Citrus Sinensis ID: 009538
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV10 | 616 | Probable peptide/nitrate | yes | no | 0.968 | 0.836 | 0.575 | 0.0 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.964 | 0.806 | 0.587 | 0.0 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.992 | 0.899 | 0.562 | 1e-178 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.943 | 0.809 | 0.473 | 1e-140 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.954 | 0.881 | 0.445 | 1e-122 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.932 | 0.870 | 0.398 | 1e-107 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.924 | 0.886 | 0.417 | 1e-106 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.937 | 0.837 | 0.414 | 1e-104 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.937 | 0.875 | 0.384 | 1e-104 | |
| Q3E8X3 | 559 | Probable peptide/nitrate | no | no | 0.909 | 0.865 | 0.380 | 1e-100 |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/516 (57%), Positives = 396/516 (76%), Gaps = 1/516 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
+KSITA T+IN FSGT NF T + AFL DTYFGRYKTL A +A FLG V+ LTAA+ +
Sbjct: 81 LKSITAATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQ 140
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP CG C GP+ Q+AFL GLG +V+GAGGIRPCNLAFGADQFNP +ESGK+
Sbjct: 141 LHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKR 200
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWY+FTFTFA ++SLT++VYVQS+VSW GL IPA +MFL+C +FF G +LY K
Sbjct: 201 GIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVK 260
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
+K GSPLA QV AIKKR LK ++PWL L+N+ P NSKL +T QFR LDKAA
Sbjct: 261 IKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAA 320
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+TPED+++ DG +PW+L +MQ+VEEVK ++RV+PIW ++ +YY+ + QQ TY VFQA
Sbjct: 321 ILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQA 380
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRR+G+ F IPAA+Y +F M G+T++I +YDR++VP ++R+T + GIT+LQR+
Sbjct: 381 LQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGT 440
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G+ A +++++G +E++RR+ AL++P +G+ R+G ISS+S +WLIPQLSL G +EAF
Sbjct: 441 GIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFA 500
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
I ++EFYYKQFPENMRS GS+ +VG +S+YL FLI+ VHR T+ +S G+WL EDLN
Sbjct: 501 AIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLN 560
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 515
KGRLD FY+++A + +NF +FL+ ++WY+YKGS D
Sbjct: 561 KGRLDLFYFMIAGILAVNFAYFLVMSRWYRYKGSDD 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/516 (58%), Positives = 394/516 (76%), Gaps = 3/516 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
+KS TA T+IN FSGT NF T + AFL DTYFGRYKTL A +A FLG V+ LTAAI
Sbjct: 99 LKSYTAATIINAFSGTINFGTFIAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPS 158
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP CGN+ S C GP+ Q+ FL GLG +V+GAGGIRPCNLAFGADQFNP +ESGK+
Sbjct: 159 LHPVACGNKIS--CEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKK 216
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWY+FTFTFA +ISLT +VY+QS+VSW GL IP +MFL+C +FF G RLY K
Sbjct: 217 GINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVK 276
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VK GSPLA +V AAIKKR LK ++PW+ L+NHIP N N+ L +T QFR LDKAA
Sbjct: 277 VKASGSPLAGIARVIAAAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAA 336
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
IMTPE+++ SDG+A +PW+L ++Q+VEEVK ++RVIPIW ++ +YY+A+ Q TY VFQA
Sbjct: 337 IMTPEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQA 396
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRR+G+ F+IPAA+Y +F M G+T++I YDR++VP L+R+T E GI++LQR+
Sbjct: 397 LQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGA 456
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G AI ++++SG IE++RR+ AL++P +G+ R G ISS+S LWLIPQL+L G +EAF
Sbjct: 457 GFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFA 516
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
I ++EFYYKQFPENM+S GS+ +VG +S+YL FLIS VHR T + +G+WL EDLN
Sbjct: 517 AIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLN 576
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 515
K +LDYFY+++ L ++N +FLL A+WY+YKG D
Sbjct: 577 KAKLDYFYFMLTGLMVVNMAYFLLMARWYRYKGGND 612
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/533 (56%), Positives = 394/533 (73%), Gaps = 5/533 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITA ++NI+ GT+NF T++ AFL D+YFGRYKTL FA +A FLG + + LTA I
Sbjct: 57 MKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHP 116
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP C + C GP+ Q+ FL + L+VIGAGGIRPCNL FGADQF+P T+ GK+
Sbjct: 117 LHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKR 176
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWY+FTFTFA M+SLT+IVYVQS+VSW+ GL IPA +M L C +FF GS+LY K
Sbjct: 177 GIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVK 236
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VK GSP+ S +V V AIKKR LK P P L+N+I + NSKL HT QFR LDK+A
Sbjct: 237 VKASGSPIHSITRVIVVAIKKRRLK-PVGPN-ELYNYIASDFKNSKLGHTEQFRFLDKSA 294
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I T +D++ DGS ++ W+L SMQ+VEEVK +IRV+P+W SA ++Y+A +QQ TY +FQ+
Sbjct: 295 IQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQS 354
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRR+G F+IPA SY +F MLG+TI+IPIYDR++VP L++ T ++GGIT LQR+
Sbjct: 355 LQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGA 414
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G+ L I +M++S I+E RR +AL++P +GL R+GAISS+SG+WLIPQL L+G ++A
Sbjct: 415 GLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALA 474
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
+ ++EFYYKQFPENMRS GSL + G +++YL+ FL+S VH T+G S G WLPEDLN
Sbjct: 475 GVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLN 534
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV 532
KGRL+YFY+LVA + LN +FLL + WY+YK A + M+K + E V
Sbjct: 535 KGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYKDV--VAKDKDMDKTSAEFDKV 585
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/515 (47%), Positives = 348/515 (67%), Gaps = 13/515 (2%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
++ + A +INI+SG TN L+GA++SDTY GR+KT+ FAS A+ LG++ ++LTA+ +
Sbjct: 89 LEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQ 148
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP C +QD +C GP Q+ L GL + +G+GGIRPC++ FG DQF+ TE G +
Sbjct: 149 LHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVK 208
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G+ SFFNWYY TFT ++I+ TV+VY+Q VSW G IP +M L+ MFF G + Y
Sbjct: 209 GVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVY 268
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDK 238
VKPEGS + QV VAA KKR LKLP E T+ + P K+ + SKL + QFRCLDK
Sbjct: 269 VKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDK 328
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
AA++ E + +G + WRL S+Q+VEEVK LIR++PIW++ I+ A+ Q T+ V
Sbjct: 329 AAVVI-EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVS 387
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
QAL+ DR +G F+IPA S ++ S+L + I++P YDR+ VP ++R+T + GIT+LQR+
Sbjct: 388 QALKMDRNLG-PKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRI 446
Query: 359 AIGMILAIFTMIISGIIEDKR--RSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSE 416
G++ AIF+MI++GI+E R RS+ P G+ + +S WL PQL L+G E
Sbjct: 447 GTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGM-------TPMSVFWLSPQLILMGLCE 499
Query: 417 AFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476
AF II ++EF+ QFPE+MRSI SL + FA S+YL+ FL+++VH+F+ G DWL +
Sbjct: 500 AFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNK 559
Query: 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511
+LN G+LDYFYYL+A LG++N +F CA+ Y+YK
Sbjct: 560 NLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYK 594
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/532 (44%), Positives = 333/532 (62%), Gaps = 24/532 (4%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
M+ + A + ++ G TNFA LLGA +SD Y GR+KT+ +AS+ S LG++ ++LTA + +
Sbjct: 52 MEPVEAFNVYYLWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQ 111
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP C N C P QL LF GLG + IG+GGIRPC++ FG DQF+ TE G +
Sbjct: 112 LHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLK 171
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G+ SFFNWYY T T ++ S TV+VY+Q+ VSW G IP +M + +FF+G R Y
Sbjct: 172 GVASFFNWYYLTLTMVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVY 230
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDK 238
VKPEGS + +V VAA KKR LK+ T + P K + SKLP T QF+ LDK
Sbjct: 231 VKPEGSVFSGIARVIVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDK 290
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
AA++ D + S+G N WRL S+Q+VEEVK LIRV+P+W++ I+ VA+ Q T++VF
Sbjct: 291 AAVILDGD-LTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVF 349
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
QA + DR +G HF+IPAAS + S + + IW+PIY+ ++VP L R+ K +T+LQRM
Sbjct: 350 QATKMDRHMG-PHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLLQRM 406
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418
IG++ AI +M +G +E RR+ R ++ +S WL L L+G E+F
Sbjct: 407 GIGIVFAILSMFTAGFVEGVRRT-----------RATEMTQMSVFWLALPLILMGLCESF 455
Query: 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478
I +EF+ QFPE+MRSI SL + FA +NYL+ L++ VH+ + DWL +DL
Sbjct: 456 NFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDL 515
Query: 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKS 530
++G+LDYFYYL+A LG++N +F CA Y+YK +E N EKS
Sbjct: 516 DRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGSQ------IEDFNEEKS 561
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/509 (39%), Positives = 305/509 (59%), Gaps = 13/509 (2%)
Query: 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 64
TA + +SGT L+GAF++D Y GRY T+ GM +L+L+A++ L P
Sbjct: 66 TAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPG 125
Query: 65 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 124
+C N D+ C P Q A F L ++ +G GGI+PC +FGADQF+ N E+ K +S
Sbjct: 126 NC-NADT--CH-PNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSS 181
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 184
FFNW+YF+ +I+ TV+V++Q +V W WG G+P M ++ FF GSR Y +P
Sbjct: 182 FFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPG 241
Query: 185 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDKAAIM 242
GSPL QV VAA +K +K+PE+ L ++ I + KL HT + DKAA+
Sbjct: 242 GSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVE 301
Query: 243 TPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ 302
+ D IK DG +NPWRL S+ +VEE+K +I ++P+WA+ IV+ Q T V Q
Sbjct: 302 SQSDSIK-DGE-VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNT 359
Query: 303 SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGM 362
D+ +G +F+IP+AS ++F + + W P+YD+ I+P ++ T+ E G T LQRM IG+
Sbjct: 360 MDQHMGK-NFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGL 418
Query: 363 ILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIA 422
+++IF MI +G++E R + +Q++ +S W IPQ LIG +E FT I
Sbjct: 419 VVSIFAMITAGVLEVVRLDYVKTHN-AYDQKQ---IHMSIFWQIPQYLLIGCAEVFTFIG 474
Query: 423 EVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 482
++EF+Y Q P+ MRS+ +L+ A+ NYL+ L+++V + TK W+P++LN+G
Sbjct: 475 QLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGH 534
Query: 483 LDYFYYLVAALGLLNFGFFLLCAKWYKYK 511
LDYF+YL+A L LNF +L +K YKYK
Sbjct: 535 LDYFFYLLATLSFLNFLVYLWISKRYKYK 563
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/515 (41%), Positives = 333/515 (64%), Gaps = 23/515 (4%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
M + A TLIN +S TNFA ++GAF+SD+Y G++ T+ F S+A LGMLVL+ T+ +
Sbjct: 56 MDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPN 115
Query: 61 LHPPDC-GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGK 119
L PP C +Q +G C + QL L +GL L+ +G GGIR C++ F DQF+ +TE G+
Sbjct: 116 LRPPPCTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGR 175
Query: 120 QGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA 179
+G SFF+WYY T T ++S+T+++YVQ+++SW G IP + F + + F+G+R Y
Sbjct: 176 EGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYV 235
Query: 180 KVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINS-KLPHTGQFRCLDK 238
VKPEGS + +V VAA KKR + + H + + + S KL T QFR L+K
Sbjct: 236 FVKPEGSVFSGVFKVLVAAYKKRKARFTSG--IDYHQPLLETDLQSNKLVLTDQFRFLNK 293
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
A I+ D+ ++ WR +++++E++K +I +IPI+AS+I+ ++A+ QQQT+ V
Sbjct: 294 AVIVMNNDEAGNE-----EWRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVS 348
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
QAL+ D + T + IP AS + S+L + IW+P Y+ ++V ++ +TK+ GGI++LQ++
Sbjct: 349 QALKMDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKV 408
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418
IG I +I TM+ISGI+E KRR L+L+ G++ +S WL PQ L+GF + F
Sbjct: 409 GIGNIFSISTMLISGIVERKRRDLSLN---GVK--------MSVFWLTPQQVLMGFYQVF 457
Query: 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT-KGASTGDWLPED 477
TI+ EF+ KQ P NMRSIG SL ++G ++++YL+ ++S+VH T +G + WL +D
Sbjct: 458 TIVGLTEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQS--WLTDD 515
Query: 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 512
++K +LD FYY +AAL LNF FF CA+ Y+Y+
Sbjct: 516 IDKSKLDCFYYFIAALSTLNFIFFFWCARRYRYRN 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/509 (41%), Positives = 315/509 (61%), Gaps = 10/509 (1%)
Query: 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 65
A TL N F+GT++ LLGAF++D++ GR+ T+ FAS+ +GM +L+++A I L PP
Sbjct: 67 ANTLTN-FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPP 125
Query: 66 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 125
C ++ C QL+ L+ L L +G+GGIRPC +AFGADQF+ + + ++
Sbjct: 126 CKGEE--VCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNY 183
Query: 126 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEG 185
FNWYYF A+++++TV+V++Q +V W GLGIP MFLS F G +LY + P G
Sbjct: 184 FNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAG 243
Query: 186 SPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCIN--SKLPHTGQFRCLDKAAIMT 243
SP +QV VAA +KR L++ +P L N I+ KL HT LDKAAI+T
Sbjct: 244 SPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVT 303
Query: 244 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 303
ED +K G N WRLS++ +VEE+K +IR+ PI AS I+ A QQ T+ + QA
Sbjct: 304 EEDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTM 362
Query: 304 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMI 363
+R + N+ F+IPA S ++F+ + + I YDR+ V ++ T E GIT L RM IG +
Sbjct: 363 NRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFV 421
Query: 364 LAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAE 423
++I +++G +E KR+S+A+ GL + I +S LWLIPQ L G +EAF I
Sbjct: 422 ISIIATLVAGFVEVKRKSVAIEH--GLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGH 479
Query: 424 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE-DLNKGR 482
+EF+Y Q PE+MRS +L ++ +I NY++ L+++VH+F+ +WLP+ +LN+GR
Sbjct: 480 LEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGR 539
Query: 483 LDYFYYLVAALGLLNFGFFLLCAKWYKYK 511
L+YFY+L+ L +N ++L CAK Y YK
Sbjct: 540 LEYFYWLITVLQAVNLVYYLWCAKIYTYK 568
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/513 (38%), Positives = 304/513 (59%), Gaps = 14/513 (2%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
M++++A+ ++ +SGT L+GAF++D Y GRY T+ V GM +L+++A++
Sbjct: 63 MENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPG 122
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
L P C + A G Q A F L L+ +G GGI+PC +FGADQF+ E K+
Sbjct: 123 L-TPTCSGETCHATAG----QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKE 177
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
+SFFNW+YF MI+ +V+V++Q +V W WGLG+P M ++ FF GS Y
Sbjct: 178 SKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRL 237
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDK 238
KP GSPL +QV VA+ +K +K+PE+ L N ++ I + KL HT DK
Sbjct: 238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDK 297
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
AA+ T D + S+ W+L ++ +VEE+K LIR++PIWA+ IV+ Q T V
Sbjct: 298 AAVETESDNKGAAKSS--SWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
Q D+ +G +FKIP+AS ++F L + W P+YD++IVP ++ T E G T LQR+
Sbjct: 356 QGNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRI 414
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418
IG++++IF+M+ +GI+E R + + + E+ ++ W +PQ L+G +E F
Sbjct: 415 GIGLVISIFSMVSAGILEVARLNYVQTHNLYNEE----TIPMTIFWQVPQYFLVGCAEVF 470
Query: 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478
T I ++EF+Y Q P+ MRS+ +L+ A NYL+ FL+++V + T+ W+ ++L
Sbjct: 471 TFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNL 530
Query: 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511
N G LDYF++L+A L LNF +L AKWY YK
Sbjct: 531 NNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/507 (38%), Positives = 311/507 (61%), Gaps = 23/507 (4%)
Query: 8 TLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCG 67
+INI+ G+ N TL GAF+SD Y GR+ TL S+ASF+GM + +LTAA+ L P C
Sbjct: 62 NVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC- 120
Query: 68 NQDSGACPG-PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFF 126
D C P WQL LF+GLGL+ IGAGG+RPCN+AFGADQF+ +T+ GK + +FF
Sbjct: 121 -IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFF 179
Query: 127 NWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGS 186
NW+YF+FT A++I+LT +VY+Q+++SW G IP + LS F +G Y K EGS
Sbjct: 180 NWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGS 239
Query: 187 PLASTVQVFVAAIKKRHLKLPEEPWLTL---HNHIPKNCINSKLPHTGQFRCLDKAAIMT 243
A V+V AA KKR +K + + ++ P + K + R DKA+I+T
Sbjct: 240 VFADIVKVVTAACKKRKVKPGSDITFYIGPSNDGSPTTLVRDK----HRLRFFDKASIVT 295
Query: 244 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQS 303
+++ DG+A WRL S+Q+V+ +K + ++P+W + I ++ QQ Y + QA+Q
Sbjct: 296 NPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQM 355
Query: 304 DRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMI 363
D+ G +F++PA + SM+ L IWI +Y+ +I+P ++++T ++ +T+ R+ I +
Sbjct: 356 DKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--V 413
Query: 364 LAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA-ISSLSGLWLIPQLSLIGFSEAFTIIA 422
+ I MI++G E KRR+ AL + G+ +S +S + L+PQ +L G +EAF+ +A
Sbjct: 414 MGIICMIVAGFQEKKRRASAL--------KNGSFVSPVSIVMLLPQFALAGLTEAFSAVA 465
Query: 423 EVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL-PEDLNKG 481
+EF + PE+MR++ G++ F+ +I++Y+ LI+++ T+ WL +DLNK
Sbjct: 466 LMEFLTVRMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKN 524
Query: 482 RLDYFYYLVAALGLLNFGFFLLCAKWY 508
RL+ +++++A + + N +F L A Y
Sbjct: 525 RLENYFFIIAGIQVANLLYFRLFASRY 551
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 296453136 | 588 | nitrate transporter [Citrus trifoliata] | 1.0 | 0.904 | 0.975 | 0.0 | |
| 225456647 | 586 | PREDICTED: probable peptide/nitrate tran | 0.994 | 0.902 | 0.718 | 0.0 | |
| 224119132 | 586 | predicted protein [Populus trichocarpa] | 0.968 | 0.878 | 0.751 | 0.0 | |
| 225456645 | 586 | PREDICTED: probable peptide/nitrate tran | 0.994 | 0.902 | 0.709 | 0.0 | |
| 297734038 | 1053 | unnamed protein product [Vitis vinifera] | 0.975 | 0.492 | 0.703 | 0.0 | |
| 449441051 | 589 | PREDICTED: probable peptide/nitrate tran | 0.992 | 0.896 | 0.693 | 0.0 | |
| 359491749 | 577 | PREDICTED: probable peptide/nitrate tran | 0.962 | 0.887 | 0.689 | 0.0 | |
| 224059970 | 596 | predicted protein [Populus trichocarpa] | 0.983 | 0.877 | 0.671 | 0.0 | |
| 225452684 | 585 | PREDICTED: probable peptide/nitrate tran | 0.992 | 0.902 | 0.672 | 0.0 | |
| 224119140 | 570 | predicted protein [Populus trichocarpa] | 0.966 | 0.901 | 0.658 | 0.0 |
| >gi|296453136|gb|ADH21397.1| nitrate transporter [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/532 (97%), Positives = 526/532 (98%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITATTLINIF+GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL+LTAAISK
Sbjct: 57 MKSITATTLINIFNGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLTLTAAISK 116
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPPDCGNQDSGAC GPTPWQLAFLF GLGLMVIGAGGIRPCNLAFGADQFNPNTESGK+
Sbjct: 117 LHPPDCGNQDSGACSGPTPWQLAFLFIGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKK 176
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY K
Sbjct: 177 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYVK 236
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VKP+GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCL+KAA
Sbjct: 237 VKPDGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLEKAA 296
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
IMTPEDQIKSDGSAINPWRLSS QKVEEVKVLIRVIPIWASAIVYYVA VQQQTYVVFQA
Sbjct: 297 IMTPEDQIKSDGSAINPWRLSSKQKVEEVKVLIRVIPIWASAIVYYVASVQQQTYVVFQA 356
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI
Sbjct: 357 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 416
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420
GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI
Sbjct: 417 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 476
Query: 421 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480
IAEVEFYYKQFPENMRSIGGSL FVGFAISNYL+GFLISMVHRFTKGASTGDWLPEDLNK
Sbjct: 477 IAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNK 536
Query: 481 GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV 532
GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEK+NPEKSPV
Sbjct: 537 GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKVNPEKSPV 588
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456647|ref|XP_002270812.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/530 (71%), Positives = 454/530 (85%), Gaps = 1/530 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITATT +N+F+G+TNFATL+GAFL DTYFGRY TLGFAS++SFLGMLV++LTAA+ K
Sbjct: 54 MKSITATTFVNVFNGSTNFATLIGAFLCDTYFGRYTTLGFASISSFLGMLVITLTAAVQK 113
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
+HPP CG D+G C GPT Q+AFL +G GL+VIGA GIRPCNLAFGADQFNP TESGK+
Sbjct: 114 MHPPHCGTTDTGTCIGPTAGQMAFLLSGFGLLVIGAAGIRPCNLAFGADQFNPETESGKR 173
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI+SFFNWYYFT+TFAMM+SLTVIVYVQSDVSW+ GL IP +M LSCA+FF+G+R+Y K
Sbjct: 174 GISSFFNWYYFTYTFAMMVSLTVIVYVQSDVSWSLGLAIPTLLMLLSCALFFMGTRIYVK 233
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VKPEGSPL + QV VAA+KKR L+LP +PWL+L NHIP N INSKLPHT QFR L K A
Sbjct: 234 VKPEGSPLKNVAQVIVAAVKKRRLELPGQPWLSLFNHIPANSINSKLPHTDQFRFLSKGA 293
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+TPE QI SDGSA NPWRLSSMQKVEEVK +IRVIPIWA+ I+YYVALVQQ TYVVFQA
Sbjct: 294 ILTPEVQINSDGSAANPWRLSSMQKVEEVKCVIRVIPIWAAGIIYYVALVQQSTYVVFQA 353
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRR+G+T FKIPAASY +F+ML LTIWIPIYD+IIVP L+RLT KE GIT+LQ+M I
Sbjct: 354 LQSDRRLGSTGFKIPAASYTVFTMLSLTIWIPIYDQIIVPLLRRLTGKEVGITLLQKMGI 413
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
GM+LA+ TMI+S ++E++RR+LAL++ VG+E RRGAISSLSG+WL+PQL+LIG SE T
Sbjct: 414 GMVLAVITMILSALVEERRRTLALTKATVGIEARRGAISSLSGMWLVPQLTLIGISEGLT 473
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
II +VEF+YKQFPENMRS G+ F G A SNYL+ FL+S+VH+ T G +TG+WLPEDLN
Sbjct: 474 IIGQVEFFYKQFPENMRSFAGAFLFCGIAFSNYLSSFLVSIVHQSTGGTATGNWLPEDLN 533
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 529
KGRLDYFYYLVAALG++N +FL CAKWYKYK S + EV++EK+ P+K
Sbjct: 534 KGRLDYFYYLVAALGMVNLLYFLACAKWYKYKDSEESPLEVSLEKMQPQK 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119132|ref|XP_002317993.1| predicted protein [Populus trichocarpa] gi|222858666|gb|EEE96213.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/519 (75%), Positives = 454/519 (87%), Gaps = 4/519 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITATTLINIF+GTTN ATLLGAFL DTYFGRYKTL FAS+ASFLGM+V++LTAAISK
Sbjct: 53 MKSITATTLINIFNGTTNIATLLGAFLCDTYFGRYKTLAFASIASFLGMVVITLTAAISK 112
Query: 61 LHPPDC--GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESG 118
LHPP C G QD+ ACP TPWQ+ FL +GLGL+VIG GGIRPCNLAFGADQFNP TESG
Sbjct: 113 LHPPQCASGTQDTAACPALTPWQMTFLLSGLGLLVIGGGGIRPCNLAFGADQFNPQTESG 172
Query: 119 KQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 178
++GITSFFNWYYFTFTFAMMISLT++VYVQSD++WAWGL IPAF+MF SC +FF GSR+Y
Sbjct: 173 RKGITSFFNWYYFTFTFAMMISLTIVVYVQSDINWAWGLAIPAFLMFFSCVLFFAGSRIY 232
Query: 179 AKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDK 238
KVKP+GSPL S VQV VAAIKKR L+LPE+PWL+L NHIP INS LP+T QFR LDK
Sbjct: 233 VKVKPDGSPLTSVVQVIVAAIKKRKLELPEQPWLSLFNHIPARSINSNLPYTDQFRFLDK 292
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
AAI+T EDQI S+GS PWRL S+Q+VEEVK L+RVIPIWASA++YY+ L+QQQTYVVF
Sbjct: 293 AAILTTEDQIMSNGSTATPWRLCSLQQVEEVKCLLRVIPIWASALLYYIGLIQQQTYVVF 352
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
QALQS+R +GNT+FKIPAASYAIFSMLGLTIWIPIYDR+IVP L + TKKEGGITILQ+M
Sbjct: 353 QALQSNRGLGNTNFKIPAASYAIFSMLGLTIWIPIYDRLIVPWLAKHTKKEGGITILQKM 412
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA-ISSLSGLWLIPQLSLIGFSEA 417
+GM L I TM+ISGI+E++RR+LA+S P+G++ R +SSLS LWL PQL LIG SEA
Sbjct: 413 GVGMALGIVTMLISGIVEERRRALAISSPIGVDSRSNVNVSSLSALWLAPQLILIGISEA 472
Query: 418 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477
FTIIA++E YYKQFPENMRSIGGSL+FVG A+S+YL+ FLISMVH+ TK ++ GDWLPED
Sbjct: 473 FTIIAQIELYYKQFPENMRSIGGSLSFVGVAVSSYLSAFLISMVHQITKKSACGDWLPED 532
Query: 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 516
LNKGRLD FYYLVAALG++N G+F++CAKWYKYKG+ DG
Sbjct: 533 LNKGRLDLFYYLVAALGVINMGYFIVCAKWYKYKGN-DG 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456645|ref|XP_002266777.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/530 (70%), Positives = 454/530 (85%), Gaps = 1/530 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITA TLINIF GTTN TL+GAFL DTYFGRYKTLGFA+VASF+GMLV++LTA ISK
Sbjct: 54 MKSITAVTLINIFYGTTNLGTLVGAFLCDTYFGRYKTLGFATVASFMGMLVITLTALISK 113
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP C + +G C GPT WQ+AFL G GL+VIGA GIRPCNLAFGADQFNP TESGK+
Sbjct: 114 LHPPHCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGADQFNPITESGKR 173
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G++SFFNW+YFT T AMMISLT+++YVQSDVSWA GL IP F+M L+C +FF+G+R+Y K
Sbjct: 174 GLSSFFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLACVLFFMGTRIYVK 233
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
++P+GSPL S VQV VAA +KR LKLPE+PWLTL +H+P N INSKLP+T QFR LDK A
Sbjct: 234 LEPKGSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLPYTDQFRFLDKGA 293
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+TPEDQI S+G A +PWRLSS+Q+VEEVK L+RVIPIWASAI+YYVAL QQQTY VFQ+
Sbjct: 294 IITPEDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVALAQQQTYTVFQS 353
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDR +G+++FKIPAASY+IFSMLGL IWIPIYDRI+VP LQR T KEGGIT+LQ+M +
Sbjct: 354 LQSDRHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGKEGGITVLQKMGV 413
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
GM L+I TM++S +E +RR+LAL P + ++ RRGAISS+SGLW IPQL+L+G SEAFT
Sbjct: 414 GMFLSIVTMLVSAFVEHQRRTLALCEPTLRIDPRRGAISSMSGLWFIPQLTLVGVSEAFT 473
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
+IA+VEF+YKQFPE+MRS+GGS +F+G A+S+YL+ FL+S VHR T GA++G+WLPEDLN
Sbjct: 474 VIAQVEFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAGAASGNWLPEDLN 533
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 529
KGRLDYFYYLVAALG++N G+FLLCAKWYKYKGS EV ME++ EK
Sbjct: 534 KGRLDYFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVESEK 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734038|emb|CBI15285.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/529 (70%), Positives = 447/529 (84%), Gaps = 10/529 (1%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITA TLINIF GTTN TL+GAFL DTYFGRYKTLGFA+VASF+GMLV++LTA ISK
Sbjct: 97 MKSITAVTLINIFYGTTNLGTLVGAFLCDTYFGRYKTLGFATVASFMGMLVITLTALISK 156
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP C + +G C GPT WQ+AFL G GL+VIGA GIRPCNLAFGADQFNP TESGK+
Sbjct: 157 LHPPHCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGADQFNPITESGKR 216
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G++SFFNW+YFT T AMMISLT+++YVQSDVSWA GL IP F+M L+C +FF+G+R+Y K
Sbjct: 217 GLSSFFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLACVLFFMGTRIYVK 276
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
++P+GSPL S VQV VAA +KR LKLPE+PWLTL +H+P N INSKLP+T QFR LDK A
Sbjct: 277 LEPKGSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLPYTDQFRFLDKGA 336
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+TPEDQI S+G A +PWRLSS+Q+VEEVK L+RVIPIWASAI+YYVAL QQQTY VFQ+
Sbjct: 337 IITPEDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVALAQQQTYTVFQS 396
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDR +G+++FKIPAASY+IFSMLGL IWIPIYDRI+VP LQR T KEGGIT+LQ+M +
Sbjct: 397 LQSDRHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGKEGGITVLQKMGV 456
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420
GM L+I TM++S +E +RR+LAL AISS+SGLW IPQL+L+G SEAFT+
Sbjct: 457 GMFLSIVTMLVSAFVEHQRRTLALC----------AISSMSGLWFIPQLTLVGVSEAFTV 506
Query: 421 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480
IA+VEF+YKQFPE+MRS+GGS +F+G A+S+YL+ FL+S VHR T GA++G+WLPEDLNK
Sbjct: 507 IAQVEFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAGAASGNWLPEDLNK 566
Query: 481 GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEK 529
GRLDYFYYLVAALG++N G+FLLCAKWYKYKGS EV ME++ EK
Sbjct: 567 GRLDYFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVESEK 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441051|ref|XP_004138297.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus] gi|449477593|ref|XP_004155066.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/538 (69%), Positives = 448/538 (83%), Gaps = 10/538 (1%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MK+ITATTL+NIF G+TNF+TL GAFL DTYFGRYKTLG+AS+AS +GM+VL+LTA I K
Sbjct: 55 MKNITATTLMNIFHGSTNFSTLFGAFLCDTYFGRYKTLGYASIASLMGMVVLTLTATIEK 114
Query: 61 LHPPDCGNQDSG-ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGK 119
LHPPDCG +G AC PT WQ+AFL GLGL+VIGAGGIRPCNLAFGADQFNPNT SGK
Sbjct: 115 LHPPDCGKGSAGGACLEPTSWQIAFLLFGLGLLVIGAGGIRPCNLAFGADQFNPNTASGK 174
Query: 120 QGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA 179
GI SFFNWYYFTFTFAMMISLT+IVYVQ++VSWAWGL IPAF+MFLSCA+FF+GS +Y
Sbjct: 175 LGINSFFNWYYFTFTFAMMISLTIIVYVQTEVSWAWGLAIPAFLMFLSCALFFMGSWIYV 234
Query: 180 KVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 239
K++P+GSP S ++V +AA+KKR L LP++ W +L NHIP N INSKLP+T QF DKA
Sbjct: 235 KLEPDGSPFTSVMRVLMAALKKRQLPLPDQQWPSLFNHIPSNSINSKLPYTNQFSFFDKA 294
Query: 240 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQ 299
AI+T ED+ KSDGSA +PW L S Q+VEEVK L+RVIPIW +AI+Y+VA QQQTY VFQ
Sbjct: 295 AIITSEDKFKSDGSAADPWTLCSTQQVEEVKCLVRVIPIWGAAIIYHVATTQQQTYAVFQ 354
Query: 300 ALQSDRRV--GNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ 356
ALQSDRR+ GNTH FKIPAASY IF+M+GLTIWIP YDRI+VP L+R+T +EGGIT+LQ
Sbjct: 355 ALQSDRRLFFGNTHYFKIPAASYTIFTMIGLTIWIPFYDRILVPSLRRITAREGGITLLQ 414
Query: 357 RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQ-RRGAISSLSGLWLIPQLSLIGFS 415
+M GM +AI TM IS ++E KRR+LAL++P+ E RRG+ISS+S LWL+PQL+LIG S
Sbjct: 415 KMGFGMGIAIITMFISALVEQKRRNLALTQPLCEETGRRGSISSMSALWLVPQLTLIGLS 474
Query: 416 EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 475
EAFT+IA+VEFYYK+FPENMRSIGGSL+FVG A+SNYL+GF++++VHR T G WLP
Sbjct: 475 EAFTVIAQVEFYYKEFPENMRSIGGSLSFVGLALSNYLSGFMVTVVHRLT----AGKWLP 530
Query: 476 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD-GAPEVAMEKLNPEKSPV 532
EDLNKGRLDYFY+LV+ L +N G+FLLC+KWYKYKGSG G E+ K EK+ V
Sbjct: 531 EDLNKGRLDYFYFLVSGLEAVNLGYFLLCSKWYKYKGSGSHGVDEMDFGKTEFEKTVV 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491749|ref|XP_002270558.2| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/519 (68%), Positives = 431/519 (83%), Gaps = 7/519 (1%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITATTLINIF+GTTNFATL GAFLSDTYFGRYKTLGFAS++SF+G+LV++LTAAI
Sbjct: 65 MKSITATTLINIFNGTTNFATLPGAFLSDTYFGRYKTLGFASISSFMGLLVIALTAAIPN 124
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP+CG + C G T WQ+AFL TG GL+VIGAGGIRPCNLAFGADQFNP TESGK+
Sbjct: 125 LHPPECGK--ASRCIGATAWQMAFLLTGFGLLVIGAGGIRPCNLAFGADQFNPKTESGKR 182
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWY+FT TFA M+SLT IVYVQS VSW GLGIPA +M LSC +FF+G+++Y K
Sbjct: 183 GIDSFFNWYFFTLTFAQMVSLTAIVYVQSKVSWGIGLGIPALLMLLSCVVFFMGTKIYVK 242
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VKP GSP+ S QV V A+KKR LKLPE+PWL+L ++IP N INSKLP+T QFR LDKAA
Sbjct: 243 VKPTGSPMTSVAQVIVVAVKKRRLKLPEQPWLSLFSYIPPNSINSKLPYTDQFRFLDKAA 302
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
+++PEDQ+ DGSA PWRL SMQ+VEEVK ++RVIPIW+SAI+Y+ A+VQQ TY VFQA
Sbjct: 303 VLSPEDQLNPDGSAAYPWRLCSMQQVEEVKCIMRVIPIWSSAIIYHCAIVQQHTYAVFQA 362
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQS+R VGN+ F+IPAASY +FSML LTIW+PIYDRI+VP L+R+T KE GITILQR+ I
Sbjct: 363 LQSNRYVGNSKFQIPAASYTVFSMLSLTIWVPIYDRIVVPFLRRITGKEAGITILQRIGI 422
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G+ L++ T ++S ++E+ RR +RP +G+ RRG ISS+SG WLIPQL+L G +EAFT
Sbjct: 423 GIFLSVLTSLVSALVEEWRR----TRPIIGVYPRRGGISSMSGFWLIPQLTLAGLAEAFT 478
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
I +VEFYYKQFPENMRSI GS F G A S+Y++G L+S+VHR T GA TG+WLPEDLN
Sbjct: 479 AIGQVEFYYKQFPENMRSIAGSFFFCGMAASSYVSGLLVSIVHRTTAGAKTGNWLPEDLN 538
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 518
KGRLDYFYYLVA+LG++N G+FL+CAKWY YKGS P
Sbjct: 539 KGRLDYFYYLVASLGVINLGYFLVCAKWYTYKGSYQQHP 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059970|ref|XP_002300021.1| predicted protein [Populus trichocarpa] gi|222847279|gb|EEE84826.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/526 (67%), Positives = 435/526 (82%), Gaps = 3/526 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKS+ ATTL+N+F+GT+N A L+GA+LSDTYFGRY TLGFASV SFLGM+VL LTAAIS
Sbjct: 73 MKSVKATTLLNVFNGTSNLAPLIGAYLSDTYFGRYWTLGFASVFSFLGMVVLMLTAAIST 132
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
+HPP C C GPT WQLAFL +G +VIGAGGIRPCNLAFGADQFNPNTESGK+
Sbjct: 133 MHPPKCA--PGAVCAGPTSWQLAFLLSGFAFLVIGAGGIRPCNLAFGADQFNPNTESGKR 190
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GITSFFNWYYFTFTFA+MIS+T IVYVQS+VSWA GLGIPAF+M LSC MFF+G+R+Y
Sbjct: 191 GITSFFNWYYFTFTFAVMISVTGIVYVQSNVSWAIGLGIPAFLMLLSCVMFFVGTRIYVI 250
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VKP+GSP+ S VQV VAA KKR LK+P+ ++L N+IP INSKLP T QFRCLDKAA
Sbjct: 251 VKPQGSPITSIVQVLVAATKKRGLKVPDNSAMSLFNYIPAKSINSKLPSTEQFRCLDKAA 310
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+T E+QI DG+A NPW+L S+Q+VEEVK L+R+IP+W+++I+Y + L+QQQTY VFQA
Sbjct: 311 IITDENQINLDGTAANPWKLCSVQQVEEVKCLLRIIPVWSTSILYQIPLLQQQTYAVFQA 370
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQ DRR+G+T FK+PAA+Y IF+ML LTIWIP+YDRIIVP LQRLT K+GGIT+LQRM I
Sbjct: 371 LQMDRRLGSTSFKVPAATYIIFTMLTLTIWIPLYDRIIVPFLQRLTGKDGGITLLQRMGI 430
Query: 361 GMILAIFTMIISGIIEDKRRSLALSR-PVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
GMILAI ++SG++E+ RR +AL+R P+G + G+ISS+SG+WLIPQL+L G SE F
Sbjct: 431 GMILAILCTVVSGLVEENRRHIALTRPPLGQTNKGGSISSMSGMWLIPQLALSGLSEGFN 490
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
IA++EFYYKQFPENMRSI GS F G A++NYL+G L+S+VH+ T G+ TGDWL +DLN
Sbjct: 491 YIAQIEFYYKQFPENMRSIAGSAFFAGGALANYLSGVLVSIVHQITSGSKTGDWLDDDLN 550
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKL 525
KG+LDYFYY++A LG+LNFG+FLLCAKWY+YK + D +A + +
Sbjct: 551 KGKLDYFYYVIAGLGILNFGYFLLCAKWYRYKDADDSTVGMATKGI 596
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452684|ref|XP_002276806.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera] gi|296087781|emb|CBI35037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/534 (67%), Positives = 431/534 (80%), Gaps = 6/534 (1%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
+KS+TA TLINIF+GTTN A LLGAFLSD+YFGR+KTL AS+ S GM V+ LTAAISK
Sbjct: 56 IKSVTAATLINIFNGTTNMAPLLGAFLSDSYFGRFKTLALASICSLSGMTVIMLTAAISK 115
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP CG +++ C GPT QLAFL TG GL++IGAGGIRPCNLAFGADQFNP TESGK+
Sbjct: 116 LHPPHCGTKETELCRGPTTSQLAFLLTGFGLLIIGAGGIRPCNLAFGADQFNPATESGKR 175
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWYYFTFTFA+MIS T IVYVQS+VSWA GLGIP+ +MF+SC +FF GSR+Y K
Sbjct: 176 GINSFFNWYYFTFTFAVMISGTFIVYVQSNVSWALGLGIPSCLMFVSCVLFFAGSRIYVK 235
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VKP GSPL QV VAA KKR+ KLP+ P L+L +H+P N +NSKLPHT QFR LDK+A
Sbjct: 236 VKPRGSPLTGVAQVLVAASKKRYFKLPDHPELSLFSHVPTNYMNSKLPHTDQFRFLDKSA 295
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+T EDQI +DGSA NPWRL SMQ+VEEVK L+RVIPIWAS+I+Y+VA+VQQ TY V QA
Sbjct: 296 IITMEDQINTDGSASNPWRLCSMQQVEEVKCLMRVIPIWASSIIYHVAIVQQHTYAVLQA 355
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDR +G+ F++PAASY+IFSML LTIWIPIYDRI++P L +LT KE GIT+LQRM
Sbjct: 356 LQSDRHLGS--FEVPAASYSIFSMLSLTIWIPIYDRIVIPFLHKLTGKEDGITLLQRMGT 413
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G++L++ TM++S +IE++RR+ A +RP +G + GAISS+S WLIPQL L G SEAF
Sbjct: 414 GIVLSVATMLVSAVIEEQRRTFARTRPTIGTAPKGGAISSMSASWLIPQLILAGLSEAFN 473
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT-KGASTGDWLPEDL 478
I ++EFYYKQFPENMRSI GS F G A SNYL+GFL+S+VH+ T GA GDWLPEDL
Sbjct: 474 SIGQIEFYYKQFPENMRSIAGSFFFCGIAGSNYLSGFLVSVVHQITLNGARGGDWLPEDL 533
Query: 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV 532
NKG+LD FYY++AALG +NF +FL+C+KWY+YKG GD EVAME K V
Sbjct: 534 NKGKLDCFYYMIAALGAVNFAYFLVCSKWYRYKG-GDRV-EVAMETKGSRKHVV 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119140|ref|XP_002317995.1| predicted protein [Populus trichocarpa] gi|222858668|gb|EEE96215.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/516 (65%), Positives = 426/516 (82%), Gaps = 2/516 (0%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITA T+I +F+GT N TL+GAFL DTYFGRYKT+GFA+VASFLG+L + LTAAISK
Sbjct: 55 MKSITAATIITVFNGTANLGTLIGAFLCDTYFGRYKTIGFATVASFLGLLAIQLTAAISK 114
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP C ++S C GPT Q+AFL G LM+IGAGGIRPCNLAFGADQF+P TESGK+
Sbjct: 115 LHPPHCA-KESITCIGPTGGQIAFLLAGFILMIIGAGGIRPCNLAFGADQFDPETESGKR 173
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G+ SFFNWY+FTFTFA MISLT+IVYVQS+VSW GLGIPA +M +SC ++++G++LY K
Sbjct: 174 GVNSFFNWYFFTFTFAQMISLTLIVYVQSNVSWPIGLGIPAILMLISCLVYYMGTKLYVK 233
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VK GSP+ S +V V A+KKR LK ++PWL+L N+IP INSKL +T QFR LDKAA
Sbjct: 234 VKATGSPMTSVARVIVVAVKKRKLKPVDQPWLSLFNYIPPKSINSKLSYTDQFRFLDKAA 293
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
IMT +DQ+ DGS NPW+L S+Q+VEEVK L RVIP+W +AI+YYVA+VQQ TYVVFQA
Sbjct: 294 IMTHQDQVNPDGSPANPWKLCSLQQVEEVKCLFRVIPVWTAAIIYYVAVVQQHTYVVFQA 353
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
+QS+RR+GN++F IPAASY +F ML ++I+IPIYDRI+VP L+R+T KE GITILQR+ +
Sbjct: 354 VQSNRRLGNSNFAIPAASYIVFLMLSMSIFIPIYDRILVPFLRRITGKEAGITILQRIGV 413
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G+ L I TM++SG++E+KRR++AL++P +G R+GAISS+S LWLIPQLSL G +EAF
Sbjct: 414 GIFLTIVTMLVSGLVEEKRRTIALTKPTLGNAPRKGAISSMSALWLIPQLSLSGIAEAFG 473
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
I +VEFYYKQFPENMRSIGGSL + G A S+Y + LI++VH+ T GA+TG+WL EDLN
Sbjct: 474 SIGQVEFYYKQFPENMRSIGGSLFYCGMAASSYFSSLLITVVHQTTNGAATGNWLSEDLN 533
Query: 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 515
KGRLDY+YY++AALG+LN G+FLLCA+WYKYKG D
Sbjct: 534 KGRLDYYYYMIAALGVLNMGYFLLCARWYKYKGGKD 569
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.968 | 0.836 | 0.567 | 1.2e-166 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.956 | 0.867 | 0.566 | 8.6e-159 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.943 | 0.809 | 0.466 | 1.6e-125 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.934 | 0.862 | 0.445 | 7.3e-114 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.936 | 0.835 | 0.407 | 1.3e-98 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.932 | 0.870 | 0.388 | 3.2e-97 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.936 | 0.873 | 0.375 | 1.8e-94 | |
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.875 | 0.833 | 0.386 | 6.3e-92 | |
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.928 | 0.813 | 0.364 | 4.5e-91 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.937 | 0.852 | 0.369 | 1.2e-90 |
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
Identities = 293/516 (56%), Positives = 388/516 (75%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
+KSITA T+IN FSGT NF T + AFL DTYFGRYKTL A +A FLG V+ LTAA+ +
Sbjct: 81 LKSITAATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQ 140
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP CG C GP+ Q+AFL GLG +V+GAGGIRPCNLAFGADQFNP +ESGK+
Sbjct: 141 LHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKR 200
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWY+FTFTFA ++SLT++VYVQS+VSW GL IPA +MFL+C +FF G +LY K
Sbjct: 201 GIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVK 260
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
+K GSPLA QV AIKKR LK ++PWL L+N+ P NSKL +T QFR LDKAA
Sbjct: 261 IKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAA 320
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+TPED+++ DG +PW+L +MQ+VEEVK ++RV+PIW ++ +YY+ + QQ TY VFQA
Sbjct: 321 ILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQA 380
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRR+G+ F IPAA+Y +F M G+T++I +YDR++VP ++R+T + GIT+LQR+
Sbjct: 381 LQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGT 440
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G+ A +++++G +E++RR+ AL++P +G+ R+G ISS+S +WLIPQLSL G +EAF
Sbjct: 441 GIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFA 500
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
I ++EFYYKQFPENMRS GS+ +VG +S+YL FLI+ VHR T+ +S G+WL EDLN
Sbjct: 501 AIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLN 560
Query: 480 KGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYKGSGD 515
KGRLD FY+++A ++WY+YKGS D
Sbjct: 561 KGRLDLFYFMIAGILAVNFAYFLVMSRWYRYKGSDD 596
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 290/512 (56%), Positives = 379/512 (74%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
MKSITA ++NI+ GT+NF T++ AFL D+YFGRYKTL FA +A FLG + + LTA I
Sbjct: 57 MKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHP 116
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP C + C GP+ Q+ FL + L+VIGAGGIRPCNL FGADQF+P T+ GK+
Sbjct: 117 LHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKR 176
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
GI SFFNWY+FTFTFA M+SLT+IVYVQS+VSW+ GL IPA +M L C +FF GS+LY K
Sbjct: 177 GIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVK 236
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
VK GSP+ S +V V AIKKR LK P P L+N+I + NSKL HT QFR LDK+A
Sbjct: 237 VKASGSPIHSITRVIVVAIKKRRLK-PVGP-NELYNYIASDFKNSKLGHTEQFRFLDKSA 294
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I T +D++ DGS ++ W+L SMQ+VEEVK +IRV+P+W SA ++Y+A +QQ TY +FQ+
Sbjct: 295 IQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQS 354
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
LQSDRR+G F+IPA SY +F MLG+TI+IPIYDR++VP L++ T ++GGIT LQR+
Sbjct: 355 LQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGA 414
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT 419
G+ L I +M++S I+E RR +AL++P +GL R+GAISS+SG+WLIPQL L+G ++A
Sbjct: 415 GLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALA 474
Query: 420 IIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479
+ ++EFYYKQFPENMRS GSL + G +++YL+ FL+S VH T+G S G WLPEDLN
Sbjct: 475 GVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLN 534
Query: 480 KGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 511
KGRL+YFY+LVA + WY+YK
Sbjct: 535 KGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYK 566
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 240/515 (46%), Positives = 341/515 (66%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
++ + A +INI+SG TN L+GA++SDTY GR+KT+ FAS A+ LG++ ++LTA+ +
Sbjct: 89 LEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQ 148
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHP C +QD +C GP Q+ L GL + +G+GGIRPC++ FG DQF+ TE G +
Sbjct: 149 LHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVK 208
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G+ SFFNWYY TFT ++I+ TV+VY+Q VSW G IP +M L+ MFF G + Y
Sbjct: 209 GVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVY 268
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDK 238
VKPEGS + QV VAA KKR LKLP E T+ + P K+ + SKL + QFRCLDK
Sbjct: 269 VKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDK 328
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
AA++ E + +G + WRL S+Q+VEEVK LIR++PIW++ I+ A+ Q T+ V
Sbjct: 329 AAVVI-EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVS 387
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
QAL+ DR +G F+IPA S ++ S+L + I++P YDR+ VP ++R+T + GIT+LQR+
Sbjct: 388 QALKMDRNLG-PKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRI 446
Query: 359 AIGMILAIFTMIISGIIEDKRR--SLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSE 416
G++ AIF+MI++GI+E RR S+ P G+ + +S WL PQL L+G E
Sbjct: 447 GTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGM-------TPMSVFWLSPQLILMGLCE 499
Query: 417 AFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476
AF II ++EF+ QFPE+MRSI SL + FA S+YL+ FL+++VH+F+ G DWL +
Sbjct: 500 AFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNK 559
Query: 477 DLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 511
+LN G+LDYFYYL+A CA+ Y+YK
Sbjct: 560 NLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYK 594
|
|
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 230/516 (44%), Positives = 322/516 (62%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
M+ + A + ++ G TNFA LLGA +SD Y GR+KT+ +AS+ S LG++ ++LTA + +
Sbjct: 52 MEPVEAFNVYYLWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQ 111
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
LHPP C N C P QL LF GLG + IG+GGIRPC++ FG DQF+ TE G +
Sbjct: 112 LHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLK 171
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
G+ SFFNWYY T T ++ S TV+VY+Q+ VSW G IP +M + +FF+G R Y
Sbjct: 172 GVASFFNWYYLTLTMVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVY 230
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSKLPHTGQFRCLDK 238
VKPEGS + +V VAA KKR LK+ T + P K + SKLP T QF+ LDK
Sbjct: 231 VKPEGSVFSGIARVIVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDK 290
Query: 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
AA++ D + S+G N WRL S+Q+VEEVK LIRV+P+W++ I+ VA+ Q T++VF
Sbjct: 291 AAVILDGD-LTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVF 349
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
QA + DR +G HF+IPAAS + S + + IW+PIY+ ++VP L R+ K +T+LQRM
Sbjct: 350 QATKMDRHMG-PHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLLQRM 406
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418
IG++ AI +M +G +E RR+ A ++ +S WL L L+G E+F
Sbjct: 407 GIGIVFAILSMFTAGFVEGVRRTRATE-----------MTQMSVFWLALPLILMGLCESF 455
Query: 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478
I +EF+ QFPE+MRSI SL + FA +NYL+ L++ VH+ + DWL +DL
Sbjct: 456 NFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDL 515
Query: 479 NKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK-GS 513
++G+LDYFYYL+A CA Y+YK GS
Sbjct: 516 DRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGS 551
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 208/510 (40%), Positives = 310/510 (60%)
Query: 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPD 65
A TL N F+GT++ LLGAF++D++ GR+ T+ FAS+ +GM +L+++A I L PP
Sbjct: 67 ANTLTN-FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPP 125
Query: 66 CGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSF 125
C ++ C QL+ L+ L L +G+GGIRPC +AFGADQF+ + + ++
Sbjct: 126 CKGEE--VCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNY 183
Query: 126 FNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEG 185
FNWYYF A+++++TV+V++Q +V W GLGIP MFLS F G +LY + P G
Sbjct: 184 FNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAG 243
Query: 186 SPLASTVQVFVAAIKKRHLKLPEEPWLTLHNH---IPKNCINSKLPHTGQFRCLDKAAIM 242
SP +QV VAA +KR L++ +P L N P + + KL HT LDKAAI+
Sbjct: 244 SPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPIS-LGGKLTHTKHMSFLDKAAIV 302
Query: 243 TPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ 302
T ED +K G N WRLS++ +VEE+K +IR+ PI AS I+ A QQ T+ + QA
Sbjct: 303 TEEDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKT 361
Query: 303 SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGM 362
+R + N+ F+IPA S ++F+ + + I YDR+ V ++ T E GIT L RM IG
Sbjct: 362 MNRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGF 420
Query: 363 ILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIA 422
+++I +++G +E KR+S+A+ GL + I +S LWLIPQ L G +EAF I
Sbjct: 421 VISIIATLVAGFVEVKRKSVAIEH--GLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIG 478
Query: 423 EVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED-LNKG 481
+EF+Y Q PE+MRS +L ++ +I NY++ L+++VH+F+ +WLP++ LN+G
Sbjct: 479 HLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRG 538
Query: 482 RLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 511
RL+YFY+L+ CAK Y YK
Sbjct: 539 RLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 198/509 (38%), Positives = 298/509 (58%)
Query: 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 64
TA + +SGT L+GAF++D Y GRY T+ GM +L+L+A++ L P
Sbjct: 66 TAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPG 125
Query: 65 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 124
+C N D+ C P Q A F L ++ +G GGI+PC +FGADQF+ N E+ K +S
Sbjct: 126 NC-NADT--CH-PNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSS 181
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 184
FFNW+YF+ +I+ TV+V++Q +V W WG G+P M ++ FF GSR Y +P
Sbjct: 182 FFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPG 241
Query: 185 GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINS--KLPHTGQFRCLDKAAIM 242
GSPL QV VAA +K +K+PE+ L ++ I KL HT + DKAA+
Sbjct: 242 GSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVE 301
Query: 243 TPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ 302
+ D IK DG +NPWRL S+ +VEE+K +I ++P+WA+ IV+ Q T V Q
Sbjct: 302 SQSDSIK-DGE-VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNT 359
Query: 303 SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGM 362
D+ +G +F+IP+AS ++F + + W P+YD+ I+P ++ T+ E G T LQRM IG+
Sbjct: 360 MDQHMGK-NFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGL 418
Query: 363 ILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIA 422
+++IF MI +G++E R + +Q++ +S W IPQ LIG +E FT I
Sbjct: 419 VVSIFAMITAGVLEVVRLDYVKTHNA-YDQKQ---IHMSIFWQIPQYLLIGCAEVFTFIG 474
Query: 423 EVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 482
++EF+Y Q P+ MRS+ +L+ A+ NYL+ L+++V + TK W+P++LN+G
Sbjct: 475 QLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGH 534
Query: 483 LDYFYYLVAAXXXXXXXXXXXCAKWYKYK 511
LDYF+YL+A +K YKYK
Sbjct: 535 LDYFFYLLATLSFLNFLVYLWISKRYKYK 563
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 193/514 (37%), Positives = 300/514 (58%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
M++++A+ ++ +SGT L+GAF++D Y GRY T+ V GM +L+++A++
Sbjct: 63 MENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPG 122
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
L P C + A G T A F L L+ +G GGI+PC +FGADQF+ E K+
Sbjct: 123 L-TPTCSGETCHATAGQT----AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKE 177
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
+SFFNW+YF MI+ +V+V++Q +V W WGLG+P M ++ FF GS Y
Sbjct: 178 SKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRL 237
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDK 238
KP GSPL +QV VA+ +K +K+PE+ L N ++ I + KL HT DK
Sbjct: 238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDK 297
Query: 239 AAIMTPEDQIKSDGSA-INPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVV 297
AA+ T D + G+A + W+L ++ +VEE+K LIR++PIWA+ IV+ Q T V
Sbjct: 298 AAVETESD---NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFV 354
Query: 298 FQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR 357
Q D+ +G +FKIP+AS ++F L + W P+YD++IVP ++ T E G T LQR
Sbjct: 355 LQGNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQR 413
Query: 358 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEA 417
+ IG++++IF+M+ +GI+E R + + + E+ ++ W +PQ L+G +E
Sbjct: 414 IGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEET----IPMTIFWQVPQYFLVGCAEV 469
Query: 418 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477
FT I ++EF+Y Q P+ MRS+ +L+ A NYL+ FL+++V + T+ W+ ++
Sbjct: 470 FTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKN 529
Query: 478 LNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 511
LN G LDYF++L+A AKWY YK
Sbjct: 530 LNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
|
|
| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 189/489 (38%), Positives = 304/489 (62%)
Query: 9 LINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN 68
+INI+ G+ N TL GAF+SD Y GR+ TL S+ASF+GM + +LTAA+ L P C
Sbjct: 63 VINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC-- 120
Query: 69 QDSGACPG-PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFN 127
D C P WQL LF+GLGL+ IGAGG+RPCN+AFGADQF+ +T+ GK + +FFN
Sbjct: 121 IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFN 180
Query: 128 WYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSP 187
W+YF+FT A++I+LT +VY+Q+++SW G IP + LS F +G Y K EGS
Sbjct: 181 WWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSV 240
Query: 188 LASTVQVFVAAIKKRHLKLPEEPWLTL---HNHIPKNCINSKLPHTGQFRCLDKAAIMTP 244
A V+V AA KKR +K + + ++ P + K H + R DKA+I+T
Sbjct: 241 FADIVKVVTAACKKRKVKPGSDITFYIGPSNDGSPTTLVRDK--H--RLRFFDKASIVTN 296
Query: 245 EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSD 304
+++ DG+A WRL S+Q+V+ +K + ++P+W + I ++ QQ Y + QA+Q D
Sbjct: 297 PNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMD 356
Query: 305 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMIL 364
+ G +F++PA + SM+ L IWI +Y+ +I+P ++++T ++ +T+ R+ I ++
Sbjct: 357 KTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--VM 414
Query: 365 AIFTMIISGIIEDKRRSLALSRPVGLEQRRGA-ISSLSGLWLIPQLSLIGFSEAFTIIAE 423
I MI++G E KRR+ AL + G+ +S +S + L+PQ +L G +EAF+ +A
Sbjct: 415 GIICMIVAGFQEKKRRASAL--------KNGSFVSPVSIVMLLPQFALAGLTEAFSAVAL 466
Query: 424 VEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE-DLNKGR 482
+EF + PE+MR++ G++ F+ +I++Y+ LI+++ T+ WL + DLNK R
Sbjct: 467 MEFLTVRMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNR 525
Query: 483 LDYFYYLVA 491
L+ +++++A
Sbjct: 526 LENYFFIIA 534
|
|
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 185/507 (36%), Positives = 300/507 (59%)
Query: 7 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDC 66
T ++ ++S +NF LLGAFLSD+Y GR+ T+ AS++SFLGM++L LTA + ++ P C
Sbjct: 65 TNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPC 124
Query: 67 GNQDSGA-CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQF-NPNTESGKQGITS 124
+G+ C T QLA L++ L+ IG+GGIRPC+LAFGADQ N ++ + S
Sbjct: 125 DPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLES 184
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 184
FF WYY + A++I+ T IVY+Q + W G G+PA +M ++ +F L S LY
Sbjct: 185 FFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVT 244
Query: 185 GSPLASTVQVFVAAIKKRHLKLPEE-PWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMT 243
S Q VAA KKR L LP+ + H+ + I K P + + R L+KA +++
Sbjct: 245 KSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEI--KAP-SQKLRFLNKACLIS 301
Query: 244 P-EDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ 302
E++I SDG A+NPWRL + KVEE+K LI+VIPIW++ I+ + Q ++ + QA
Sbjct: 302 NREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSIN-TSQSSFQLLQATS 360
Query: 303 SDRRVGN--THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
DRR+ + F++PA S+ +F+++ L +W+ +YDR ++P ++ + +++ RM +
Sbjct: 361 MDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGL 420
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420
G+ ++ M IS ++E RR A+S+ G A+ +S +WL+PQ L G +EA T
Sbjct: 421 GLFMSFLAMAISAMVESFRRKKAISQ--GYANNSNAVVDISAMWLVPQYVLHGLAEALTA 478
Query: 421 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480
I + EF+Y +FP++M SI SL +G A+++ L +++ V+ T W+ +++NK
Sbjct: 479 IGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINK 538
Query: 481 GRLDYFYYLVAAXXXXXXXXXXXCAKW 507
G +Y+Y+++A C+ W
Sbjct: 539 GHYNYYYWVLAIMSFINVIYYVICS-W 564
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 189/511 (36%), Positives = 292/511 (57%)
Query: 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLH 62
+++A T + + GT L+GA L+D Y+GRY T+ S F+GM L+L+A++ L
Sbjct: 81 NVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALK 140
Query: 63 PPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGI 122
P +C CP TP Q A F GL L+ +G GGI+PC +FGADQF+ +
Sbjct: 141 PAECIGD---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRK 197
Query: 123 TSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVK 182
SFFNW+YF+ ++S +++V++Q + W G GIP M L+ A FF G+ LY K
Sbjct: 198 ASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQK 257
Query: 183 PEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSKLPHTGQFRCLDKAA 240
P GSP+ QV VA+ +K +K+PE+ L + I + K+ HT + LDKAA
Sbjct: 258 PGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAA 317
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
+++ E++ KS G N WRL ++ +VEE+K+LIR+ PIWAS I++ Q T V Q
Sbjct: 318 VIS-EEESKS-GDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQG 375
Query: 301 LQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAI 360
+ ++G+ F++P A+ F + IW+P+YDR IVP ++ T + G T +QRM I
Sbjct: 376 RAMNCKIGS--FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGI 433
Query: 361 GMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420
G+ +++ M + I+E R L ++ +GL + GA +S LW IPQ ++G +E F
Sbjct: 434 GLFVSVLCMAAAAIVEIIR--LHMANDLGLVES-GAPVPISVLWQIPQYFILGAAEVFYF 490
Query: 421 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480
I ++EF+Y Q P+ MRS+ +LA + A+ NYL+ ++++V FT W+ ++LN
Sbjct: 491 IGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNS 550
Query: 481 GRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 511
G LDYF++L+A A YK K
Sbjct: 551 GHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LV10 | PTR53_ARATH | No assigned EC number | 0.5755 | 0.9680 | 0.8360 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 7e-55 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-25 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 7e-17 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 7e-55
Identities = 116/422 (27%), Positives = 181/422 (42%), Gaps = 59/422 (13%)
Query: 35 YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI 94
+KT+ S+ +G ++L+L A P +P Q+A + GL L+ +
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAI----------------PPSLSPVQVALFYIGLYLIAL 44
Query: 95 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 154
G GGI+P AFGADQF+ + + FF+W+YF+ +I+ + Y+Q +V +
Sbjct: 45 GTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 155 WGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV--QVFVAAIKKRHLKLPE-EPW 211
G G+PA M L+ +F LGSR Y K P G + + AA K R L+LP+ W
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161
Query: 212 LT-LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQ-KVEEV 269
L K I+ HT + W L Q V +
Sbjct: 162 LYWALEKYNKRSISQTKVHTR-VAVIFIPLPKF--------------WALFDQQGSVWLL 206
Query: 270 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTI 329
+ ++ ++PIWA I+ Q T +V Q DR + F+IP AS+ F+ L + I
Sbjct: 207 QAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPL-FEIPPASFQSFNPLAVLI 265
Query: 330 WIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 389
+PI D ++ P L+ + G+T+ QR +GM + I ++ I+E KR A
Sbjct: 266 LLPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYA------ 315
Query: 390 LEQRRGAISSLSGLWLIPQLSLIGFSEAFT-IIAEV---EFYYKQFPENMRSIGGSLAFV 445
A+ S W +P L E F + EF P +M S+ L+
Sbjct: 316 -----AALGLTSPGWTVPLFILWSLPELFISGVGLAGALEFAPDALPSSMMSLWTLLSAA 370
Query: 446 GF 447
Sbjct: 371 AA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 98/382 (25%), Positives = 166/382 (43%), Gaps = 71/382 (18%)
Query: 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 64
TAT + + F+ L+GA ++D++ G++KT+ + S+ +G + SL A
Sbjct: 24 TATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHALASLGAV------- 76
Query: 65 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 124
G P A GL L+ +G GGI+PC AFG DQF E
Sbjct: 77 ----PSLGH-----PLHDALSLVGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRFR 124
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVS-------WAWGLGIPAFMMFLSCAMFFLGSRL 177
FF+++YF + S + ++ DV + G+P +M L+ +F +GS++
Sbjct: 125 FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKM 184
Query: 178 YAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237
Y K P G+ ++ ++ V A+KKR + E W LH LD
Sbjct: 185 YKKKPPVGNIVSKVMKCIVFALKKR-FRTRSEDWPRLHW-------------------LD 224
Query: 238 KAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVV 297
AA I+S K L+RV+ ++ +++ AL QQ
Sbjct: 225 WAAPKYLIRMIRS------------------TKRLLRVLFLFIPLPMFW-ALFDQQGSR- 264
Query: 298 FQALQSDRRVGNT-HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ 356
LQ+ R G+ F I + L + I +PI+D ++ P L + + T L+
Sbjct: 265 -WTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTR---FTSLR 320
Query: 357 RMAIGMILAIFTMIISGIIEDK 378
+MA+GM+LA ++ ++++K
Sbjct: 321 KMAVGMLLAALAFAVAALLQNK 342
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-17
Identities = 76/459 (16%), Positives = 152/459 (33%), Gaps = 77/459 (16%)
Query: 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 64
AT L + + ++G +L+D G +T+ ++ +G LVL++++
Sbjct: 62 HATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG----- 116
Query: 65 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 124
L+ GL L+++G G +P + + + + G
Sbjct: 117 -----------------PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG--- 156
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA----K 180
F +Y +I+ + + + W G G+ A M + +F LG R
Sbjct: 157 -FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240
P + V + + + L N L +
Sbjct: 216 PDPNPLSFNFLLPVLGGLV----VMILAALLTLLLNQ--NTFSGVLL----------VIS 259
Query: 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300
I+ S + +E + L+ IP++ A++++ + +Q
Sbjct: 260 ILIAIIYFAE--------AFRSPKVFDERRRLLAAIPLFLFAVIFWA--LYEQMGSSL-N 308
Query: 301 LQSDRRV--GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
L +DR V F++P A + + + ++ PI + L + + +
Sbjct: 309 LYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTK----LGRGNKQPSTPIKF 364
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418
A+G+ILA +I + G +S WL+ L F E F
Sbjct: 365 ALGLILAGLGFLILLL--------------AGIWFGGPSGLVSVWWLVLSYVLQSFGELF 410
Query: 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL 457
+ K P ++S ++ F+ A L G +
Sbjct: 411 ISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQV 449
|
Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 27/185 (14%)
Query: 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 64
A + +S T +G + D +G KT+ + LG +L
Sbjct: 49 QAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML------------ 96
Query: 65 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 124
P +F GLG + +G+G + + + + G +
Sbjct: 97 -------AMSIYP-----DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFT 144
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE 184
F Y + IS + + + + G + A M + FF G + +
Sbjct: 145 LF---YMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV 201
Query: 185 GSPLA 189
PL+
Sbjct: 202 PDPLS 206
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.92 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.91 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.91 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.89 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.89 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.89 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.89 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.88 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.88 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.88 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.88 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.87 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.87 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.87 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.86 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.86 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.85 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.85 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.85 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.85 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.84 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.84 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.83 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.83 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.81 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.81 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.79 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.79 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.79 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.79 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.78 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.78 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.78 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.78 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.75 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.75 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.72 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.71 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.7 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.7 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.69 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.66 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.65 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.65 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.63 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.63 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.63 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.59 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.59 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.58 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.57 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.56 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.56 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.52 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.38 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.36 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.36 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.27 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.26 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.24 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.22 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.12 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.09 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.06 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.03 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.02 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.01 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.01 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.0 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.98 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.98 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.97 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.92 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.88 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.87 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.86 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.83 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.82 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.82 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.8 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.78 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.77 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.75 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.74 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.74 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.72 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.72 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.68 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.67 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.65 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.65 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.64 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.64 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.57 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.57 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.57 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.55 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.54 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.54 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.54 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.51 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.49 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.46 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.45 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.44 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.43 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.41 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.41 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.41 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.4 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.4 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.39 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.39 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.38 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.38 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.38 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.37 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.37 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.37 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.36 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.36 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.36 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.34 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.34 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.32 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.31 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.29 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.28 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.27 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.27 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.26 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.26 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.25 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.22 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.22 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.19 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.19 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.17 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.15 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.14 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.13 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.12 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.11 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.08 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.08 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.08 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.05 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.05 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.04 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.02 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.99 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.98 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.91 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.88 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.84 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.84 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.83 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.8 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.78 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.75 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.75 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.62 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 97.62 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.61 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.58 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.58 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.52 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.5 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.43 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.36 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.35 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.3 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.28 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.16 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.15 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.93 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.91 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.9 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.88 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.71 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.66 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.53 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.43 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.18 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.13 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.11 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.09 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.04 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.82 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.81 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 95.75 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.35 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.32 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.25 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.82 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.4 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.27 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.7 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 92.18 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.96 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 90.6 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.27 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 89.38 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 88.86 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 87.5 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.67 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 81.39 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.04 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=375.10 Aligned_cols=495 Identities=43% Similarity=0.753 Sum_probs=437.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC-CCCCCCCCCchh
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQ-DSGACPGPTPWQ 81 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (532)
..++.-.++.|.......++.+++++|.|+||.+++.++..++.+|..+..+++.++.++++.|..+ ...-|..+....
T Consensus 72 ~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q 151 (571)
T KOG1237|consen 72 GGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQ 151 (571)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHH
Confidence 4567788999999999999999999999999999999999999999999999999999998776222 223578878888
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...++.+.-+.++|.|...|+..++.+|+|+..++.++..+...++++|+..++|..++-.+-.++.++.||.+.|.++.
T Consensus 152 ~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~ 231 (571)
T KOG1237|consen 152 LAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPT 231 (571)
T ss_pred HHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHH
Confidence 99999999999999999999999999999996666667777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 241 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (532)
+.+.+++++++...+.|+..+|.+++...+.+++..+.+++..+.+.+++.. ...........++++++++|++.+
T Consensus 232 ~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~----~~~~~~~~~~~~t~~f~~l~kaa~ 307 (571)
T KOG1237|consen 232 VLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEEL----YYDCTDSVAIEGTKPFRFLDKAAL 307 (571)
T ss_pred HHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhc----cccccccccccCCcccchhhHhhc
Confidence 9999999999999999999999999999999999999999887776554333 111111122334778999999998
Q ss_pred cCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhhh
Q 009538 242 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 321 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
+.+++. +.+...++|+.|+.++++|.|.+++.++.+...++++..+.|+.+....|+..++++.+ .++++|++.++.
T Consensus 308 ~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~f~ip~asl~~ 384 (571)
T KOG1237|consen 308 KTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLG-SNFKIPAASLQV 384 (571)
T ss_pred cCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCC-CCeEeCchhHHH
Confidence 876554 44556789999999999999999999999999999999999999999999999999997 239999999999
Q ss_pred hhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch
Q 009538 322 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS 401 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (532)
+..+.+++..|+.|++..|+.+|+++++...+.+.++-+|+++..+++...+..+.++.+.+..+. ...+++|
T Consensus 385 f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~-------~~~~~mS 457 (571)
T KOG1237|consen 385 FILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLL-------VETNPMS 457 (571)
T ss_pred HHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhcc-------CCCCCee
Confidence 999999999999999999999999887666889999999999999999999999999988765411 1146799
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC-CCCcc
Q 009538 402 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP-EDLNK 480 (532)
Q Consensus 402 ~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 480 (532)
.+|++++|+++|++|++...+..++.++.+|++||+.+++++.+..++|+.++.++.......++. .++|+. +++|.
T Consensus 458 i~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~ 535 (571)
T KOG1237|consen 458 ILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNK 535 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhh
Confidence 999999999999999999999999999999999999999999999999999999999988765533 458999 99999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 513 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~ 513 (532)
++.+++||+++....++...+..+.++++.+..
T Consensus 536 ~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 536 GRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred hHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 999999999999999999999888887776643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=305.93 Aligned_cols=425 Identities=18% Similarity=0.273 Sum_probs=314.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|++++..+.++|....++.+++|||+|||++|+||++..+.+++.+|+++++.++. .
T Consensus 58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~----------------------~ 115 (498)
T COG3104 58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV----------------------S 115 (498)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc----------------------c
Confidence 478899999999999999999999999999999999999999999999999998740 1
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...++++..+.++|.|.++|++.++++|++|+.|+|++ ..++++|+++|+|++++|++++++.+..||+..|.+.
T Consensus 116 ~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD----~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a 191 (498)
T COG3104 116 GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD----GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA 191 (498)
T ss_pred cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC----CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 345799999999999999999999999999999888754 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcceeeecC--CCCCchh------hHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCc
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVK--PEGSPLA------STVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQ 232 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (532)
++.+.++++.++++++++.... ++..+.. .....+.....-...... + . +.
T Consensus 192 avGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~----------~----------~~ 250 (498)
T COG3104 192 AVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLL-N----------Q----------NT 250 (498)
T ss_pred HHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHH-H----------H----------HH
Confidence 9999999999988887665433 1111111 001100000000000000 0 0 00
Q ss_pred ccchhh-hcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhh-hccCcccCCc
Q 009538 233 FRCLDK-AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNT 310 (532)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (532)
.+..-. ..+....... .+...| .+.. +|+||++..+++++...+||+.+.|+.+.+..++ ...+++..
T Consensus 251 ~~~~~~~~~i~~~~~~~----~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-- 320 (498)
T COG3104 251 FSGVLLVISILIAIIYF----AEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-- 320 (498)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence 000000 0000000000 000000 1112 6789999999999999999999999999555554 44455533
Q ss_pred cceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcc
Q 009538 311 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 390 (532)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (532)
++.+++++++++|++.++++.|+.+++..|+.++ .++++...++..|+++++.+++.+........
T Consensus 321 g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~----~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---------- 386 (498)
T COG3104 321 GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLILAGLGFLILLLAGIWFG---------- 386 (498)
T ss_pred ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc----------
Confidence 6889999999999999999999999985555544 33477888999999999999988776633211
Q ss_pred cccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 009538 391 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST 470 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 470 (532)
++.+..|.+|++..|+++++||.+..|...+++++.+|+++++.++|++.+.+..++.++..+.+...+ +
T Consensus 387 ----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~----- 456 (498)
T COG3104 387 ----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T----- 456 (498)
T ss_pred ----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c-----
Confidence 113568999999999999999999999999999999999999999999999999999999888774221 0
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009538 471 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 510 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~ 510 (532)
++. .+......+|+.++...++..+......|+.++
T Consensus 457 ~~~----~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 457 DPA----YTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred chh----hhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 000 111234567888887777777766666665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=301.12 Aligned_cols=429 Identities=13% Similarity=0.199 Sum_probs=296.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++++++|+.+.|....++.++++|+++||++||||+++++.+++++|+++++++.+.
T Consensus 47 ~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~---------------------- 104 (489)
T PRK10207 47 FSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK---------------------- 104 (489)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc----------------------
Confidence 3577889999999999999999999999994499999999999999999999997531
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
...++++|.++|+|.|+..|+..++++|+||++++| |.+.++++|++.|+|.++||.+++++.+++|||+.|++.
T Consensus 105 -~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~ 179 (489)
T PRK10207 105 -PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLC 179 (489)
T ss_pred -hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 224668999999999999999999999999865422 245799999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcceeeec--CCCCCchh--hHHHHHH------HHHHhcccCCCCCCcccccccCCcccccCCCCCC
Q 009538 161 AFMMFLSCAMFFLGSRLYAKV--KPEGSPLA--STVQVFV------AAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 230 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (532)
++.++++++.++..++.+++. +|++++.+ ....... ........ ...........
T Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------- 244 (489)
T PRK10207 180 GAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH-NVEVANLVLIV-------------- 244 (489)
T ss_pred HHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHH--------------
Confidence 776666666666555444332 22222221 1110000 00000000 00000000000
Q ss_pred CcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhh-ccCcccCC
Q 009538 231 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGN 309 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 309 (532)
........+... + .+.+..++++.+..+.+++...++|..+.|..+.+..+.. ..+....
T Consensus 245 --~~~i~~~~f~~~-----~-----------~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~- 305 (489)
T PRK10207 245 --LSIVVTIIFFRE-----A-----------FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL- 305 (489)
T ss_pred --HHHHHHHHHHHH-----H-----------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-
Confidence 000000000000 0 0001123455666666677788899998888664433333 4455444
Q ss_pred ccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 009538 310 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 389 (532)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (532)
++.++++.++++|++.+++..|+.+++ .+|+++|+.++++..++.+|+++.+++++.+....... ...
T Consensus 306 -G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---- 373 (489)
T PRK10207 306 -GFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---- 373 (489)
T ss_pred -ceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC----
Confidence 677889999999999999999997665 77877776567888899999999998887654332100 000
Q ss_pred ccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 009538 390 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAS 469 (532)
Q Consensus 390 ~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~ 469 (532)
....+.||+++.+++.++||++..+..++++++.+|++++|.++|++++.+.+|+.++..+........ ..
T Consensus 374 -------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~~ 444 (489)
T PRK10207 374 -------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPD--NI 444 (489)
T ss_pred -------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc
Confidence 123678999999999999999999999999999999999999999999999999999998887653110 00
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009538 470 TGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 515 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~ 515 (532)
.++. .....+.++|..+++.+++..+.+++..|+.++...++
T Consensus 445 ~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 486 (489)
T PRK10207 445 TDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTP 486 (489)
T ss_pred ccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0010 01123677888888888877777777777666554333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=290.97 Aligned_cols=416 Identities=16% Similarity=0.218 Sum_probs=294.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++..+++++.+.|.++..++++++|+++||++||||+++++.++++++.+++++++
T Consensus 45 ~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~------------------------ 100 (475)
T TIGR00924 45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI------------------------ 100 (475)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 36788999999999999999999999999944999999999999999999999874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...++++|++.|+|.|+..|+..++++|++++++++ +|++.++++|+..|+|.++||.+++++.++.||++.|++.
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3557888999999999999999999999999865422 2356899999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCCCchhh-----HHHH------HHHHHHhcccCCCCCCcccccccCCcccccCCCCC
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEGSPLAS-----TVQV------FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 229 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (532)
++.++++.+.++..++.+++.++++++..+ ..+. +....+.... ..+... .+ ....
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~-~~~~ 244 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHVVI-----------AN-ILLM 244 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-HhccHH-----------HH-HHHH
Confidence 877777766666655554332222211110 0000 0000000000 000000 00 0000
Q ss_pred CCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchh-hhhhhhccCcccC
Q 009538 230 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTY-VVFQALQSDRRVG 308 (532)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 308 (532)
......+...++...+ + ..+..++++....+++++....+|+.+.|..+. ..++...++...+
T Consensus 245 -----~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~ 308 (475)
T TIGR00924 245 -----TVTLAVIIFFFRLAFK------P-----RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308 (475)
T ss_pred -----HHHHHHHHHHHHHHHh------c-----cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 0000000000000000 0 001122344455778888889999999998884 4555565677665
Q ss_pred CccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 009538 309 NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPV 388 (532)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (532)
++++|++.++++|++.+++..|+++++ ..++.||...++...++.+|+++.+++++..++... ....
T Consensus 309 --~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~--- 375 (475)
T TIGR00924 309 --GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIW----FADA--- 375 (475)
T ss_pred --ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC---
Confidence 788999999999999999999997765 555555533456677889999999999888776521 1110
Q ss_pred cccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 009538 389 GLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 468 (532)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~ 468 (532)
..+.+.||+++.+++.++||.+..|..++++++.+|++.||+++|++.+...+|+.+++.+.....+..
T Consensus 376 --------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--- 444 (475)
T TIGR00924 376 --------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--- 444 (475)
T ss_pred --------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 135789999999999999999999999999999999999999999999999999999999887765421
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009538 469 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 509 (532)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~ 509 (532)
+...+|...+++.++..+.+++..|..+
T Consensus 445 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 445 -------------GVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred -------------chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666667666666666666655544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=285.46 Aligned_cols=413 Identities=15% Similarity=0.195 Sum_probs=288.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+++.+.+.|....+++++++|+++||++||||+++++.++..+|+++++....
T Consensus 42 ls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~----------------------- 98 (493)
T PRK15462 42 YDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI----------------------- 98 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 367889999999999999999999999999559999999999999999988775421
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...++++..+.++|.|...|+..++++|+||+++++ |.+.++++|...|+|+.++|.+++++.+..||++.|.+.
T Consensus 99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ia 174 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLA 174 (493)
T ss_pred chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHH
Confidence 1123555666777888999999999999999865433 245899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcceeeecC---CCCCchhhHHHH------HHH----HHHhcccCCCCCCcccccccCCcccccCCC
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVK---PEGSPLASTVQV------FVA----AIKKRHLKLPEEPWLTLHNHIPKNCINSKL 227 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (532)
++.++++++.++..++++.+.. |+..+.++.... +.. .......... ......... .
T Consensus 175 aigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~-- 244 (493)
T PRK15462 175 AVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKE-WSVYALIVA-------T-- 244 (493)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------H--
Confidence 8877777777666655543321 111110110000 000 0000000000 000000000 0
Q ss_pred CCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccch-hhhhhhhccCcc
Q 009538 228 PHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT-YVVFQALQSDRR 306 (532)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 306 (532)
....-++-. +.. ...+.+|+|++..++++++...+||..+.|.++ ..++...+.|++
T Consensus 245 --~~~~~~~~~--~~~------------------~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~ 302 (493)
T PRK15462 245 --IIGLGVLAK--IYR------------------KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRD 302 (493)
T ss_pred --HHHHHHHHH--HHH------------------hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccch
Confidence 000000000 000 001225688888899999999999999999999 556666778888
Q ss_pred cCCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 009538 307 VGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSR 386 (532)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (532)
+. ++++|+..++++|++.+++.+|++.++ ..|+.+|+++++...|+..|+++++++++.+.+.... ..
T Consensus 303 ~~--g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~-- 370 (493)
T PRK15462 303 MF--GYTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARW----SA-- 370 (493)
T ss_pred hc--ceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cC--
Confidence 87 899999999999999999999998776 5665444445677889999999999999887765321 00
Q ss_pred CCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc
Q 009538 387 PVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF-AISNYLNGFLISMVHRFT 465 (532)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~-~ig~~l~~~~~~~~~~~~ 465 (532)
.....+.+|++..++++++||.+..|...+++++.+|++.+|++||++.+.. .+|+.+++.+........
T Consensus 371 ---------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~ 441 (493)
T PRK15462 371 ---------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQAS 441 (493)
T ss_pred ---------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0124789999999999999999999999999999999999999999998854 788888888777653210
Q ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 009538 466 KGASTGDWLPEDLNKGRLDYFYYLVAALGLLN 497 (532)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 497 (532)
.++.-....+...+..+|..++.+.++.
T Consensus 442 ----~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 442 ----FDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred ----CCccccccchhhhHHHHHHHHHHHHHHH
Confidence 0000000001124666777777666555
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=285.51 Aligned_cols=425 Identities=15% Similarity=0.236 Sum_probs=295.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++++++++.+.|....+..++++|+++||++|||++++++.+++++++++++++++ +
T Consensus 55 s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~-----------------------~ 111 (500)
T PRK09584 55 SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH-----------------------D 111 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc-----------------------c
Confidence 56778899989888888888899999999339999999999999999999988741 3
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...++++|+++|+|.|...|+..++++|+||+++++ +.+.++++|+..|+|.++||.+++++.+++|||+.|++.+
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456788999999999999999999999999754322 2347899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhcceeeec--CCCCCchh--hHHH----HHHHHHHhcc-cCCCCCCcccccccCCcccccCCCCCCCc
Q 009538 162 FMMFLSCAMFFLGSRLYAKV--KPEGSPLA--STVQ----VFVAAIKKRH-LKLPEEPWLTLHNHIPKNCINSKLPHTGQ 232 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (532)
+.++++.+.++...+.+++. +|++++.+ .... .......... .+.++... ..
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 248 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIAR-------------------MA 248 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHH-------------------HH
Confidence 87777666555544443332 12221111 1100 0000000000 00000000 00
Q ss_pred ccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhh-ccCcccCCcc
Q 009538 233 FRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTH 311 (532)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 311 (532)
........... .++...+.+..++++.+..+..++..+.||..+.|+++.+..+.. ..++... +
T Consensus 249 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--g 313 (500)
T PRK09584 249 LGVVALGIVVI-------------FGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--G 313 (500)
T ss_pred HHHHHHHHHHH-------------HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--c
Confidence 00000000000 000000011234566666677778888999999999987665543 3454444 6
Q ss_pred ceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccc
Q 009538 312 FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE 391 (532)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (532)
+.++++.++++|++.+++..|+.+++ .+|+.+| .++..++.+|+++.+++++........ ..
T Consensus 314 ~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~------- 375 (500)
T PRK09584 314 IAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AN------- 375 (500)
T ss_pred eEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cC-------
Confidence 77899999999999999999997775 6676666 567789999999999999887765321 10
Q ss_pred ccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 009538 392 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTG 471 (532)
Q Consensus 392 ~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 471 (532)
....++.+|+++.+++.++||++..|...+++.+.+|+++||+++|++.+...+|+.+++.+...+...
T Consensus 376 ----~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~------- 444 (500)
T PRK09584 376 ----DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVP------- 444 (500)
T ss_pred ----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 123578889999999999999999999999999999999999999999999999999998887644210
Q ss_pred CCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 009538 472 DWLPEDL-NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 516 (532)
Q Consensus 472 ~~~~~~~-~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~ 516 (532)
+...+.. ..+++...|..+++++++..+.+++..++.++.+..+.
T Consensus 445 ~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~ 490 (500)
T PRK09584 445 DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS 490 (500)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000101 11236778888888777766666666666665544333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=250.85 Aligned_cols=317 Identities=28% Similarity=0.531 Sum_probs=254.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++++++..+.+.|....++.+++||+++|+++||+++++++.+++.+|.++.++++..+..+ ..
T Consensus 20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----------------~~ 83 (654)
T TIGR00926 20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----------------PL 83 (654)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----------------ch
Confidence 35778899999999999999999999999999999999999999999999999865322110 12
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-------ccc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-------VSW 153 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-------~gw 153 (532)
+...++++..+.++|.|++.|+..+..+|+|+++++ +++.++++++|+++|+|+++++++.+++.++ .+|
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 345678899999999999999999999999975432 3456799999999999999999999998743 379
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcc
Q 009538 154 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 233 (532)
Q Consensus 154 ~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (532)
++.|.++++.+++++++++..+++++..+|.+++..+..+++..+.+++....+++ ...
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~---------------------~~~ 219 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH---------------------WPL 219 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc---------------------cch
Confidence 99999999999999999988888887777777766677777666665543211110 002
Q ss_pred cchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccce
Q 009538 234 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK 313 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (532)
+|++.+... ...++++++|++++++++++...++|..+.|+.+.+..|+..++.+++ +++
T Consensus 220 ~~ld~a~~~------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~--g~~ 279 (654)
T TIGR00926 220 HWLDYAKDK------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG--GFE 279 (654)
T ss_pred hHHHHhccc------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC--CEe
Confidence 233322111 012356788999999999999999999999999988888888887776 788
Q ss_pred eChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009538 314 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRR 380 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 380 (532)
++++.++.+|++.+++..|++++.++|..+|.+.+ .++..++.+|++++++++++.++.+.++.
T Consensus 280 ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 280 IQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998877777665433 67899999999999999999998887765
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-24 Score=226.51 Aligned_cols=368 Identities=15% Similarity=0.114 Sum_probs=221.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+|+.+.|.++..++.+++|+++||+ |||++++++.+++.++++++++++ |
T Consensus 39 s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~a~------------------------~ 93 (495)
T PRK14995 39 SGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAFSP------------------------T 93 (495)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHcC------------------------C
Confidence 467889999999999999999999999996 999999999999999999999985 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|+++|+|.+...|.....+.+.++++ ++|+++++++....++|..+||.+++++.+++||||.|++..
T Consensus 94 ~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~-----~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~ 168 (495)
T PRK14995 94 ASWLIATRALLAIGAAMIVPATLAGIRATFTEE-----KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINV 168 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 788999999999999999998888888877542 234668999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHH------HHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQV------FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRC 235 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (532)
++.++..++.+...|+.+.++.++......... +....+... +...+....... . ....
T Consensus 169 ~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~------~--------~~~~ 233 (495)
T PRK14995 169 PIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTAL-KGFLSLWVTSLT------L--------LTGA 233 (495)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcc-ccCCchHHHHHH------H--------HHHH
Confidence 776666555444444422111111111110000 000111000 000000000000 0 0000
Q ss_pred hhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhh-hHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee
Q 009538 236 LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI 314 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
.-...... .+. +...+..+++.+ ++ |.... .+..+.....+. ......+.+.+.....+. .
T Consensus 234 ~~l~~f~~--~e~-~~~~p~~~~~lf-----~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~lq~v~g~s~--------~ 295 (495)
T PRK14995 234 LLLGLFIR--TQL-AASRPMIDMRLF-----TH-RIILSGVVMAMTAMITLV-GFELLMAQELQFVHGLSP--------L 295 (495)
T ss_pred HHHHHHHH--HHh-cCCCCCcCHHHh-----CC-cccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCH--------H
Confidence 00000000 000 000111111111 11 11111 111111111111 111111111111111110 1
Q ss_pred ChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccC
Q 009538 315 PAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRR 394 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (532)
..+.......++..++.++.+++ .+|+++| +.+..|+++.++++.......
T Consensus 296 ~ag~~~~~~~~~~~~~~~~~g~l----~~r~g~~-------~~~~~g~~~~~~~~~~l~~~~------------------ 346 (495)
T PRK14995 296 EAGMFMLPVMVASGFSGPIAGIL----VSRLGLR-------LVATGGMALSALSFYGLAMTD------------------ 346 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHcCch-------HHHHHHHHHHHHHHHHHHHhc------------------
Confidence 12333444455556666665544 5665544 456677777766665544331
Q ss_pred CccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 395 GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 395 ~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
...+.+.....+++.|+|.+...+.....+.+.+|++.++.+.+++++.+.+|+.+|+.+.+.+.+.
T Consensus 347 ---~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 347 ---FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred ---CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123444556778889999998888899999999999999999999999999999999999998654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=217.17 Aligned_cols=340 Identities=13% Similarity=0.053 Sum_probs=222.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.|.+++.+++++.|+++||+ ||||++..+..++.++++++++++
T Consensus 41 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 95 (390)
T PRK03545 41 MQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSALAW------------------------ 95 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678899999999999999999999999996 999999999999999999999985
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|++.+...|...+++.|++|++ +|+++++++....++|.++||.+++.+.++.|||+.|++.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 5788999999999999999999999999998742 2345899999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhc
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (532)
++..++..+..+...|+.++ +++++..+ ..
T Consensus 170 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~----~~-------------------------------------------- 199 (390)
T PRK03545 170 GGGALITLLLLIKLLPLLPS--EHSGSLKS----LP-------------------------------------------- 199 (390)
T ss_pred HHHHHHHHHHHHHhCCCCCC--CCcchHHH----HH--------------------------------------------
Confidence 87665554443333332110 00000000 00
Q ss_pred ccCCcccccCCCCCCCCCccchhhhhhhhhhhhh-hHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhh
Q 009538 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 319 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
+..++ +.... ....++.....+......+.+.. .....+.. ..+..
T Consensus 200 -----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~s~~--------~~~~~ 246 (390)
T PRK03545 200 -----------------------LLFRR-PALVSLYLLTVVVVTAHFTAYSYIEPFVQ-QVAGLSEN--------FATLL 246 (390)
T ss_pred -----------------------HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcc--------HHHHH
Confidence 00001 11111 11111111111111111111111 11111111 11222
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
.....++.+++..+.+++ .+|.++ +.+..+..+..++....... .
T Consensus 247 ~~~~~~~~~~g~~~~g~l----~dr~~~--------~~~~~~~~~~~~~~~~l~~~-----------------------~ 291 (390)
T PRK03545 247 LLLFGGAGIIGSVLFSRL----GNRHPS--------GFLLIAIALLLVCLLLLLPA-----------------------A 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHH----hhccch--------hHHHHHHHHHHHHHHHHHHH-----------------------h
Confidence 333344445555554433 444322 23445555554544333222 1
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (532)
.+.+.++...++.|++.....+.....+.+..|+ .|++++|+++....+|..+++.+.|.+.|..
T Consensus 292 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-------------- 356 (390)
T PRK03545 292 NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHL-------------- 356 (390)
T ss_pred chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence 2445556677778888877777778888888885 6899999999999999999999999998754
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 480 KGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 480 ~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
++...|+..+.+.+++.+..+...+
T Consensus 357 --g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 357 --GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred --ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 3556777777888887777666543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=223.05 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=116.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+.+.+++.+.+.++..++++++|+++||+ |||+++.++++++.+++++++++.+.. ...++
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~------------------~~~~~ 115 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSS------------------PKSVM 115 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcc------------------cchHH
Confidence 44668999999999999999999999996 999999999999999999998874200 01236
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-------------
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------------- 149 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~------------- 149 (532)
..++++|+++|++.|...|..+.+++|++|+ +.|++..++.+....+|.++|+.++.++..
T Consensus 116 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 189 (502)
T TIGR00887 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATK------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEA 189 (502)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 7899999999999999999999999999885 234568999999999999999888765421
Q ss_pred ----------cccchhhhHHHHHHHHHHHH
Q 009538 150 ----------DVSWAWGLGIPAFMMFLSCA 169 (532)
Q Consensus 150 ----------~~gw~~~F~v~~~~~~l~~~ 169 (532)
.++||++|.+.++..++..+
T Consensus 190 ~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 190 SCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 25899999988776555444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=222.97 Aligned_cols=149 Identities=14% Similarity=0.111 Sum_probs=119.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC-CCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG-PTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (532)
++.+.+++.+++.++..++++++|+++||+ ||||+++++.++++++.++++++...- .++. ++..
T Consensus 53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~-------------~~~~~~~~~ 118 (479)
T PRK10077 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGF-------------TSIGPDNTG 118 (479)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccc-------------ccccccchh
Confidence 457889999999999999999999999996 999999999999999999888752100 0000 1123
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--------cccc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVS 152 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--------~~~g 152 (532)
++..++++|+++|++.|+..|...++++|++|++ +|++.++.+..+..+|.++++.+++.+. +++|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 4678899999999999999999999999998752 2355899999999999999988766543 4579
Q ss_pred chhhhHHHHHHHHHHHHH
Q 009538 153 WAWGLGIPAFMMFLSCAM 170 (532)
Q Consensus 153 w~~~F~v~~~~~~l~~~~ 170 (532)
||+.|++.++..++..+.
T Consensus 193 Wr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 193 WRYMFASEAIPALLFLML 210 (479)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999987766655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=214.25 Aligned_cols=345 Identities=11% Similarity=0.023 Sum_probs=218.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.|.+++.+++++.|+++||+ |||+++..+..+++++.+++++++
T Consensus 41 ~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~------------------------ 95 (393)
T PRK09705 41 MSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP------------------------ 95 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc------------------------
Confidence 4678999999999999999999999999996 999999999999999999999985
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F~v 159 (532)
++..++++|+++|+|.|...+....++.|+++ + + |+.+++.+..+.++|..+|+.+++++.++. +||+.+.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~-~-----~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q-R-----TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c-c-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56789999999999999999999999999875 2 1 245899999999999999999999988775 89998876
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhh
Q 009538 160 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 239 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (532)
.++..++.+..++...++ +|+.++ .++ . +
T Consensus 169 ~~~~~~~~~~~~~~~~~~----~~~~~~---------------------~~~-------------~--------~----- 197 (393)
T PRK09705 169 WALPAVVALFAWWWQSAR----EVASSH---------------------KTT-------------T--------T----- 197 (393)
T ss_pred HHHHHHHHHHHHHHHhcC----CCcccc---------------------CCC-------------c--------C-----
Confidence 555443333322222111 111000 000 0 0
Q ss_pred cccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhh
Q 009538 240 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
.. +...+.+.....+...+....++....+.+.++. + ...+.. ..+..
T Consensus 198 -----------------~~-----~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~-~-~g~s~~--------~ag~~ 245 (393)
T PRK09705 198 -----------------PV-----RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYI-E-IGASAQ--------YSGSL 245 (393)
T ss_pred -----------------Cc-----ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCChh--------hhhHH
Confidence 00 0000011111111111222222222222333221 1 111111 12233
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
.....++.+++.++.+++ .+|.++| +.+..++.+..++........
T Consensus 246 ~~~~~i~~i~g~~~~g~l----~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~----------------------- 291 (393)
T PRK09705 246 LALMTLGQAAGALLMPAM----ARHQDRR-------KLLMLALVLQLVGFCGFIWLP----------------------- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhhccch-------HHHHHHHHHHHHHHHHHHHcc-----------------------
Confidence 344445555555554443 4544333 455666666666655443321
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~-P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (532)
.+.... ..++.+++.+...+.......+.. |++.+|+..|+.+....++..+++.+.+++.|..+
T Consensus 292 ~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g------------ 357 (393)
T PRK09705 292 LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG------------ 357 (393)
T ss_pred chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 111111 123456666666666666667776 46789999999999999999999999999988642
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009538 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511 (532)
Q Consensus 479 ~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~ 511 (532)
++...|...++++++..+......+|++.+
T Consensus 358 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 358 ---NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 234566666677777666666666665544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=210.03 Aligned_cols=145 Identities=10% Similarity=-0.023 Sum_probs=113.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.++|.+++.++++++|+++||+ |||++++.+......+.+ +..+. +
T Consensus 23 ~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-----------------------~ 77 (368)
T TIGR00903 23 VSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-----------------------F 77 (368)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-----------------------c
Confidence 3678899999999999999999999999996 999987766655555443 33331 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
++..++++|+++|+|.|.. +.....++|++|+ ++|++++++.+.+.++|.++++.+++++.+++|||+.|++.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5788999999999999964 4566667898874 23467899999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHhhcce
Q 009538 161 AFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (532)
++..++..++++...|+
T Consensus 151 ~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 151 AAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 66555544444443333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=224.45 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=117.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+++.+++.+++.++++++|+++||+ |||+++++++++++++++++++++ +
T Consensus 200 s~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~------------------------s 254 (742)
T TIGR01299 200 PDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ------------------------G 254 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh------------------------h
Confidence 567889999999999999999999999996 999999999999999999999885 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-----------
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD----------- 150 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~----------- 150 (532)
++.++++|+++|+|.|+..|+...+++|++|+ +.|+..++++.....+|.++++.++..+...
T Consensus 255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 77899999999999999999999999999874 2345678888888999999998876655432
Q ss_pred --ccchhhhHHHHHHHHHHHHH
Q 009538 151 --VSWAWGLGIPAFMMFLSCAM 170 (532)
Q Consensus 151 --~gw~~~F~v~~~~~~l~~~~ 170 (532)
.+||+.|++.++..++.++.
T Consensus 329 ~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 46899998877765555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=211.11 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=121.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++.+.+.++..+++++.|+++||+ ||||++..+.++..++.++++++.
T Consensus 47 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 101 (406)
T PRK11551 47 LDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFSLATAQAW------------------------ 101 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678899999999999999999999999996 999999999999999998888874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
++..+++.|+++|++.+...|...+++.|++|+ ++|++.+++++...++|..+++.+++.+.+..+||+.|++.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP------RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 577899999999999999999999999999864 23456899999999999999999999999999999999987
Q ss_pred HHHHHHHHHH
Q 009538 161 AFMMFLSCAM 170 (532)
Q Consensus 161 ~~~~~l~~~~ 170 (532)
++..++..+.
T Consensus 176 ~~~~~~~~~~ 185 (406)
T PRK11551 176 GVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHH
Confidence 7654444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=201.70 Aligned_cols=340 Identities=16% Similarity=0.157 Sum_probs=231.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..+++++++.|.+++.+++|+-..++||+ .||++++....+|++|.+++++++
T Consensus 45 vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi~~n~l~alAp------------------------ 99 (394)
T COG2814 45 VSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFIVSNLLSALAP------------------------ 99 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678899999999999999999999999995 999999999999999999999995
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
|+..++++|++.|+..|.+.+....+.+|..||++ |++++++...+..+..++|..+|.++.+.+|||+.|++-
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 78999999999999999999999999999998743 345899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCC--CchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhh
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEG--SPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDK 238 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (532)
.+..++.++..+...| +...+.. .+..+..+
T Consensus 174 a~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~--------------------------------------------- 206 (394)
T COG2814 174 AVLALLALLLLWKLLP--PSEISGSLPGPLRTLLR--------------------------------------------- 206 (394)
T ss_pred HHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHH---------------------------------------------
Confidence 8888877777777666 1111100 00000000
Q ss_pred hcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee-Chh
Q 009538 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI-PAA 317 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 317 (532)
..++.+....++..++.....+..|.+..+.+ .+..+ +.. ...
T Consensus 207 --------------------------~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L-------~~v~g---~s~~~vs 250 (394)
T COG2814 207 --------------------------LLRRPGVLLGLLATFLFMTGHFALYTYIRPFL-------ESVAG---FSVSAVS 250 (394)
T ss_pred --------------------------HhcCchHHHHHHHHHHHHcchhhhHHhHHHHH-------HHccC---CCHhHHH
Confidence 00001111112222222222333332222222 21111 111 123
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++.+++..+.+|+ .|| . +.+.+...+.+.++.++.+...
T Consensus 251 ~~Ll~~Gv~~~~Gn~~gGrl----~dr-~-------~~~~l~~~~~l~a~~~l~l~~~---------------------- 296 (394)
T COG2814 251 LVLLAFGIAGFIGNLLGGRL----ADR-G-------PRRALIAALLLLALALLALTFT---------------------- 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhh----ccc-c-------chhHHHHHHHHHHHHHHHHHHh----------------------
Confidence 44455566666666665554 554 2 2244555556666665555543
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
..+.+..+...++.+++........+...++..| +.++.+++++....++|..+|..+.|.+.|..
T Consensus 297 -~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~------------ 362 (394)
T COG2814 297 -GASPALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLVLDAL------------ 362 (394)
T ss_pred -cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 1244555555555666665555555555566455 45899999999999999999999999998753
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
++....+..+.+.+++.+..+...+
T Consensus 363 ----g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 363 ----GYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777766665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=211.94 Aligned_cols=364 Identities=13% Similarity=0.038 Sum_probs=224.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.++++...... .++
T Consensus 50 s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 109 (417)
T PRK10489 50 STLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALNAFLP-------------------EPS 109 (417)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHHHHcC-------------------CCc
Confidence 567889999999999999999999999996 999999999998888887765421000 025
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.+++.|+++|++.+...+...+++.|++|++ ++++..++.+...++|..+||.+++++.+..+|+|.|++.+
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 778899999999999988888899999987642 23457888889999999999999999988889999999877
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 241 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (532)
+..++..+..+. .|+. ++++++..+..+ +..+
T Consensus 184 ~~~~~~~~~~~~-l~~~---~~~~~~~~~~~~----------------------------------------~~~~---- 215 (417)
T PRK10489 184 AGTFITLLPLLR-LPAL---PPPPQPREHPLR----------------------------------------SLLA---- 215 (417)
T ss_pred HHHHHHHHHHHh-CCCC---CCCCcccccchH----------------------------------------HHHH----
Confidence 766555443322 2221 111000000000 0000
Q ss_pred cCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhhh
Q 009538 242 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 321 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
.+ ......+.+...+...+.......... ..+.+.....+.+. ...+....
T Consensus 216 ---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~--------~~~g~~~~ 266 (417)
T PRK10489 216 ---------------GF-----RFLLASPVVGGIALLGGLLTMASAVRV-LYPALADEVWQMGA--------AQIGLLYA 266 (417)
T ss_pred ---------------HH-----HHHHcChHHHHHHHHHHHHHHHHhHHH-hhHHHHHhccCCCh--------hHhHHHHH
Confidence 00 000000111111111111111111111 11111111011110 11223333
Q ss_pred hhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch
Q 009538 322 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS 401 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (532)
...++.+++..+.+++ .+|. ++.+.+..+.++.+++++..... .+
T Consensus 267 ~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~------------------------~~ 311 (417)
T PRK10489 267 AVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGLM------------------------PM 311 (417)
T ss_pred HHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHcc------------------------ch
Confidence 4445555555554443 2321 12234555666665565544432 23
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcch
Q 009538 402 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKG 481 (532)
Q Consensus 402 ~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (532)
.+......++.+++.+...+..++++.+.+|++.||+++|+++..+.+|..+++.+.|.+.+..+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g--------------- 376 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT--------------- 376 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc---------------
Confidence 44555666777888887777778899999999999999999999999999999999999987431
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccc
Q 009538 482 RLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPE 519 (532)
Q Consensus 482 ~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 519 (532)
+...++..+++.++..+......+++|++++||.+++
T Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 377 -PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 2345555565555555555556677777776665443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=207.46 Aligned_cols=339 Identities=15% Similarity=0.104 Sum_probs=215.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|+.+.+++.+++.++..+++++.|+++||+ ||||++..+.++++++++++.++...... ...+
T Consensus 49 s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 111 (399)
T PRK05122 49 SAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLLAAW----------------PVLS 111 (399)
T ss_pred cHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhhhcc----------------chhH
Confidence 678899999999999999999999999996 99999999999999998887765311100 0025
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
+..+++.|+++|+|.+...+....++.|++++++ |+++++++....++|.++|+.+++++.++.||++.|++..
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6789999999999999999999999999876422 2457888888999999999999999999999999988766
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 241 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (532)
+..++..+. .. +.++.++++++..
T Consensus 186 ~~~~~~~~~---~~-~~~~~~~~~~~~~---------------------------------------------------- 209 (399)
T PRK05122 186 LLALLGLLL---AR-PRPAVPPVKGERL---------------------------------------------------- 209 (399)
T ss_pred HHHHHHHHH---Hh-cCCCCCCCCccch----------------------------------------------------
Confidence 543332221 11 1111111000000
Q ss_pred cCCcccccCCCCCCCCCccchhhhhhhhhhhhhh-HhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhh
Q 009538 242 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 320 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
++ ++ ..|+.... ....+....+.......+.++ .. ...+ . .....
T Consensus 210 ---------------~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~---------~~~~~ 255 (399)
T PRK05122 210 ---------------PF----RR---VLGRVWPYGMGLALASIGFGTIATFITLYY-AA-RGWD-G---------AALAL 255 (399)
T ss_pred ---------------hH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cccc-c---------chHHH
Confidence 00 00 01111100 011111111111111111111 11 1110 0 11112
Q ss_pred hhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
....++.+++.++.+++ .+|+++| +.+..+..+.+++....... .
T Consensus 256 ~~~~~~~~~~~~~~g~l----~~r~~~~-------~~~~~~~~~~~~~~~~~~~~------------------------~ 300 (399)
T PRK05122 256 TLFGVAFVGARLLFGNL----INRLGGL-------RVAIVSLLVEILGLLLLWLA------------------------P 300 (399)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhccH-------HHHHHHHHHHHHHHHHHHHh------------------------c
Confidence 22333344444443333 4554333 45556666666665554432 2
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.+..+...++.+++.+...+.......+.+|++.||++.|+++....+|..+++.+.+.+.+..
T Consensus 301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--------------- 365 (399)
T PRK05122 301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF--------------- 365 (399)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------
Confidence 34455666788888888888877788889999999999999999999999999999999887643
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLC 504 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~ 504 (532)
++...|+..+++.+++.+..++.
T Consensus 366 -g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 366 -GYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777766655544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=206.79 Aligned_cols=142 Identities=14% Similarity=0.157 Sum_probs=125.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++.+++.++..++.++.|+++||+ |||+++.++.++++++.+++++++
T Consensus 26 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 80 (399)
T TIGR00893 26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------------------ 80 (399)
T ss_pred CChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------------------
Confidence 3678889999999999999999999999996 999999999999999999999874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|++.+...|....++.|++|+ ++|++.++++....++|.++||.+++++.+..+||+.|++.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 577899999999999999999999999999874 23456899999999999999999999998899999999988
Q ss_pred HHHHHHHHHHHHh
Q 009538 161 AFMMFLSCAMFFL 173 (532)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (532)
++..++..+..+.
T Consensus 155 ~~~~~~~~~~~~~ 167 (399)
T TIGR00893 155 GVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHHhhh
Confidence 7765555444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=215.14 Aligned_cols=135 Identities=14% Similarity=0.224 Sum_probs=117.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+.+.+++.+++.++..+++++.|+++||+ |||++++++.++.+++.+++++++ ++
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------------------~~ 180 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------------------NY 180 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc------------------------cH
Confidence 57789999999999999999999999996 999999999999999999999874 57
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
+.+++.|+++|++.+...+....++.|++|++ .|+...+++..+..+|.+++|.++.++.+ ||+.|++.++
T Consensus 181 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i 251 (505)
T TIGR00898 181 TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSL 251 (505)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHH
Confidence 88999999999999999999999999998752 22457778888999999999998877754 9999998877
Q ss_pred HHHHHHHHH
Q 009538 163 MMFLSCAMF 171 (532)
Q Consensus 163 ~~~l~~~~~ 171 (532)
..++..+..
T Consensus 252 ~~~~~~~~~ 260 (505)
T TIGR00898 252 PTFLFFLLS 260 (505)
T ss_pred HHHHHHHHH
Confidence 655554444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=222.02 Aligned_cols=366 Identities=34% Similarity=0.551 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccccccccccCCCCC
Q 009538 35 YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPN 114 (532)
Q Consensus 35 r~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~ 114 (532)
.|+++++.+++.+|++++++++..+.+ +.+.+...++++..+.++|.|+.+|+..++++|+|+++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~ 65 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED 65 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence 489999999999999999888754322 11234678999999999999999999999999999865
Q ss_pred CCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHhhcceeeec-CCCCCchhh-HH
Q 009538 115 TESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV-KPEGSPLAS-TV 192 (532)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 192 (532)
+ ++++.++++++|+++|+|.++++.+.+++.++.||.+.|.++.+.+++++++++..++++... +|.+++..+ ..
T Consensus 66 ~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~ 142 (372)
T PF00854_consen 66 D---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK 142 (372)
T ss_dssp T---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred c---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence 4 244567999999999999999999999999999999999999999999999999999988776 666666666 33
Q ss_pred HHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcccCCcccccCCCCCCCCCcc-chhhhhhhhhh
Q 009538 193 QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRL-SSMQKVEEVKV 271 (532)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 271 (532)
.+.....+++....++...+..+. ..... ...........+...+..++. ..|.. +..++.++.|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~k~ 209 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPKGSSWLDWA-LFQYS---ERSIFGIIVFIRAAVIFFPEI---------FFWALFCQVQRVEELKA 209 (372)
T ss_dssp HHHHHHHHHHCCCH-HHHHHHHHH-HHHHC---CCCCCCCCCHHHHHHHHCCCH---------HHHTTTSSTTTHHHCCH
T ss_pred HHHHHHHHHhhcccccchHHHHHh-hhhhh---hhhhhhhhhhccchhhhhhhh---------hhcccCCccceeeeeee
Confidence 333444444443332111111110 00000 000000000000000100000 00000 11234455677
Q ss_pred hhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcc-ceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCC
Q 009538 272 LIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEG 350 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (532)
+.+.++.+...+.++....+.......+...++...+ + +++|++.++++|.+.+++..|++|++.+|+.+ ++.
T Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~----~~~ 283 (372)
T PF00854_consen 210 LIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG--GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR----RGI 283 (372)
T ss_dssp HHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS--------SGGGTTHHHHHCHHHHHHHHHHCCCTTT----T--
T ss_pred eeeccccCeEEEEeeehhhhhhhHHHHhccccccccc--cccccccchhhhHHHHHHHHHHHHHHHHHhHHhh----hcc
Confidence 7777777788888888888887777777777776665 5 88999999999999999999999999988887 222
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcc
Q 009538 351 GITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ 430 (532)
Q Consensus 351 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~ 430 (532)
..+...++.+|+++..++++..+..+.++......+ ...+.+|.+..+++.+++|.+..+...+..+|.
T Consensus 284 ~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~-----------~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~ 352 (372)
T PF00854_consen 284 QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC-----------GKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEF 352 (372)
T ss_dssp ----HHHHHHH-HHHHHHHHTTTHHHH---HH---------------TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-----------CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 367888999999999999988887776444333222 234557778999999999999999989988888
Q ss_pred cCchhHHHHHHHHHHHHH
Q 009538 431 FPENMRSIGGSLAFVGFA 448 (532)
Q Consensus 431 ~P~~~rg~~~gl~~~~~~ 448 (532)
+|++..+.++|++.....
T Consensus 353 a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 353 APSRAPSSMMGIWFALSA 370 (372)
T ss_dssp TTTT-SSSSTHHHHHHH-
T ss_pred hHHhhhHHHHHHHHHHhc
Confidence 887777777777765543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=211.84 Aligned_cols=146 Identities=10% Similarity=0.099 Sum_probs=124.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+++.+.|.+++.++++++|+++||+ |||+++.++.++++++.+++.++.. .+
T Consensus 74 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~----------------------~~ 130 (465)
T TIGR00894 74 SGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG----------------------GG 130 (465)
T ss_pred CHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH----------------------cC
Confidence 567789999999999999999999999996 9999999999999999988866532 14
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F~v~ 160 (532)
+..+++.|+++|++.|...|....++.|++|+ ++|++.++++..+.++|.+++|.+++++.+.+ |||+.|++.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPP------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 56799999999999999999999999999874 33467899999999999999999999998884 999999998
Q ss_pred HHHHHHHHHHHHhhcc
Q 009538 161 AFMMFLSCAMFFLGSR 176 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~ 176 (532)
++..++..++++...+
T Consensus 205 ~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 205 GIVGCAWSLLWFVFPA 220 (465)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8876655554444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=203.58 Aligned_cols=329 Identities=12% Similarity=0.040 Sum_probs=212.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+++.++..+++++.|+++||+ ||||+++.+.++..++.++++++...+ ..+
T Consensus 32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 91 (365)
T TIGR00900 32 SASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVALLG-------------------GLN 91 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHcC-------------------CCc
Confidence 567889999999999999999999999996 999999999999999998888875211 026
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|+++|++.+...|...+++.|++|++ +|++.++++....++|.++||.+++++.++.|||+.|++.+
T Consensus 92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 788999999999999999999999999998742 34568999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchh-hHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLA-STVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (532)
+..++..+..+..+++.++ ++++++.+ +..+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------------------------~---- 200 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELA-ASEIQALSNAVLRDT----------------------------------------R---- 200 (365)
T ss_pred HHHHHHHHHHHhcccccCC-CccccccchhHHHHH----------------------------------------H----
Confidence 7655554433332211100 00000000 000000 0
Q ss_pred ccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhH-HHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhh
Q 009538 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPI-WASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 319 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
..+ ......+.+...+.. +.....+........+.+.......+. ...+..
T Consensus 201 ---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 252 (365)
T TIGR00900 201 ---------------EGI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGS--------THYGWV 252 (365)
T ss_pred ---------------hHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch--------HHHHHH
Confidence 000 000001111111111 111111111111111222111111110 112233
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
.....++.+++.++.+++ .+|.++| +.+..+..+.+++++..... .+
T Consensus 253 ~~~~~~~~~~~~~~~~~l----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----------------------~~ 299 (365)
T TIGR00900 253 LAAFGLGALLGALLLGLL----GRYFKRM-------ALMTGAIFVIGLAILVVGLT----------------------PP 299 (365)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhchh-------HHHHHHHHHHHHHHHHHHhh----------------------ch
Confidence 333444445555554332 4443332 45555666666665555443 11
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
+.+..++..++.+++.+...+...++..|.+|++.||+++|+.+....++..+++.+.+.+.|
T Consensus 300 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 300 -NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777888999998899999999999999999999999999999999999999998876
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=213.06 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 009538 10 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 89 (532)
Q Consensus 10 ~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 89 (532)
.+++.++..+++++.|+++||+ |||+++.++.++++++++++++++++.++.. .....+++.|
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~----------------~a~~~l~~~R 125 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIPSYATIGI----------------WAPILLLLCK 125 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhcccHHHHHH----------------HHHHHHHHHH
Confidence 4667788999999999999996 9999999999999999999999864321000 0112489999
Q ss_pred HHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--------ccccchhhhHHHH
Q 009538 90 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPA 161 (532)
Q Consensus 90 ~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--------~~~gw~~~F~v~~ 161 (532)
+++|+|.|+..|....+++|++|+++ |++..++...+.++|..+|+.+...+. .++|||++|++.+
T Consensus 126 ~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~ 199 (490)
T PRK10642 126 MAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIAL 199 (490)
T ss_pred HHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHH
Confidence 99999999999999999999987532 244677777777888887776554432 2689999999977
Q ss_pred HHHHH
Q 009538 162 FMMFL 166 (532)
Q Consensus 162 ~~~~l 166 (532)
+..++
T Consensus 200 ~~~l~ 204 (490)
T PRK10642 200 PLGII 204 (490)
T ss_pred HHHHH
Confidence 65443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=211.87 Aligned_cols=141 Identities=20% Similarity=0.275 Sum_probs=120.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.+++.++++. .+
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 126 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA---------------------LS 126 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc---------------------cc
Confidence 368899999999999999999999999996 99999999999999999999776421 24
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhh---hhccccccchhhhH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI---VYVQSDVSWAWGLG 158 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~---g~i~~~~gw~~~F~ 158 (532)
++.++++|+++|+|.|...+....+++|++|+++ |++.+++++...++|.++++.++ +......+||+.|+
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 5689999999999999999999999999987532 34578999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHH
Q 009538 159 IPAFMMFLSCAM 170 (532)
Q Consensus 159 v~~~~~~l~~~~ 170 (532)
+.++..++..+.
T Consensus 201 ~~~~~~~~~~~~ 212 (481)
T TIGR00879 201 LQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHH
Confidence 966655544443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=209.14 Aligned_cols=404 Identities=14% Similarity=0.120 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
-+.++++|.+|.++++..+|+++||+ |||..++++.++..++.++..++-..+ ++.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~---------------------~~e~l 119 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP---------------------SFEML 119 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh---------------------hHHHH
Confidence 36789999999999999999999996 999999999999999999988875433 68899
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhh-hh-ccccccchhhhHHHHHH
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI-VY-VQSDVSWAWGLGIPAFM 163 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~-g~-i~~~~gw~~~F~v~~~~ 163 (532)
+++|++.|+..|......+.|+.|..|. +.||..-.....+..+|.++|..++ .. +.....|++.+.++++.
T Consensus 120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~ 193 (485)
T KOG0569|consen 120 ILGRLIVGLACGLSTGLVPMYLTEISPK------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIP 193 (485)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhcChh------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHH
Confidence 9999999999999999999999998664 2334567777888889998885553 22 34566799999998886
Q ss_pred HHHHHHHH--Hhhcceeeec-CCCCCchhhHHHHHHHHHHhcccCC-CCCCcccccccCCcccccCCCCCCCcccchhhh
Q 009538 164 MFLSCAMF--FLGSRLYAKV-KPEGSPLASTVQVFVAAIKKRHLKL-PEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 239 (532)
Q Consensus 164 ~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (532)
.++.++++ +..+|+|... +.+.++.++..+.+ ++.+. +++.|+...+.+.++
T Consensus 194 ~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y------~G~~~~~~~~e~~~~e~~~~~------------------ 249 (485)
T KOG0569|consen 194 ALLQLALLPFLPESPKYLLIKKGDEEEARKALKFY------RGKEDVEAEIEEMLREIEEEE------------------ 249 (485)
T ss_pred HHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHH------hCCCcchhHHHHHHHHHHHhc------------------
Confidence 66655543 3345666443 33322222222211 11110 000000000000000
Q ss_pred cccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhh
Q 009538 240 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
.++.+....+..+.. ...++.....+.+.....+........+++.+......... ..+..+...
T Consensus 250 ---------~~~~~~~sl~~~~~~--~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~----~a~~an~~~ 314 (485)
T KOG0569|consen 250 ---------LEKKKQISLRQLLKN--PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE----EAQYANLGI 314 (485)
T ss_pred ---------cccccCCcHHHHhcC--cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH----HHHHHHHHH
Confidence 000011111111110 01122222222222222222211111222111111111110 111223344
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
+.++.+..+++..+ .+|++|| ..++.++.++.++...+.+......+.. +
T Consensus 315 g~v~~~~t~~~~~l--------id~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~~---------------~ 364 (485)
T KOG0569|consen 315 GIVNLLSTLVSPFL--------IDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSFG---------------S 364 (485)
T ss_pred HHHHHHHHHHHHHH--------HHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------h
Confidence 45555555555555 5555766 5666666666666555554433221110 1
Q ss_pred chHHHHHHHHHHHHHHhH-hhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 009538 400 LSGLWLIPQLSLIGFSEA-FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~-~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (532)
+-.+..+...++..+... ...|..+-+.+|.+|++.|+.++++..+.+++.+++.....+.+.+..+
T Consensus 365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------ 432 (485)
T KOG0569|consen 365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------------ 432 (485)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 112222334444333333 4477889999999999999999999999999999999999999887542
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccccccc
Q 009538 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAME 523 (532)
Q Consensus 479 ~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (532)
.++|..+++.+++..+..+...||+|+|+.+|..++.+++
T Consensus 433 -----~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 433 -----PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred -----chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 2678888889999999999999999999887765554433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=207.84 Aligned_cols=137 Identities=11% Similarity=0.117 Sum_probs=121.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..+.+++.+.+.++..++++++|+++||+ |||+++.++.++++++.+++++++
T Consensus 55 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 109 (434)
T PRK11663 55 LSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFSS------------------------ 109 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHHh------------------------
Confidence 3677899999999999999999999999996 999999999999999999999885
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.+++.|++.|++.|...+....++.|++++ ++|++.+++++...++|..++|.+++++.+++|||+.|++.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR------TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 577899999999999999999999999999874 23456899999999999999999999999999999999987
Q ss_pred HHHHHHHH
Q 009538 161 AFMMFLSC 168 (532)
Q Consensus 161 ~~~~~l~~ 168 (532)
++..++..
T Consensus 184 ~i~~~~~~ 191 (434)
T PRK11663 184 GIIAIVVG 191 (434)
T ss_pred HHHHHHHH
Confidence 77554443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=206.28 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=125.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.|.++..++.+++|+++||+ ||||+++.+.++++++.+++++++ +
T Consensus 43 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------~ 97 (471)
T PRK10504 43 SPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCALSG------------------------T 97 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHhC------------------------C
Confidence 567788999999999999999999999996 999999999999999999888764 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
+..++++|+++|+|.|+..|....++.|.+|+ +++++.++.+....++|..+||.+++++.++.|||+.|++..
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPR------EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 67899999999999999999999999998763 234568889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhcce
Q 009538 162 FMMFLSCAMFFLGSRL 177 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~ 177 (532)
+...+..+......|+
T Consensus 172 ~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 172 PVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7766665555444444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-22 Score=209.87 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=118.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++.+++|+++||+ |||++++.+.+++.++.+++++++ +
T Consensus 52 s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------------------~ 106 (455)
T TIGR00892 52 TYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS------------------------N 106 (455)
T ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh------------------------h
Confidence 568889999999999999999999999995 999999999999999999998875 3
Q ss_pred HHHHH-HHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 82 LAFLF-TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~-~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
++.++ ..|+++|++.|...+...+++.++++ ++|+++.++.+.+.++|..++|.+++++.+.+|||+.|++.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 55555 45799999999876777788889874 12356899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhh
Q 009538 161 AFMMFLSCAMFFLG 174 (532)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (532)
++..++..+..++.
T Consensus 180 ~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 180 GGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHh
Confidence 88766554443333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=200.47 Aligned_cols=140 Identities=16% Similarity=0.034 Sum_probs=119.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|+.+.+++.+.+.+++.+++++.|+++||+ ||||+++++..++.++.+++++++ +
T Consensus 46 s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------------------~ 100 (406)
T PRK15402 46 GAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------------------------S 100 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------------------------c
Confidence 567889999999999999999999999996 999999999999999999988874 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.+++.|+++|++.+...+...+++.|.+++++ +.+.+++.+....+|..+||.+++++.++.+||+.|++.+
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~ 174 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFA 174 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence 6789999999999999988999999999987422 2346777777888899999999999988899999999877
Q ss_pred HHHHHHHHHHH
Q 009538 162 FMMFLSCAMFF 172 (532)
Q Consensus 162 ~~~~l~~~~~~ 172 (532)
+..++..+..+
T Consensus 175 ~~~~~~~~~~~ 185 (406)
T PRK15402 175 ALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHH
Confidence 76665544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=212.21 Aligned_cols=366 Identities=13% Similarity=0.149 Sum_probs=220.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+|+.+.|.++..++.+++|+++||+ |||++++++.+++.++++++++++ +
T Consensus 35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------~ 89 (485)
T TIGR00711 35 SLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVAP------------------------N 89 (485)
T ss_pred ChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCcC------------------------C
Confidence 567889999999999999999999999996 999999999999999999999874 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
+..++++|+++|++.+...|...+++.|++|+ ++|++.+++++....+|..+||.+++++.++++||+.|++.+
T Consensus 90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP------EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 77899999999999999999999999999874 234568999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHH----HHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchh
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVA----AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (532)
+..++..+..+...|+.++. +.++.+.....+.. .......+.++.++. . ........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~----~------------~~~~~~~~ 225 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWF----D------------SNEILILS 225 (485)
T ss_pred HHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCC----C------------chHHHHHH
Confidence 76655554444433332111 11111111100000 000000000000000 0 00000000
Q ss_pred h------hcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcc
Q 009538 238 K------AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTH 311 (532)
Q Consensus 238 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (532)
. ..... ++. +.+.+..+++ ..++++.....+..++....++...... +.+.......+.
T Consensus 226 ~~~~~~~~~~~~--~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~g~s~------ 290 (485)
T TIGR00711 226 ITGLVAIIAFVV--WEL-TDDNPLVDLR-----LFKYRNFTIGCVYMSLLGLGLYGSFYLL-PLYLQQVLGYTA------ 290 (485)
T ss_pred HHHHHHHHHHHH--HHH-cCCCCccCHH-----HHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCH------
Confidence 0 00000 000 0000001110 1111111111111111111111111111 111111111110
Q ss_pred ceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccc
Q 009538 312 FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE 391 (532)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (532)
...+.......++.+++.++..++ .+|+++| +.+..+..+.+++..+.....
T Consensus 291 --~~~g~~~~~~~~~~~~~~~~~g~l----~~r~~~~-------~~~~~g~~~~~~~~~~~~~~~--------------- 342 (485)
T TIGR00711 291 --LQAGLHILPVGLAPMLSSPIAGRM----GDKIDPR-------KLVTIGLILYAVGFYWRAFTF--------------- 342 (485)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HhhcCcH-------HHHHHHHHHHHHHHHHHhccC---------------
Confidence 112233344455556666664443 5554433 556677777766665554210
Q ss_pred ccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 392 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 392 ~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
....+.+..+...++.++|.+...++......+..|++.+|+++|+.+..+.+|+.+++.+.+.+.+.
T Consensus 343 -----~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 343 -----TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234556666678889999888877788888999999999999999999999999999999988763
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=202.04 Aligned_cols=341 Identities=13% Similarity=0.083 Sum_probs=213.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..+.+++.+.+.++..++++++|+++||+ ||||+++.+.+++.++.+........+. ....
T Consensus 48 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 110 (392)
T PRK12382 48 FGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLAAILPV----------------SAPF 110 (392)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhhhcccc----------------chhH
Confidence 3678899999999999999999999999996 9999999999888877655433211110 0013
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
++..++++|+++|+|.+...|...+++.|.+|++ +|++++++++.+.+.|.++||.+++++.+++||++.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 6788999999999999999998889999988642 2345799999999999999999999999989999987765
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhc
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (532)
.+..++... .. ++.++.++++++.. +.
T Consensus 185 ~~~~~~~~~---~~-~~~~~~~~~~~~~~--------------------------------------------~~----- 211 (392)
T PRK12382 185 MVLPLLAWA---FN-GTVRKVPAHAGERP--------------------------------------------SL----- 211 (392)
T ss_pred HHHHHHHHH---HH-HhccCCCCCcccCc--------------------------------------------hH-----
Confidence 544322221 11 11111111000000 00
Q ss_pred ccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhh
Q 009538 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 320 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
++..+..++. .+...+....+.......+.+ ..+ .... ..+...
T Consensus 212 ----------------------~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~-~~~-----~~~~------~~~~~~ 255 (392)
T PRK12382 212 ----------------------WSVVGLIWKP--GLGLALQGVGFAVIGTFVSLY-FAS-----KGWA------MAGFTL 255 (392)
T ss_pred ----------------------HHHHHHHHHh--HHHHHHHHHHHhHHHHHHHHH-HHh-----cCCc------hhHHHH
Confidence 0000000000 000111111111111111111 111 1110 011112
Q ss_pred hhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
....++.+++.++.+++ .+|+++| +.+..+..+.+++.+..... .
T Consensus 256 ~~~~~~~~~~~~~~g~l----~~r~g~~-------~~~~~~~~~~~~~~~~~~~~------------------------~ 300 (392)
T PRK12382 256 TAFGGAFVLMRVLFGWM----PDRFGGV-------KVAIVSLLVETVGLLLLWLA------------------------P 300 (392)
T ss_pred HHHHHHHHHHHHHHHHH----HHhcCCC-------eehHHHHHHHHHHHHHHHHc------------------------c
Confidence 22333444445554443 5555444 34555666666665544432 1
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.+..++..++.+++.+...+.......+.+|++.||++.|+++....+|+.+++.+.+.+.|..
T Consensus 301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~--------------- 365 (392)
T PRK12382 301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF--------------- 365 (392)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 34455566777888888888887888899999999999999999999999999999999998743
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLC 504 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~ 504 (532)
++...|...+++.+++.+..+..
T Consensus 366 -g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 -GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -CchHHHHHHHHHHHHHHHHHHhh
Confidence 24567777777777666655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=210.02 Aligned_cols=148 Identities=11% Similarity=0.037 Sum_probs=119.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.++|.+++.++++++|+++||+ ||||++.+++++++++.++.++.... ..+
T Consensus 61 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------------~~~ 120 (467)
T PRK09556 61 LSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------------GSV 120 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------------ccc
Confidence 3678899999999999999999999999996 99999999999988888777663100 013
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc---cchhhh
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV---SWAWGL 157 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~---gw~~~F 157 (532)
++..+++.|+++|++.|...|....+++|++|+++ |+++++++....++|.++++.+..++.+.. +||..|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 68899999999999999999999999999998632 345789999999999999999887765543 699999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009538 158 GIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~ 174 (532)
.+.++..++..+..+..
T Consensus 195 ~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 195 IFPSIIALIIGFIGLRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88776655444444433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=214.60 Aligned_cols=405 Identities=16% Similarity=0.131 Sum_probs=245.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHH
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 84 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (532)
+.+|+.+++.++..+++++.|+++|++ |||++++++.+++.+|++++++|. |+.+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~------------------------~~~~ 144 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP------------------------SWYQ 144 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh------------------------hHHH
Confidence 458999999999999999999999996 999999999999999999999995 6889
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-ccchhhhHHHHHH
Q 009538 85 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPAFM 163 (532)
Q Consensus 85 l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-~gw~~~F~v~~~~ 163 (532)
++++|+++|+|.|.....++.|++|+.|+ +.|+...+.++...++|..+|.+++....+. ++||..+++..+.
T Consensus 145 l~~GR~l~G~g~G~~~~~~piy~sEiap~------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~ 218 (513)
T KOG0254|consen 145 LIVGRILTGLGVGGASVLAPVYISEIAPA------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP 218 (513)
T ss_pred HHHHHHHhccchhhhhhcchhhHhhcCCh------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence 99999999999999999999999998653 4456789999999999999996665555433 5999998887775
Q ss_pred HHHHHHHHHh--hcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcc
Q 009538 164 MFLSCAMFFL--GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 241 (532)
Q Consensus 164 ~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (532)
.++..+.++. .+|++..++.+..+.....+.+ +..+ +++.+.++.. +.....
T Consensus 219 ~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l------~g~~-~~~~~~~~~~-------------------~~~~~~ 272 (513)
T KOG0254|consen 219 AVILALGMLFLPESPRWLIEKGRLEEAKRSLKRL------RGLS-PEDVEVELEL-------------------LKIKLL 272 (513)
T ss_pred HHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHH------hCCC-CcchHHHHHH-------------------HHHHHH
Confidence 4444443222 3455443332222222222111 1111 1010000000 000000
Q ss_pred cCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhhh
Q 009538 242 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 321 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
.+...... ...|..+.. ....|+++..+.+..+...........+...+.+....+.. . .........
T Consensus 273 ----~~~~~~~~-~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~----~-~~~~~~~~~ 340 (513)
T KOG0254|consen 273 ----VEAEVAEG-KASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD----T-FLASIILGV 340 (513)
T ss_pred ----Hhhhcccc-cccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc----h-HHHHHHHHH
Confidence 00000000 000110000 01233333333333333222222211222111111111100 0 122233344
Q ss_pred hhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch
Q 009538 322 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS 401 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (532)
.+.++.++...+ .+|++|| ..++.|...+.+++++.+.......+.... .....
T Consensus 341 v~~~~t~~~~~l--------vd~~gRr-------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 394 (513)
T KOG0254|consen 341 VNFLGTLVATYL--------VDRFGRR-------KLLLFGAAGMSICLVILAVVGVFALYYPNS-----------SKGAG 394 (513)
T ss_pred HHHHHHHHHHHH--------HHHhccH-------HHHHHhHHHHHHHHHHHHHHHHHhccCCCc-----------ccchh
Confidence 455555555444 4444555 677888888888888777654322111000 11234
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcch
Q 009538 402 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKG 481 (532)
Q Consensus 402 ~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (532)
++.++..++++........+..|.+..|.+|.+.|+.+.++....+++.+.+-......+....+
T Consensus 395 ~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--------------- 459 (513)
T KOG0254|consen 395 WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG--------------- 459 (513)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 44555555566666667777788899999999999999999999999999888777776654221
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHhhhcccccCCCCCcccc
Q 009538 482 RLDYFYYLVAALGLLNFG-FFLLCAKWYKYKGSGDGAPEV 520 (532)
Q Consensus 482 ~~~~~~~~~~~~~vv~~~-~~~~~~~~~~~~~~~~~~~~~ 520 (532)
....|..+++++.+... +++++.+|+|+++.|+.+...
T Consensus 460 -~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 460 -IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred -ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 13456666677776666 788889999999988765543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-22 Score=201.81 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=119.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++
T Consensus 35 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------------------------ 89 (377)
T TIGR00890 35 VGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------------------------ 89 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH------------------------
Confidence 3678899999999999999999999999996 999999999999999999999985
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|++.|...+....++.+++|+ +|+++.+.+....++|.++++.+.+.+.+..|||+.|++.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 677899999999999998888888888888752 1345788999999999887766767776778999999998
Q ss_pred HHHHHHHHHHHH
Q 009538 161 AFMMFLSCAMFF 172 (532)
Q Consensus 161 ~~~~~l~~~~~~ 172 (532)
++..++..+..+
T Consensus 163 ~~~~~~~~~~~~ 174 (377)
T TIGR00890 163 GIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHHHHHHH
Confidence 876655544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=203.05 Aligned_cols=138 Identities=16% Similarity=0.255 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHH---HHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 7 TTLINIFSGTTN---FATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 7 ~~i~~~~~~~~~---~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
+++.+.+..++. ++++++|+++||+ ||||++..+.++++++++++++++++.+.. ..+..
T Consensus 63 ~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 125 (432)
T PRK10406 63 LQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACLPGYETIG----------------TWAPA 125 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhcCCchhHH----------------HHHHH
Confidence 344455555444 8999999999996 999999999999999999999986432100 01245
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--------ccccchh
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAW 155 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--------~~~gw~~ 155 (532)
.+++.|+++|+|.|...|...++++|++|+++ |++..+..+...+.|.++++.++..+. ..+|||+
T Consensus 126 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~ 199 (432)
T PRK10406 126 LLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRI 199 (432)
T ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 69999999999999999999999999987522 245778888888889888887765543 2689999
Q ss_pred hhHHHHHHHHHH
Q 009538 156 GLGIPAFMMFLS 167 (532)
Q Consensus 156 ~F~v~~~~~~l~ 167 (532)
+|++.++..++.
T Consensus 200 ~F~i~~~~~ll~ 211 (432)
T PRK10406 200 PFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHH
Confidence 999877765443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=198.94 Aligned_cols=137 Identities=15% Similarity=0.199 Sum_probs=122.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++++++.++..+++++.|+++||+ ||||++..+.++++++.+++++++
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~------------------------ 106 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFAN------------------------ 106 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHHC------------------------
Confidence 3678889999999999999999999999996 999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.+++.|+++|++.|...|...+++.|++|+ ++|++++++.....++|.++||.+++++.+++|||+.|++.
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 678899999999999999999999999999864 23356899999999999999999999999999999999997
Q ss_pred HHHHHHHH
Q 009538 161 AFMMFLSC 168 (532)
Q Consensus 161 ~~~~~l~~ 168 (532)
++..++..
T Consensus 181 ~~l~~~~~ 188 (394)
T PRK10213 181 AVMGVLCI 188 (394)
T ss_pred HHHHHHHH
Confidence 76554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=201.32 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=123.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.++.+++|.+++.++++++|+++||+ |||++++.+..+++++++++++++ +
T Consensus 49 ~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------------~ 103 (413)
T PRK15403 49 DVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------------S 103 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------------C
Confidence 567789999999999999999999999996 999999999999999999999874 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
+..++++|+++|++.+...+....++.|+++++ ++++.++++....++|..+||.+++++.+++|||+.|++.+
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 778999999999999877777788888987642 23457899999999999999999999998899999999988
Q ss_pred HHHHHHHHHHHhhcc
Q 009538 162 FMMFLSCAMFFLGSR 176 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~ 176 (532)
+..++..+..+...|
T Consensus 178 ~~~~i~~~~~~~~lp 192 (413)
T PRK15403 178 VMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHHHHHHHhCC
Confidence 776665554333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=198.14 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=122.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++++++|+++||+ |||+++.++..+++++.+++++++ +
T Consensus 36 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~~------------------------~ 90 (382)
T PRK10091 36 SIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLSS------------------------S 90 (382)
T ss_pred CHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHhC------------------------c
Confidence 567889999999999999999999999996 999999999999999999999985 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.+++.|+++|++.|...+....++.|+++++ ++++.++.+..+..+|..+||.+++++.+..+||+.|++.+
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 788999999999999999888888889987642 23457888889999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 009538 162 FMMFLSCAMFF 172 (532)
Q Consensus 162 ~~~~l~~~~~~ 172 (532)
+..++..+..+
T Consensus 165 ~~~~~~~~~~~ 175 (382)
T PRK10091 165 VFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHH
Confidence 76555544333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=202.24 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=125.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++.++|.+++.+++++.|+++||+ |||+++..+.++++++++++++++
T Consensus 40 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~------------------------ 94 (412)
T TIGR02332 40 LSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFAT------------------------ 94 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678899999999999999999999999996 999999999999999999999985
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc------cccch
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------DVSWA 154 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~------~~gw~ 154 (532)
++..++++|+++|++.|...|....++.|++|+ ++|++.+++++....+|.++++.+++++.+ ..|||
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 567899999999999999999999999999874 234568999999999999999999998763 46999
Q ss_pred hhhHHHHHHHHHHHHHHHhhcce
Q 009538 155 WGLGIPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 155 ~~F~v~~~~~~l~~~~~~~~~~~ 177 (532)
+.|++.++..++..++.++..|+
T Consensus 169 ~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 99999877655544444444343
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=205.27 Aligned_cols=375 Identities=15% Similarity=0.149 Sum_probs=236.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|.++.+++.+++..|+.++++++|+++||| |-|+++..+.++.++++++...+.. .
T Consensus 70 ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~----------------------~ 126 (466)
T KOG2532|consen 70 WSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS----------------------I 126 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH----------------------h
Confidence 4678999999999999999999999999996 9999999999999999999999874 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-ccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-~gw~~~F~v 159 (532)
+++.+++.|++||++.|...|+...+.+.|.|+. +|++..++.+.+..+|.+++..++|++.+. +||+++|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 3457899999999999999999999999999863 335689999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhh
Q 009538 160 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 239 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (532)
.++..++..++++....+.+.+.|.-++.+ . ....+++..
T Consensus 201 ~g~~g~i~~~~w~~~~~d~P~~h~~is~~E--l---~~I~~~k~~----------------------------------- 240 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYSDSPSKHPNISEKE--L---KYIEKGKSE----------------------------------- 240 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHH--H---HHHHhcccc-----------------------------------
Confidence 999888888877776655333222211111 0 000000000
Q ss_pred cccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhh
Q 009538 240 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
...+..+..||+... .+......++..+.....++...+++++++- .....+.. .++.+
T Consensus 241 --------~~~~~~~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~-~VL~f~v~--------~~G~~ 299 (466)
T KOG2532|consen 241 --------AHVKKKPPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLPTYLK-EVLGFDVR--------ETGFL 299 (466)
T ss_pred --------cccCCCCCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhCCChh--------hhhHH
Confidence 000000234553211 1112222233334444445555545544432 22222211 23445
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM--AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.++..+...+...+.+.+ .||+..|.-.....+++ .++....++.++..+...
T Consensus 300 salP~l~~~~~k~~~g~l----sD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~--------------------- 354 (466)
T KOG2532|consen 300 SALPFLAMAIVKFVAGQL----SDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS--------------------- 354 (466)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC---------------------
Confidence 555555544444443333 33333321112223344 334444444444444431
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
..+.+..++.+.+.-...++..++.+.-..+.+|+. .+..+|+.+....+++.++|.+.+.+.. .+
T Consensus 355 -~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~-a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~----------- 420 (466)
T KOG2532|consen 355 -DEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH-AGFVMGIINFVGALAGFIAPLLVGIIVT-DN----------- 420 (466)
T ss_pred -CCcchHHHHHHHHHHHHcccchhhhHhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHheeeEeC-CC-----------
Confidence 112222222222222222233334343334447755 7999999999999999999999988763 10
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCA 505 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~ 505 (532)
+.+....+|++.+++.+++.+++.++.
T Consensus 421 -t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 421 -TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred -CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 223457799999999998888777764
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=199.29 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=119.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+++.+++ +
T Consensus 44 s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~------------------------~ 98 (400)
T PRK11646 44 AAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMAIAH------------------------E 98 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHHHhc------------------------c
Confidence 567888999999999999999999999996 999999999999999999998874 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.+++.|+++|++.+...|...+++.|.+|+ ++|++++++.+...++|..+||.+++++. ++|||+.|++.+
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRP------HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 77899999999999999999999999998874 23356899999999999999999999998 789999999987
Q ss_pred HHHHHHHHH
Q 009538 162 FMMFLSCAM 170 (532)
Q Consensus 162 ~~~~l~~~~ 170 (532)
+..++..+.
T Consensus 172 ~~~~~~~i~ 180 (400)
T PRK11646 172 VLFVLAAAF 180 (400)
T ss_pred HHHHHHHHH
Confidence 765555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=198.26 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=118.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|+.+.+++.+++.++..++++++|+++||+ |||+++.++.++++++.+++++++ +
T Consensus 51 s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------------------~ 105 (426)
T PRK12307 51 TDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLAS------------------------G 105 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHh------------------------H
Confidence 577889999999999999999999999996 999999999999999999999985 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|+++|+|.|...+....++.|++|++ +|+++.+++..+..+|.++++.+.+.+.+..|||+.|++.+
T Consensus 106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 778999999999999999999999999998752 23557899999999999999999999999999999999865
Q ss_pred HH
Q 009538 162 FM 163 (532)
Q Consensus 162 ~~ 163 (532)
+.
T Consensus 180 ~~ 181 (426)
T PRK12307 180 LP 181 (426)
T ss_pred HH
Confidence 43
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=197.54 Aligned_cols=339 Identities=12% Similarity=0.048 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+++++++ +++.+
T Consensus 56 ~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~ 110 (408)
T PRK09874 56 SGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMVLMGLAQ------------------------NIWQF 110 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHHHHHHHh------------------------hHHHH
Confidence 47888899999999999999999996 999999999999999998888764 57789
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHH
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMF 165 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~ 165 (532)
++.|++.|++.+ ..|....++.|+++++ +|++..+++....++|.+++|.+++++.+.++||+.|++.++..+
T Consensus 111 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 183 (408)
T PRK09874 111 LILRALLGLLGG-FVPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLF 183 (408)
T ss_pred HHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999866 4577788888887642 234578889999999999999999999988999999999887666
Q ss_pred HHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcccCCc
Q 009538 166 LSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPE 245 (532)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (532)
+..+..+...++.+ ++.+++.....+ ...
T Consensus 184 ~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~---------------------------------------------- 212 (408)
T PRK09874 184 LCFLVTLFCIRENF--QPVSKKEMLHMR---EVV---------------------------------------------- 212 (408)
T ss_pred HHHHHHHHHhccCc--ccccchhhhHHH---HHH----------------------------------------------
Confidence 55554433333211 010000000000 000
Q ss_pred ccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccch---hhhhhhhccCcccCCccceeChhhhhhh
Q 009538 246 DQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT---YVVFQALQSDRRVGNTHFKIPAASYAIF 322 (532)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
+..++.+.....+.. ...+........+ .+...........+ ...+.....
T Consensus 213 ------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~ 266 (408)
T PRK09874 213 ------------------TSLKNPKLVLSLFVT---TLIIQVATGSIAPILTLYVRELAGNVSNIA-----FISGMIASV 266 (408)
T ss_pred ------------------HhCcCCchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchHHH-----HHHHHHHHH
Confidence 000001111111111 1111111111111 11111000000000 001122222
Q ss_pred hhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchH
Q 009538 323 SMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSG 402 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (532)
..++.++..+..+++ .+|+++| +.+..+..+..++++..... .+.
T Consensus 267 ~~l~~~~~~~~~g~l----~dr~g~~-------~~~~~~~~~~~~~~~~~~~~------------------------~~~ 311 (408)
T PRK09874 267 PGVAALLSAPRLGKL----GDRIGPE-------KILITALIFSVLLLIPMSFV------------------------QTP 311 (408)
T ss_pred HHHHHHHHHHHHHHH----Hhccccc-------hhHHHHHHHHHHHHHHHHHh------------------------ccH
Confidence 333444445554333 5555444 45555655555554443332 134
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchh
Q 009538 403 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 482 (532)
Q Consensus 403 ~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (532)
+...+..++.+++.+...+...++..+..|++.+|+.+++++..+.+|..+++.+.+.+.+.. +
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~----------------g 375 (408)
T PRK09874 312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY----------------G 375 (408)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc----------------c
Confidence 555566677888888888888889999999999999999999999999999999999887643 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 009538 483 LDYFYYLVAALGLLNFGFFLLC 504 (532)
Q Consensus 483 ~~~~~~~~~~~~vv~~~~~~~~ 504 (532)
+...|++.+++.+++.+..+..
T Consensus 376 ~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 376 FRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5667887777777776665544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-20 Score=190.76 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=125.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.++..++++++|+++||+ |||+++..+.++..++.+++++++
T Consensus 37 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 91 (385)
T TIGR00710 37 TPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLALSN------------------------ 91 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc------------------------
Confidence 3678899999999999999999999999996 999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|++.+...+...+++.|++|+ ++|++.++..+...++|..+||.+++++.++++||+.|++.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPG------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 577899999999999999999999999999874 23456899999999999999999999999989999999987
Q ss_pred HHHHHHHHHHHHhhc
Q 009538 161 AFMMFLSCAMFFLGS 175 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (532)
++..++..+..+...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 166 SLAGILLSALIFFIL 180 (385)
T ss_pred HHHHHHHHHHHHHhC
Confidence 776555555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=191.03 Aligned_cols=317 Identities=21% Similarity=0.287 Sum_probs=229.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++.++.|+++||+ ||||.+.++..+..++.+++.++. +
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------~ 86 (352)
T cd06174 32 SASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAFAS------------------------S 86 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHhc------------------------c
Confidence 567889999999999999999999999996 999999999999999999998874 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|++.|++.+...+...+++.|++|++ +|++.++..+...++|..+||.+++.+.+..+||+.|++.+
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 778999999999999999999999999998752 23458999999999999999999999999899999999988
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 241 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (532)
+..++..+......|+ ..
T Consensus 161 ~~~~~~~~~~~~~~~~-------------~~------------------------------------------------- 178 (352)
T cd06174 161 ILGLLLALLLLFLLRL-------------LL------------------------------------------------- 178 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------HH-------------------------------------------------
Confidence 7766655543322100 00
Q ss_pred cCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhhh
Q 009538 242 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 321 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
. ..+..+.............+. +.....+.+. ...+....
T Consensus 179 ----------------------------~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~ 218 (352)
T cd06174 179 ----------------------------L---LALAFFLLSFGYYGLLTYLPL-YLQEVLGLSA--------AEAGLLLS 218 (352)
T ss_pred ----------------------------H---HHHHHHHHHhHHHHHHHHHHH-HHHHhcCCCH--------HHHHHHHH
Confidence 0 000011111111111111111 1111101111 11233444
Q ss_pred hhhhhhHhHHhhhccchhhhccccccCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 322 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ-RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
...++..++.++..++ .+|.++| + .+..+..+..++.+..... .
T Consensus 219 ~~~~~~~i~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~------------------------~ 263 (352)
T cd06174 219 LFGLGGILGALLGGLL----SDRLGRR-------RLLLLIGLLLAALGLLLLALA------------------------P 263 (352)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhh-------hHHHHHHHHHHHHHHHHHHHh------------------------c
Confidence 5555556666664443 6665554 4 6677777777777666653 2
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.+......++.+++.+...+...++..|..|++.|++.+|+.+..+.++..+++.+.+.+.+..
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~--------------- 328 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG--------------- 328 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------
Confidence 35667778889999999999999999999999999999999999999999999999999987532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 009538 481 GRLDYFYYLVAALGLLNFGFFL 502 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~ 502 (532)
++...++..+++.+++.+..+
T Consensus 329 -~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 329 -GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred -CcchHHHHHHHHHHHHHHHhe
Confidence 234567777777766665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=192.35 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=114.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHH-HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF-ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~-~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
|+.+.+++.+.+.+...+.+++.|+++||+ ||||.++. +..+..++.+++++++
T Consensus 31 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~------------------------ 85 (375)
T TIGR00899 31 RPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAWNR------------------------ 85 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 577889999999999999999999999996 99987654 5556667777887764
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.+++.|+++|.+.+...|....+..|+.++ ++| .+....+......++|.++||.+++++.+++|||+.|++.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADR---TGR-EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh---cch-hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 567788899999988888888888888886543 221 2222356777788999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcce
Q 009538 161 AFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (532)
++..++..+..+...|+
T Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPS 178 (375)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 87665555444433343
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=196.86 Aligned_cols=129 Identities=11% Similarity=0.145 Sum_probs=100.5
Q ss_pred HHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 009538 14 SGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMV 93 (532)
Q Consensus 14 ~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 93 (532)
.++..+++++.|+++||+ |||++++++.++++++++++++++++.+.. ..+...+++.|+++|
T Consensus 74 ~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~R~l~G 136 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPSFSTIG----------------WWAPVLLVTLRAIQG 136 (438)
T ss_pred HHHHhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCcHHHHH----------------HHHHHHHHHHHHHHH
Confidence 345668889999999996 999999999999999999999986432100 011236889999999
Q ss_pred HhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--------ccccchhhhHHHHHHHH
Q 009538 94 IGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMF 165 (532)
Q Consensus 94 ~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--------~~~gw~~~F~v~~~~~~ 165 (532)
++.|...|....++.|++|+++ |+...+....+..+|.+++..+..++. +++|||++|++.++..+
T Consensus 137 ~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 137 FAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred hhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 9999999999999999987522 245677777888888888876666553 35899999998776543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=195.64 Aligned_cols=138 Identities=22% Similarity=0.347 Sum_probs=122.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|+.+.+++.+++.++..++++++|+++||+ ||||++.++.++.+++.+++.+++ +
T Consensus 30 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------------------~ 84 (352)
T PF07690_consen 30 SPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFAS------------------------N 84 (352)
T ss_dssp TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHC------------------------C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhhh------------------------h
Confidence 678899999999999999999999999996 999999999999999977777753 4
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.+.++++|+++|++.+...|....++.|++|++ +|++.++......++|.++||.+++++.++++||+.|++.+
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 558999999999999999999999999998752 33568999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 009538 162 FMMFLSCAM 170 (532)
Q Consensus 162 ~~~~l~~~~ 170 (532)
+..++..++
T Consensus 159 ~~~~~~~il 167 (352)
T PF07690_consen 159 ILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhhh
Confidence 887777654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=199.17 Aligned_cols=149 Identities=15% Similarity=0.050 Sum_probs=117.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++.+.+.++..++++++|+++||+ |||++++++.++++++.++++++.... .
T Consensus 60 ~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~--------------------~ 118 (452)
T PRK11273 60 FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------------------S 118 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc--------------------c
Confidence 4678899999999999999999999999996 999999999999999999888863111 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHH-HHHHHhhhhccccccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~g~i~~~~gw~~~F~v 159 (532)
++..+++.|+++|++.|...|.....+.|++|+ +.|++.+++++.+.++|. +.+|+++..+....+||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 577889999999999999989888889998874 223568899889999886 4566554444344699999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 009538 160 PAFMMFLSCAMFFLGSR 176 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~ 176 (532)
.++..++..++.+...|
T Consensus 193 ~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 193 PAFAAILVALFAFAMMR 209 (452)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 87765554443333333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-20 Score=191.58 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=112.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.|.+.+.++.+++|+++||+ ||||+++++..++++++++++++. +
T Consensus 36 s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~~~~~------------------------~ 90 (393)
T PRK11195 36 PDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLMLFGI------------------------H 90 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHHHHHH------------------------H
Confidence 456789999999999999999999999996 999999999999999999887764 2
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.++.|+++|++.|...|+..+++.|++|+ ++|+++.++.....++|.++||.++|++.+. .|+..|.+.+
T Consensus 91 ---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~------~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~ 160 (393)
T PRK11195 91 ---PLLAYGLVGIGAAAYSPAKYGILTELLPG------EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA 160 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 37899999999999999999999999874 2346789999999999999999999999874 4777777766
Q ss_pred HHHHHH
Q 009538 162 FMMFLS 167 (532)
Q Consensus 162 ~~~~l~ 167 (532)
...++.
T Consensus 161 ~~~~~~ 166 (393)
T PRK11195 161 LIYLLA 166 (393)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=194.21 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=118.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.+.+.+++++.|+++||+ |||++++++.++..++.++.++++
T Consensus 40 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~~~~~~~~~~~------------------------ 94 (395)
T PRK10054 40 LSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFASGFIAIPLVN------------------------ 94 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHHHHHHHHh------------------------
Confidence 3678899999999999999999999999995 999999999999999999988875
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.+++.|.+.|.+.+...|+..++..|.+++ ++|++.+++.+...++|.++||.+++++.. .+|+++|++.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS------TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 466788889999988888888899999998764 234568999999999999999999999875 7999999988
Q ss_pred HHHHHHHHHHH
Q 009538 161 AFMMFLSCAMF 171 (532)
Q Consensus 161 ~~~~~l~~~~~ 171 (532)
++..++..+..
T Consensus 168 ~~~~~i~~i~~ 178 (395)
T PRK10054 168 AICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHH
Confidence 77666654443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=194.20 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=119.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++++++
T Consensus 44 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 98 (405)
T TIGR00891 44 LTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFAP------------------------ 98 (405)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678899999999999999999999999996 999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc--chhhhH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS--WAWGLG 158 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g--w~~~F~ 158 (532)
++..++++|+++|++.+...+...+++.|++|++ +|+++++++.....+|..+++.+++.+.+..+ ||+.|+
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 5778999999999999999999999999998752 23457999999999999999999999887666 999999
Q ss_pred HHHHHHHHH
Q 009538 159 IPAFMMFLS 167 (532)
Q Consensus 159 v~~~~~~l~ 167 (532)
+.++..++.
T Consensus 173 ~~~~~~~~~ 181 (405)
T TIGR00891 173 ISILPIIFA 181 (405)
T ss_pred HHHHHHHHH
Confidence 866554444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=198.70 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=110.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++++++.+++++++
T Consensus 68 ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~------------------------ 122 (476)
T PLN00028 68 LTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSLVS------------------------ 122 (476)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3567889999999999999999999999996 999999999999999999888875
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc---------cc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---------DV 151 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~---------~~ 151 (532)
++..+++.|+++|++.+...+ ...+++|++|++ .|++++++.....++|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 466788999999999987654 556789998742 23457888777777787777666554421 25
Q ss_pred cchhhhHHHHHHHHHHHHHHHh
Q 009538 152 SWAWGLGIPAFMMFLSCAMFFL 173 (532)
Q Consensus 152 gw~~~F~v~~~~~~l~~~~~~~ 173 (532)
|||+.|++.+++.++..+..+.
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988766555444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=193.04 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=122.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+++.++..++.+++|+++||+ |||+++.++..+.+++.+++++++
T Consensus 27 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 81 (379)
T TIGR00881 27 LSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------------------ 81 (379)
T ss_pred CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------------------
Confidence 3678899999999999999999999999996 999999999999999999999885
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHH-HhhhhccccccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL-TVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~-~~~g~i~~~~gw~~~F~v 159 (532)
+++.+++.|+++|++.+...|...+++.|++|++ +|++.++++....++|..++| .+++.+.+..+||+.|++
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 5778999999999999999999999999998752 234578889999999999999 577778788999999998
Q ss_pred HHHHHHHHHHHHHh
Q 009538 160 PAFMMFLSCAMFFL 173 (532)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (532)
.++..++..++.+.
T Consensus 156 ~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 156 PGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHHHHHHHHhe
Confidence 77765554444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=184.03 Aligned_cols=142 Identities=14% Similarity=0.151 Sum_probs=124.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.+++.+++.+++
T Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------------------------ 77 (377)
T PRK11102 23 VSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------------------------ 77 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------------------------
Confidence 3678899999999999999999999999996 999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.+++.|+++|++.+...+...+++.|++++ ++|++.+++.+...++|..++|.+++++.++.+||+.|++.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 577899999999999999999999999998864 23456899999999999999999999999989999999987
Q ss_pred HHHHHHHHHHHHh
Q 009538 161 AFMMFLSCAMFFL 173 (532)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (532)
++..++..+..+.
T Consensus 152 ~~~~~~~~~~~~~ 164 (377)
T PRK11102 152 ALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=187.44 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=121.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++. +
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 104 (398)
T TIGR00895 50 DPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALAT------------------------N 104 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHcc------------------------c
Confidence 567889999999999999999999999996 999999999999999999888774 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.+++.|++.|++.+...+...+++.|++|+ +.|++.++++....++|..+|+.+++++.+..||++.|++.+
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~ 178 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPK------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG 178 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCH------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence 67899999999999999999999999999864 233457999999999999999999999999999999999886
Q ss_pred HHHHHHHHHHHh
Q 009538 162 FMMFLSCAMFFL 173 (532)
Q Consensus 162 ~~~~l~~~~~~~ 173 (532)
+..++..++.+.
T Consensus 179 ~~~~~~~~~~~~ 190 (398)
T TIGR00895 179 IAPLLLLLLLMR 190 (398)
T ss_pred hHHHHHHHHHHH
Confidence 544444333333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=186.40 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=116.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..+.+++.+.+.+++.++++++|+++||+ ||||++..+.+++.++.+++++++
T Consensus 39 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~~~------------------------ 93 (394)
T PRK03699 39 LPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMFSH------------------------ 93 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcc------------------------
Confidence 3678889999999999999999999999996 999999999999999999999874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-ccccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-~~~gw~~~F~v 159 (532)
++..+++.|+++|++.|...+....++.|++|++ +|+..++..+...++|..++|.+.+++. +..|||+.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5678999999999999999999999999998641 2245677777788899999999888764 46899999998
Q ss_pred HHHHHHHHHH
Q 009538 160 PAFMMFLSCA 169 (532)
Q Consensus 160 ~~~~~~l~~~ 169 (532)
.++..++..+
T Consensus 168 ~~~~~~~~~~ 177 (394)
T PRK03699 168 IGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHH
Confidence 7765554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-20 Score=192.49 Aligned_cols=150 Identities=14% Similarity=0.041 Sum_probs=121.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+++.+++.+++.++..+++++.|+++||+ |||+.+.++.++++++.+++++.++.. .
T Consensus 58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 116 (438)
T TIGR00712 58 FSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT--------------------S 116 (438)
T ss_pred CCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc--------------------c
Confidence 4678899999999999999999999999996 999999999999999998877653211 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhh-ccccccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY-VQSDVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~-i~~~~gw~~~F~v 159 (532)
++..+++.|++.|++.|...+....++.|++|+++ |++++++++...++|..+++.+.+. +..+.+||+.|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56778899999999999999989999999987532 3458999999999999999887665 4445799999999
Q ss_pred HHHHHHHHHHHHHhhcce
Q 009538 160 PAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~ 177 (532)
.++..++..+..+...|+
T Consensus 191 ~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 191 PAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 887666554444433333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=193.64 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=118.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.++..++.+++|+++||+ |||++++++.++++++.++++++.
T Consensus 52 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 106 (496)
T PRK03893 52 LTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFAP------------------------ 106 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh------------------------
Confidence 3577889999999999999999999999996 999999999999999999999874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|++.+...+....++.|.+++ +.|++.++.+....++|..++|.+++++.++++||+.|++.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK------HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 577899999999999999999999999999874 23456789999999999999999999999999999999875
Q ss_pred HHH
Q 009538 161 AFM 163 (532)
Q Consensus 161 ~~~ 163 (532)
++.
T Consensus 181 ~~~ 183 (496)
T PRK03893 181 ILP 183 (496)
T ss_pred HHH
Confidence 543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=185.22 Aligned_cols=140 Identities=15% Similarity=0.099 Sum_probs=119.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+.+++.+++.++..++++++|+++||+ |||+++..+.++..++.+++++++
T Consensus 38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------ 92 (401)
T PRK11043 38 TSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE------------------------ 92 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678899999999999999999999999996 999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.+++.|+++|+|.+...+...+++.|+++++ ++.+.++......++|..++|.+++++.++.|||+.|++.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 5778999999999999888888888999988742 2234677777788999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 009538 161 AFMMFLSCAMF 171 (532)
Q Consensus 161 ~~~~~l~~~~~ 171 (532)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 77655554433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=188.38 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc
Q 009538 18 NFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG 97 (532)
Q Consensus 18 ~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 97 (532)
.+++++.|+++||+ ||||+++.+..++++++++++++++...+.. .....++++|+++|++.|
T Consensus 70 ~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~l~~~R~l~G~~~g 132 (434)
T PRK15075 70 PLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVPGYATIGL----------------AAPLLVLLGRLLQGFSAG 132 (434)
T ss_pred hhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHH----------------HHHHHHHHHHHHhhcccc
Confidence 36789999999996 9999999999999999999999854221000 001257899999999999
Q ss_pred ccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--------ccccchhhhHHHHHH
Q 009538 98 GIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFM 163 (532)
Q Consensus 98 ~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--------~~~gw~~~F~v~~~~ 163 (532)
...|....+++|++|+++ |++.++++....++|..+|+.+++.+. +.+|||++|++.++.
T Consensus 133 ~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 133 VELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred ccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence 999999999999987532 345788888888888888777777652 468999999986543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=184.10 Aligned_cols=126 Identities=11% Similarity=0.048 Sum_probs=108.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+..+.+++.+++++++
T Consensus 38 ~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~~~~------------------------ 92 (381)
T PRK03633 38 LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLGLMV------------------------ 92 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 3678999999999999999999999999996 999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
+++.++++|+++|++.++..|...+.+.|..+++ +|++.++.++...++|..+||.+++++.+...|+..+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 5778999999999999999888888888876542 3456899999999999999999999987754444333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-19 Score=182.92 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=118.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.++..+++++.|+++||+ ||||++.++..+..++.+++.+++
T Consensus 40 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~------------------------ 94 (394)
T PRK11652 40 VREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVALFAH------------------------ 94 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc------------------------
Confidence 3678889999999999999999999999996 999999999999999999988874
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
++..+++.|+++|++.+...+....+..|.+++ ++++++.+.+..+..+|..+||.+++++.++.|||+.|++.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG------TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 577899999999999998888888888887753 22345788888899999999999999999889999999997
Q ss_pred HHHHHHHHH
Q 009538 161 AFMMFLSCA 169 (532)
Q Consensus 161 ~~~~~l~~~ 169 (532)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765554433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=180.91 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=129.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|.+|.+.+-+.|++++.++-.+.|.++||. +.|+.+.+++++.++-.++.++++
T Consensus 61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gfs~------------------------ 115 (448)
T COG2271 61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGFSP------------------------ 115 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhhhh------------------------
Confidence 4678999999999999999999999999996 999999999999999999999996
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhh--hhccccccchhhhH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI--VYVQSDVSWAWGLG 158 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~--g~i~~~~gw~~~F~ 158 (532)
++..+.+.-++.|+..|.-.|.+...++.|||. ++|++..++|..+-|+|..+.|.+. +++..+.+||..|+
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr------~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR------KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc------cccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 477899999999999999999999999999984 3346689999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhcce
Q 009538 159 IPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 159 v~~~~~~l~~~~~~~~~~~ 177 (532)
+++++.++..+..+...++
T Consensus 190 ~pgiiaiival~~~~~~rd 208 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9998765555544444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=180.99 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=121.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|+.+.+++.+.+.++..+++++.|+++||+ |||+.++.+.+++.++.+++.+++ +
T Consensus 36 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~~------------------------~ 90 (392)
T PRK10473 36 SEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAE------------------------T 90 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHhC------------------------c
Confidence 567889999999999999999999999996 999999999999999999988874 4
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
+..++++|+++|++.+...+...+++.|.+++ ++|++.++..+...++|..++|.+++++.+..|||+.|++.+
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 66789999999999999999999999998864 234568899999999999999999999888899999999987
Q ss_pred HHHHHHHHHH
Q 009538 162 FMMFLSCAMF 171 (532)
Q Consensus 162 ~~~~l~~~~~ 171 (532)
+..++..+..
T Consensus 165 ~~~~i~~~~~ 174 (392)
T PRK10473 165 AMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHH
Confidence 7655554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=179.67 Aligned_cols=136 Identities=8% Similarity=0.126 Sum_probs=110.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.|.++..++++++|+++||+ ||||++..+..+++++.+++...... ..
T Consensus 45 ~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~~~--------------------~~ 103 (402)
T TIGR00897 45 LSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWCVGHAAFIVFGLG--------------------HA 103 (402)
T ss_pred CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhcc--------------------Cc
Confidence 3678899999999999999999999999996 99999999999999998766432100 02
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHH-HHHHHhhhhccccccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~g~i~~~~gw~~~F~v 159 (532)
++..+++.|+++|+|.+...+.....+.+.+++ ++|+++.+.++...++|. .+||.+++++.+.+||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ------DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 567788999999999988888788888888764 234568999999999997 6899999999888997766665
Q ss_pred HHHH
Q 009538 160 PAFM 163 (532)
Q Consensus 160 ~~~~ 163 (532)
....
T Consensus 178 ~~~~ 181 (402)
T TIGR00897 178 ALAF 181 (402)
T ss_pred HHHH
Confidence 4443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=189.19 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=131.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++...+.+.++|.+...++.|+.|+|+||| -||+++.+|..+|++..++++++.
T Consensus 65 i~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~fs~------------------------ 119 (493)
T KOG1330|consen 65 ISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASGFSN------------------------ 119 (493)
T ss_pred CCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHHHHH------------------------
Confidence 4678889999999999999999999999997 999999999999999999999984
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v 159 (532)
+++.+.+.|.+.|+|++.+.|+++++++|.||. .+|++.++++|+.+++|..+|.+.+..+....+ |||.|++
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~ 193 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG 193 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcc------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence 699999999999999999999999999999975 344668999999999999999999999988766 9999999
Q ss_pred HHHHHHHHHHHHHhhcce
Q 009538 160 PAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~ 177 (532)
.+++.++..++.++..++
T Consensus 194 ~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 194 SAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ehHHHHHHHHHHHhhccC
Confidence 998877776665555444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=180.41 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=100.4
Q ss_pred chhhhHHHHHHHHH-HHHHHHhHHHHHhhccccchHHH-HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 2 KSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTL-GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 2 ~~~~~~~i~~~~~~-~~~~~~l~~G~laD~~~Grr~~l-~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
|+++.+++++.+.+ +..++++++|+ +||+ ||||.+ +.+.++.+++..+.++++
T Consensus 49 s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~----------------------- 103 (393)
T PRK15011 49 RPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLFAWNR----------------------- 103 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHHHHhh-----------------------
Confidence 57788888877655 45556666666 9996 999875 455666667777777764
Q ss_pred hhHHHHHHH-HHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhH
Q 009538 80 WQLAFLFTG-LGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG 158 (532)
Q Consensus 80 ~~~~~l~~~-r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~ 158 (532)
+++.+++. +++.|++ +...|....+..|+.++ ++| ..+...+....+.++|.++||.+++++.+++|||+.|+
T Consensus 104 -~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 104 -NYFVLLFVGVFLSSFG-STANPQMFALAREHADK---TGR-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred -HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhh---ccc-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 45555544 4555554 46678888888886442 221 22234467788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcce
Q 009538 159 IPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 159 v~~~~~~l~~~~~~~~~~~ 177 (532)
+.++..++..+..+...|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 178 SAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHHHHHHHHHHHHHhhcCc
Confidence 9887666555544443443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=183.19 Aligned_cols=327 Identities=12% Similarity=0.063 Sum_probs=213.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+...+.+..+-.+...+..+++|.++||+ .|||+++.+-++..+..++.++..... ..+.
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~-------------------~~~~ 103 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG-------------------LLSP 103 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC-------------------cCCH
Confidence 45567777777888889999999999996 999999999999888777666543211 1357
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
+.+++.-++.|++.+...|+-++++.|..|+ +++..+.++.....|+.-++||.++|.+...+|-.+.|.++++
T Consensus 104 ~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~------~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inal 177 (524)
T PF05977_consen 104 WLLLILTFLLGIGSAFFNPAWQAIIPELVPK------EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINAL 177 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999874 2345578999999999999999999999988999999999998
Q ss_pred HHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhccc
Q 009538 163 MMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIM 242 (532)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (532)
..++....++..+++. +++..+.+++.+-+....+ +...
T Consensus 178 sfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r----------------------------------yv~~---- 216 (524)
T PF05977_consen 178 SFLISILALLRWKPPP---PPSSLPRERFFSALREGLR----------------------------------YVRS---- 216 (524)
T ss_pred HHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH----------------------------------HHhc----
Confidence 7666554444333321 1111111111111111000 0000
Q ss_pred CCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhhhh
Q 009538 243 TPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIF 322 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
-+..+.++ +..+++..+.......+ +.+.....+.+. ...+.+...
T Consensus 217 -----------------------~~~l~~~l--~~~~~~~l~~~a~~aLl-Pl~a~~~l~~~a--------~~yGll~a~ 262 (524)
T PF05977_consen 217 -----------------------SPPLRSVL--LRSFLFNLFASAVWALL-PLFARDVLGGGA--------SGYGLLLAA 262 (524)
T ss_pred -----------------------chHHHHHH--HHHHHHHHhhhHHHHhh-hHHHHHHhCCcH--------HHHHHHHHH
Confidence 00111111 11111111111111111 111111111110 112344455
Q ss_pred hhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchH
Q 009538 323 SMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSG 402 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (532)
..++.+++..+..++ .+| .+..+.+..+.++.+++++.+++. .+.
T Consensus 263 ~gvGai~Gal~~~~l--------~~~---~~~~~lv~~~~~~~a~~~~~lal~------------------------~~~ 307 (524)
T PF05977_consen 263 FGVGAILGALLLPRL--------RRR---LSSRRLVLLASLLFALALLLLALS------------------------PSF 307 (524)
T ss_pred HHHHHHHHHHHHHHh--------hcc---cCcchhhHHHHHHHHHHHHHHhcc------------------------hHH
Confidence 556666665553332 222 233355666777777776666654 356
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009538 403 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 465 (532)
Q Consensus 403 ~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~ 465 (532)
|...+.+++.|++........++.+.+..|+++||++++++.+....+..+|..+.|.+.+..
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~ 370 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF 370 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777888899999998889999999999999999999999999999999999999988754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=179.57 Aligned_cols=128 Identities=13% Similarity=0.225 Sum_probs=101.1
Q ss_pred HHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc
Q 009538 18 NFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG 97 (532)
Q Consensus 18 ~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 97 (532)
.+++++.|+++||+ ||||++..+.+++.++.++++++++.++.. ......++++|+++|++.+
T Consensus 49 ~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~r~l~G~~~~ 111 (394)
T TIGR00883 49 PLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG----------------IWAPILLLLARLIQGFSLG 111 (394)
T ss_pred hhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH----------------HHHHHHHHHHHHHHHhhcc
Confidence 36889999999996 999999999999999999999986422100 0112468999999999999
Q ss_pred ccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--------ccccchhhhHHHHHHHHHHH
Q 009538 98 GIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSWAWGLGIPAFMMFLSC 168 (532)
Q Consensus 98 ~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--------~~~gw~~~F~v~~~~~~l~~ 168 (532)
...+..+.++.|+++++ +|++..+..+.+..+|.++++.+++.+. +.++||+.|++.++..++..
T Consensus 112 ~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 112 GEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred ccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 99999999999998742 2345788888899999999988776553 35799999998776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=204.78 Aligned_cols=119 Identities=9% Similarity=0.081 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
...+++.++|.++..++++++|+++||+ |||++++++.++.+++.+++.++... .+++
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 104 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVLAYYL---------------------GWFW 104 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------------ccHH
Confidence 3468889999999999999999999996 99999999998877777766554311 2578
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD 150 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~ 150 (532)
.++++|+++|++.|...|+..+++.|+++++ +|+++++++..+.++|.++|+.+++++.+.
T Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999998752 234589999999999999999999998765
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=182.87 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=99.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.|.+++.+++++.|++.||+ ||||++..+..+++++.+++..+..- +
T Consensus 58 ~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~a---------------------~ 115 (438)
T PRK10133 58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI---------------------M 115 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhc---------------------C
Confidence 4678999999999999999999999999996 99999999999999999887432110 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 147 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i 147 (532)
++..++++|+++|+|.|...+..+.++.|+. +++.+ ...++.++....+|..+||.+++.+
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~-----~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSG-----HFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999864 32211 2247888888899999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=205.36 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHH--HH-HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF--AS-VASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~--~~-~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
..+++.++|.+.+.++++++|+++||+ |||+++.. .. ++..+..+++..+. +
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~------------------------s 107 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN------------------------S 107 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------h
Confidence 457777889999999999999999996 99998643 22 22222222222222 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|+++|++.+.+.|+..+++.|+++++ ++++++++..++.++|.++||.++|++....+|++.|++.+
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 788999999999999999999999999999853 23458999999999999999999999999999999995554
Q ss_pred HHHHHHHH
Q 009538 162 FMMFLSCA 169 (532)
Q Consensus 162 ~~~~l~~~ 169 (532)
+..+++++
T Consensus 182 ~~~~~~~~ 189 (1140)
T PRK06814 182 GIAVLGWL 189 (1140)
T ss_pred HHHHHHHH
Confidence 44444333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-24 Score=226.83 Aligned_cols=398 Identities=16% Similarity=0.150 Sum_probs=229.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
.+.+++.+++.++..++++++|+++||+ |||+++.++..+..+|+++.++++.. .++.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~ 103 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFW 103 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------cccc
Confidence 4568899999999999999999999996 99999999999999999999998521 1567
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc---cccchhhhHHH
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---DVSWAWGLGIP 160 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~---~~gw~~~F~v~ 160 (532)
.++++|+++|+|.|...+..+.|+.|..|++. |+...++.+....+|..++..++-.+.. ..+||+.+.+.
