                      |+|||+.+++|||||||+++|.+|++||||||+|||++|+||++||+++++++  |+++|+.+++     ++......+.
T Consensus       282 ~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~~~~~~~  359 (634)
T 3ilv_A          282 KEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPALQHLPF  359 (634)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSCSSCTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--Cchhhhhhhhccccccccccccccc
Confidence            89999999999999999999999999999999999999999999999999997  7899999987     3443333457


Q ss_pred             CCchhhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCc------------
Q 009537          316 PTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK------------  383 (532)
Q Consensus       316 p~~~~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~------------  383 (532)
                      |+++++||+..|+||||++.+|+..++++|++||+.||++|++|||+++++++.+.|...+|++|+|+            
T Consensus       360 ~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR  439 (634)
T 3ilv_A          360 EEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQAR  439 (634)
T ss_dssp             HHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHH
T ss_pred             ccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHH
Confidence            78899999999999999999999999999999999999999999999999999999988889988765            


Q ss_pred             --------------------------------------------------------------------------------
Q 009537          384 --------------------------------------------------------------------------------  383 (532)
Q Consensus       384 --------------------------------------------------------------------------------  383 (532)
                                                                                                      
T Consensus       440 ~R~~~l~~~A~~~g~lvlgTgnksE~~~Gy~T~ygD~~~~~~Pl~~l~KteVr~la~~l~~~~glp~l~~i~~k~pSaeL  519 (634)
T 3ilv_A          440 GRAPIIWMLTNVKQALLITTSNRSEGDVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAEL  519 (634)
T ss_dssp             TTHHHHHHHHHHHTCEEBCCCCHHHHHTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHHHHSCCGGGSSCC--------
T ss_pred             HHHHHHHHHHHhcCCEEeccCchhhHhhCCccccCCcccCCcccCCCcHHHHHHHHHHHHHcCCCchHHHHcCCCCCcCc
Confidence                                                                                            


Q ss_pred             -------chhhhcCCCEeeeceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcccCcCcCCcccc
Q 009537          384 -------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYH  456 (532)
Q Consensus       384 -------tDE~dmGmtY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr~~~~Ps~h  456 (532)
                             +||++| |||++||.|++++++.++||.+|+.++.+.|+  +++++|++||++||++|++|||||+++||++|
T Consensus       520 ~p~~~~q~de~~l-~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~~~--~~~~~i~~~v~~~~~~~~~~~~Kr~~~pp~~~  596 (634)
T 3ilv_A          520 RPSEYTQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFH  596 (634)
T ss_dssp             -----------CC-CTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHTHHHHTTCCCBCC
T ss_pred             CcCCCCCCCcccc-CCHHHHHHHHHHHHHcCCCHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHhHhccccCCCceE
Confidence                   789999 99999999999999999999999999999997  99999999999999999999999999999999


Q ss_pred             cccCCCCC
Q 009537          457 AESYSPED  464 (532)
Q Consensus       457 ~e~ys~dd  464 (532)
                      +++||+|.
T Consensus       597 v~~~~~~p  604 (634)
T 3ilv_A          597 MDDFNIDP  604 (634)
T ss_dssp             CSSCCCCT
T ss_pred             EeCCCCCC
Confidence            99999993

PyMOL of 3ilv

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*	Back alignment and structure

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}	Back alignment and structure

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}	Back alignment and structure

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A	Back alignment and structure

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}	Back alignment and structure

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}	Back alignment and structure

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1	Back alignment and structure

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}	Back alignment and structure

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A	Back alignment and structure

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A	Back alignment and structure

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A	Back alignment and structure

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A	Back alignment and structure

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1	Back alignment and structure

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*	Back alignment and structure

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A	Back alignment and structure

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A	Back alignment and structure

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0	Back alignment and structure

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0	Back alignment and structure

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}	Back alignment and structure

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0	Back alignment and structure

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}	Back alignment and structure

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*	Back alignment and structure

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}	Back alignment and structure

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1	Back alignment and structure

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1	Back alignment and structure

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A	Back alignment and structure

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*	Back alignment and structure

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}	Back alignment and structure

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}	Back alignment and structure

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}	Back alignment and structure

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2	Back alignment and structure

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*	Back alignment and structure

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*	Back alignment and structure

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}	Back alignment and structure

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A	Back alignment and structure

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1	Back alignment and structure

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}	Back alignment and structure

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2	Back alignment and structure

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}	Back alignment and structure

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		532
d1kqpa_		271	c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacil	7e-16
d1wxia1		274	c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {	4e-08
d1xnga1		255	c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {	1e-06
d1emsa2		271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	8e-06
d1f89a_		281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	0.001

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Length = 271	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

 Score = 75.7 bits (185), Expect = 7e-16
 Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 92/274 (33%)

Query: 240 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--ANGD 297
            P++EI      +L  Y++++GA GF+L +SGG DS     + G + QL V+ I    GD
Sbjct: 17  DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGD 71

Query: 298 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM---------------------GSEN 336
            Q  A  +  G   + +    + +F K      F                          
Sbjct: 72  AQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNK 131