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999876422 2447788888889999888776554433 34599999988
Q ss_pred HHHHHHHHH--HHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhh
Q 009538 161 AFMMFLSCA--MFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDK 238 (532)
Q Consensus 161 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (532)
.+..++..+ .++..+|++...+.+.++..+..+. . ++.+.++++.. +..
T Consensus 178 ~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~----~--~~~~~~~~~~~---~~~-------------------- 228 (451)
T PF00083_consen 178 AIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRK----L--RGKEIEDEEIE---EIK-------------------- 228 (451)
T ss_pred ccccccccccccccccccceeccccccccccccccc----c--ccccccccccc---ccc--------------------
Confidence 776543333 3444567776555444333222211 0 00000000000 000
Q ss_pred hcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHH-HHhcccchhhhhhhhccCcccCCccceeChh
Q 009538 239 AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY-VALVQQQTYVVFQALQSDRRVGNTHFKIPAA 317 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (532)
++.++.......|+...+... .+++++..+.+........ ....++.+.........+. . ....
T Consensus 229 -------~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~------~~~~ 293 (451)
T PF00083_consen 229 -------AEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-F------LATL 293 (451)
T ss_pred -------cccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccccccccc-c------cccc
Confidence 000000000012221111100 1223222222211111111 0111111111111110000 0 1111
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCcccccCCc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISG-IIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
.....+.++.++.. .+.+|++|| +.+..+..+++++.+..+ .... .. +.
T Consensus 294 ~~~~~~~~~~~~~~--------~~~~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~-~~-----~~--------- 343 (451)
T PF00083_consen 294 ILGLVNFLGTLLAI--------FLIDRFGRR-------KLLIIGLLLMAICSLILGIIFFL-GV-----SS--------- 343 (451)
T ss_pred cccccccccccccc--------ccccccccc-------ccccccccccccccccccccccc-cc-----cc---------
Confidence 11122222222222 246666666 455566666666655554 1100 00 00
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
....+.+.++...+..........+..+.+..|.+|.+.|+++.++....+++++.+++.+.+.+.+..+
T Consensus 344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~---------- 413 (451)
T PF00083_consen 344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG---------- 413 (451)
T ss_pred ccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 0011222222222222333435566777899999999999999999999999999999888877664321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccc
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPE 519 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 519 (532)
....+..+++++++..++.+++.||+|+++.||.+++
T Consensus 414 ------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 414 ------GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ------ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 1245677778888888888888999999998877654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-18 Score=175.91 Aligned_cols=332 Identities=12% Similarity=-0.040 Sum_probs=202.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHH----HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTL----GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l----~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
+|..+.+++.+++.+...+++++.|+++||+ ||++.. ..+..++.+ +++..++
T Consensus 36 ~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~--~~~~~~~-------------------- 92 (382)
T TIGR00902 36 LGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA--AFSAGAH-------------------- 92 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH--HHHHhhh--------------------
Confidence 3678999999999999999999999999996 985433 232222222 2233332
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhh
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 156 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~ 156 (532)
+++.+++.|+++|.+.+...|...++..|+ + + ++++.++......++|.++||.+++++.+++|||+.
T Consensus 93 ----~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~ 160 (382)
T TIGR00902 93 ----NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNI 160 (382)
T ss_pred ----hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 578899999999999999999988887653 2 1 123468888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccch
Q 009538 157 LGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCL 236 (532)
Q Consensus 157 F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (532)
|++......+..+ .+...|+. +|++++.. + + . .
T Consensus 161 f~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~-----------------~-~-----------~---~----------- 193 (382)
T TIGR00902 161 LAILTAGLAFMLI-GFLIKPTI---PPKDAIPE-----------------D-E-----------S---Q----------- 193 (382)
T ss_pred HHHHHHHHHHHHH-HHHcCCCC---CCCccccc-----------------c-c-----------c---c-----------
Confidence 9886554322222 22222211 11100000 0 0 0 0
Q ss_pred hhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhh-HhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeC
Q 009538 237 DKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIP 315 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (532)
.++. ..+-.++ |++... +..++........+... +.+. +....+. ..
T Consensus 194 --------------------~~~~-~~~~l~~-~~~~~~l~~~~l~~~~~~~~~~~~-~~~l-~~~g~s~--------~~ 241 (382)
T TIGR00902 194 --------------------GDSA-FIALLKN-PMNLRFLAAVCLIQGAHAAYYGFS-AIYW-QAAGISA--------SA 241 (382)
T ss_pred --------------------cchh-HHHHHcC-hHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHCCCCH--------hH
Confidence 0000 0000111 222111 11111112222222111 1111 1111111 01
Q ss_pred hhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCC
Q 009538 316 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 395 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (532)
.+.......++.++..++.++ +.+| +++.+.+.++.++..+........
T Consensus 242 ~g~l~~~~~~~~i~~~~~~~~--------l~~r---~g~~~~l~~~~~~~~~~~~~~~~~-------------------- 290 (382)
T TIGR00902 242 TGLLWGIGVLAEIIIFAFSNK--------LFQN---CSARDLLLISAIACVGRWAIIGAI-------------------- 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHH--------HHhh---CCHHHHHHHHHHHHHHHHHHHHhH--------------------
Confidence 122233344444444444333 3343 444467788888888887766654
Q ss_pred ccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 009538 396 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWL 474 (532)
Q Consensus 396 ~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 474 (532)
.+.+.++...++.++..+...+....++.+. |++.+++++++++ +...+|..+++.+.|.+.|..
T Consensus 291 ----~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~--------- 356 (382)
T TIGR00902 291 ----EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL--------- 356 (382)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 3567777778999999999999999999988 9999999999986 567899999999999998743
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHH
Q 009538 475 PEDLNKGRLDYFYYLVAALGLLNFG 499 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~vv~~~ 499 (532)
+ ...|+..+++.+++.+
T Consensus 357 -------g-~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 357 -------G-AGTFVFMAIIAAAAFF 373 (382)
T ss_pred -------c-HHHHHHHHHHHHHHHH
Confidence 1 2456666666665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-18 Score=175.99 Aligned_cols=368 Identities=11% Similarity=0.029 Sum_probs=205.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGR-YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Gr-r~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
++..+.+++.+++.++..++++++|+++||+ || |+++.++.++.+++..++.+++
T Consensus 35 ~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~~~~----------------------- 90 (418)
T TIGR00889 35 FSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAAQVT----------------------- 90 (418)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 4678999999999999999999999999995 76 7788888888888888877764
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCC--CCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNT--ESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~--~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
++..+++.|++.|++.+...|...+...+...+.. ..+...+.+.++ .+|.++||.+++.+.....|++ |
T Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f 162 (418)
T TIGR00889 91 -TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-L 162 (418)
T ss_pred -CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-H
Confidence 46678889999999888887776665433221100 000001112333 4789999999998854334543 5
Q ss_pred HHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchh
Q 009538 158 GIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (532)
++.++..++..+. ....|+.++ +++++..+..+. .. ..
T Consensus 163 ~~~~~~~~~~~~~-~~~~~e~~~--~~~~~~~~~~~~-------~~-----------------------------~~--- 200 (418)
T TIGR00889 163 YITAGSSALLGVF-ALTLPDIPV--AKSTAKMSIKVM-------LG-----------------------------LD--- 200 (418)
T ss_pred HHHHHHHHHHHHH-HhcCCCCCC--CccccccCHHHH-------hh-----------------------------hh---
Confidence 5555544443332 222222110 000000000000 00 00
Q ss_pred hhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhH-hHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee-C
Q 009538 238 KAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVI-PIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI-P 315 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (532)
.....++ +++...+ ..++............ ..+..... .+...+ .++.. .
T Consensus 201 ------------------------~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~-~~~~~~~ 252 (418)
T TIGR00889 201 ------------------------AFILFKN-KRMAIFFFFSMLLGAPLQITNIFG-NGFLHEFG-RNPEFA-DSFVVKN 252 (418)
T ss_pred ------------------------HHHHhcC-CCeeeHHHHHHHHHhHHHHHHHhH-HHHHHHhc-cccccc-chhhhhh
Confidence 0000001 1111111 1111111111111111 11111111 000000 00000 1
Q ss_pred hhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCC
Q 009538 316 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 395 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (532)
.+.....+.+..++...+.+++ .+|+++| +.+..+.++.++++.......
T Consensus 253 ~g~~~~~~~i~~i~~~~~~g~l----~dr~g~r-------~~l~~~~~~~~v~~~l~~~~~------------------- 302 (418)
T TIGR00889 253 ASIWMSLSQFSEIFFILTIPFF----LKRFGIK-------KVMLLSLVAWALRFGFFAYGD------------------- 302 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 1333344444444555554443 6665544 567777777766655554321
Q ss_pred ccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 009538 396 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWL 474 (532)
Q Consensus 396 ~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 474 (532)
....+.+.++...++.+++++...+....++.|.+|++.|++++|+.+ ....+|..+++.+.|.+.|..+....
T Consensus 303 -~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~---- 377 (418)
T TIGR00889 303 -PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT---- 377 (418)
T ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC----
Confidence 001123445566788889988888888899999999999999999997 67889999999999999875421100
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009538 475 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~ 511 (532)
.++...|...+++.+++.+..+++.++.+..
T Consensus 378 ------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 378 ------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 1356778888888787777777776655433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-18 Score=172.28 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=111.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.+..+++.+++ .++
T Consensus 32 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------------------------ 85 (355)
T TIGR00896 32 MSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------------------------ 85 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------------------------
Confidence 3678899999999999999999999999996 99999999999998888777 442
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc--cchhhhH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV--SWAWGLG 158 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~--gw~~~F~ 158 (532)
+...+++.|+++|+|.+...+..+.++.|++++ +++++++.++...++|..+++.+++.+.++. +||+.|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 467889999999999999888888888887642 2345899999999999999999988887654 3999988
Q ss_pred HHHHHHH
Q 009538 159 IPAFMMF 165 (532)
Q Consensus 159 v~~~~~~ 165 (532)
+.++..+
T Consensus 159 ~~~~~~~ 165 (355)
T TIGR00896 159 WWALPAL 165 (355)
T ss_pred HHHHHHH
Confidence 7655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-17 Score=176.03 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=102.5
Q ss_pred HHHhHHHHHhhccc-----cchHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 009538 19 FATLLGAFLSDTYF-----GRYKT-LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLM 92 (532)
Q Consensus 19 ~~~l~~G~laD~~~-----Grr~~-l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 92 (532)
++.+++|+++|| + ||||. ++++.+..+++.+++++.+. ..+++.+.+.++++
T Consensus 60 ~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~ 117 (491)
T PRK11010 60 VFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVI 117 (491)
T ss_pred HHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHH
Confidence 689999999999 7 99986 66777777778788877531 13678899999999
Q ss_pred HHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-cccchhhhHHHHHHHHHHHHHH
Q 009538 93 VIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAFMMFLSCAMF 171 (532)
Q Consensus 93 G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~-~~gw~~~F~v~~~~~~l~~~~~ 171 (532)
+++.+...+...++..|++|++ +|++..++...+.++|.++++.+++++.+ .+|||++|++.++..++..+..
T Consensus 118 ~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 118 AFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998742 23557888999999999999999999988 5799999999887665554433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-18 Score=176.79 Aligned_cols=356 Identities=10% Similarity=-0.009 Sum_probs=194.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL---TAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~---a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+|..+.+.+.+++.++..++++++|+++||+ ||||+++++..+..++...... ++....
T Consensus 43 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 104 (420)
T PRK09528 43 LSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVLFGPFFIYVFAPLLQY----------------- 104 (420)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 3678899999999999999999999999996 9999999877776655442221 110000
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
..+...++++++.|.+.....+....+..+ ++ ++++..++......++|..+||.+++++.+ .+|+++|
T Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f 173 (420)
T PRK09528 105 --NILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-------RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF 173 (420)
T ss_pred --HHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-------hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence 011112333444443333333333332211 11 122446777778889999999999999875 6899999
Q ss_pred HHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchh
Q 009538 158 GIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (532)
++.++..++..+..+..+++.+++ ++.++ .++ ++ + ++..+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------~~~-----------~~---~-----~~~~~~~ 215 (420)
T PRK09528 174 WLGSGSALILLVLLFFAKPDAPST-AKVAN------------------ALG-----------AN---A-----SAVSLKD 215 (420)
T ss_pred HHHHHHHHHHHHHHhcccccccch-hhhcc------------------chh-----------cc---c-----ccccHHH
Confidence 988776665555444333321110 00000 000 00 0 0000000
Q ss_pred hhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHH-HHHHHHhcccchhhhhhhhccCcccCCccceeCh
Q 009538 238 KAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASA-IVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPA 316 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (532)
.. ...+ .+.+.......... ..+.....+.+.+...... +...+ . ...
T Consensus 216 ~~------------------------~~l~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~-~~~ 264 (420)
T PRK09528 216 AL------------------------ALLK-LPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFA--TPEQG---T-RVF 264 (420)
T ss_pred HH------------------------HHcc-CCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCcc---h-HHH
Confidence 00 0000 11111111111111 1111121122222211111 11111 0 011
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+.....+.+...++.++.+++ .+|+++| +.+..+..+.+++.+..+..
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~~~~~~~l~~~~~~l~~~~--------------------- 312 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFI----INRIGAK-------NALLLAGTIMAVRIIGSGFA--------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCcc-------hhhHHHHHHHHHHHHHHHhc---------------------
Confidence 233333444444555554443 6666655 45666666666666655543
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 475 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 475 (532)
.+.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|+.+++.+.|++.|..
T Consensus 313 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---------- 379 (420)
T PRK09528 313 ---TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---------- 379 (420)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 2455666667777888777777778899999999999987765 67778899999999999998753
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009538 476 EDLNKGRLDYFYYLVAALGLLNFGFFLLCA 505 (532)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~ 505 (532)
++...|...+++.++..+..+...
T Consensus 380 ------G~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 380 ------GFQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHh
Confidence 245577777777666655554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=171.08 Aligned_cols=147 Identities=11% Similarity=-0.015 Sum_probs=112.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..|.+++.+++.+++.++.++.|++.||+ |.|+++.++.++.++.+++.+++..-+ ..
T Consensus 67 ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~~-------------------~~ 126 (462)
T PRK15034 67 FTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQNP-------------------NT 126 (462)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHccc-------------------CC
Confidence 4678999999999999999999999999996 999999999999999999999862000 02
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-----c------
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-----S------ 149 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-----~------ 149 (532)
++..+++.|++.|++ |...+.....++++||+ ++++++++++....|+|..+++.+.+.+. .
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~------~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~ 199 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPK------AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNG 199 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH------hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 688999999999998 66778899999999974 23356888887777778776666554422 1
Q ss_pred -------cccchhhhHHHHHHHHHHHHHHHhh
Q 009538 150 -------DVSWAWGLGIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 150 -------~~gw~~~F~v~~~~~~l~~~~~~~~ 174 (532)
..+||.++++-.++.++..+..++.
T Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 200 VPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3447777777666555554444443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=176.85 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=122.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+........++|.+|..+++++.|+++|++ |||++++.++.+++++.++.+++. |
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~------------------------~ 170 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP------------------------N 170 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC------------------------c
Confidence 345678889999999999999999999995 999999999999999999999995 6
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
+..+++.|+++|++.+....++..+++|+++++ .|+.+.++ ......|..+++.+++++.. +|||.+++..
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~ 241 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS 241 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 889999999999999999999999999998863 23446777 77888888889899999877 9999999977
Q ss_pred HHHHHHHHHHHh--hcceeeecCC
Q 009538 162 FMMFLSCAMFFL--GSRLYAKVKP 183 (532)
Q Consensus 162 ~~~~l~~~~~~~--~~~~~~~~~~ 183 (532)
+..++.++.+++ ..|++...+.
T Consensus 242 ~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 242 IPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred HHHHHHHHHHHccCcChHHHHHcC
Confidence 765555444222 3445544333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-17 Score=167.83 Aligned_cols=132 Identities=13% Similarity=-0.037 Sum_probs=99.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccch----HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRY----KTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr----~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
.|..+.+++.+++.+...++++++|+++||+ ||| +.+.++..+. ....+..+
T Consensus 36 ~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~~~~--------------------- 91 (382)
T PRK11128 36 YTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFWFGA--------------------- 91 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHHHhc---------------------
Confidence 3678899999999999999999999999996 994 3333222221 11112222
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhh
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 156 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~ 156 (532)
++++.+++.|+++|++.+...|...++..|+ .+ ++ ++.++......++|.++||.+++++.+++|||..
T Consensus 92 ---~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~--~~-----~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~ 160 (382)
T PRK11128 92 ---HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK--QI-----GLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAI 160 (382)
T ss_pred ---ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh--hc-----cCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 2678889999999999999999888887775 21 12 2357777778899999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 009538 157 LGIPAFMMFLS 167 (532)
Q Consensus 157 F~v~~~~~~l~ 167 (532)
|++.++..++.
T Consensus 161 f~~~~~~~~~~ 171 (382)
T PRK11128 161 LWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHH
Confidence 99877644433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=171.36 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=116.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.+++.+++++.|++.||+ |||+++.++..+++++.+++..++.. +
T Consensus 35 ~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~~---------------------~ 92 (410)
T TIGR00885 35 LTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAEI---------------------M 92 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHhh---------------------c
Confidence 3678899999999999999999999999996 99999999999999999887665321 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-----------
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------- 149 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~----------- 149 (532)
+++.++++|++.|+|.|...+..++++.+..|+++ +++..+..+...++|..+||.+++.+..
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 68889999999999999999999999999865432 2345888889999999999999887742
Q ss_pred ---------------cccchhhhHHHHHHHHHHH
Q 009538 150 ---------------DVSWAWGLGIPAFMMFLSC 168 (532)
Q Consensus 150 ---------------~~gw~~~F~v~~~~~~l~~ 168 (532)
..+||++|++.+++.++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1469999988776544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=173.34 Aligned_cols=331 Identities=12% Similarity=0.108 Sum_probs=197.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhcc---ccchH-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYK-TLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~---~Grr~-~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
+++.+++++.++..+...+..|+.|+++||. +|||| .++++...++++.+++..+++.++
T Consensus 32 ~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~---------------- 95 (437)
T TIGR00792 32 LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSA---------------- 95 (437)
T ss_pred CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCc----------------
Confidence 3678889999999999999999999999972 38855 577788888888888877542111
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-------c
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-------S 149 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-------~ 149 (532)
...+..+++.+++.+++.++..+...++..|..++. ++|++..++.....++|..+++.+.+.+. +
T Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~-----~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 168 (437)
T TIGR00792 96 --TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP-----RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD 168 (437)
T ss_pred --chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 124667888899999999988877888888876432 23345777777888888777766544433 3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCC
Q 009538 150 DVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 229 (532)
Q Consensus 150 ~~gw~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (532)
..+||+.|.+.+++.++..+..+...++.++++++.++ +
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-------------------------------------~---- 207 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-------------------------------------K---- 207 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-------------------------------------c----
Confidence 56899999888776665554443333321100000000 0
Q ss_pred CCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhH-HHHHHHHHHHhcccchhhhhhhhccCcccC
Q 009538 230 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPI-WASAIVYYVALVQQQTYVVFQALQSDRRVG 308 (532)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (532)
+.+..+ ..+...+ .|.+...+.. ++....+. .......++... ..+
T Consensus 208 --~~~~~~-----------------------~~~~l~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~ 254 (437)
T TIGR00792 208 --KLSLKQ-----------------------IFKALFK-NDQLLILCLAYLFYNLAFN-IKNGVQVYYFTY------VLG 254 (437)
T ss_pred --CCCHHH-----------------------HHHHHhC-CHHHHHHHHHHHHHHHHHH-HHcchhheeEee------ecC
Confidence 000000 0000001 1111111111 11111111 111111111100 011
Q ss_pred CccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 009538 309 NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPV 388 (532)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (532)
.......+.....++.+++.++..++ .+|+++| +.+..+.++..++++.....
T Consensus 255 ---~~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g~~-------~~~~~~~~~~~~~~~~~~~~------------- 307 (437)
T TIGR00792 255 ---DPELFSYMGSIAIVAGLIGVLLFPRL----VKKFGRK-------ILFAGGILLMVLGYLIFFFA------------- 307 (437)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHc-------------
Confidence 00011223334455556666664443 5665544 55667777766666554432
Q ss_pred cccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009538 389 GLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMV 461 (532)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~ig~~l~~~~~~~~ 461 (532)
+.+.+..++..++.+++.+...+..+++..|..| ++.+|.+.|++++...+|..+++.+.+.+
T Consensus 308 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 308 ----------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134445556677788888888888888888765 56789999999999999999999999999
Q ss_pred cccc
Q 009538 462 HRFT 465 (532)
Q Consensus 462 ~~~~ 465 (532)
.+..
T Consensus 378 l~~~ 381 (437)
T TIGR00792 378 LGII 381 (437)
T ss_pred HHHc
Confidence 8765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=167.94 Aligned_cols=413 Identities=15% Similarity=0.062 Sum_probs=222.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+...+.+.++=.+|..++|++.|+++|++ |||+++...++++++++++++++-. +.+-..-.
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~-----------------~~~~~~~m 144 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG-----------------TTSPLGVM 144 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC-----------------CCCCcchh
Confidence 34456677777888999999999999995 9999999999999999998877632 22222347
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-----------c
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-----------V 151 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-----------~ 151 (532)
.++++.|+++|+|.|+-+|+.-+..+|. +..+.|+ ...+.+++...+++..|.+++.++.+..... .
T Consensus 145 ~~L~~~R~~LGiGIGGDYPlSAtI~SE~-an~~~RG-a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~ 222 (538)
T KOG0252|consen 145 MTLCFFRFLLGIGIGGDYPLSATIMSES-ANKKTRG-AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDG 222 (538)
T ss_pred hHHHHHHHHhhccccCCCcchHHHhhhh-hhhcccc-ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHH
Confidence 8899999999999999999999988885 3333233 2334556666666666666666554443221 2
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHH-HHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCC
Q 009538 152 SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV-QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 230 (532)
Q Consensus 152 gw~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (532)
=||..|.+.++..++. +++ |+.. |+.++-.... +-...+..+.. .+.+. +..+.++.
T Consensus 223 vWRl~~glg~vpa~~~---ly~---Rl~M--~Et~~Y~al~~~~~~~a~~d~~--k~~~~----~~~~~~~~-------- 280 (538)
T KOG0252|consen 223 VWRIIFGLGAVPALLV---LYF---RLKM--PETARYTALVSKKLKQAAGDMK--KVLSV----DIEAESTA-------- 280 (538)
T ss_pred HHHHHHHHHHHHHHHH---HHh---hhcC--CcchhHHHHhhcCHhhhhhccc--ccccc----ccchhhcc--------
Confidence 3898888877653332 222 1111 1111111000 00001110000 00000 00000000
Q ss_pred CcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHh-cccchhhhhhhhccCcccCC
Q 009538 231 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL-VQQQTYVVFQALQSDRRVGN 309 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 309 (532)
+........++.++......+ .-..+ +.....|+.+ .-.++..+.|....+. +|-
T Consensus 281 ------------------~~~~~~~~~~~~~F~~~f~~~----hg~~L-lgt~~~WFllDiafy~~nL~~s~I~~~-ig~ 336 (538)
T KOG0252|consen 281 ------------------ESDVPPPSNSFGLFSRLFLRW----HGKHL-LGTAGTWFLLDIAFYGQNLFQSVIFSA-IGV 336 (538)
T ss_pred ------------------ccCCCCcccccchHHHHHHHH----HHHHH-HHHHHHHHhhhhhhhccccHHHHHHHh-hcc
Confidence 000001111111111111111 01111 1222223322 2222233333322221 110
Q ss_pred -ccceeChhh--hhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 009538 310 -THFKIPAAS--YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSR 386 (532)
Q Consensus 310 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (532)
+.-+..-.. ....+.+.......-.-++..-+.++++|| ..-+.|++++++-++..+..-+
T Consensus 337 ~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~~~~y~--------- 400 (538)
T KOG0252|consen 337 IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVIAGPYN--------- 400 (538)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHHcCCcc---------
Confidence 000000000 111222222222111223344456776666 5667888888887777665311
Q ss_pred CCcccccCCccccchHHHHHHHHHHH-HHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009538 387 PVGLEQRRGAISSLSGLWLIPQLSLI-GFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 465 (532)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~i~~~~l~-~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~ 465 (532)
...+....++.+.+. .+++-.-..+...+.+|.+|.+.||+.-|+...+.-+|+.++........+..
T Consensus 401 -----------~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~ 469 (538)
T KOG0252|consen 401 -----------QLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN 469 (538)
T ss_pred -----------cccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc
Confidence 011222223333332 33444445556677799999999999999999999999999999988876521
Q ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcccc
Q 009538 466 KGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEV 520 (532)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~ 520 (532)
.+.+ .+..++++++++++.++.++.+++ +|.++++.|+..++.
T Consensus 470 --------yp~~---~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 470 --------YPPN---IGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEE 512 (538)
T ss_pred --------CCcc---ccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChh
Confidence 2221 245678999999999998887765 599999887654443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=169.74 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=108.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.+++++++ +
T Consensus 34 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~~-----------------------~ 89 (366)
T TIGR00886 34 LSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLAV-----------------------Q 89 (366)
T ss_pred CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHh-----------------------h
Confidence 3678899999999999999999999999996 999999999999999999999874 1
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc----------c
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------D 150 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~----------~ 150 (532)
+++.++++|+++|++.+.. +....+++|++|++ +|++..+++....++|..+++.+++.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5778999999999997655 55788999998752 23457888887888888888877766553 3
Q ss_pred ccchhhhH-HHHHH
Q 009538 151 VSWAWGLG-IPAFM 163 (532)
Q Consensus 151 ~gw~~~F~-v~~~~ 163 (532)
.+|||.|+ ..++.
T Consensus 163 ~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 163 LAWGWAFVIVPAGI 176 (366)
T ss_pred ccccchhHHHHHHH
Confidence 58999994 43443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-17 Score=167.01 Aligned_cols=143 Identities=8% Similarity=-0.057 Sum_probs=105.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL---TAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~---a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+++.+.+++.+++.+...++++++|+++||+ ||||.++.+...+.++...... +....
T Consensus 35 ~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 95 (396)
T TIGR00882 35 LSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFIYVFGPLLQ------------------ 95 (396)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhhhHHH------------------
Confidence 3578899999999999999999999999996 9999999887777665443221 11000
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
...+..++++|++.|++.+...|....+..|. .+ ++ +..++......++|.++||.+++.+.+ .+|+++|
T Consensus 96 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~---~~----~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f 165 (396)
T TIGR00882 96 -SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV-SR---NS----NFEYGKARMFGCVGWALCASIAGILFS-IDPQIVF 165 (396)
T ss_pred -HHHHHHHHHHHHHHHHHhccchhhHHHHHHHh-hh---hc----ccccchhhhhcccHHHHHHHHHhhhhc-cCchHHH
Confidence 01234567789999999999899888777664 21 11 124667777889999999999998865 6999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009538 158 GIPAFMMFLSCAMFF 172 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~ 172 (532)
++.++..++..+..+
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 166 WLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998776665544433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=159.80 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=108.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccc-----cchH-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYF-----GRYK-TLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGAC 74 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~-----Grr~-~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~ 74 (532)
+|.++.+++...... .+..+++|+++|| + |||| .+.++.++.+++..++++...
T Consensus 31 ~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~----------------- 90 (402)
T PRK11902 31 LDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP----------------- 90 (402)
T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCc-----------------
Confidence 356777877665554 6899999999999 6 7876 688888888888888777631
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-ccc
Q 009538 75 PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSW 153 (532)
Q Consensus 75 ~~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-~gw 153 (532)
..+++.+++..++.++..+...|...+++.|++|++ +|+++.++...+.++|..+|+.+++++.+. +||
T Consensus 91 ----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 91 ----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 125677888888888999999999999999997642 234578888888999999999998888875 599
Q ss_pred hhhhHHHHHHHHHHHH
Q 009538 154 AWGLGIPAFMMFLSCA 169 (532)
Q Consensus 154 ~~~F~v~~~~~~l~~~ 169 (532)
|..|++.++..++..+
T Consensus 161 ~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 161 GNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999997776555444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=161.36 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=108.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhcc----ccchHHH-HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTY----FGRYKTL-GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~----~Grr~~l-~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
|.++.++.... .+...+ .+++|+++||+ +||||.+ +.+.++.++...++++.+.
T Consensus 21 s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------------------- 79 (356)
T TIGR00901 21 SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------------------- 79 (356)
T ss_pred CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-------------------
Confidence 56677777544 333333 89999999995 3899974 6677777777777766532
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc----
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---- 152 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g---- 152 (532)
..+++.+++..++.+++.+...+...+++.|++|++ +|+.+.++...+.++|.++++.+++++....|
T Consensus 80 --~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 80 --STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 125667778888889999999999999999998642 23457889999999999999999999988888
Q ss_pred ----chhhhHHHHHHHHHHHHHHH
Q 009538 153 ----WAWGLGIPAFMMFLSCAMFF 172 (532)
Q Consensus 153 ----w~~~F~v~~~~~~l~~~~~~ 172 (532)
||+.|++.++..++..+..+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 99999998887666554433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-16 Score=155.44 Aligned_cols=354 Identities=11% Similarity=0.038 Sum_probs=235.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.|.++++++=.+...+.-++-|.+.||+ |.|++..++.++..+-.+..+++.+.+
T Consensus 46 LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~~~~--------------------- 103 (417)
T COG2223 46 LSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAVTYP--------------------- 103 (417)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHccCC---------------------
Confidence 5788999999999999999999999999995 999999999999999999999996533
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc---chhhh
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGL 157 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g---w~~~F 157 (532)
+++.+++.+++.|++.|-+. ...++++.+|||++ .+.+++++. ..|+|..+...+++++....+ |+...
T Consensus 104 ~~~~ll~~gll~G~~GasFa-v~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 104 STWQLLVIGLLLGLAGASFA-VGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred chHHHHHHHHHHhcccceeh-cccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56889999999999987654 48888999998632 246899988 999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchh
Q 009538 158 GIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (532)
.+..+.+++..+..++..++.++.++..++... ..+
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~------------------------------------------ 211 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQL------------------------------------------ 211 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHH------------------------------------------
Confidence 998888888777777766554433222211110 000
Q ss_pred hhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcc-cchhhhhhhhccCcccCCccceeCh
Q 009538 238 KAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQ-QQTYVVFQALQSDRRVGNTHFKIPA 316 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (532)
+.+...|.+..+..+......-++.+.. .+.++..+..... ...
T Consensus 212 --------------------------~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~---------~~A 256 (417)
T COG2223 212 --------------------------KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSP---------VTA 256 (417)
T ss_pred --------------------------HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---------hhH
Confidence 0001011111111111111111111111 1112222211111 223
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+......++...+.-|+.+++ .||++.+ +...+.+..++++.+....... ..
T Consensus 257 g~~a~~f~~~g~l~Rp~GG~L----sDR~Gg~-------rv~~~~f~~~~~~~~~l~~~~~-----~~------------ 308 (417)
T COG2223 257 GLIAFLFPLIGALARPLGGWL----SDRIGGR-------RVTLAVFVGMALAAALLSLFLT-----GF------------ 308 (417)
T ss_pred HHHHHHHHHHHHHHHhccchh----hhhccch-------hHHHHHHHHHHHHHHHHHcccc-----cc------------
Confidence 344555555556666765555 6666554 5666666776666666655421 00
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
....+.+..+..++.+.+..++.....+-++..++|+ +.|.+.|+......+|+..-|...+...+.++
T Consensus 309 ~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg---------- 377 (417)
T COG2223 309 GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG---------- 377 (417)
T ss_pred ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc----------
Confidence 0113344444444445555555555677778888876 46899999999999999999999999887653
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
.+...|+.+..+.+++.+..+....+
T Consensus 378 -----~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 378 -----SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667888888888888877766543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-16 Score=168.18 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=125.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhccc-CCCC-------CCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK-LHPP-------DCGNQDSG 72 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~-~~~~-------~~~~~~~~ 72 (532)
+++.+.+++.+.|.++..++.++.|+++||+ ||||.+.++++++++|+++++++..+.. +... +..+.|..
T Consensus 65 lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~ 143 (633)
T TIGR00805 65 LSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSF 143 (633)
T ss_pred CCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccc
Confidence 4678899999999999999999999999996 9999999999999999999998753221 1000 00011122
Q ss_pred CCC-----------------CCC--chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHH
Q 009538 73 ACP-----------------GPT--PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 133 (532)
Q Consensus 73 ~~~-----------------~~~--~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~ 133 (532)
.|. -.+ ...+..++++|+++|+|.+...+...+++.|++|++ +++..+++++...
T Consensus 144 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~ 217 (633)
T TIGR00805 144 LCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIA 217 (633)
T ss_pred cccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHH
Confidence 332 111 124678889999999999999999999999998753 2356899999999
Q ss_pred hHHHHHHHHhhhhccccc----------------------cchhhhHHHHHHHHHHHHHHHh
Q 009538 134 TFAMMISLTVIVYVQSDV----------------------SWAWGLGIPAFMMFLSCAMFFL 173 (532)
Q Consensus 134 ~~G~~~g~~~~g~i~~~~----------------------gw~~~F~v~~~~~~l~~~~~~~ 173 (532)
.+|.++|+++++++.+.+ +||..|++.+++.++..+.++.
T Consensus 218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987532 2677788777665555444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=158.08 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=107.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+....|+.+.+.++..+..++.|+|+|.| |||..++++.++..+|+++++.+. |.
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------------------~~ 131 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------------------NM 131 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------------------cH
Confidence 45668999999999999999999999995 999999999999999999999985 57
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
..++.+-.+.|+|.|.... ....++|..|. |.| .................++.++..+..+.+|||.|++.++
T Consensus 132 ~~~iag~~l~GvgaG~~~~-~~~~isEl~p~---k~R---~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i 204 (599)
T PF06609_consen 132 NTFIAGMVLYGVGAGVQEL-AALAISELVPN---KWR---GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII 204 (599)
T ss_pred HHHHHHHHHHHHhhHHHHH-HHHHHHHhccc---chh---hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence 7899999999999888765 45568998764 222 2233333333334444566676666667899999999988
Q ss_pred HHHHHHHHHH
Q 009538 163 MMFLSCAMFF 172 (532)
Q Consensus 163 ~~~l~~~~~~ 172 (532)
...+.++..+
T Consensus 205 ~~~i~~vl~~ 214 (599)
T PF06609_consen 205 WSGIALVLIF 214 (599)
T ss_pred HHHHHHHHHH
Confidence 7666655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=150.23 Aligned_cols=114 Identities=20% Similarity=0.113 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
.-+|.+-+.|.++..+.++.+|.++|+| |||.+++.+++..++..++.+++. |+.
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~------------------------~F~ 122 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR------------------------NFA 122 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH------------------------HHH
Confidence 3468889999999999999999999997 999999999999999999999986 576
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 149 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~ 149 (532)
.+.++|++.|+.-|-..+ .-++++|.+++++ |. ..++.......+|..+||.+||++++
T Consensus 123 afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~-r~-----l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 123 AFVLARFLGGIFKGNLSV-IRAIISDVVSEKY-RP-----LGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhhhccCchHH-HHHHHHhhcChhh-cc-----ceeeeeehhhhcchhhcchhhhHHHh
Confidence 788889999999998766 8899999988633 22 36999999999999999999999987
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=149.53 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=108.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++..+++.+..+|..++.+++++.|++.+|+ |+|+.++.|+.++++|..+..=++. ..
T Consensus 45 ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~---------------------~~ 102 (422)
T COG0738 45 LTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS---------------------SK 102 (422)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh---------------------hh
Confidence 4678999999999999999999999999996 9999999999999999999865542 14
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 149 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~ 149 (532)
++..++++.++.|.|.|..+..+++|++...++++..+| ++..+....+|+.+||.+++++..
T Consensus 103 ~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r------lnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFR------LNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHH------HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999887655555 899999999999999999998765
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=153.24 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=127.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+.+.+++.+++.+.+.+..++.|.+.||+ |+|-.+++|+.++..++++.++.. ++
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~------------------------sy 159 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN------------------------SY 159 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc------------------------hh
Confidence 67889999999999999999999999996 999999999999999999999986 47
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
++++++|.+||+|.++...+..++++|.||++.+ |++.++.-..++.+|..+||.+||.+=+-.|.+.+|++-++
T Consensus 160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~ 234 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAI 234 (464)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHH
Confidence 7999999999999999999999999999986433 34589999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhh
Q 009538 163 MMFLSCAMFFLG 174 (532)
Q Consensus 163 ~~~l~~~~~~~~ 174 (532)
+.++-..+.++.
T Consensus 235 v~Lld~~L~l~v 246 (464)
T KOG3764|consen 235 VLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHhe
Confidence 777765554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=152.55 Aligned_cols=412 Identities=8% Similarity=0.012 Sum_probs=223.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhh----ccccchHHHHHH-HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSD----TYFGRYKTLGFA-SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD----~~~Grr~~l~~~-~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
+....+.+..+..+...+.+++.|+++| |+ ||||.++++ .....++.++.+++.++..+...+. ++ +
T Consensus 37 ~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~-~~------~ 108 (477)
T TIGR01301 37 PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNL-DK------K 108 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHhCchhhhhccccc-cc------c
Confidence 4567788888889999999999999999 55 999999875 5666666677777654321100000 00 0
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc--cc----
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--SD---- 150 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~--~~---- 150 (532)
........++++-.+..++....++...++++|.+|+++++. +.+.++.....++|..+|+.++++.. +.
T Consensus 109 ~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~----~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~ 184 (477)
T TIGR01301 109 TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRT----RIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT 184 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 001123455556666667888888888999999998654221 34788899999999999999988751 11
Q ss_pred ---------ccchhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcc
Q 009538 151 ---------VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKN 221 (532)
Q Consensus 151 ---------~gw~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (532)
.+.++.|++.++..++..++.....++.+...+++.+.. +.++ .+
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~~~-----------~~ 238 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EAAP-----------PS 238 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hccc-----------cc
Confidence 167889999888777776655544444221111000000 0000 00
Q ss_pred cccCCCCCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhh-hhhhhhHhHHHHHHHHHHHhcccchhhhhhh
Q 009538 222 CINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEV-KVLIRVIPIWASAIVYYVALVQQQTYVVFQA 300 (532)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (532)
+. .....++... +.+++. |.+.+++...++.-+-|+.+..+.+.+..+.
T Consensus 239 ~~-----------------------------~~~~~~~~i~-~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~ 288 (477)
T TIGR01301 239 KH-----------------------------GEEAFFGELF-GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGRE 288 (477)
T ss_pred cc-----------------------------chhhhHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 00 0000000000 011111 1122222222222333333333333332221
Q ss_pred hccCcccCCccceeC---hhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009538 301 LQSDRRVGNTHFKIP---AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIED 377 (532)
Q Consensus 301 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 377 (532)
......-.++.++-. .......+.+...+...+ ..++.+++++|+ ..-..+.++.+++++...+...
T Consensus 289 v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~----l~~l~~~~g~~k------~~~~~s~~~~~~~l~~~~~i~~ 358 (477)
T TIGR01301 289 VYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIG----MEKLCRGWGAGK------RLWGIVNIILAICLAATVLVTY 358 (477)
T ss_pred HcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccch------hHHHHHHHHHHHHHHHHHHHHh
Confidence 110000000011000 111222333333333333 333355554321 2335676777777766665431
Q ss_pred HHhhhhccCCCcccccCCccccch-HHHHHHHHHHHHHHhHhhhhhhhhhhhcccCch--hHHHHHHHHHHHHHHHHHHH
Q 009538 378 KRRSLALSRPVGLEQRRGAISSLS-GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLN 454 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~ig~~l~ 454 (532)
.-.+..+.++. + .--..+.. .+..+..+.++|+.-+......++++++..|++ ..|..+|+.|++-.+.+.+.
T Consensus 359 ~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~ 434 (477)
T TIGR01301 359 VAKNSRYYDGD---G-ESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIV 434 (477)
T ss_pred hhhcccccccc---c-cccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHH
Confidence 00000000000 0 00001112 466777888899999999889999999999954 45999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009538 455 GFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 509 (532)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~ 509 (532)
....|.+.+..++. ..+.+.+-++.++++.+..+...|+.+
T Consensus 435 sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 435 SLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 98888865544321 234666667777777777777666544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=141.49 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=121.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
.-|...+...-..++.+++..+|.++|++ ||||.+.+....-++...+.+.++ |+
T Consensus 112 ~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp------------------------nf 166 (528)
T KOG0253|consen 112 EGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP------------------------NF 166 (528)
T ss_pred hhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC------------------------Ce
Confidence 45677888888999999999999999996 999999998888888777777764 67
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
.++++.|.+.|+|.|+ .|...++-.|.-|..+ |. ...-+. .....|.++...+.=.+..++||||.......
T Consensus 167 ~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~-r~-----~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~ 238 (528)
T KOG0253|consen 167 ASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH-RW-----LLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSST 238 (528)
T ss_pred ehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-CC-----cchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 7899999999999999 8888888888666422 11 122222 67778888887777667788999998776554
Q ss_pred -HHHHHHH-HHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCC
Q 009538 163 -MMFLSCA-MFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLP 207 (532)
Q Consensus 163 -~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (532)
.++.+.. ++...+||+...+.++.+ ..+.+..+.|.++...|
T Consensus 239 pl~~~a~f~~w~~ESpRf~~~~G~~~k---AletL~kiArmNg~qlp 282 (528)
T KOG0253|consen 239 PLMFAARFLVWVYESPRFYLAKGDDYK---ALETLHKIARMNGKQLP 282 (528)
T ss_pred HHHHHHHHHhhcccCcchhhhcCChHH---HHHHHHHHHHhcCCCCC
Confidence 3333322 334456776554444433 34455566666665554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=146.38 Aligned_cols=129 Identities=9% Similarity=0.013 Sum_probs=116.2
Q ss_pred Cchhh-hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 1 MKSIT-ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 1 ~~~~~-~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
+|+++ .+.+.++|..++.++++++|+++||+ |-|+++.++.+.+++.+++.++++
T Consensus 58 lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~----------------------- 113 (511)
T TIGR00806 58 FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT----------------------- 113 (511)
T ss_pred CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 46778 89999999999999999999999995 999999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
++..+.+.|++.|+++|+.. +...++..++|+ ++|+++.+++..+.++|.++++++++++ ..+|||+-+.+
T Consensus 114 -Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~------kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~L 184 (511)
T TIGR00806 114 -SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP------SRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTL 184 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHH
Confidence 47789999999999999999 899999999985 3346789999999999999999999994 56899987776
Q ss_pred HHH
Q 009538 160 PAF 162 (532)
Q Consensus 160 ~~~ 162 (532)
+.+
T Consensus 185 n~I 187 (511)
T TIGR00806 185 NII 187 (511)
T ss_pred HHH
Confidence 654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=153.24 Aligned_cols=398 Identities=14% Similarity=0.062 Sum_probs=226.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+|+.++......++.|+.+.+.||| |.|++.+.|.++..+|.++.++++++.
T Consensus 79 s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lssF~~~i~---------------------- 135 (509)
T KOG2504|consen 79 SSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSSFATSLW---------------------- 135 (509)
T ss_pred CccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHhhHH----------------------
Confidence 456689999999999999999999999996 999999999999999999999997532
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
..++..=++.|+|.|+........++.+|. ++|+.+.++-..+..+|.++-|.+.-++.+..|||+.+++.+
T Consensus 136 -~l~lt~gvi~G~G~~~~~~paiviv~~YF~-------kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~ 207 (509)
T KOG2504|consen 136 -QLYLTFGVIGGLGLGLIYLPAVVILGTYFE-------KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFG 207 (509)
T ss_pred -HHHHHHHHHhhccchhhhcchhhhhhhHhH-------HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHH
Confidence 355666778899999999889999998875 223457777777888888888888889999999999999877
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcc
Q 009538 162 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 241 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (532)
...+-.+..-...+|.....+|. ...+... .....+............++....+..........+..
T Consensus 208 ~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 275 (509)
T KOG2504|consen 208 GISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP-- 275 (509)
T ss_pred HHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------ccccccccccccccccccCCCCCCcccccchhhhhhCC--
Confidence 76655555555555533222222 0000000 00000000000000000000000000000000000000
Q ss_pred cCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhhh
Q 009538 242 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAI 321 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
+ ..+..+.......+..+..++...+...+...+....+.......+.+ ......+.... ......++.
T Consensus 276 ----~-~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~--~~~~g~~~~~a----a~l~Siigi 344 (509)
T KOG2504|consen 276 ----D-KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSY--AKSLGLSSNDA----AFLLSIIGV 344 (509)
T ss_pred ----c-cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCChhhh----HHHHHHHHH
Confidence 0 000000000000000111122111111111111111111111000001 00111111110 011223333
Q ss_pred hhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccch
Q 009538 322 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLS 401 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (532)
.+.++-++.+.+.|+- . .+......+++++.+++..+.... .+
T Consensus 345 ~~i~gRi~~G~laD~~--------~-----~~~~~~~~~~ll~~gl~~~~~p~~------------------------~~ 387 (509)
T KOG2504|consen 345 SDIIGRIILGLLADKP--------G-----IRALVLFLLTLLIAGLARLFLPFA------------------------TT 387 (509)
T ss_pred hhhhhhhhhhhhcCcc--------c-----cchHHHHHHHHHHHHHHHHHHHHh------------------------cc
Confidence 4444444444443332 1 223355566777776666444443 35
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcch
Q 009538 402 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKG 481 (532)
Q Consensus 402 ~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (532)
.+.++...++.|+..+...........|..+.+.-..+.|+..+.+.++..+++.+.+++.|.++
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--------------- 452 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--------------- 452 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------
Confidence 66777777888998888887777889999999999999999999999999999999998887653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 009538 482 RLDYFYYLVAALGLLNFGFFLLCA 505 (532)
Q Consensus 482 ~~~~~~~~~~~~~vv~~~~~~~~~ 505 (532)
+|+..|+..+++.+++....++..
T Consensus 453 ~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 453 NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred CeeeehhhcChHHHHHHHHHHHhH
Confidence 356777777777777766555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-14 Score=146.88 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=121.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
..+.+++.++|.+++.++.+++|.|.||+ .-.+.+....+.+++-.++.+... |+
T Consensus 80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------------s~ 134 (495)
T KOG2533|consen 80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------------SF 134 (495)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------------hh
Confidence 46789999999999999999999999996 988888888888888777766653 67
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhc------cccccchhh
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV------QSDVSWAWG 156 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i------~~~~gw~~~ 156 (532)
+.+++.|++.|+.+++..|....+++.+|.+++ ++..+++++....+|.++|.++...+ ....||||.
T Consensus 135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~ 208 (495)
T KOG2533|consen 135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWL 208 (495)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceee
Confidence 889999999999999999999999999997533 34569999999999999999887664 345799999
Q ss_pred hHHHHHHHHHHHHHHHhhccee
Q 009538 157 LGIPAFMMFLSCAMFFLGSRLY 178 (532)
Q Consensus 157 F~v~~~~~~l~~~~~~~~~~~~ 178 (532)
|++.+++.++..++.++..|..
T Consensus 209 FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 209 FIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred hhHHHHHHHHHHheEEEEecCC
Confidence 9999987777666655555553
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-14 Score=147.29 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=77.6
Q ss_pred hhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHH
Q 009538 325 LGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLW 404 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (532)
++.++..++..++ .+|+++| +.+.+|..+..++.+..... ...+.+.
T Consensus 275 ~~~~~~~~l~~~l----~~r~g~~-------~~~~~g~~~~~i~~~~~~~~----------------------~~~~~~~ 321 (448)
T PRK09848 275 VGTVASAPLVPGM----VARIGKK-------NTFLIGALLGTCGYLLFFWV----------------------SVWSLPV 321 (448)
T ss_pred HHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHc----------------------CchhHHH
Confidence 3344455554433 4554433 66777887777766554432 1234555
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhcccCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009538 405 LIPQLSLIGFSEAFTIIAEVEFYYKQFPEN-------MRSIGGSLAFVGFAISNYLNGFLISMVHRFT 465 (532)
Q Consensus 405 ~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~-------~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~ 465 (532)
..+.+++.++|++...+..+++..|..|.+ .+|..+|++++.+.+|..+++.+.+.+.+..
T Consensus 322 ~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 322 ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666677889999999999999999988754 4699999999999999999999999987654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=147.37 Aligned_cols=344 Identities=11% Similarity=0.064 Sum_probs=193.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFG-----RYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP 75 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~G-----rr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~ 75 (532)
+|+++.+...+...+...+-++ +|.++|++ + ||+.++++.++.. ...+..++.. +
T Consensus 58 ~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~-~~~~~~l~~~-~---------------- 117 (468)
T TIGR00788 58 LDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGS-AILYGLLPGK-V---------------- 117 (468)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHH-HHHHHhcccc-c----------------
Confidence 3567777888888888887666 99999996 8 7887888776653 1222222210 0
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchh
Q 009538 76 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAW 155 (532)
Q Consensus 76 ~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~ 155 (532)
.+.....+.+++.+++.+...++..+++.|..+ +++ +..+...++.|...++|.++|+.++|++.++.+|+.
T Consensus 118 ----~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~ 189 (468)
T TIGR00788 118 ----SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI 189 (468)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 123344458899999999999999999999887 222 233456677777888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhh-HHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCccc
Q 009538 156 GLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAS-TVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFR 234 (532)
Q Consensus 156 ~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (532)
.|++.+.+.++..+..+...++.....|+.++... .........
T Consensus 190 ~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 234 (468)
T TIGR00788 190 LFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGV----------------------------------- 234 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhH-----------------------------------
Confidence 99998776666543333222210001111000000 000000000
Q ss_pred chhhhcccCCcccccCCCCCCCCCccchhhhhhhh------hhhhhhHhHHHHHHHHHHHhcccch-hhhhhhhccCccc
Q 009538 235 CLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEV------KVLIRVIPIWASAIVYYVALVQQQT-YVVFQALQSDRRV 307 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 307 (532)
.+ . .++...+. +.+...+.+. ...+........ .++... ...
T Consensus 235 -~~-------------------~----~~~~~~~l~~~l~~~~i~~~l~fi---fl~~~~~~~~~~~~f~~~~----~~l 283 (468)
T TIGR00788 235 -LA-------------------N----VKVQILGLRGAIQLLEIAKPLIFI---FLSYANLPGASGSVFCATT----QCL 283 (468)
T ss_pred -HH-------------------H----HHHHHHHHHHHHhcHHHHHHHHHH---HHHHhhcCCCCceeEEEEc----ccC
Confidence 00 0 00000011 1111111111 110111111111 111111 112
Q ss_pred CCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 009538 308 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP 387 (532)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (532)
| .-....+.......++.+++..+.+++ .+| .+..+.+.++.++.+++......... +-+. ..+
T Consensus 284 G--~s~~~~G~~~~~~~v~~i~g~~~~~~~--------~~~---~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~~--~~g 347 (468)
T TIGR00788 284 P--GGPSFSGMSKVVGNLGSLCGVGGYDRF--------LKT---FPYRLLFGVTTLLYTLSSLFDLILVK-RWNL--AFG 347 (468)
T ss_pred C--CCcchhhhHHHHHHHHHHHHHHHHHHH--------Hhh---CCHHHHHHHHHHHHHHHHhCceeeee-cccc--ccC
Confidence 2 000112233333445555555554433 333 44556677777777666543221100 0000 000
Q ss_pred CcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009538 388 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 465 (532)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~ 465 (532)
..+.+......++.+++.++...+...++.+..|++.+|+..|+......+|..+++.+++.+.+..
T Consensus 348 -----------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 348 -----------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred -----------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0123344555677888888888888999999999999999999999999999999999988887654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-13 Score=141.41 Aligned_cols=143 Identities=12% Similarity=0.026 Sum_probs=109.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|..+.+++.++.. ...++++++|+++||+ |||++++++.+++.+|+++++++.+- ....+
T Consensus 60 s~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~------------------~i~~s 119 (591)
T PTZ00207 60 TQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE------------------VIEGS 119 (591)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc------------------cccCc
Confidence 5667787777643 3446777899999995 99999999999999999999997320 00136
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHH-HHHhhhhccccccchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI-SLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~-g~~~~g~i~~~~gw~~~F~v~ 160 (532)
++.+++.|+++|+|.+...+.+...+.++|| ++|+++.++......+|+++ +++..+++. .+|++.|++.
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-------~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l 190 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-------SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFL 190 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHH
Confidence 8899999999999999998889999999986 22356899999999999975 655666654 4678877776
Q ss_pred HHHHHHHHHHHHh
Q 009538 161 AFMMFLSCAMFFL 173 (532)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (532)
+++.++..++.+.
T Consensus 191 ~vl~~vv~ll~~~ 203 (591)
T PTZ00207 191 MSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHh
Confidence 6655554444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=145.45 Aligned_cols=144 Identities=8% Similarity=-0.012 Sum_probs=91.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhh----ccccc-hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSD----TYFGR-YKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACP 75 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD----~~~Gr-r~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~ 75 (532)
+++..++.+..+.-+.-++..|+.|+++| | ||| |+-++++.+..+++..++-..++.+
T Consensus 39 ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~llf~~p~~~---------------- 101 (473)
T PRK10429 39 LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLLFSAHLFE---------------- 101 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHHHcCCCCC----------------
Confidence 35677888888888889999999999999 7 499 5555667777777766663322111
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-------
Q 009538 76 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ------- 148 (532)
Q Consensus 76 ~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~------- 148 (532)
+...+..+++.-++.+++..+......+++.|..++. ++|++..++-....++|..+++.+...+.
T Consensus 102 --~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~-----~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~ 174 (473)
T PRK10429 102 --GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK-----REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGD 174 (473)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1123455666666777888788777888888875332 23345666656667777555554433221
Q ss_pred ccccchhhhHHHHHHHHHHH
Q 009538 149 SDVSWAWGLGIPAFMMFLSC 168 (532)
Q Consensus 149 ~~~gw~~~F~v~~~~~~l~~ 168 (532)
+..+|++...+.++..++..
T Consensus 175 ~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 175 RGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 12356666666555544433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=143.50 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=97.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhcc---ccchHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYKT-LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~---~Grr~~-l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
++..+++.+..+..+...+..|+.|+++||. +||||- ++.+.+.++++.+++...++.+
T Consensus 42 ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~----------------- 104 (444)
T PRK09669 42 LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFG----------------- 104 (444)
T ss_pred CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCC-----------------
Confidence 4677889999999999999999999999992 388555 5567777777766554432111
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-------
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------- 149 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~------- 149 (532)
+...+..+++.-++.+.+..+......++.+|+.++. ++|++..++.....++|..+++.+...+..
T Consensus 105 -~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~-----~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~ 178 (444)
T PRK09669 105 -ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP-----RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDE 178 (444)
T ss_pred -cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 1134566666666777666666666778888876432 233456777777788887777664333221
Q ss_pred cccchhhhHHHHHHHHHHHH
Q 009538 150 DVSWAWGLGIPAFMMFLSCA 169 (532)
Q Consensus 150 ~~gw~~~F~v~~~~~~l~~~ 169 (532)
..+|+..+.+.+++..+..+
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34788777776665444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=134.17 Aligned_cols=126 Identities=11% Similarity=0.129 Sum_probs=83.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhccc
Q 009538 352 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 431 (532)
Q Consensus 352 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~ 431 (532)
++..+.+.++.+..++=..+++...+ +........+....+.|+..++...+...|+.+.+
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~~-------------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~ 330 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFSD-------------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA 330 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcC-------------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 44556777777777666666665410 00011122233345789999999999999999999
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 432 PENMRSIGGSLAFV-GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 432 P~~~rg~~~gl~~~-~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
|++.|+++++++.. ...+|..++..+.|++.|..+..... .+..++.+.+++.++..+.+++..|
T Consensus 331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF----------DWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh----------hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999865 57899999999999998865432211 1233455555555666666665544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=134.33 Aligned_cols=145 Identities=9% Similarity=-0.038 Sum_probs=89.7
Q ss_pred chhhhHHH--HHHHHHHHHHHHhHH-HHHhhccccchHHHHHHHHHHHH-HHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTL--INIFSGTTNFATLLG-AFLSDTYFGRYKTLGFASVASFL-GMLVLSLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 2 ~~~~~~~i--~~~~~~~~~~~~l~~-G~laD~~~Grr~~l~~~~~~~~i-g~il~~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
|+++.+.+ .+.......+.+++. ++..||+ ||||..++.+.+... .....+... +.
T Consensus 34 ~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~~~~~~~~~~~--~~----------------- 93 (390)
T TIGR02718 34 PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVSACLASLALVG--PD----------------- 93 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHHHHHHHHHcCC--cc-----------------
Confidence 55666775 345566666666666 6689995 999997666533222 122222110 00
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
......++..-.+.++..+...+....+..|..++ ++++...+....+..+|.++|+...+++.+++|||..|
T Consensus 94 -~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~------~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f 166 (390)
T TIGR02718 94 -VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG------RTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAF 166 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 01123344555556667777777777776665321 23344556666777889999988888999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 009538 158 GIPAFMMFLSCAMFFL 173 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~ 173 (532)
++.++..++..+..+.
T Consensus 167 ~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 167 LLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988776655554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=143.27 Aligned_cols=327 Identities=14% Similarity=0.125 Sum_probs=200.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhh----ccccchHHHH-HHHHHHHHHHHHHHHH-h-hcccCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSD----TYFGRYKTLG-FASVASFLGMLVLSLT-A-AISKLHPPDCGNQDSGAC 74 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD----~~~Grr~~l~-~~~~~~~ig~il~~~a-~-~~~~~~~~~~~~~~~~~~ 74 (532)
++...+.+..+..+..++..|+.|+++| |+ ||||.++ ++.++.+++.+++... + +.+.
T Consensus 35 ~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~-------------- 99 (428)
T PF13347_consen 35 SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLLFSPPPAGLSF-------------- 99 (428)
T ss_pred CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHhhccccchhhh--------------
Confidence 5667788888888888999999999999 75 9876655 6777888877777654 2 1110
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc---
Q 009538 75 PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV--- 151 (532)
Q Consensus 75 ~~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~--- 151 (532)
......+++.-++..++.........+++.|..++.+ +|.+..+.-....++|.++...+.+.+.+..
T Consensus 100 ----~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~ 170 (428)
T PF13347_consen 100 ----TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG 170 (428)
T ss_pred ----hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 0134456777777799999998889999999865432 3345777777778888876656655544221
Q ss_pred ----cchhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCC
Q 009538 152 ----SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKL 227 (532)
Q Consensus 152 ----gw~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (532)
+|++..++.+++.++..++.+...|+..++.++.++.
T Consensus 171 ~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~--------------------------------------- 211 (428)
T PF13347_consen 171 DTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK--------------------------------------- 211 (428)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc---------------------------------------
Confidence 6888888877766665555444333300000000000
Q ss_pred CCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccch---hhhhhhhccC
Q 009538 228 PHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQT---YVVFQALQSD 304 (532)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 304 (532)
.++++..+...++ |.....+ +.....+.......+ ++.......+
T Consensus 212 ----------------------------~~~~~~~~~~~~n-r~~~~l~---~~~~~~~~~~~~~~~~~~y~~~~vl~~~ 259 (428)
T PF13347_consen 212 ----------------------------ISLRDSLRSLFRN-RPFRILL---LAFFLQWLAFALMNTFLPYYFTYVLGNE 259 (428)
T ss_pred ----------------------------cccccchhhhccc-chHHHHH---HHHHHHHhhhhhhhhHHHHHHHHHhcCc
Confidence 0000000001111 1111111 111222222211111 1111111111
Q ss_pred cccCCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009538 305 RRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL 384 (532)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 384 (532)
. ..+.+.....+..++..|+..++ .+|+++| +.+..+..+.+++.++..+..
T Consensus 260 -~--------~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~-------- 311 (428)
T PF13347_consen 260 -G--------LISIFMLIFFVASIVGSPLWGRL----SKRFGKK-------KVYIIGLLLAALGFLLLFFLG-------- 311 (428)
T ss_pred -h--------hhHHHHHHHHHHHHHHHHHHHHH----HHHccce-------eehhhhHHHHHHHHHHHHHHH--------
Confidence 1 11233334455556666664444 7777666 567778888777777666552
Q ss_pred cCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccC-------chhHHHHHHHHHHHHHHHHHHHHHH
Q 009538 385 SRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFL 457 (532)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~ig~~l~~~~ 457 (532)
..+.++..+..++.+++.+......+++.+|..+ ++..|...|++++...++..+++.+
T Consensus 312 --------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 312 --------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred --------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 1467888888899999999998899999998877 3557999999999999999999999
Q ss_pred HHHhcccc
Q 009538 458 ISMVHRFT 465 (532)
Q Consensus 458 ~~~~~~~~ 465 (532)
.+.+.+..
T Consensus 378 ~g~~l~~~ 385 (428)
T PF13347_consen 378 VGLLLALV 385 (428)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-12 Score=124.07 Aligned_cols=313 Identities=15% Similarity=0.161 Sum_probs=205.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|.++++.+++.=.+...+.+++..+|+.|+ |-++.+..++++.++|.++=...
T Consensus 44 ls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~------------------------- 97 (395)
T COG2807 44 LSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG------------------------- 97 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 4678899999999999999999999999995 99999999999999999986654
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F~v 159 (532)
+...++.+-.+.|.|.+......++++.+.||+ +.+..++.|....+.|+++++.+...+.++. |||....+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 245799999999999999999999999999973 2245899999999999999999999998887 79998888
Q ss_pred HHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhh
Q 009538 160 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 239 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (532)
=+...++++++++.-..+.+ .+..+. +..
T Consensus 171 WAl~allAl~~WlPq~~r~~--~~~~~~-------------------~~~------------------------------ 199 (395)
T COG2807 171 WALLALLALLIWLPQALREQ--AASIAT-------------------KLV------------------------------ 199 (395)
T ss_pred HHHHHHHHHHHHhhhccccc--cccccc-------------------ccc------------------------------
Confidence 77777777776665432211 000000 000
Q ss_pred cccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhh
Q 009538 240 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
....-| ++.......+.+-..+..++..+.+++..+..+.. +... .+.+
T Consensus 200 -------------~~~~vw--------~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~--sa~~--------aG~l 248 (395)
T COG2807 200 -------------SVRKVW--------RSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL--SAAE--------AGSL 248 (395)
T ss_pred -------------cccccc--------cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--CHHH--------hhhH
Confidence 000011 01111112334445666677777777776654432 2111 1111
Q ss_pred hhhh---hhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 320 AIFS---MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 320 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
..+. .+..-+.+|. +.+|..++ +...+....++.++.+.+.+.
T Consensus 249 lsl~~l~~~~~~ll~P~-------la~R~~n~------r~~~~~~~~~~l~G~~G~~~~--------------------- 294 (395)
T COG2807 249 LSLMQLAQLPTALLIPL-------LARRSKNQ------RPLVVLALLLMLVGLVGLLLA--------------------- 294 (395)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHhccc------chHHHHHHHHHHHHHHHHHHh---------------------
Confidence 1111 1222223333 24442222 233444444444555444443
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN-MRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 466 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~-~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~ 466 (532)
+.+..++| .+++|+|.+..++....++...+.+. ..+.-.|+.+....+-...+|.+.|.++|.++
T Consensus 295 P~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 295 PGQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred hhhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 12233444 37789998888888888887776554 44555566676777777789999999999764
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=123.17 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=93.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhcc---ccchHHHH-HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYKTLG-FASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~---~Grr~~l~-~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
++..++.+..+--+.-++.-|+.|+++||. |||||..+ ++.+.++++.+++-..+..+
T Consensus 43 ~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s------------------ 104 (460)
T PRK11462 43 PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLS------------------ 104 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCC------------------
Confidence 456667777777777889999999999962 59987766 45577777766554432111
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-------
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD------- 150 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~------- 150 (532)
+...+..+++.-++..++..+....-.++..|..++ .++|++..++...+.++|.++++.+...+...
T Consensus 105 ~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-----~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~ 179 (460)
T PRK11462 105 MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-----PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKP 179 (460)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 112244566666666777777777688888887543 24456788888888898888877665443322
Q ss_pred ccchhhhHHHHHHHHHHH
Q 009538 151 VSWAWGLGIPAFMMFLSC 168 (532)
Q Consensus 151 ~gw~~~F~v~~~~~~l~~ 168 (532)
.+|+....+.+++.++..
T Consensus 180 ~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 180 LGFQGGIAVLSVVAFMML 197 (460)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 356766655555444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=122.90 Aligned_cols=354 Identities=10% Similarity=0.015 Sum_probs=187.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHH--HH-HHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL--GM-LVLSLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~i--g~-il~~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+|.++.|.+.++..+...+.+|+.|.++||. |.||-++..+.+..+ +. ....+.+.+..
T Consensus 40 Ls~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l~~pff~~v~~pll~~----------------- 101 (412)
T PF01306_consen 40 LSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLLFGPFFIYVFGPLLQS----------------- 101 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 4678999999999999999999999999995 988876655443322 22 22233321110
Q ss_pred CchhHHHHHHHHHHHHH----hccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccc
Q 009538 78 TPWQLAFLFTGLGLMVI----GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 153 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~----g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw 153 (532)
| +.++-++.|+ ......|+..+|..+. . |+ .+-=++---+-..+|.+++..++|++.. .+-
T Consensus 102 ---n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-s----r~---~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p 166 (412)
T PF01306_consen 102 ---N---FWLGAIIGGIYLGLVFNAGVPLSEAYAERV-S----RR---NGFEYGRARMWGSIGFAIASLLAGILFN-INP 166 (412)
T ss_dssp ---T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-H----HH---HSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred ---H---HHHHHHHHHHHHHHHHcccchHHHHHHHHH-H----HH---hcCCcchHHHHhhHHHHHHHHHhheeee-eCc
Confidence 1 2233333333 3333345455544443 1 11 1112334445678888889999998875 556
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcc
Q 009538 154 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 233 (532)
Q Consensus 154 ~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (532)
+..||+.....++..++.+..+|..++..+..+ .. .. + .++.
T Consensus 167 ~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~----------------------~~----------~~--~----~~~~ 208 (412)
T PF01306_consen 167 NIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD----------------------AL----------GA--K----KDKV 208 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---SSSSS-SST----------------------TS----------SS-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc----------------------cc----------cc--C----CCCC
Confidence 788887665544444443433332111000000 00 00 0 0000
Q ss_pred cchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccce
Q 009538 234 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK 313 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (532)
+..+. .+.-..|++...+.+.......+..+.|+...+..... .+...|
T Consensus 209 ~~~~~-------------------------~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f-~~~~~g----- 257 (412)
T PF01306_consen 209 SLKDV-------------------------LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF-QSAGQG----- 257 (412)
T ss_dssp -HHHH-------------------------HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSHHHH-----
T ss_pred cHHHH-------------------------HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccC-----
Confidence 00000 01111222322333333333333333333332221110 011111
Q ss_pred eChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccccc
Q 009538 314 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (532)
+..+..++.+....=.+++. +..++.+|++ +.+.+.++..++++=...++..
T Consensus 258 --~~~~G~l~s~~v~~E~~~m~-~~p~li~rig-------~k~~Lllag~i~~iRi~~~~~~------------------ 309 (412)
T PF01306_consen 258 --NQMYGYLWSVQVFLEALMMF-FSPWLINRIG-------AKNLLLLAGVIMAIRIIGSGFA------------------ 309 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred --hhHHhHHHHHHHHHHHHHHH-HHHHHHHhcC-------hHhHHHHHHHHHHHHHHHHhhh------------------
Confidence 22222333332222111110 0112255544 3356666666666666666654
Q ss_pred CCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 009538 394 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FVGFAISNYLNGFLISMVHRFTKGASTGD 472 (532)
Q Consensus 394 ~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 472 (532)
.+++++++.-.+.++-..+...+..-|+.+.+|++..++...+. ++...+|..+.+.+.|.+.|..
T Consensus 310 ------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------- 376 (412)
T PF01306_consen 310 ------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------- 376 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------
Confidence 46778888889999988888889999999999999999998885 7889999999999999998854
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 473 WLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
++...|++++++.++..+.-.+..+
T Consensus 377 ---------G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 377 ---------GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ---------CcHHHHHHHHHHHHHHHHHheeeec
Confidence 3556888888777666665555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-09 Score=109.38 Aligned_cols=325 Identities=11% Similarity=0.094 Sum_probs=190.0
Q ss_pred HHHhHHHHHhhcccc-----chHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 009538 19 FATLLGAFLSDTYFG-----RYKT-LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLM 92 (532)
Q Consensus 19 ~~~l~~G~laD~~~G-----rr~~-l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 92 (532)
...+..|+.+|+. + ||.- ++.|.+++..|..+..++.-.-+ . +.....++.+.......++-.+.
T Consensus 29 p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~------~~~~~~~~~~~g~~~a~l~F~l~ 99 (403)
T PF03209_consen 29 PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--E------SGQQSSGPFWLGLALAALAFLLY 99 (403)
T ss_pred HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--c------cccccccccHHHHHHHHHHHHHH
Confidence 3678899999997 7 5544 45567777777777777542111 0 00001223334556677788889
Q ss_pred HHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH----HHHHHHHHH
Q 009538 93 VIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI----PAFMMFLSC 168 (532)
Q Consensus 93 G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v----~~~~~~l~~ 168 (532)
|+|.+.......++++|..+|+ +|.+..++.|.+..+|.+++.++.+.+.+.++-.-...+ ..+...+.+
T Consensus 100 G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ 173 (403)
T PF03209_consen 100 GLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNL 173 (403)
T ss_pred HhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 234589999999999999999999988776654333222 222333333
Q ss_pred HHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcccCCcccc
Q 009538 169 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQI 248 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (532)
+..|-.+++.++..+..+ +++..+.+.
T Consensus 174 ia~wg~E~r~~~~~~~~~-------------------------------------------~~~~~f~~a---------- 200 (403)
T PF03209_consen 174 IALWGQEPRRSRRAAAAE-------------------------------------------RPRPPFREA---------- 200 (403)
T ss_pred HHHHhcccCCcccccCCC-------------------------------------------CCCccHHHH----------
Confidence 333333333221110000 000001100
Q ss_pred cCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee-Chhhhhhhhhhhh
Q 009538 249 KSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI-PAASYAIFSMLGL 327 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 327 (532)
|++... + .+.++++.. +++....+.+.- ..+-.... +.++ +.+ .+..++.....+.
T Consensus 201 ---------~~~~~~-~-~~a~~f~~f--l~l~t~a~~~QD----~iLEPygg---~Vfg---msv~eTT~Lta~~~~G~ 257 (403)
T PF03209_consen 201 ---------WRQVWA-S-PQARRFFVF--LFLGTLAFFMQD----VILEPYGG---EVFG---MSVGETTRLTAFWGGGT 257 (403)
T ss_pred ---------HHHHHh-C-CChhHHHHH--HHHHHHHHHhhH----HHcCCchh---HHcC---CCHHHHHHHHHHHHHHH
Confidence 000000 0 011222111 111122222211 11111111 1111 111 1334455556666
Q ss_pred HhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHH
Q 009538 328 TIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIP 407 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 407 (532)
+++..+.+++.. ++ .++.+...+|..++.+++....... ...+.+.+..
T Consensus 258 L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~---------------------~~~~~~~~~~ 306 (403)
T PF03209_consen 258 LLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAG---------------------PLGSPWLFRP 306 (403)
T ss_pred HHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHH---------------------hcccchHHHH
Confidence 666666555422 12 2223455567777777765544431 1235677788
Q ss_pred HHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009538 408 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 465 (532)
Q Consensus 408 ~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~ 465 (532)
..+++|++.++......+...+..+++..|..+|.|...+.++..++..+.+.+.|..
T Consensus 307 ~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 307 GVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999875
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-12 Score=109.66 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 009538 10 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 89 (532)
Q Consensus 10 ~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 89 (532)
.+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++.++. +++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 58 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIAR 58 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHH
Confidence 3456778889999999999996 999999999999999988887763 467788899
Q ss_pred HHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHH
Q 009538 90 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 169 (532)
Q Consensus 90 ~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~ 169 (532)
++.|++.+...+....++.|.+|++ .|++..+..+...++|..++|.+.+++.+..+|++.|++..+..++..+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753 2345799999999999999999999999989999999987776555554
Q ss_pred HHHh
Q 009538 170 MFFL 173 (532)
Q Consensus 170 ~~~~ 173 (532)
..+.
T Consensus 133 ~~~~ 136 (141)
T TIGR00880 133 LLAF 136 (141)
T ss_pred HHhh
Confidence 4433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-08 Score=108.72 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.|.+.+.-++.|+..+...+.+-++.++..|+...+...|++.++...++.+||.+.+.+.+.+++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~------------- 445 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS------------- 445 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence 4455555667789999999999999999999999999999999999999999999999999887632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLL 503 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~ 503 (532)
..+.+..+.++.+++++++..
T Consensus 446 --~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 446 --QRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred --chhHHHHHHHHHHHHHHHHhh
Confidence 223455555666666665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=114.52 Aligned_cols=81 Identities=6% Similarity=-0.153 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc----------
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD---------- 150 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~---------- 150 (532)
++..++++-++.|.|.+..++..++|+++..++++. ++.+++.+....+|..+||++++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~------~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETA------ASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchH------HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 688999999999999999999999999998775432 2359999999999999999998876521
Q ss_pred ------ccchhhhHHHHHHHHHH
Q 009538 151 ------VSWAWGLGIPAFMMFLS 167 (532)
Q Consensus 151 ------~gw~~~F~v~~~~~~l~ 167 (532)
.+|+++|++-+.+.++.
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~ 105 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVL 105 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 47999999655543333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-09 Score=109.76 Aligned_cols=331 Identities=13% Similarity=0.125 Sum_probs=186.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhcc---ccchH-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTY---FGRYK-TLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~---~Grr~-~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
++..++.+..+-=+--++.-|+.|.+.||. ||||| =++.+.+.+++.+.++-.++....
T Consensus 46 s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~----------------- 108 (467)
T COG2211 46 SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM----------------- 108 (467)
T ss_pred cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc-----------------
Confidence 445566666666666778899999999964 59855 456666888888888887752110
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-----c--c
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-----S--D 150 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-----~--~ 150 (532)
..+....++.-++.+++...+.....++.+++.+. + ++|.+..++.....++|.++...+.+.+. + .
T Consensus 109 -~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~---~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~ 182 (467)
T COG2211 109 -TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--P---QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKA 182 (467)
T ss_pred -CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 12455666777788888877766677778887543 2 34466888889999999776655544432 2 3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHh-hcceeeecCCCCC-chhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCC
Q 009538 151 VSWAWGLGIPAFMMFLSCAMFFL-GSRLYAKVKPEGS-PLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 228 (532)
Q Consensus 151 ~gw~~~F~v~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (532)
.||+..-++-++...+..+..+. .++|..+.++.++ ...+....
T Consensus 183 ~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~---------------------------------- 228 (467)
T COG2211 183 LGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDS---------------------------------- 228 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHH----------------------------------
Confidence 46666555544433333332222 2223221111110 00000000
Q ss_pred CCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhh-hccCccc
Q 009538 229 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRV 307 (532)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 307 (532)
.....+ .|.++..+.+. .+.+...+...+...+.. ..++..
T Consensus 229 ---------------------------------~~~~~~-Nrp~~~~l~~~---l~~~~~~~i~~s~~~yy~~y~lg~~- 270 (467)
T COG2211 229 ---------------------------------FLLIFK-NRPLLLLLLMN---LLLFIAFNIRGSIMVYYVTYVLGDP- 270 (467)
T ss_pred ---------------------------------HHHHHc-cchHHHHHHHH---HHHHHHHHHHhhhhheeEEEEcCCh-
Confidence 000001 11122222222 222222222222111111 111110
Q ss_pred CCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 009538 308 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP 387 (532)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (532)
...............+++.++..+ +.+|+++| +...++.++..++.+..-+.
T Consensus 271 -----~l~~~~~~~~~~~~~l~~~~~~p~----L~~~~gkk-------~~~~~~~~~~~i~~~~~~f~------------ 322 (467)
T COG2211 271 -----ELFAYLLLLASGAGLLIGLILWPR----LVKKFGKK-------KLFLIGLLLLAVGYLLLYFT------------ 322 (467)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhHHH----HHHHhchH-------HHHHHHHHHHHHHHHHHHhh------------
Confidence 011122222233333333444222 35555555 67777877777776666654
Q ss_pred CcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhccc-------CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009538 388 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-------PENMRSIGGSLAFVGFAISNYLNGFLISM 460 (532)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~-------P~~~rg~~~gl~~~~~~ig~~l~~~~~~~ 460 (532)
+..+.+..++..++.++|.+...+..|+++.|.. -++..|...|.+.+++-+|..++..+.++
T Consensus 323 ----------~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 323 ----------PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred ----------cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234566666778889999999999999888754 45667888999999999999999999999
Q ss_pred hcccc
Q 009538 461 VHRFT 465 (532)
Q Consensus 461 ~~~~~ 465 (532)
+++..
T Consensus 393 ~L~~~ 397 (467)
T COG2211 393 ILGAI 397 (467)
T ss_pred HHHHc
Confidence 98765
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-11 Score=110.98 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
++...+-+.|++--.+.+.++|++.||.+|-|..-++-+....+|.++.+.-- ...+++
T Consensus 79 akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg---------------------i~~aFw 137 (459)
T KOG4686|consen 79 AKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG---------------------ISHAFW 137 (459)
T ss_pred eeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch---------------------HHHHHH
Confidence 34556667788888899999999999999999888888888888888876531 124799
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 152 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g 152 (532)
.+.++|++.|+|.-..-.+-+.|..-+|+.. +++-.+++......+|..+-..+.+++-++.+
T Consensus 138 ~M~~GRF~FGIGgESlAVaQN~yav~wFKGK------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 138 TMLAGRFLFGIGGESLAVAQNKYAVYWFKGK------ELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHhhheeeccCchhhhhhhcceeEEEecCc------cccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999999999999888888899999998752 34557888888888888877667777655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=116.96 Aligned_cols=142 Identities=19% Similarity=0.142 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHH
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 84 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (532)
+.+...+.+.++..++.++.|++.||+ ||||.+..+..+.+++.++..+.+ +...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 304 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP------------------------SPWM 304 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc------------------------cHHH
Confidence 345666778888889999999999996 999999999998888888777653 4556
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHH
Q 009538 85 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMM 164 (532)
Q Consensus 85 l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~ 164 (532)
+++.+++.|++.+...|.....+.|.+|+ +.+++.+++++...++|..+++.+.|++.++.||++.|++.++..
T Consensus 305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 378 (399)
T PRK05122 305 ALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAA 378 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 77889999999998888877777887653 344678999999999999999999999999999999999988877
Q ss_pred HHHHHHHHhhcce
Q 009538 165 FLSCAMFFLGSRL 177 (532)
Q Consensus 165 ~l~~~~~~~~~~~ 177 (532)
+++.+..+...++
T Consensus 379 ~~~~~~~~~~~~~ 391 (399)
T PRK05122 379 LLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHhccc
Confidence 7766655554444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=116.48 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
...+.+.++..+...++.++.|+++||+ |||+++.++.++.+++..+...+.. ++.++.
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~~--------------------~~~~~~ 309 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGDP--------------------EYFGYA 309 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc--------------------chhhHH
Confidence 3457777888888889999999999996 9999999999999998877776421 011345
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhH-HHHhHHHHHHHHhhhhcccc------ccchhh
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSD------VSWAWG 156 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~-~~~~~G~~~g~~~~g~i~~~------~gw~~~ 156 (532)
.+++.+++.|++.+...+....+++|++|+ +.+++.+++.+ ....+|.++||.++|++.++ +||+++
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~------~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~ 383 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPV------HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTM 383 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHH
Confidence 678899999999999999999999999874 34467899987 56789999999999999876 579999
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 009538 157 LGIPAFMMFLSCAMFFLGSR 176 (532)
Q Consensus 157 F~v~~~~~~l~~~~~~~~~~ 176 (532)
|.+.++..+++.+.++...+
T Consensus 384 f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 384 WLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99887766666555554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-11 Score=130.78 Aligned_cols=171 Identities=15% Similarity=0.224 Sum_probs=3.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCC-CC------CCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP-PD------CGNQDSGA 73 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~-~~------~~~~~~~~ 73 (532)
+++++.+++.+.|.++..+..++..+.++|. -|=|-+.+|.+++++|++++++-..+..-+. .. ..+.+...
T Consensus 35 l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~ 113 (539)
T PF03137_consen 35 LSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL 113 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence 4678999999999999999999999999995 7778899999999999999998543332111 00 00112233
Q ss_pred C-------------------CCCCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHh
Q 009538 74 C-------------------PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT 134 (532)
Q Consensus 74 ~-------------------~~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~ 134 (532)
| ......-+..|+++.++.|+|+....+...+|+-|..++++. ...+++++....
T Consensus 114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s------plYiGi~~~~~~ 187 (539)
T PF03137_consen 114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS------PLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------SSS---------------------------------------
T ss_pred ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC------ccchhhhhHHhh
Confidence 3 111112478899999999999999999999999998775432 347899999999
Q ss_pred HHHHHHHHhhhhcccc---------------------c-cchhhhHHHHHHHHHHHHHHHhhccee
Q 009538 135 FAMMISLTVIVYVQSD---------------------V-SWAWGLGIPAFMMFLSCAMFFLGSRLY 178 (532)
Q Consensus 135 ~G~~~g~~~~g~i~~~---------------------~-gw~~~F~v~~~~~~l~~~~~~~~~~~~ 178 (532)
+|.++|.++++..... . -|+..|++.+++.++..+.++.+.++.
T Consensus 188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 9999999998875421 1 277777777666555555444443343
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=114.15 Aligned_cols=139 Identities=8% Similarity=-0.009 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
.+.+.+.+++.+...++.+++|+++||+ |||+.+..+..+.+++.++.++++ +.+
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~------------------------~~~ 316 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT------------------------GPL 316 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc------------------------cHH
Confidence 4567888888888889999999999995 999999999999999988888764 455
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
.+++.+++.|++.+...+....++.|.+|++. +++..+. +.....+|.++||.++|++.+.+||+..|.+.++
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~ 390 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG 390 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 67888999999998888888888999886421 2234443 5667889999999999999999999999998777
Q ss_pred HHHHHHHHHHh
Q 009538 163 MMFLSCAMFFL 173 (532)
Q Consensus 163 ~~~l~~~~~~~ 173 (532)
..++..++.+.
T Consensus 391 ~~~i~~~~~~~ 401 (420)
T PRK09528 391 IVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHH
Confidence 66555544433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-08 Score=107.21 Aligned_cols=170 Identities=16% Similarity=0.228 Sum_probs=122.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCC-----------------
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHP----------------- 63 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~----------------- 63 (532)
+++.+.+++.+.|.++..+...+..|.+-|. =|=|.+-+|++++++|++++++-..+..-..
T Consensus 129 i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~ 207 (735)
T KOG3626|consen 129 ISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSL 207 (735)
T ss_pred CCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcccc
Confidence 3567789999999999999999999999995 7888999999999999999998522111000
Q ss_pred -CCCCCCCCCCCCCCCc---------h-hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHH
Q 009538 64 -PDCGNQDSGACPGPTP---------W-QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT 132 (532)
Q Consensus 64 -~~~~~~~~~~~~~~~~---------~-~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~ 132 (532)
..+.+++...|-...+ . -+..++++.++.|+|.....|...+|+-|...+.+ . ...+++.+.+
T Consensus 208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~-S-----plYlgi~~~~ 281 (735)
T KOG3626|consen 208 SFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN-S-----PLYLGILYSM 281 (735)
T ss_pred chhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC-C-----cHHHHHHHHH
Confidence 0111111223322111 1 35588999999999999999999999999654322 2 3478999999
Q ss_pred HhHHHHHHHHhhhhcccc---c----------------cchhhhHHHHHHHHHHHHHHHhhcce
Q 009538 133 FTFAMMISLTVIVYVQSD---V----------------SWAWGLGIPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 133 ~~~G~~~g~~~~g~i~~~---~----------------gw~~~F~v~~~~~~l~~~~~~~~~~~ 177 (532)
..+|.++|.++|++.... + -|+..|++.+.+.++..+.++.+.+.
T Consensus 282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999986421 1 27778888777777666655554444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=110.24 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=112.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+.+.++..++.+++|+++||+ |||+.+.++.++..++.++..+.++. +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 294 (377)
T TIGR00890 238 SDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIPML----------------------N 294 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHcccc----------------------h
Confidence 456678888999999999999999999996 99999999999999988887765321 1
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...++...++.|++.|...+..+.++.|.+|++ .+++.+++++...++|..++|.+.|++.++.||++.|.+.+
T Consensus 295 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~ 368 (377)
T TIGR00890 295 DVLFLATVALVFFTWGGTISLFPSLVSDIFGPA------NSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTG 368 (377)
T ss_pred hHHHHHHHHHHHHHhccchhccHHHHHHHhhhh------hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence 233556678889999988888888999988753 23458999999999999999999999999999999999877
Q ss_pred HHHHHH
Q 009538 162 FMMFLS 167 (532)
Q Consensus 162 ~~~~l~ 167 (532)
+..+++
T Consensus 369 ~~~~~~ 374 (377)
T TIGR00890 369 AFALTS 374 (377)
T ss_pred HHHHHh
Confidence 765554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-09 Score=111.37 Aligned_cols=137 Identities=11% Similarity=-0.008 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHH
Q 009538 7 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 86 (532)
Q Consensus 7 ~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (532)
+.+.+++.++..++.+..|+++||+ |||+.+..+.....++.+...+.+ +.+.++
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ 315 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ------------------------TPLQLG 315 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc------------------------cHHHHH
Confidence 3445556677778889999999996 999999999888888777766653 355678
Q ss_pred HHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHH
Q 009538 87 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFL 166 (532)
Q Consensus 87 ~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l 166 (532)
+.+++.|++.+...|...+++.+..+++ .+++.++.++...++|..+||.++|++.++.||++.|++.+++.++
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~ 389 (408)
T PRK09874 316 ILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLF 389 (408)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 8999999999999998888887765432 2345789999999999999999999999999999999998887777
Q ss_pred HHHHHHhh
Q 009538 167 SCAMFFLG 174 (532)
Q Consensus 167 ~~~~~~~~ 174 (532)
+.+..+..
T Consensus 390 ~~~~~~~~ 397 (408)
T PRK09874 390 NAVYSWNS 397 (408)
T ss_pred HHHHHHHH
Confidence 66654443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=110.63 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=107.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+++.+.+...+...++.+++|+++||+ |||+.+..+.+...+.......+. +
T Consensus 250 ~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 304 (393)
T PRK15011 250 PEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMAH------------------------S 304 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHh------------------------h
Confidence 456677777777777778899999999996 999998887766665544443332 3
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...+++.+++.+++.|...+..+.+..|.+|+ + + ++..+.+....++|..+||.++|++.+++||++.|++..
T Consensus 305 ~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~-~-----g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~ 377 (393)
T PRK15011 305 PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q-A-----GSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C-c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45677788888888887777777788887753 1 2 347888888899999999999999999999999999887
Q ss_pred HHHHHHHHHHH
Q 009538 162 FMMFLSCAMFF 172 (532)
Q Consensus 162 ~~~~l~~~~~~ 172 (532)
+..++++++.+
T Consensus 378 ~~~~~~~~~~~ 388 (393)
T PRK15011 378 VMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHH
Confidence 77766665544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-08 Score=98.89 Aligned_cols=120 Identities=12% Similarity=0.059 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
..+-|...+|.+.+.....++=|+.|++ |-|.+.+++.++-++|+.+=..+. .|.+. +.++
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~-----------------~~f~ 139 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP-----------------PLFR 139 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc-----------------ccch
Confidence 3456888899999999999999999995 999999999999999999988874 23222 2344
Q ss_pred --HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc
Q 009538 84 --FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 148 (532)
Q Consensus 84 --~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~ 148 (532)
..+.|..+.+.+.-.+.-...-+-+-||++.+ |..+.+.-.++..+|.++|.++.+.+.
T Consensus 140 ~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 140 RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred hhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceec
Confidence 77788888888888877776777778888633 233455555566677777766666654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-09 Score=109.25 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=87.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccc-hHHHHHHHHHHHHHHHHH-HHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGR-YKTLGFASVASFLGMLVL-SLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Gr-r~~l~~~~~~~~ig~il~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++..|+++++..++.++..+..|+...|. |+ |+-++.+.++..+|.++. +.+. .|. .
T Consensus 70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~-~~~-------------------~ 128 (488)
T KOG2325|consen 70 ATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAY-VPN-------------------G 128 (488)
T ss_pred cchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHHHHHHHHHHHHHHh-ccc-------------------c
Confidence 45569999999999999999999999996 86 888999999999999998 5543 221 1
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhh
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 146 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~ 146 (532)
..+.++++|++.|+|.|.... .-+|++|...++| |. ++++....+..+|..+||.+...
T Consensus 129 ~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~d-R~-----rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 129 VKYLMLVARILTGVGVGNFAV-LRAYIADASTVED-RP-----RAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred hHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccc-hH-----HHHHHhhhHHHHHHHHhHHHHHH
Confidence 577899999999999887655 7788888654432 22 25666555556666666665444
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=117.92 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 009538 8 TLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFT 87 (532)
Q Consensus 8 ~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (532)
....+..++..++.+++|+++||+ |||++++++.++.+++.++.++++ +...+++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~------------------------s~~~ll~ 653 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN------------------------SESAMIA 653 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc------------------------cHHHHHH
Confidence 334455677888999999999995 999999999999999998888874 3445777
Q ss_pred HHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHH
Q 009538 88 GLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 167 (532)
Q Consensus 88 ~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~ 167 (532)
.+++.|+..++..+...++++|++|. +.|++++++.+....+|.++||.+++.+... +...+|++.+++.+++
T Consensus 654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 654 LLCLFGGLSIAAWNALDVLTVELYPS------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 78888888888889999999999874 3456799999999999999999999987653 4567788777766665
Q ss_pred HHHHH
Q 009538 168 CAMFF 172 (532)
Q Consensus 168 ~~~~~ 172 (532)
.++.+
T Consensus 727 ~ll~~ 731 (742)
T TIGR01299 727 GLLAL 731 (742)
T ss_pred HHHHH
Confidence 55433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=105.65 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=122.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchH-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYK-TLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~-~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++.+.+++...+.++..++.++.|++.||+ |||+ .+..+..+..++.++.....
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~------------------------ 263 (352)
T cd06174 209 SAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLALAP------------------------ 263 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhc------------------------
Confidence 567788999999999999999999999996 9999 99999999999999888864
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...+++..++.|++.+...+....++.|.+|+ +.|++.++.+....++|..++|.+.+++.+..+|++.|.+.
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~ 337 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPP------EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 456788999999999999999999999998764 34467899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 009538 161 AFMMFLSCAMF 171 (532)
Q Consensus 161 ~~~~~l~~~~~ 171 (532)
++..++..+..
T Consensus 338 ~~~~~i~~i~~ 348 (352)
T cd06174 338 AALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHh
Confidence 88777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=110.31 Aligned_cols=137 Identities=17% Similarity=0.122 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.+.....+.++..++.++.|++.||+ ||||.+..+..+.+++.++..++. +...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~ 305 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP------------------------TAWVA 305 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc------------------------cHHHH
Confidence 45566677777888999999999995 999999999999999888777653 45567
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHH
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMF 165 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~ 165 (532)
+++.++.|++.+...|.....+.|.+++ +.|++.+++++...++|..+||.+.|++.++.||++.|.+.++..+
T Consensus 306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~ 379 (392)
T PRK12382 306 LAGAALTGAGCSLIFPALGVEVVKRVPS------QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAV 379 (392)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7889999999998888888888887763 3346789999999999999999999999999999999999888777
Q ss_pred HHHHHHHh
Q 009538 166 LSCAMFFL 173 (532)
Q Consensus 166 l~~~~~~~ 173 (532)
++.++.+.
T Consensus 380 ~~~~~~~~ 387 (392)
T PRK12382 380 LGIIVTIL 387 (392)
T ss_pred HHHHHHHh
Confidence 66665443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=107.92 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=109.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.......++.+++|+++||+ |||+++.++.+...+..++..+.+ +
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 287 (375)
T TIGR00899 233 PDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN------------------------S 287 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH------------------------H
Confidence 455667777776666777889999999996 999999988777666555544443 4
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.+.+++.+++.|++.|...|....+..|.+|+ + +++.+++++...++|..+||.++|++.+..||+..|++.+
T Consensus 288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~ 360 (375)
T TIGR00899 288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 56677889999999998888888888887652 1 1357899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 009538 162 FMMFLSCAMFF 172 (532)
Q Consensus 162 ~~~~l~~~~~~ 172 (532)
+..+++.++.+
T Consensus 361 ~~~~~~~~~~~ 371 (375)
T TIGR00899 361 VMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHh
Confidence 87766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-08 Score=102.35 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=185.7
Q ss_pred HHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 009538 14 SGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMV 93 (532)
Q Consensus 14 ~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 93 (532)
.+...+.++.-|.++|+| |||..+........+..++..+.. ++.++ +.+
T Consensus 72 ~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~~-------------------------~~~~~----~~~ 121 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQG-------------------------YWFFL----LLG 121 (463)
T ss_pred HHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHHH-------------------------HHHhh----hcc
Confidence 456778999999999996 999999999999999999998873 23333 444
Q ss_pred Hhc--cccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHHHH
Q 009538 94 IGA--GGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMF 171 (532)
Q Consensus 94 ~g~--g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~~~ 171 (532)
+.. +++.....++++|..+.+ .|...+++.......+..++|.+++++.+..|.-..|.+..+..++..+..
T Consensus 122 l~g~~~~~~s~~~a~vadis~~~------~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~ 195 (463)
T KOG2816|consen 122 LSGGFSAIFSVGFAYVADISSEE------ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYM 195 (463)
T ss_pred cccchhhhhhhhhhheeeccchh------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 433 455777889999986532 345678888888889999999999999999999999999999888877766
Q ss_pred HhhcceeeecCCCCC-chhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhcccCCcccccC
Q 009538 172 FLGSRLYAKVKPEGS-PLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKS 250 (532)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (532)
+...|+...++.++. .. +.. .+ ... ......+
T Consensus 196 ~~~l~Esl~~~~~~~~~~-------------~~~-~~-------------~~~----~~~~~~~---------------- 228 (463)
T KOG2816|consen 196 LLFLPESLQEKERSDATL-------------REL-TP-------------GSL----DSSHVAD---------------- 228 (463)
T ss_pred hhccccccCccccccccc-------------ccc-CC-------------Ccc----cchhhhh----------------
Confidence 665555322211110 00 000 00 000 0000000
Q ss_pred CCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChh-------hhhhhh
Q 009538 251 DGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAA-------SYAIFS 323 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 323 (532)
++.... ..+..|..+.++ +......+.-.....-. . .......++ +... ..+...
T Consensus 229 ------~~~~~~--~~~~~r~~l~l~--l~~~~~~~~~~~~~~~~-~--~~yl~~~f~-----w~~~~~s~~~~~~~~~~ 290 (463)
T KOG2816|consen 229 ------AFQSLT--KVGPDRLLLLLL--LVAFLSSLPEAGGASDV-L--LLYLKAKFG-----WNKKEFSDLLSLVSILG 290 (463)
T ss_pred ------hhhhhc--ccCCCccchHHH--HHHHHHHHHHhcCceeE-E--EEEEeeecC-----cCHHHHHHHHHHHHHHH
Confidence 000000 001111111111 11111111111111100 0 011112222 2211 222233
Q ss_pred hhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH
Q 009538 324 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL 403 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (532)
.++.++..|++ ...++.| +.+..|+..-.+..++.++.+ ..|
T Consensus 291 ~i~~l~~~~~l-------~~~l~~~-------~~i~lGl~~~~~~~~~~af~~------------------------~~w 332 (463)
T KOG2816|consen 291 IISQLLLLPLL-------SSILGEK-------RLISLGLLSEFLQLLLFAFAT------------------------ETW 332 (463)
T ss_pred HHHHHHHHHHH-------HHHHhhh-------hHhhHHHHHHHHHHHHHHHhc------------------------cch
Confidence 33444444332 2233433 467788888888888888763 223
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 404 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 404 ~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
. ............+..|...++++....++.+|+.+++......+++.+++.+.+.+...
T Consensus 333 ~-~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 333 M-MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred h-hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2 23334445556677888899999999999999999999999999999999998888544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-08 Score=105.86 Aligned_cols=133 Identities=13% Similarity=0.046 Sum_probs=99.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+++.+.+.++..++.+++|+++||+ |||+++.++..+..++.++...... .+
T Consensus 309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 365 (496)
T PRK03893 309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG----------------------AN 365 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc----------------------cH
Confidence 567889999999999999999999999995 9999999887777766655443321 13
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.+.+.+..++.+.......+..+.++.|.+|++ .+++.+++++...++|..+||.++|++.+++||+..+.+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 334444444444433344566778888987642 33567999999999999999999999999999998886655
Q ss_pred HH
Q 009538 162 FM 163 (532)
Q Consensus 162 ~~ 163 (532)
..
T Consensus 440 ~~ 441 (496)
T PRK03893 440 FS 441 (496)
T ss_pred HH
Confidence 43
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=103.93 Aligned_cols=136 Identities=12% Similarity=0.168 Sum_probs=106.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++.++.|++.||+ |||+++..+..+..++.++.. ..
T Consensus 233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~------------------------- 285 (381)
T PRK03633 233 SDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ------------------------- 285 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh-------------------------
Confidence 456678888899999999999999999996 999999998888887765543 11
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
..+.....+.|++.+...|.....+.|..|++ .++...+.+....++|.++||.++|++.++.+|++.|.+.+
T Consensus 286 -~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~ 358 (381)
T PRK03633 286 -AAMAPALFILGAAGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIA 358 (381)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 12345677788888888899998888876542 11235666677889999999999999999999999999977
Q ss_pred HHHHHHHHHH
Q 009538 162 FMMFLSCAMF 171 (532)
Q Consensus 162 ~~~~l~~~~~ 171 (532)
...++..+..
T Consensus 359 ~~~l~~~~~~ 368 (381)
T PRK03633 359 SVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHH
Confidence 7766555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=105.68 Aligned_cols=140 Identities=12% Similarity=0.049 Sum_probs=96.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL-TAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
..+...+...+.++..++.+++|+++||+ |||+++..+.++..++.+.+.. ..+ .+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 341 (490)
T PRK10642 285 EDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFILINS----------------------NV 341 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhC----------------------CC
Confidence 44556667777888889999999999996 9999999888766554443222 110 13
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F~v~ 160 (532)
...++++|++.|++.+...+....++.|.+|++ .|++.++..+....++..++|.+.+++.+.. +|+.++++.
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~ 415 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYL 415 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 566788999998887776666777888888752 2345677655556666778889989887654 477666655
Q ss_pred HHHHHHHHHHH
Q 009538 161 AFMMFLSCAMF 171 (532)
Q Consensus 161 ~~~~~l~~~~~ 171 (532)
.+..++.++..
T Consensus 416 ~~~~~i~~~~~ 426 (490)
T PRK10642 416 MVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHH
Confidence 54444444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-07 Score=97.69 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=97.2
Q ss_pred HHHhHHHHHhhcc--cc--chHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 009538 19 FATLLGAFLSDTY--FG--RYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI 94 (532)
Q Consensus 19 ~~~l~~G~laD~~--~G--rr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 94 (532)
..-++.|.++|.+ +| ||.=++++.++..++.+.++.-+... .+.....+.-++..+
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~--------------------~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE--------------------SSAAIAVVLLFLASF 98 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc--------------------chhhhHHHHHHHHHH
Confidence 4677889999996 34 44555666666666666665543211 234556667788899
Q ss_pred hccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHhh
Q 009538 95 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 95 g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~~~~~~ 174 (532)
|.+....++.+.+.|... +++. .++...+..+....+|.+++..++|.+.+..++++.|.+.+++..+.++..+..
T Consensus 99 g~a~~DV~aDa~vvE~~~-~~p~---~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 99 GYAFADVAADALVVELAR-REPE---SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHhhhHHHHHHhh-cCCc---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 999999999999999743 3322 256788899999999999999999999999999999999887666555444443
Q ss_pred cc
Q 009538 175 SR 176 (532)
Q Consensus 175 ~~ 176 (532)
.+
T Consensus 175 ~~ 176 (433)
T PF03092_consen 175 LE 176 (433)
T ss_pred hh
Confidence 33
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=104.55 Aligned_cols=145 Identities=9% Similarity=0.005 Sum_probs=116.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++.+++|++.||. ++++.+..+.++.+++.++..+++ +
T Consensus 257 ~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------------------------~ 311 (417)
T PRK10489 257 GAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------------------------M 311 (417)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc------------------------h
Confidence 456788889999999999999999999995 888899988888888887776653 4
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...+.++.++.|++.+...+...+++.|.+|+ +.|++.+++++...++|..+||.++|++.+..|++..|++.+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~ 385 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPD------EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASG 385 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHH
Confidence 55677788889999988888788888888763 334668999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHhhcce
Q 009538 162 FMMFLSCAMFFLGSRL 177 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~~ 177 (532)
...++..++.+...++
T Consensus 386 ~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 386 FGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6555444444443343
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-08 Score=100.83 Aligned_cols=141 Identities=13% Similarity=-0.064 Sum_probs=108.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHH-HHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL-SLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++.+.+++.+.+.++..++.++.|+++||+ |||+.+ .+..+..++..+. ..+.
T Consensus 239 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l~~~~~------------------------ 292 (390)
T PRK03545 239 SENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLLLPAAN------------------------ 292 (390)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHHHHHhc------------------------
Confidence 456778888889999999999999999996 988654 4444444443333 2322
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...+.+..++.|++.+...+.....+.+..|+ .++++++.+....++|..+||.++|++.+++|++..|++.
T Consensus 293 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~ 365 (390)
T PRK03545 293 SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVG 365 (390)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 456677788899999888878777777776431 2245788888889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhc
Q 009538 161 AFMMFLSCAMFFLGS 175 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (532)
++..+++++..+...
T Consensus 366 ~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 366 AALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888777777665544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.80 E-value=6e-08 Score=102.61 Aligned_cols=155 Identities=13% Similarity=-0.002 Sum_probs=107.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+++...+.++..++.+++|+++||+ |||+.+.++.++..++.++.++...... .+ .| +..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~-------~~~~ 382 (481)
T TIGR00879 317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-TG-----SS-------KSSG 382 (481)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-CC-----cc-------cchh
Confidence 345567788888888999999999999996 9999999998888888877774221000 00 00 0002
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...+....++.+.......+....++.|.+|+ +.+++.++..+...++|.+++|.+.+++.++.+|++.|++.+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~ 456 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL------SLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG 456 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence 22233333333333333457677778998874 234568999999999999999999999998899999999887
Q ss_pred HHHHHHHHHHHhhcc
Q 009538 162 FMMFLSCAMFFLGSR 176 (532)
Q Consensus 162 ~~~~l~~~~~~~~~~ 176 (532)
++.+++.+..+...|
T Consensus 457 ~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 457 GLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHheecc
Confidence 776666555444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.6e-08 Score=105.08 Aligned_cols=142 Identities=10% Similarity=-0.056 Sum_probs=100.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|..++++..+.+.++..++.+++|+++||+ |||+.+.....+..++..+..+... .+
T Consensus 292 s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 348 (467)
T PRK09556 292 SKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQHA----------------------TS 348 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHhc----------------------Cc
Confidence 567788888899999999999999999996 9999887765555544333333210 13
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhH-HHHHHHHhhhhccc-----------
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-AMMISLTVIVYVQS----------- 149 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~-G~~~g~~~~g~i~~----------- 149 (532)
...+++.+++.|+..............|.+|+ +.++++.++.....++ |..++|.+.|++.+
T Consensus 349 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~------~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~ 422 (467)
T PRK09556 349 EYMYLASLFALGFLVFGPQLLIGVAAVGFVPK------KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY 422 (467)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch------hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence 44566777777765433222233556688764 3346688888888886 77999999999988
Q ss_pred -cccchhhhHHHHHHHHHHHHHHH
Q 009538 150 -DVSWAWGLGIPAFMMFLSCAMFF 172 (532)
Q Consensus 150 -~~gw~~~F~v~~~~~~l~~~~~~ 172 (532)
..+|+..|++..+..+++.+..+
T Consensus 423 ~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 423 TLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccChHHHHHHHHHHHHHHHHHHH
Confidence 57899999987777666655443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-08 Score=101.28 Aligned_cols=138 Identities=9% Similarity=-0.074 Sum_probs=106.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.+...++.++..+.+ +
T Consensus 253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 307 (406)
T PRK11551 253 SRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAAP------------------------S 307 (406)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhcC------------------------c
Confidence 456778888899999999999999999996 999999987777766666555542 3
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F~v~ 160 (532)
...+.+.-++.|++.+...+...++..|.+|++ .|++.+++.+....+|.++||.++|++.++. +|...|++.
T Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~ 381 (406)
T PRK11551 308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ------VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGAS 381 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh------hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHH
Confidence 445666777888888888888888999988752 2356899999999999999999999988754 556666666
Q ss_pred HHHHHHHHHH
Q 009538 161 AFMMFLSCAM 170 (532)
Q Consensus 161 ~~~~~l~~~~ 170 (532)
.+..+++.+.
T Consensus 382 ~~~~~~~~~~ 391 (406)
T PRK11551 382 IPVILVAALA 391 (406)
T ss_pred HHHHHHHHHH
Confidence 5555444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-06 Score=83.74 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=50.9
Q ss_pred HHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009538 410 SLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 466 (532)
Q Consensus 410 ~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~ 466 (532)
.+++...+.....+-+|..+.+|++..+...|++++....++.++|.+.+.+.+.++
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 556777777777888999999999999999999999999999999999999988764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=102.31 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=106.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
|..+++++.+.+.++..++.+++|+++||+ |||+.+.....+..++..+...++ +
T Consensus 239 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~~------------------------~ 293 (394)
T PRK03699 239 SLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVNTD------------------------D 293 (394)
T ss_pred ChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHcC------------------------C
Confidence 567789999999999999999999999995 999999988877766655554443 2
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...+.+..++.|++.+...|...++..+..+. + + +...+......++|..++|.+.|++.+..||+..|++.+
T Consensus 294 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~-~-----~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~ 366 (394)
T PRK03699 294 PSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A-S-----PKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTAN 366 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C-C-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhH
Confidence 33455667888888888888777777776542 1 1 234677778889999999999999999999999999877
Q ss_pred HHHHHHHHH
Q 009538 162 FMMFLSCAM 170 (532)
Q Consensus 162 ~~~~l~~~~ 170 (532)
+..+++.+.
T Consensus 367 ~~~~~~~~~ 375 (394)
T PRK03699 367 GLYAVVFVM 375 (394)
T ss_pred HHHHHHHHH
Confidence 766655443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=87.30 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=95.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..|.+.+...-.....+..++.|.++||+ ||||.-+.-+++++++.++--. ++
T Consensus 67 ~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-------------------------~~ 120 (354)
T PF05631_consen 67 SEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-------------------------SN 120 (354)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-------------------------cc
Confidence 345666677777777888999999999996 9999999888888888765433 26
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHh-HHHHHHHHhhhhccccccc--hhhhH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT-FAMMISLTVIVYVQSDVSW--AWGLG 158 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~-~G~~~g~~~~g~i~~~~gw--~~~F~ 158 (532)
+..++++|++.|++......+=.+.+.....+++-++ +.++..++...+..| +-++++.+++-++.+..+. .++|.
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~ 199 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFD 199 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHH
Confidence 8899999999999999988877776655433222111 222333332221222 2233333455556655554 78999
Q ss_pred HHHHHHHHHHHHH
Q 009538 159 IPAFMMFLSCAMF 171 (532)
Q Consensus 159 v~~~~~~l~~~~~ 171 (532)
...++..++.++.
T Consensus 200 ~a~~~l~~~~~~I 212 (354)
T PF05631_consen 200 AAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 8888766665543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-08 Score=99.80 Aligned_cols=145 Identities=14% Similarity=0.035 Sum_probs=108.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+++.+.+.+.++..++.+.+|+++||+ |||+.+.++..+..++.++....+. +
T Consensus 238 s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------~ 293 (393)
T PRK09705 238 SAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGFCGFIWLPL-----------------------Q 293 (393)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHccc-----------------------h
Confidence 567788999999999999999999999995 9999999988888887766543321 1
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v~ 160 (532)
...+ .-++.|++.+...|.......+.++++ +.+++.++..+...+++..+||.+.|++.+..| |+..|.+.
T Consensus 294 ~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~-----~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~ 366 (393)
T PRK09705 294 LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP-----AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFH 366 (393)
T ss_pred HHHH--HHHHHHHhccchHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 1112 224568888888887777777776532 234668999999999999999999999998775 78888887
Q ss_pred HHHHHHHHHHHHhhcce
Q 009538 161 AFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (532)
.+..++..+..+...|+
T Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 367 ALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 76655554444444333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=99.95 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=107.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhcc-ccchHHHHHHH--HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTY-FGRYKTLGFAS--VASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~-~Grr~~l~~~~--~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
++.+++.+.+.+.++..++.+++|+++||. +++|+...++. ++.+++.+++..+.
T Consensus 274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---------------------- 331 (455)
T TIGR00892 274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG---------------------- 331 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 566788899999999999999999999973 13444444433 33344444554442
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F 157 (532)
+++.+++.+++.|++.+...++..+++.|.+|++ .+++.++++....++|.++||.++|++.+.. +|++.|
T Consensus 332 --~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f 403 (455)
T TIGR00892 332 --DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF 403 (455)
T ss_pred --hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence 5667888999999999999999999999988742 3356899999999999999999999998877 599999
Q ss_pred HHHHHHHHHHHHH
Q 009538 158 GIPAFMMFLSCAM 170 (532)
Q Consensus 158 ~v~~~~~~l~~~~ 170 (532)
++.++..+++.+.
T Consensus 404 ~~~~~~~li~~~~ 416 (455)
T TIGR00892 404 YASGSIVVSAGLF 416 (455)
T ss_pred HHhhHHHHHHHHH
Confidence 9988876665553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.9e-08 Score=98.32 Aligned_cols=134 Identities=13% Similarity=-0.011 Sum_probs=99.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLV--LSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il--~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
+..+.+.+...+.++..++.+++|+++||+ |||+.+..+..+..+..+. ..+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 309 (394)
T TIGR00883 253 SANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMALLDS---------------------- 309 (394)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHhcC----------------------
Confidence 456677888888899999999999999996 9999888665555444322 222210
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhcccccc-chhhh
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVS-WAWGL 157 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F 157 (532)
.+...+++..++.|++.+...+...+++.|.+|+++ |++.++. +.....+|..++|.++|++.++.| |++.+
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 310 GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 135566778888999998899999999999987532 2335665 445567899999999999999888 88877
Q ss_pred HHHHHHH
Q 009538 158 GIPAFMM 164 (532)
Q Consensus 158 ~v~~~~~ 164 (532)
+..++..
T Consensus 384 ~~~~~~~ 390 (394)
T TIGR00883 384 YYLAALA 390 (394)
T ss_pred HHHHHHH
Confidence 7655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-05 Score=82.39 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 009538 10 INIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGL 89 (532)
Q Consensus 10 ~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 89 (532)
.++-+....+.+++++.+.|.. |.|..+.++...+..-.+..-+- |-+.++++-
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~yfss 109 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHHHHH
Confidence 4556667788999999999995 99999999999998877766654 456799999
Q ss_pred HHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhh
Q 009538 90 GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 146 (532)
Q Consensus 90 ~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~ 146 (532)
.+.|+|.+....---.|+++..++ +.+.+..++.......+.++|.+.-..
T Consensus 110 allG~Gaallw~GqG~ylt~~st~------~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNSTR------ETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred HHhhhhHHheecccceehhhcCCh------hhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 999999999888888888887442 334556777777777777777554333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=96.78 Aligned_cols=144 Identities=12% Similarity=0.009 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
..+....+.+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+ ..+. ..
T Consensus 308 ~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~-------------------~~~~-~~ 366 (479)
T PRK10077 308 ALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------------------APGI-VA 366 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC-------------------cccH-HH
Confidence 34455556677788999999999995 999999999999999988876542100 0111 22
Q ss_pred HHHHHHHHHhccc-cccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhh------hccccccchhhhH
Q 009538 86 FTGLGLMVIGAGG-IRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV------YVQSDVSWAWGLG 158 (532)
Q Consensus 86 ~~~r~l~G~g~g~-~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g------~i~~~~gw~~~F~ 158 (532)
..+.++.+.+.+. ..|+...++.|.+|+ +.|+.++++.+...++|..+++.+.+ ++.+..+|++.|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 440 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW 440 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCCh------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHH
Confidence 3334444444433 347788999999874 33466888888888888888865554 4446789999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 009538 159 IPAFMMFLSCAMFFLGSR 176 (532)
Q Consensus 159 v~~~~~~l~~~~~~~~~~ 176 (532)
+.++..++..+..+...|
T Consensus 441 ~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 441 IYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 877765555554444333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=97.79 Aligned_cols=128 Identities=14% Similarity=0.065 Sum_probs=99.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++..+..+..+...... .+
T Consensus 272 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 327 (405)
T TIGR00891 272 SPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG-----------------------AN 327 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC-----------------------Cc
Confidence 567788899999999999999999999995 999999988776543332221111 13
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI 159 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v 159 (532)
.+.+.++.++.++..+...+..+.++.|.+|+ +.+++.+++.+...++|..+||.++|++.++.| |+..|..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 328 VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT------DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred hHHHHHHHHHHHHHHccchhhHHHHHhhhCCc------chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 45666677777777777778888899998764 233568999999999999999999999999888 8877665
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=95.83 Aligned_cols=135 Identities=10% Similarity=-0.020 Sum_probs=111.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+...++..++.+++|++.||+ |+|+.+.++.+...+..++.++++ +
T Consensus 238 s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~------------------------~ 292 (382)
T TIGR00902 238 SASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIGAIE------------------------A 292 (382)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHHhHh------------------------h
Confidence 566778888888888888999999999996 999999999999999999998874 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhH-HHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~-~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
.+.+++.++++|+..|...+....++.+. |++ .+++..+++. ....+|.++||.++|++.+++|+ ..|++.
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~------~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~ 364 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS------EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM 364 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 67788899999999999999999999986 532 2245677765 46779999999999999999986 667766
Q ss_pred HHHHHHHHH
Q 009538 161 AFMMFLSCA 169 (532)
Q Consensus 161 ~~~~~l~~~ 169 (532)
+...+++++
T Consensus 365 ~~~~~~~~~ 373 (382)
T TIGR00902 365 AIIAAAAFF 373 (382)
T ss_pred HHHHHHHHH
Confidence 665555543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=100.16 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhH
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQL 82 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (532)
+.+.+++...+.++..++.+++|+++||+ |||+++.++.++.+++.++..+.. .+.
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 311 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFFAG-----------------------SNL 311 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcc-----------------------hhH
Confidence 34556777778888889999999999996 999999999999998888776642 144
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCC-CcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccch
Q 009538 83 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 154 (532)
Q Consensus 83 ~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~-~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~ 154 (532)
..+++..++.|++.+...+...++++|..+.++. .+++..+..++++.+...+|..+|+.+.|++.+..||.
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5677788889999999999999999998654321 12234577899999999999999999999988777763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=95.60 Aligned_cols=143 Identities=13% Similarity=0.014 Sum_probs=102.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-FASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~-~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+..+.+++.+.+.++..++.++.|+++||+ |||+.+. .+.....++.+.+....... .+
T Consensus 255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~-------------------~~ 314 (402)
T TIGR00897 255 STSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFTLALYYIPQHF-------------------GH 314 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHcc-------------------CC
Confidence 456677888888999999999999999995 9998764 33344444444433322100 02
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...+++..++.|++.+...|. ...+.|. +|+ .+++.+++++...++|..+||.+++++.+.+||+..|++.
T Consensus 315 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~------~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~ 386 (402)
T TIGR00897 315 SFAVALIIAIALGIFLAGYVPL-AAVFPTL-APK------HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF 386 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-Ccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3556677888888888776654 4555664 321 2356899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 009538 161 AFMMFLSCAMFF 172 (532)
Q Consensus 161 ~~~~~l~~~~~~ 172 (532)
++..+++.++.+
T Consensus 387 a~~~~i~~~~~~ 398 (402)
T TIGR00897 387 AALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHH
Confidence 877666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-07 Score=93.14 Aligned_cols=145 Identities=17% Similarity=0.072 Sum_probs=96.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKT-LGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~-l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+..+.+++.+.+.++..++.+++|+++||+ |||+. +........++.++.+....... ...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 310 (399)
T TIGR00893 249 SILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLLMFATN-----------------YVN 310 (399)
T ss_pred cHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHhc-----------------cch
Confidence 456778888889999999999999999996 99962 11111122222111111100000 001
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v 159 (532)
+....+....+.+++.+ ..|....++.|.+|+ +.|++.++++....++|..++|.+.|++.+..| |++.|++
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 383 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPG------NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV 383 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh------hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence 22333333444444444 788899999998874 234568999999999999999999999999888 9999998
Q ss_pred HHHHHHHHHHHH
Q 009538 160 PAFMMFLSCAMF 171 (532)
Q Consensus 160 ~~~~~~l~~~~~ 171 (532)
.++..+++.+..
T Consensus 384 ~~~~~~~~~~~~ 395 (399)
T TIGR00893 384 VAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHH
Confidence 877766655544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=94.23 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 009538 8 TLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFT 87 (532)
Q Consensus 8 ~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (532)
.+...+.....++.+++|+++||+ ||||++..+.++..++.+.+....... .+...+++
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 348 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFFMALEAQ--------------------SIFWIVFF 348 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHcC--------------------ChHHHHHH
Confidence 344445556677888999999996 999999988777666554443321000 12334455
Q ss_pred HHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhH-HHHhHHHHHHHHhhhhcccc--ccchhhhHHHHHHH
Q 009538 88 GLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSD--VSWAWGLGIPAFMM 164 (532)
Q Consensus 88 ~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~-~~~~~G~~~g~~~~g~i~~~--~gw~~~F~v~~~~~ 164 (532)
..++.+++.+...+...++++|.+|++ .|.+..++-+ .+..+|..++|.+.+++.+. .+|+..|...++..
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 667778888888888889999998752 2334555533 34558889999999998763 35888887766666
Q ss_pred HHHHHHHHh
Q 009538 165 FLSCAMFFL 173 (532)
Q Consensus 165 ~l~~~~~~~ 173 (532)
+++.+..+.
T Consensus 423 ~i~~v~~~~ 431 (438)
T PRK09952 423 LISAMTALL 431 (438)
T ss_pred HHHHHHHHH
Confidence 666555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=89.51 Aligned_cols=145 Identities=18% Similarity=0.114 Sum_probs=114.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|.+..+++.-.|.++..++.+++|+++|| +.|+++.....+..+..+...+..+
T Consensus 244 ~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~----------------------- 298 (394)
T COG2814 244 FSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGA----------------------- 298 (394)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcc-----------------------
Confidence 366788999999999999999999999999 8999999998888888888777652
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+....++.-++-|++.+...+.-..-+++.. | +......+++....|+|..+|..+||.+.+++|+....++.
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p------~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~ 371 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGLQTRLARLA-P------DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVG 371 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 3445666666677777766555555555522 2 12235789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcce
Q 009538 161 AFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (532)
+++.+++.++.+...++
T Consensus 372 a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 372 AALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99888887766554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-06 Score=87.64 Aligned_cols=140 Identities=9% Similarity=0.090 Sum_probs=101.4
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..++.++.+++ .||+++| +.+..+.++..++.+.....
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 90 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPL----SDRYGRR-------PVLLLGLFIFALSSLGLALS---------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhH----HHhcCCh-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 33444555556666665444 6676655 56777777777776665543
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
.+.+.++...++.+++.+...+...+++.|.+|++.|++.+++.+....+|..+++.+.+.+.+..
T Consensus 91 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------ 156 (385)
T TIGR00710 91 --NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------------ 156 (385)
T ss_pred --ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------
Confidence 256667777888999999999999999999999999999999999999999999999998876532
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 508 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~ 508 (532)
++...|+..+++.++..+..+...++.
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (385)
T TIGR00710 157 ----SWHAIFAFLSLAGILLSALIFFILPET 183 (385)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 234566666666666655555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=89.09 Aligned_cols=139 Identities=11% Similarity=0.022 Sum_probs=99.0
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.+.....++..++.++.+++ .||+++| +.+.+++++.+++.+.....
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 108 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIV----SDRSNAR-------YFMGIGLIATGIINILFGFS---------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HhhcCCc-------hhHHHHHHHHHHHHHHHHHH----------------------
Confidence 34444555666666665544 7776665 56777888877777666554
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
.+.+.++...++.+++.+...+....++.+.+|++.|++++++.+....+|..+++.+.+.+.+..
T Consensus 109 --~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------ 174 (434)
T PRK11663 109 --SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY------------ 174 (434)
T ss_pred --hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------
Confidence 245666666777888888888888999999999999999999999999999999999998886532
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++.+.|++.+++.++..+...+..++
T Consensus 175 ----gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 175 ----GWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 24567766666655554444433343
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-08 Score=98.77 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=118.6
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
++++....+..+++.|+.+.+ .+|+.|+ +.+.+|.++.+++.+..+...
T Consensus 71 Gll~~vf~v~~~i~sPl~gyL----adryNR~-------~v~~vG~~iW~~Av~~~~fs~-------------------- 119 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYL----ADRYNRK-------RVIAVGIFIWTLAVFASGFSN-------------------- 119 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHH----HhhcCcc-------eEEeeHHHHHHHHHHHHHHHH--------------------
Confidence 345555556666667775554 5555544 788999999999998888752
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
+.|.+++.=.+.|+||+...|...++++|.+|+..|+++.++++++..+|..+|..+...+.+... .
T Consensus 120 ----~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~---- 186 (493)
T KOG1330|consen 120 ----HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----W---- 186 (493)
T ss_pred ----HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----c----
Confidence 577777788999999999999999999999999999999999999999999999888777765431 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcc
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 518 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~ 518 (532)
..+.|...++++++..+...++.++.+++..++.+.
T Consensus 187 ------Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 187 ------WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred ------eEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 245788889999998888888777766555444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.2e-07 Score=94.62 Aligned_cols=134 Identities=9% Similarity=0.035 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHH
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 84 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (532)
..+.+.+...+...++.+..|++.||+ |||+.+.++.++++++..+...+. +.+.
T Consensus 255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~~~------------------------~~~~ 309 (396)
T TIGR00882 255 VFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSFAT------------------------TALE 309 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhcC------------------------ChHH
Confidence 345566666667777889999999995 999999999999999887766653 4556
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhccccccchhhhHHHHHH
Q 009538 85 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM 163 (532)
Q Consensus 85 l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~ 163 (532)
+++.++++|++.+........+..+.+++ +.+++..+. +.....+|..+++.++|++.+..||+.+|.+.++.
T Consensus 310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 310 VVILKMLHAFEVPFLLVGCFKYITSQFDV------RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc------ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 78889999998766655555566665442 122344544 56789999999999999999999999999997776
Q ss_pred HHHHHH
Q 009538 164 MFLSCA 169 (532)
Q Consensus 164 ~~l~~~ 169 (532)
.++..+
T Consensus 384 ~~i~~~ 389 (396)
T TIGR00882 384 VLLFTL 389 (396)
T ss_pred HHHHHH
Confidence 655544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=74.93 Aligned_cols=130 Identities=21% Similarity=0.330 Sum_probs=91.0
Q ss_pred hhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH
Q 009538 324 MLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL 403 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (532)
.++.++..++.+++ .||+++| +.+..+..+..++.+..... .+.+
T Consensus 8 ~~~~~~~~~~~g~~----~d~~g~~-------~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 52 (141)
T TIGR00880 8 ALGQLIYSPLSGLL----TDRFGRK-------PVLLVGLFIFVLSTAMFALS------------------------SNIT 52 (141)
T ss_pred hhHHHHHHhhHHHH----Hhhcchh-------HHHHHHHHHHHHHHHHHHHh------------------------ccHH
Confidence 34445555554443 5555544 45566666666665554432 2455
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhH
Q 009538 404 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRL 483 (532)
Q Consensus 404 ~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (532)
......++.+++.+...+..+.+..|.+|++.|++.+++.+....++..+++.+.+.+.+.. ++
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~ 116 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GW 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------ch
Confidence 66667788899888888888999999999999999999999999999999999999886532 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 009538 484 DYFYYLVAALGLLNFGFFLLC 504 (532)
Q Consensus 484 ~~~~~~~~~~~vv~~~~~~~~ 504 (532)
.+.|+..+.+.++..+.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 117 RAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456666666666555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.6e-07 Score=95.08 Aligned_cols=146 Identities=9% Similarity=-0.028 Sum_probs=101.2
Q ss_pred chhhhHHHHHHH-HHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 2 KSITATTLINIF-SGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL-TAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 2 ~~~~~~~i~~~~-~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~-a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
|+.+.+++...+ .++..++.+++|+++||+ ||||.+.++.++..++.++... +.. .
T Consensus 256 s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~~-~-------------------- 313 (491)
T PRK11010 256 DAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSIT-D-------------------- 313 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc-c--------------------
Confidence 566777776544 568889999999999996 9999888777666665544322 110 0
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
++...+...-+++.+..|...+...++..+..+++. .++.++..+...++|..+++.+.|++.+.+||+..|.+
T Consensus 314 ~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~ 387 (491)
T PRK11010 314 KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLF 387 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 133344445555454445444555666666654322 23468888888999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 009538 160 PAFMMFLSCAMFFLGS 175 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~ 175 (532)
..+..+++.+..+..+
T Consensus 388 ~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 388 SVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777766655543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=89.25 Aligned_cols=141 Identities=13% Similarity=-0.032 Sum_probs=105.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.++....+..+..++.++.|+++||+ |||+.+.++.++..++.++.++..... ..+
T Consensus 249 ~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~~~ 308 (406)
T PRK15402 249 SSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS-------------------SHA 308 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHcc-------------------ccc
Confidence 455667777777778888999999999996 999999999998888888877753211 124
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
...++++.++.|+|.+...|.......+. ++ +.+++..+.+++...+|..+|+.+++++.+..++....+..+
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~------~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 381 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD------VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNL 381 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc------ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 56678889999999998877666554432 22 233568999999999999999999999988888776666655
Q ss_pred HHHHHHHH
Q 009538 162 FMMFLSCA 169 (532)
Q Consensus 162 ~~~~l~~~ 169 (532)
+..++.++
T Consensus 382 ~~~~~~~~ 389 (406)
T PRK15402 382 ANGLLWLL 389 (406)
T ss_pred HHHHHHHH
Confidence 54444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.1e-07 Score=94.27 Aligned_cols=141 Identities=11% Similarity=-0.022 Sum_probs=88.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccc--hHHH-HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGR--YKTL-GFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Gr--r~~l-~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
+..+++++...+.++..++.+++|+++|| +++ |+.. .....+..++.++..+...
T Consensus 287 s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~~--------------------- 344 (452)
T PRK11273 287 ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNPA--------------------- 344 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 45667778888888888999999999999 454 4332 2222333333333322210
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHH-HHHhhhhccccccchhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI-SLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~-g~~~~g~i~~~~gw~~~F 157 (532)
.+...+.+..++.|.+.....+....+..|.+|+ +.+++.+++.+...++|..+ ||.+.|++.++.||++.|
T Consensus 345 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f 417 (452)
T PRK11273 345 -GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 417 (452)
T ss_pred -cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh------hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence 1233344445555554322222233455677764 23356788888888888654 799999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009538 158 GIPAFMMFLSCAMF 171 (532)
Q Consensus 158 ~v~~~~~~l~~~~~ 171 (532)
++.+...+++.+..
T Consensus 418 ~~~~~~~~~~~~~~ 431 (452)
T PRK11273 418 MVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 98777656554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=91.14 Aligned_cols=126 Identities=14% Similarity=0.003 Sum_probs=82.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHH-HHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLV-LSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+..+.+++...+.++..++.+.+|+++||+ ||||.+..+.....+..+. ...... .+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 329 (434)
T PRK15075 272 SAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLVA---------------------AP 329 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHc---------------------CC
Confidence 455667777788888889999999999996 9999988765544332211 111110 01
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHh-HHHHHHHHhhhhccccccchh
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFT-FAMMISLTVIVYVQSDVSWAW 155 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~-~G~~~g~~~~g~i~~~~gw~~ 155 (532)
++..+....++.+++.|...+....++.|.+|++. |++.+++.+...+ ++..++|.+.+++.++.|+++
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 23334444555666777767767788899887532 2345666444333 457779999999999888653
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=89.63 Aligned_cols=138 Identities=10% Similarity=0.027 Sum_probs=95.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+.+.++..++.++.|++.||+ |+|+.+..+..+.+++.++.....+ +
T Consensus 233 s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------~ 288 (382)
T PRK10091 233 SETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFGG-----------------------M 288 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHHh-----------------------h
Confidence 566788889999999999999999999996 9999999999888888766554321 2
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-cccchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~-~~gw~~~F~v~ 160 (532)
....++..++.++|.+...+.......+..++ ++ ..+ .+......++|..+||.++|++.+ +.+|++.|.+.
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~--~~~--~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~ 361 (382)
T PRK10091 289 KTASLIFAFICCAGLFALSAPLQILLLQNAKG---GE--LLG--AAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPA 361 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc---ch--HHH--HHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHH
Confidence 23445555566666554444333333333332 11 112 223356788999999999999887 47899999987
Q ss_pred HHHHHHHHHH
Q 009538 161 AFMMFLSCAM 170 (532)
Q Consensus 161 ~~~~~l~~~~ 170 (532)
+....+....
T Consensus 362 ~~~~~~~~~~ 371 (382)
T PRK10091 362 ALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHH
Confidence 7655544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-06 Score=84.43 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=100.3
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......+...+..++.+++ .||+++| +.+..+.++.+++.+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~l~~~~~~~~~~~~~~~~~---------------------- 82 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYL----SDRFGRR-------RVLIIGLLLFALGSLLLAFA---------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHS-HH-------HHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHcCCe-------eeEeehhhhhhhHHHHhhhh----------------------
Confidence 34445555666666664444 6666555 67777888887774444432
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
.+.+.++...++.|++.+...+....++.|.+|++.|++.+++......+|..+++.+.+.+.+..
T Consensus 83 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------------ 148 (352)
T PF07690_consen 83 --SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------------ 148 (352)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------------
T ss_pred --hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------------
Confidence 244577888899999999999999999999999999999999999999999999999999887532
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCA 505 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~ 505 (532)
++.+.|++.+++.++..+....+.
T Consensus 149 ----~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 149 ----GWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp ----HHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ----ccccccccccchhhhhhhhHhhhh
Confidence 234467777777777766433333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6e-06 Score=86.02 Aligned_cols=137 Identities=9% Similarity=0.097 Sum_probs=92.2
Q ss_pred hhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 009538 319 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 398 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (532)
......+..++..++.+++ .||+++| +.+..+.++..++++......
T Consensus 48 ~~s~~~~~~~~~~~~~G~l----~Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~---------------------- 94 (395)
T PRK10054 48 AMTIALTIGVVFSLGFGIL----ADKFDKK-------RYMLLAITAFASGFIAIPLVN---------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhhcCcc-------hhHHHHHHHHHHHHHHHHHHh----------------------
Confidence 3344445555566665554 7776665 466677777777766655541
Q ss_pred cchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 009538 399 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478 (532)
Q Consensus 399 ~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (532)
+.+..+...++.+.+.+...+....+..|..|++.|+++.|+.+....+|..+++.+.+.+.+. +
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------g------ 159 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------S------ 159 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c------
Confidence 3444444555666666667777888999999999999999999999999999999999987631 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 479 ~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
+...|+..+++.++..+...+..++
T Consensus 160 ----~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 160 ----INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred ----cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 2346666666666655444443343
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=88.73 Aligned_cols=133 Identities=9% Similarity=0.009 Sum_probs=102.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+...++..+..++.|++.||+ |+|+.+.++.+...++.++.+.++ +
T Consensus 238 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~------------------------~ 292 (382)
T PRK11128 238 SASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWGLMGSTT------------------------A 292 (382)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhh------------------------h
Confidence 455677787877788888899999999996 999999999999999888777664 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhH-HHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~-~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
.+.+++..++.|++.+...+....++.+. ++++ +++..+.+. ....+|..+||.++|++.+.+|+ ..|+..
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~ 364 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVM 364 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 66788899999999999888888887775 3211 234566654 55677889999999999998887 456655
Q ss_pred HHHHHHH
Q 009538 161 AFMMFLS 167 (532)
Q Consensus 161 ~~~~~l~ 167 (532)
++..+++
T Consensus 365 ~~~~~~~ 371 (382)
T PRK11128 365 ALVALPA 371 (382)
T ss_pred HHHHHHH
Confidence 5444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=89.51 Aligned_cols=144 Identities=13% Similarity=-0.035 Sum_probs=101.3
Q ss_pred chhhhHHHHHHHHH-HHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~-~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++++.+++...+.. ...++.+++|++.||+ |+||.+..+..+.++..++........ . ..
T Consensus 241 s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~~-~-----------------~~ 301 (390)
T TIGR02718 241 PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFAQAAFW-L-----------------AP 301 (390)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHcc-c-----------------CC
Confidence 56777888777764 5667889999999995 999999988777644433332211100 0 01
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+...++....+.+++.|...+.....+.+..+++ +.+++.++..+...++|..+||.++|++.++.||+..|.+.
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 302 GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG-----DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSG 376 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 2334455556667777777777777777765431 23356789999999999999999999999999999999987
Q ss_pred HHHHHHHHH
Q 009538 161 AFMMFLSCA 169 (532)
Q Consensus 161 ~~~~~l~~~ 169 (532)
++..+++.+
T Consensus 377 ~~~~l~a~~ 385 (390)
T TIGR02718 377 TVLAVLAIL 385 (390)
T ss_pred HHHHHHHHH
Confidence 776555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.9e-06 Score=86.09 Aligned_cols=145 Identities=12% Similarity=0.014 Sum_probs=102.2
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
.....++..++.+..++ +.||+++| +.+..++++.+++.+..+..
T Consensus 49 ~s~~~~~~~~~~~~~g~----l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~------------------------ 93 (412)
T TIGR02332 49 ATLFYAAYVICGIPSNI----MLAIIGAR-------RWIAGIMVLWGIASTATMFA------------------------ 93 (412)
T ss_pred HHHHHHHHHHHHhhHHH----HHHHhChH-------HHHHHHHHHHHHHHHHHHHh------------------------
Confidence 33444445555555333 46776666 57778888888877776654
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (532)
.+.+++....++.|++++...+....++.|.+|++.|++.+++++....+|..+++.+.+.+.+..... +
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------~ 163 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM----------A 163 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------C
Confidence 356777788889999999999998899999999999999999999999999999999988876421000 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009538 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYK 509 (532)
Q Consensus 480 ~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~ 509 (532)
..+..+.|++.++..++..+..+++.++.+
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 012356777766666665555555555543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=91.00 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=113.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccch--HHHHHHHHHHHHHHHHHHH--HhhcccCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRY--KTLGFASVASFLGMLVLSL--TAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr--~~l~~~~~~~~ig~il~~~--a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
++.+...+.-+-.+...++++++|++.||+ |.| ++++++++++.+-.+...+ -.+.- |
T Consensus 315 s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~----------------g- 376 (477)
T PF11700_consen 315 STTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLFGFWPSFF----------------G- 376 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHHHhhhccc----------------C-
Confidence 455666666667777889999999999995 999 9999888888555444333 11100 0
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhh
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWG 156 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~ 156 (532)
.++-+.+++.-++.|+..|..++..-++.++..|++++ +.++++|.+..-..+.+||++.|.+.+..| -|+.
T Consensus 377 -~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g 449 (477)
T PF11700_consen 377 -LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYG 449 (477)
T ss_pred -cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 02455677888899999999999999999999886432 358999999999999999999999988765 8898
Q ss_pred hHHHHHHHHHHHHHHHh
Q 009538 157 LGIPAFMMFLSCAMFFL 173 (532)
Q Consensus 157 F~v~~~~~~l~~~~~~~ 173 (532)
|..-.++.++++++++.
T Consensus 450 ~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 450 FLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88777777777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=91.78 Aligned_cols=124 Identities=12% Similarity=-0.039 Sum_probs=95.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++...+.++..++.++.|+++||+ |||+++..+..+..++.++..+... ..+
T Consensus 295 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 352 (471)
T PRK10504 295 SPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLVAL---------------------LGW 352 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhccc---------------------ccc
Confidence 345667777777777888889999999996 9999999999988888777665421 012
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccc
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 153 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw 153 (532)
...+.+.-+++|++.+...+....+..+.+|++ .++..++.+++...+|..+|+.++|.+.+..|+
T Consensus 353 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 353 YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455677888998888888888888887642 334579999999999999999999988665555
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=86.77 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=100.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+...+.|..++.++.+.++++.||+ |+||.+.++..+.+++.++....++
T Consensus 176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~~~~l~~~~~~------------------------ 230 (310)
T TIGR01272 176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVLLSIGAALTHG------------------------ 230 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcCC------------------------
Confidence 567888999999999999999999999995 9999999998888888766655421
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.. ...+-++.|++.+...|...+...+.++++. + ...++. ....+|.+++|.+.|.+.+..|.++.|++..
T Consensus 231 ~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~--~-----~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 231 YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT--S-----QGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--h-----hhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 11 2235558899999999999998888776421 1 123333 5677999999999999999999999998766
Q ss_pred HHH
Q 009538 162 FMM 164 (532)
Q Consensus 162 ~~~ 164 (532)
+..
T Consensus 302 ~~~ 304 (310)
T TIGR01272 302 PCY 304 (310)
T ss_pred HHH
Confidence 543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=83.36 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=96.9
Q ss_pred hhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
....+...++.|+.++ +.||++|| +.+..+.++.+++.+..... .
T Consensus 62 ~~~~~~~~~~~~~~g~----l~Dr~grr-------~~~~~~~~~~~~~~~~~~~~------------------------~ 106 (394)
T PRK10213 62 TVTAFVAMFASLFITQ----TIQATDRR-------YVVILFAVLLTLSCLLVSFA------------------------N 106 (394)
T ss_pred HHHHHHHHHHHHHHHH----HhcccCcH-------HHHHHHHHHHHHHHHHHHHH------------------------C
Confidence 3455555666666444 36666655 67778888887777666543 3
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.++++..-++.|++.+...+....++.|.+|++.|+.++++......+|..+++.+.+.+.+..
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~--------------- 171 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI--------------- 171 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 57777778889999999988999999999999999999999999999999999999999887532
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009538 481 GRLDYFYYLVAALGLLNFGF 500 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~ 500 (532)
++.+.|+..+++.++..+.
T Consensus 172 -gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 172 -GWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred -CHHHHHHHHHHHHHHHHHH
Confidence 2456776666655554433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.5e-06 Score=83.36 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=87.6
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..+..|+.+++ .||+++| +.+..+.++..++.+....... .
T Consensus 38 ~~~~~~~~~~~i~~~~~G~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~-------------------~ 87 (365)
T TIGR00900 38 LAALAGMLPYVVLSPIAGAL----ADRYDRK-------KVMIGADLIRAVLVAVLPFVAL-------------------L 87 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHH----HHhhchh-------HHHHHHHHHHHHHHHHHHHHHH-------------------c
Confidence 34455556666666665554 7776665 5666676666666555554421 0
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
...+.+.+....++.+++.+...+...+++.|.+|++.|++.+++.+....+|..+++.+.+.+.+.
T Consensus 88 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 154 (365)
T TIGR00900 88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT 154 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1136677778888899999999999999999999999999999999999999999999999888653
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=88.08 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=95.9
Q ss_pred chhhhHHHHHHHHH-HHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSG-TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~-~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++.+.+++.+.... +..++.+++|++.||+ |||+.+.++.+...+..+........+ .
T Consensus 243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------------------~ 301 (402)
T PRK11902 243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------------------K 301 (402)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------C
Confidence 45566777665544 5778999999999995 999998888877776655443211101 1
Q ss_pred hHHHHHHHH----HHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhh
Q 009538 81 QLAFLFTGL----GLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 156 (532)
Q Consensus 81 ~~~~l~~~r----~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~ 156 (532)
+.+.+++.- +..|++.+...+....++.+.+|. + ..+.+....++|..+++.++|++.+++||++.
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~ 371 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA----T------QYALLSALASVGRVYVGPTSGYLVEAYGWPGF 371 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----H------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 233344333 456677777788788888887652 1 24555556678887677789999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 009538 157 LGIPAFMMFLSCAMF 171 (532)
Q Consensus 157 F~v~~~~~~l~~~~~ 171 (532)
|.+.++..+++.++.
T Consensus 372 f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 372 YLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888776665544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=88.99 Aligned_cols=129 Identities=14% Similarity=0.024 Sum_probs=89.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+.+.++..++.+++|+++||+ |||+.+..+.++..++.++...... .+
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 320 (426)
T PRK12307 264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ----------------------DN 320 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc----------------------cc
Confidence 445667777888888999999999999995 9999999888777666554443221 11
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
...+....+..+++.....+..+.++.|.+|+ +.+++.+++.+...++|..+||.+.|++.++.|+....++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 321 YLLLGACLFGLMATNVGVGGLVPKFLYDYFPL------EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH------HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 21122222222222233345566778898874 2335679998999999999999999999998887654443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=85.93 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=102.5
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
+......++.....+..+++ .||+++| +.+..+.++..++.+.++..
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l----~D~~Grk-------~~l~~~~~~~~~~~~~~~~a---------------------- 91 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGAL----GDRIGFK-------RLLMLGGTLFGLASLAAAFS---------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhccH-------HHHHHHHHHHHHHHHHHHHc----------------------
Confidence 33444555555666665554 6776665 67788888888887776654
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~-P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
.+.+.++..-++.|+|.+...+.....+.+.+ |++.|++++|+......+|..+++.+.+.+.+..
T Consensus 92 --~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~----------- 158 (495)
T PRK14995 92 --PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF----------- 158 (495)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----------
Confidence 36777788888999999988888777776665 7899999999999999999999999999987643
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++.+.|++...+.++.++..+...++
T Consensus 159 -----gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 159 -----YWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23567777766666666655555444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=87.00 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=105.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKTLGFASVASFLGMLVLSL-TAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~-Grr~~l~~~~~~~~ig~il~~~-a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
+|..++++.++.|-++...+++++||++||+| |||....+.+.+....+++.-. +++
T Consensus 285 ~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~--------------------- 343 (448)
T COG2271 285 FSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN--------------------- 343 (448)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCC---------------------
Confidence 46778999999999999999999999999999 8887766554444444433333 221
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhH-HHHHHHHhhhhccccccchhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~-G~~~g~~~~g~i~~~~gw~~~F 157 (532)
.|+.+..+.-+.+|+-.-+-...+-....|..|+ ...+++.+...++..+ |.+.+...-|++.+.+||...|
T Consensus 344 -~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK------~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~F 416 (448)
T COG2271 344 -GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK------KAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGF 416 (448)
T ss_pred -ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH------hhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchH
Confidence 2566777777777777754445455556675442 2234577777778888 8888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009538 158 GIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~ 174 (532)
.+-.+..+++.+.++..
T Consensus 417 i~~~~~a~l~~lll~~~ 433 (448)
T COG2271 417 IVLSIAALLAILLLLPV 433 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98777666665555444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=84.35 Aligned_cols=129 Identities=14% Similarity=0.008 Sum_probs=93.3
Q ss_pred hhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHH
Q 009538 326 GLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWL 405 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (532)
...+..++.++ +.||+++| +.+..+.++.+++++.+... .+.|++
T Consensus 58 ~~~~~~~~~G~----l~dr~g~k-------~~l~~~~~~~~~~~~~~~~~------------------------~~~~~l 102 (400)
T PRK11646 58 IQQGLGIFGGA----IADRFGAK-------PMIVTGMLMRAAGFATMAIA------------------------HEPWLL 102 (400)
T ss_pred HHHHHHhhhhH----HHHHhCch-------HHHHHHHHHHHHHHHHHHHh------------------------ccHHHH
Confidence 33333455333 36666655 56777888888777766543 256777
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHH
Q 009538 406 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDY 485 (532)
Q Consensus 406 i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (532)
+...++.+++.+...+...+++.+.+|++.|++++|+......+|..+++.+.+.+.+. ++.+
T Consensus 103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~-----------------g~~~ 165 (400)
T PRK11646 103 WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY-----------------DFRL 165 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hHHH
Confidence 77788889999888888899999999999999999999999999999999999988631 2455
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 009538 486 FYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 486 ~~~~~~~~~vv~~~~~~~~~~ 506 (532)
.|+..+++.++..+......+
T Consensus 166 ~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 166 VCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 666666555555444333333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=90.70 Aligned_cols=140 Identities=13% Similarity=0.012 Sum_probs=84.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchH-----HHH--HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYK-----TLG--FASVASFLGMLVLSLTAAISKLHPPDCGNQDSGAC 74 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~-----~l~--~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~ 74 (532)
+..+++.+.+.+.++..++.+++|+++||+ |||+ ... +..++.++..++.....
T Consensus 286 s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~------------------ 346 (476)
T PLN00028 286 SLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLGRAN------------------ 346 (476)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhcccc------------------
Confidence 456788889999999999999999999995 9762 222 22222222222222221
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccch
Q 009538 75 PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 154 (532)
Q Consensus 75 ~~~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~ 154 (532)
+.+...+.-++.+++.+...+...+++.+..| +.++...++.....++|..++|.+.+ .....+|+
T Consensus 347 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~ 412 (476)
T PLN00028 347 ------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-------RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTE 412 (476)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-------hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHh
Confidence 23344445555666655555555555566432 23355677766666666666665543 22345799
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 009538 155 WGLGIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 155 ~~F~v~~~~~~l~~~~~~~~ 174 (532)
..|++.++..+++.++.++.
T Consensus 413 ~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 413 TGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhe
Confidence 99999887777776655544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=83.76 Aligned_cols=138 Identities=16% Similarity=0.129 Sum_probs=97.4
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
.....++..++.|+.+++ .||+++| +.+..+.++..++.......
T Consensus 44 ~~~~~~~~~~~~~~~G~l----~Dr~g~r-------~~l~~~~~~~~i~~~~~~~~------------------------ 88 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKI----ADRSGRK-------PVAIPGAALFIIASLLCSLA------------------------ 88 (392)
T ss_pred HHHHHHHHHHHHHhHhHH----HHHhCCh-------HHHHHHHHHHHHHHHHHHHh------------------------
Confidence 344455556666665554 6776655 56667777777666655543
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (532)
.+.+.++...++.+++.+...+..+.++.|.+|++.|++.+++.+....++..+++.+.+.+.+..
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-------------- 154 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-------------- 154 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------
Confidence 245566667788899888888888999999999999999999999999999999998887765422
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009538 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWY 508 (532)
Q Consensus 480 ~~~~~~~~~~~~~~~vv~~~~~~~~~~~~ 508 (532)
++.+.|++.+++.++..+......++.
T Consensus 155 --g~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (392)
T PRK10473 155 --PWQSLFYTMAAMGILVLLLSLFILKET 181 (392)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 235567777766666665554444543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=90.66 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHH
Q 009538 7 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 86 (532)
Q Consensus 7 ~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (532)
+.+...+.+...++.+++++++||+ |||+.+..+.+..++..+...+.+ ..+...++
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~ 323 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP----------------------PSNVWLIF 323 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC----------------------cchHHHHH
Confidence 3444455566678889999999996 999999998877765444333321 12566678
Q ss_pred HHHHHHHHhccccccccccccccCCCCCCC-CcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccch
Q 009538 87 TGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 154 (532)
Q Consensus 87 ~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~-~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~ 154 (532)
+..++.|+|.+...+...++++|..+.++. .+++.-+..++.+.+...+|..+|+.++|++.+..|+.
T Consensus 324 ~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 324 ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888999999999999999999998763332 23344467788999999999999999999987766663
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=90.48 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=93.5
Q ss_pred HHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 009538 13 FSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLM 92 (532)
Q Consensus 13 ~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 92 (532)
..++..++.++.++++||+ |+|+++.++.+++.++.++..+.+. .+.+.+++..++.
T Consensus 273 ~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~~~~~----------------------~~~~~~~~~~~l~ 329 (448)
T PRK09848 273 NLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFFWVSV----------------------WSLPVALVALAIA 329 (448)
T ss_pred HHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc----------------------hhHHHHHHHHHHH
Confidence 3455677899999999996 9999999999999998887776421 2456677788899
Q ss_pred HHhccccccccccccccCCCCCCC-CcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccc
Q 009538 93 VIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 153 (532)
Q Consensus 93 G~g~g~~~p~~~~~i~d~f~~~~~-~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw 153 (532)
|+|.+...+...++.+|..++++. .+++..+..++.+.+...+|..+|+.+.+.+.+..||
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998764332 2234457788899999999999999998887655554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=89.44 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=102.5
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..++.++.+++ .||+++| +.+..+.++..++.+..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 87 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWL----AKRFGTR-------RLFLISTFAFTLGSLLCGVA---------------------- 87 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHhCc----------------------
Confidence 44455566666666765554 6666655 56777777777776665543
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
.+.+.++...++.|++.+...+..+.++.|.+|++.|+++++++.....+|..+++.+.+.+.+.. +|
T Consensus 88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~w---- 155 (485)
T TIGR00711 88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY------HW---- 155 (485)
T ss_pred --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc------Cc----
Confidence 356777788899999999999999999999999999999999999999999999999998887532 22
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
.+.|+..+.+.++..+...+..++
T Consensus 156 ------~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 156 ------RWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred ------eehhhhhhHHHHHHHHHHHHHcCC
Confidence 346666666666665555554444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=84.05 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=97.3
Q ss_pred hhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchH
Q 009538 323 SMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSG 402 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (532)
..++..++.++. .++.||++|| +.+..+.++.+++.+..... .+.
T Consensus 60 ~~~~~~~~~~~~----G~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~a------------------------~~~ 104 (413)
T PRK15403 60 YLAGGMALQWLL----GPLSDRIGRR-------PVLITGALIFTLACAATLFT------------------------TSM 104 (413)
T ss_pred HHHHHHHHHHhh----hHHHHHcCch-------HHHHHHHHHHHHHHHHHHHc------------------------CCH
Confidence 344445555553 3347777766 56777777777776665543 356
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchh
Q 009538 403 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 482 (532)
Q Consensus 403 ~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (532)
++++..-++.|++++...+..+.+..|.+|++.+++.+++.+....++..+++.+.+.+.+.. +
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------------g 168 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------------H 168 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------C
Confidence 777778888999888767777788889999999999999999999999999998888776432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009538 483 LDYFYYLVAALGLLNFGFFLLCAKWY 508 (532)
Q Consensus 483 ~~~~~~~~~~~~vv~~~~~~~~~~~~ 508 (532)
+.+.|+..+++.++..+..+...++.
T Consensus 169 w~~~f~~~~~~~~i~~~~~~~~lp~~ 194 (413)
T PRK15403 169 WKVLFAIIAVMGLIAFVGLLLAMPET 194 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45677777777777665555444554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=87.08 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=97.2
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..++.++.+++ .||+++| +.+..+.++.+++.++....
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 80 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSV----SDRSNPR-------VFLPIGLILCAIVNLFFGFS---------------------- 80 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHH----HHhhCCe-------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence 33444555555556664444 7777666 46777777777777666654
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGF-LISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~-~~~~~~~~~~~~~~~~~~~~ 476 (532)
.+.+.++...++.+++.+...+..++++.|.+|++.|++++++.+....+|..+++. +.+.+.+.. +
T Consensus 81 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~---- 148 (379)
T TIGR00881 81 --TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY------S---- 148 (379)
T ss_pred --hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC------C----
Confidence 256777778888999999999999999999999999999999999999999999994 544443321 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
..+.|+..+++.++..+..++..++
T Consensus 149 ------~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 149 ------WHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred ------chhHHHHHHHHHHHHHHHHheeeCC
Confidence 2345666666666655555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=81.26 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=97.9
Q ss_pred hhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
....++..++.++.+++ .||+++| +.+..+.++.+++....... .
T Consensus 33 ~~~~~~~~~~~~~~g~l----~d~~g~~-------~~~~~~~~~~~i~~~~~~~~------------------------~ 77 (377)
T PRK11102 33 SAYILGFAIGQLFYGPM----ADSFGRK-------PVILGGTLVFALAAVACALA------------------------Q 77 (377)
T ss_pred HHHHHHHHHHHHhhchH----HhhcCCh-------HHHHHHHHHHHHHHHHHHHH------------------------c
Confidence 34445555556664443 6666555 56777887777777666553 2
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.+.++...++.+++.+...+...+++.|.+|++.|++.+++.+....+|..+++.+.+.+.+..
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------------- 142 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF--------------- 142 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------
Confidence 45566677788899998888888999999999999999999999999999999999988886532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++.+.|+..+++.++..+......++
T Consensus 143 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 143 -SWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 23456666666666665554444444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-06 Score=88.86 Aligned_cols=144 Identities=9% Similarity=-0.061 Sum_probs=88.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHH---HHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGM---LVLSLTAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~---il~~~a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
++.+++++...+.+...++.+++|+++||+ |+++....+.....+.. ++....+.
T Consensus 285 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 342 (438)
T TIGR00712 285 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWMNPA--------------------- 342 (438)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHhcCC---------------------
Confidence 456678888889999999999999999995 76543333333322221 11111100
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHH-HHHHHHhhhhccccccchhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFA-MMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G-~~~g~~~~g~i~~~~gw~~~F 157 (532)
.+.....+..++.|++.....+.......|.+|+ +.++++.++.+...++| .++||.++|++.++.||.+.|
T Consensus 343 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~ 415 (438)
T TIGR00712 343 -GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 415 (438)
T ss_pred -CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh------hheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHH
Confidence 1222333444445554322212222345677664 22345788888777876 578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009538 158 GIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~ 174 (532)
++.+...+++.+..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 416 MVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88776655555544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.2e-06 Score=86.36 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=106.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
...+.+..++.+...++.+++++++||+ ||||++..+.++++++.++..+... .+.+
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 316 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFLGP----------------------GSPW 316 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHHHh----------------------hhHH
Confidence 3456777788888999999999999996 9999999999999999999888741 2678
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCC-cccchhhhhhhhHHHHhHHHHHHHHhhhhccccccch
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTES-GKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 154 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~-~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~ 154 (532)
.+++.-++.|+|.|...+...++++|..+..+.+ +++.-+..++.+.+...+|..+++.+.+.+.+..|+.
T Consensus 317 ~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 317 LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 8999999999999999999999999987644322 3345578999999999999999999988876544443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-06 Score=81.17 Aligned_cols=132 Identities=21% Similarity=0.243 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHH
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 84 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (532)
+.+++.+.+.+...++.++.|.++||+ |||+.+..+...+.++.+++++..+ .+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 96 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN----------------------VGLAL 96 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc----------------------chHHH
Confidence 578899999999999999999999996 9999999998887777777777642 24788
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHH-HHhHHHHHHHHhhhhcccc--ccchhhhHHHH
Q 009538 85 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF-TFTFAMMISLTVIVYVQSD--VSWAWGLGIPA 161 (532)
Q Consensus 85 l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~-~~~~G~~~g~~~~g~i~~~--~gw~~~F~v~~ 161 (532)
+++.|.++|++.|...|...+++.|.+++ . ..++...+.... ...+|..++|.+++.+... .+|++.|.+..
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAA 171 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999764 1 234556777666 5778888888777776643 68999777665
Q ss_pred HHH
Q 009538 162 FMM 164 (532)
Q Consensus 162 ~~~ 164 (532)
...
T Consensus 172 ~~~ 174 (338)
T COG0477 172 LLG 174 (338)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.8e-06 Score=89.55 Aligned_cols=128 Identities=13% Similarity=-0.006 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 009538 12 IFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGL 91 (532)
Q Consensus 12 ~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 91 (532)
.+.+....+.++++++.||+ |||+.+.++.++.+++.++..+.++ .+....++.-++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~~ 419 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAVL 419 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHHH
Confidence 34445567888999999995 9999999999998888887776532 112334455566
Q ss_pred HHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHHH
Q 009538 92 MVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 170 (532)
Q Consensus 92 ~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~~ 170 (532)
.+++.+...+....+..|.+|+ +.|++.+++......+|.+++|.+.+ +. ..++...|++.+...+++.++
T Consensus 420 ~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 420 GKFGITSAFQMVYLYTAELYPT------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHhcccccH------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence 6777777778888999999875 23356789999999999999999988 43 456677777766655554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=85.13 Aligned_cols=143 Identities=10% Similarity=-0.109 Sum_probs=81.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL-TAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+..+.+.+.+.......++.++.|+++||+ |||+.+.++.++..+..+.... .... .
T Consensus 277 s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 334 (432)
T PRK10406 277 HANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQNV---------------------S 334 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHcC---------------------C
Confidence 345667777777777788889999999995 9999888776654443332211 1100 0
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhH-HHHHHHHhhhhccccccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~-G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
+....+..-.+.+++.+...+....+..|.||++ .|++.+++.+...+. .....|.+.+++....+|...++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~------~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~ 408 (432)
T PRK10406 335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ------VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWY 408 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHH
Confidence 1111111112222333334455667889999852 234578877665554 233477777766543335556665
Q ss_pred HHHHHHHHHHHHH
Q 009538 160 PAFMMFLSCAMFF 172 (532)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (532)
.++..+++.+..+
T Consensus 409 ~~~~~~i~~~~~~ 421 (432)
T PRK10406 409 VTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=86.87 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=91.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFG-RYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~G-rr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
|..+.+.+.+.+.++..++.++.|+++|| +| ||+.+.++..+.+++.+++.+..+
T Consensus 230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 285 (355)
T TIGR00896 230 SAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAPM----------------------- 285 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhhh-----------------------
Confidence 45678889999999999999999999999 55 566777888888888877776531
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 152 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g 152 (532)
+. .. ..-++.|+|.|...|...+.+.+..+++ +.++...++.+...++|..+||.+.|++.++.|
T Consensus 286 ~~-~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 HG-LW-AWALVLGLGQGGAFPLALTLIGLRSRQA-----AQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hH-HH-HHHHHHHHhhhhHhHHHHHHHHHhccCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 11 1346789999999998877777654431 223456777788888999999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=84.53 Aligned_cols=128 Identities=14% Similarity=0.052 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.+.+.+...+...++.++.++++||+ |||+++.++.++.+++.+...+....+ +.+...+
T Consensus 268 ~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 327 (473)
T PRK10429 268 FPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVLSCGVLLLMGLAA-------------------PHNALLI 327 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccC-------------------chhHHHH
Confidence 34455555577888999999999996 999999999988887776654421000 1245567
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCC-CCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccc
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNT-ESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 153 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~-~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw 153 (532)
++.-++.|++.+...+...++++|..+..+ +.++|.-+..++.+.+...+|..+|+.+.|++.+..|+
T Consensus 328 ~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 328 VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777788999999999999999999865332 23334446788999999999999999999998765655
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-06 Score=85.01 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=82.6
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
.....++..++.++.+++ .||+++| +.+..+..+.+++.+.....
T Consensus 58 ~~~~~~~~~~~~~~~g~l----~d~~g~~-------~~~~~~~~~~~~~~~~~~~~------------------------ 102 (398)
T TIGR00895 58 FSAGLIGMAFGALFFGPL----ADRIGRK-------RVLLWSILLFSVFTLLCALA------------------------ 102 (398)
T ss_pred HHHHHHHHHHHHHHhHHH----HHHhhhH-------HHHHHHHHHHHHHHHHHHHc------------------------
Confidence 334444555555554443 6665544 56667777766666555543
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
.+.+.+++..++.+++.+...+...+++.|.+|++.|++++++......+|..+++.+.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 25666777788899999999999999999999999999999999999999999999999888653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.5e-06 Score=87.53 Aligned_cols=139 Identities=15% Similarity=0.052 Sum_probs=116.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++...|.+.+++.+|..++.++.+++.+++ ++++.+..+.++++++.+..++++ +
T Consensus 252 ~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~~------------------------~ 306 (524)
T PF05977_consen 252 GASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALSP------------------------S 306 (524)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcch------------------------H
Confidence 456779999999999999999999999995 999999999999999988888875 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.+..++..++.|++.........+.+-+..|+ +.+++.++++++....+..+|..+.|++.+.+|-+..+.+.+
T Consensus 307 ~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~------~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~ 380 (524)
T PF05977_consen 307 FWLALIALFLAGAAWIIANSSLNTLVQLSVPD------WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAG 380 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 66777888899998888777777777676553 345669999999999999999999999999999999998887
Q ss_pred HHHHHHHHHH
Q 009538 162 FMMFLSCAMF 171 (532)
Q Consensus 162 ~~~~l~~~~~ 171 (532)
+.+++..++.
T Consensus 381 ~~lll~~~~~ 390 (524)
T PF05977_consen 381 AALLLSALIA 390 (524)
T ss_pred HHHHHHHHHH
Confidence 7665555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=95.99 Aligned_cols=131 Identities=15% Similarity=0.058 Sum_probs=103.9
Q ss_pred chh-hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSI-TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~-~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+.. +.+++.+.+.++..++.+++|+++||+ ++++++.++.++.+++.++..++.
T Consensus 266 s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 320 (1146)
T PRK08633 266 DNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPTAP------------------------ 320 (1146)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHHhh------------------------
Confidence 345 678888999999999999999999996 999999999888888888777763
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-cccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~-~~gw~~~F~v 159 (532)
+...+++..++.|++.++..+...+++.+.+|+ +.++++++++.+..++|.++++.+++.+.. .+++...|++
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~ 394 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE------KELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYL 394 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 456777888999999999988888999887764 233568999999999999888888777653 2455556665
Q ss_pred HHHH
Q 009538 160 PAFM 163 (532)
Q Consensus 160 ~~~~ 163 (532)
.+.+
T Consensus 395 ~~~~ 398 (1146)
T PRK08633 395 IALV 398 (1146)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=85.57 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=100.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+++.+++.....+.+++.++.+++|++.||+ ||||++..+..+..++.++..+..
T Consensus 292 ~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~------------------------ 346 (438)
T PRK10133 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG------------------------ 346 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcC------------------------
Confidence 3567889999999999999999999999995 999999998888777766655542
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v 159 (532)
+. .-+.+-.+.|+|.+...|...+...+.++++. + ...++.. ....|..++|.+.|++.+..| -|..|++
T Consensus 347 ~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~--~-----~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 347 GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT--K-----YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--c-----cchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence 11 12445677899999999999999999875421 1 1233332 233578888888999988887 7889988
Q ss_pred HHHHHHHHHH
Q 009538 160 PAFMMFLSCA 169 (532)
Q Consensus 160 ~~~~~~l~~~ 169 (532)
..+..+....
T Consensus 418 ~~~~~~~~~~ 427 (438)
T PRK10133 418 PALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHH
Confidence 7766554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.5e-05 Score=77.42 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=79.1
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..+..++.+++ .||+++| +.+.++.++..++.++.....
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~i~~~~~~~~~--------------------- 88 (366)
T TIGR00886 41 NLVAVPVLAGAVLRIILGFL----VDKFGPR-------YTTTLSLLLLAIPCLWAGLAV--------------------- 88 (366)
T ss_pred HhhHHHHHHHHHHHHHHHHH----HHHhCch-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34445555566666664444 7777666 567778888888777666541
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
.+.+.+++..++.|++.+.. +....++.+.+|++.|++.+++......+|..+++.+.+.+..
T Consensus 89 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 --QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred --hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 14566667778888886654 4567899999999999999999988888888888777766543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=84.91 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=95.0
Q ss_pred hhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
....++..++.++.+++ .+|+++| +.+..+.++.+++.++..... ..
T Consensus 83 s~~~~~~~~~~~~~g~l----~dr~g~r-------~~l~~~~~~~~~~~~~~~~~~----------------------~~ 129 (465)
T TIGR00894 83 SSHFYGQIIIQIPVGYL----AGKYVFK-------WSIGIGMFLSSVISIVIPWAA----------------------GG 129 (465)
T ss_pred HHHHHHHHHHHcchHHH----HHHhCcc-------hhhHHHHHHHHHHHHHHHHHH----------------------Hc
Confidence 33444555555554443 6776666 466667766666655544321 12
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.++++..-++.|++++...+....++.|.+|++.|++++++.+....+|..+++.+.+.+.+.. .+|
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw------- 197 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW------- 197 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC-------
Confidence 45567777889999999999999999999999999999999999999999999999998886531 023
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLCA 505 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~~ 505 (532)
...|++.+++.++..+..+...
T Consensus 198 ---~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 198 ---PMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred ---CeehhhhhHHHHHHHHHHHHHh
Confidence 3456666666665555444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-05 Score=81.73 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=96.2
Q ss_pred HHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 009538 14 SGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMV 93 (532)
Q Consensus 14 ~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 93 (532)
.+...+..+++|+|+||+ |+||++.++.+...+......... |. ....++..+.+.-+...
T Consensus 296 ~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~ 356 (462)
T PRK15034 296 PFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFSALLFLTL--PG----------------TGSGNFIAFYAVFMGLF 356 (462)
T ss_pred HHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHh--cc----------------ccccHHHHHHHHHHHHH
Confidence 455778889999999996 999999999988888775543331 10 00124566666655555
Q ss_pred HhccccccccccccccCCCCCCC---------------CcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-cccchhhh
Q 009538 94 IGAGGIRPCNLAFGADQFNPNTE---------------SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGL 157 (532)
Q Consensus 94 ~g~g~~~p~~~~~i~d~f~~~~~---------------~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~-~~gw~~~F 157 (532)
+..|.-...+..++.++||+++. +.+++-+...++......+|.++-|.+.|...+ .-++...|
T Consensus 357 ~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~ 436 (462)
T PRK15034 357 LTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAM 436 (462)
T ss_pred HHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHH
Confidence 55555555666677777753100 111245667777777888878888866555544 34688889
Q ss_pred HHHHHHHHHHHHHHHhhcce
Q 009538 158 GIPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~ 177 (532)
+...+..+++.++-|..+-|
T Consensus 437 ~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 437 KVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99888888888877665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.8e-05 Score=83.68 Aligned_cols=128 Identities=16% Similarity=0.065 Sum_probs=83.7
Q ss_pred HHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 009538 15 GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVI 94 (532)
Q Consensus 15 ~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 94 (532)
++..++.+++++++||+ |||++++++..+.+++.++.++..... .+...+...-+...+
T Consensus 346 ~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~ 404 (502)
T TIGR00887 346 AGTVPGYWVTVFLVDII-GRKPIQLMGFFILTVLFFVLGFAYNHL--------------------STHGFLAIYVLAQFF 404 (502)
T ss_pred HHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHHHHHHhc--------------------chhHHHHHHHHHHHH
Confidence 34555778899999995 999999999888888777666542100 001111111122222
Q ss_pred hccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc----------ccchhhhHHHHHHH
Q 009538 95 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD----------VSWAWGLGIPAFMM 164 (532)
Q Consensus 95 g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~----------~gw~~~F~v~~~~~ 164 (532)
+.....+....+.+|.+|+ +.|++.+++.+....+|.+++|.+.+++.+. .++...|++.++..
T Consensus 405 ~~~~~~~~~~~~~~E~~p~------~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 478 (502)
T TIGR00887 405 ANFGPNATTFIVPGEVFPT------RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFM 478 (502)
T ss_pred HhcCCCchhhhhhhccCch------hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHH
Confidence 2223345566778999875 3446789999999999999999999988763 34455677666655
Q ss_pred HHHHH
Q 009538 165 FLSCA 169 (532)
Q Consensus 165 ~l~~~ 169 (532)
+++.+
T Consensus 479 ~~~~i 483 (502)
T TIGR00887 479 FLGIL 483 (502)
T ss_pred HHHHH
Confidence 55544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.9e-05 Score=77.79 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.++++..-++.|+|++.. +.......|.+|++.|++++++.+....+|..+++.+.+.+.+.. +
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~------g-------- 142 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG------G-------- 142 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------c--------
Confidence 6778888889999999864 455667799999999999999999999999999999988886532 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLCAKWY 508 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~~~~~ 508 (532)
..+.|+..+++.++..+..+...|+.
T Consensus 143 --Wr~~f~~~~~l~~~~~~~~~~~lp~~ 168 (368)
T TIGR00903 143 --LQLLIIPIAAVAAAGIILVLAALPAL 168 (368)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35577777777777766666555553
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00021 Score=74.45 Aligned_cols=142 Identities=11% Similarity=0.151 Sum_probs=97.0
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+...+.+..+=++.-++. .++++|+++- +.+..|+.+..+=+..+...
T Consensus 409 Gv~~a~~~~gEI~~~ffs----~klI~kiGHv-------~v~~lgLa~~~~Rf~~~S~L--------------------- 456 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFS----FKLIEKIGHV-------NVMYLGLACNVGRFLYYSYL--------------------- 456 (618)
T ss_pred eehhhhhccchHHHHHHH----HHHHHHhccc-------ceeeehhhHHHHHHHHHHHh---------------------
Confidence 344555555555555553 3446665533 56666777766666666655
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FVGFAISNYLNGFLISMVHRFTKGASTGDWLP 475 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 475 (532)
.++|..++.-++.++-.+.++.+.-+|+...+|+++|.+++++. ...-.+|-.+|+.+.|.+....+
T Consensus 457 ---~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--------- 524 (618)
T KOG3762|consen 457 ---QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--------- 524 (618)
T ss_pred ---cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh---------
Confidence 37888899999999999999999999999999999999999997 44556677777777666654321
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009538 476 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 509 (532)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~ 509 (532)
.-..|..+++.+++.++.+...-+..+
T Consensus 525 -------~~ttf~~~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 525 -------ARTTFRIFGIACLVTLALFISIQLLLK 551 (618)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 234666666666666666555544333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0013 Score=67.51 Aligned_cols=128 Identities=12% Similarity=0.040 Sum_probs=85.6
Q ss_pred HHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 009538 13 FSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLM 92 (532)
Q Consensus 13 ~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 92 (532)
-.+...+.-+.+-+..+|. --+.=+.+..+++++|.++.+++. +.+.=+++-.+.
T Consensus 68 di~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~------------------------~v~~~l~Gv~la 122 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP------------------------SVWVRLLGVVLA 122 (402)
T ss_pred HHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc------------------------chhHHHHHHHHH
Confidence 3344556666777888885 655556667778888999998874 466778999999
Q ss_pred HHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-cccchhhhHHHHHHHHHHHHHH
Q 009538 93 VIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLGIPAFMMFLSCAMF 171 (532)
Q Consensus 93 G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~-~~gw~~~F~v~~~~~~l~~~~~ 171 (532)
+++.|.-...-.++.. .|++ . ..+.|..+...+.++|+..--.++. .++-|..+.+..++-++..+.+
T Consensus 123 s~ssg~GE~tfL~lt~-~y~~----~------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~ 191 (402)
T PF02487_consen 123 SLSSGLGEVTFLSLTH-FYGK----S------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSY 191 (402)
T ss_pred hhhhhhhHHHHHHHHH-hcCc----c------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888654 4542 1 3677777777777778765444443 2344667776665544444444
Q ss_pred Hhhcc
Q 009538 172 FLGSR 176 (532)
Q Consensus 172 ~~~~~ 176 (532)
+...+
T Consensus 192 f~~L~ 196 (402)
T PF02487_consen 192 FFLLP 196 (402)
T ss_pred HHhhc
Confidence 44443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.5e-05 Score=77.43 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=89.5
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+.......++..++.+..+++ .+|+++| +.+..|..+.+++.++.....
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l----~~r~G~r-------~~~~~g~~l~~~g~~l~~~~~-------------------- 89 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIF----MKKLSYK-------AGILLGLFLYALGAFLFWPAA-------------------- 89 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCch-------HHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 445556666777777765444 7777766 678888888888876654331
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 462 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~ 462 (532)
...+.+.++...++.|+|.+...+..+.++.+..|++.|++.+++.+..+.+|..+++.+.+.+.
T Consensus 90 -~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 90 -EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred -hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11356777778889999999999999999999999999999999999999999999999988875
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=79.90 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=109.3
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+.+...-.+.-++..|+++.+ .+|++.| ..+++|++++..+.+++++.+
T Consensus 109 G~LFaskA~~qllvnp~~G~l----~~~iGy~-------ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNL----IDRIGYK-------IPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred hHHHHHHHHHHHHhcccchhh----HHHhccc-------cHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 344444444555555554443 5555555 689999999999998888762
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM-RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 475 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~-rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 475 (532)
+.+.+++.=.++|+|.++..+...++.++.+|++. ||+++|....+-++|-.++|.+.|.+.+..|
T Consensus 158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--------- 224 (464)
T KOG3764|consen 158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--------- 224 (464)
T ss_pred ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---------
Confidence 56688888899999999999999999999999985 6999999999999999999999999987642
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 476 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
+...|.++++++++-.+.-++....
T Consensus 225 -------k~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 225 -------KSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred -------CcCcHHHHHHHHHHHHHHHHheeCc
Confidence 3457888888888877766665543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00017 Score=74.79 Aligned_cols=138 Identities=13% Similarity=0.103 Sum_probs=93.3
Q ss_pred hhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccc
Q 009538 319 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 398 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (532)
......+...++.++.+++ .||+++| +.+..+.++..++.+.....
T Consensus 48 ~~~~~~~~~~~~~~~~G~l----~Dr~grr-------~~~~~~~~~~~~~~~~~~~~----------------------- 93 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPL----SDRVGRR-------PVILVGMSIFILGTLVALFA----------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHhcCCh-------HHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3344555556666664444 7777665 56666777766666554432
Q ss_pred cchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 009538 399 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478 (532)
Q Consensus 399 ~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (532)
.+.+.++...++.+++.+...+....+..|..|++.++.+++..++...++..+++.+.+.+.+..
T Consensus 94 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------------- 159 (394)
T PRK11652 94 -HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF------------- 159 (394)
T ss_pred -ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 245666677788888887777777788889999999999999999999999999999888876532
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 479 ~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++...|+..+++.++..+......+|
T Consensus 160 ---g~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 160 ---GWRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 23456666655555444444444444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=79.78 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=106.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+...+...-.+...++++++|+|.||+ |-|+++.++++++