Query: 337 SSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT--------------LTGKRPRY 382
            + + R R        G   L V      +  ++ F T              LT ++ R 
Sbjct: 132 GNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRT 191

Query: 383 KL--------------------------DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKN 416
            L                          DE ++G++Y+E+  Y   +++           
Sbjct: 192 LLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV----------- 240

Query: 417 LCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 450
                      ++V+E ++   K YS+  HK  V
Sbjct: 241 ----------SAKVSEALE---KRYSMTEHKRQV 261

PyMOL of d1kqpa_

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Length = 274	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Length = 255	Back information, alignment and structure

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271	Back information, alignment and structure

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		532
d1j31a_		262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	99.94
d1uf5a_		303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	99.94
d1emsa2		271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.94
d1f89a_		281	hypothetical protein yl85 {Baker's yeast (Saccharo	99.91
d1kqpa_		271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	99.91
d1xnga1		255	NH3-dependent NAD+-synthetase {Helicobacter pylori	99.91
d1wxia1		274	NH3-dependent NAD+-synthetase {Escherichia coli [T	99.84
d1gpma1		197	GMP synthetase, central domain {Escherichia coli [	98.8
d1jgta1		299	beta-Lactam synthetase {Streptomyces clavuligerus	98.16
d1q15a1		296	beta-Lactam synthetase {Pectobacterium carotovorum	97.69
d2pg3a1		230	Queuosine biosynthesis protein QueC {Erwinia carot	97.67
d2c5sa1		218	Thiamine biosynthesis protein ThiI, C-terminal dom	97.63
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	97.53
d1k92a1		188	Argininosuccinate synthetase, N-terminal domain {E	97.43
d1j20a1		165	Argininosuccinate synthetase, N-terminal domain {T	97.41
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	97.39
d1vl2a1		168	Argininosuccinate synthetase, N-terminal domain {T	97.38
d1ct9a1		324	Asparagine synthetase B, C-terminal domain {Escher	96.76
d1zuna1		211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	96.59
d1sura_		215	Phosphoadenylyl sulphate (PAPS) reductase {Escheri	96.42
d1vbka1		132	Hypothetical protein PH1313, C-terminal domain {Ar	92.68
d2d13a1		226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	92.28

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=1.9e-27  Score=234.13  Aligned_cols=157  Identities=22%  Similarity=0.217  Sum_probs=139.8

Q ss_pred             CeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537            2 PVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT   81 (532)
Q Consensus         2 Pv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~   81 (532)
                      +...++++||+++++.+|++++.|+|+||+.    .|.+||++|+...                        .||+++++
T Consensus        88 ~~~~~~~~~n~~~~i~~g~~~~~y~K~~l~~----~e~~~~~~G~~~~------------------------~v~~~~~~  139 (262)
T d1j31a_          88 AEKSGNYLYNSAVVVGPRGYIGKYRKIHLFY----REKVFFEPGDLGF------------------------KVFDIGFA  139 (262)
T ss_dssp             EEEETTEEEEEEEEEETTEEEEEEECSSCCT----THHHHCCCCCSCS------------------------CEEECSSC
T ss_pred             eecccccccccceEEEeeeEEEEEeeeecCc----cCceeECCCCCCc------------------------eEEEeCCc
Confidence            4567889999999999999999999999984    6889999997642                        48999999


Q ss_pred             cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEE
Q 009537           82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCV  161 (532)
Q Consensus        82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I  161 (532)
                      |||+.||+|+|+| +..+.++++|||||++|+++....     +..+++++|.+|+++++++|++|.+ +++.|.|+|+|
T Consensus       140 ~ig~~IC~D~~~p-e~~~~~~~~ga~lil~p~~~~~~~-----~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~i  212 (262)
T d1j31a_         140 KVGVMICFDWFFP-ESARTLALKGAEIIAHPANLVMPY-----APRAMPIRALENRVYTITADRVGEE-RGLKFIGKSLI  212 (262)
T ss_dssp             EEEECCGGGGGSH-HHHHHHHHTTCSEEEEECCCCSSC-----HHHHHHHHHHHHTCEEEEECCCSEE-TTEECCCCCEE
T ss_pred             eEEEEEehhhhhh-HHHHHHHHhccccccCCccccccc-----chhhhhhhhhcccceEEEEeccccc-CCccccCCCEE
Confidence            9999999999999 788999999999999999987643     4566789999999999999999998 67889999999


Q ss_pred             E-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhc
Q 009537          162 V-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRG  196 (532)
Q Consensus       162 ~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~  196 (532)
                      + |+|+++++++.++   +++++++||++.++.+|.
T Consensus       213 ~~p~G~~l~~~~~~~---e~i~~a~iDl~~~~~~r~  245 (262)
T d1j31a_         213 ASPKAEVLSIASETE---EEIGVVEIDLNLARNKRL  245 (262)
T ss_dssp             ECTTSCEEEECCSSC---CEEEEEEECHHHHHCCEE
T ss_pred             EeCCCCEEEEcCCCC---CEEEEEEEEcHHHHHHHH
Confidence            9 9999999998875   379999999999987774

PyMOL of d1j31a_

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}	Back information, alignment and structure

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}	Back information, alignment and structure

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure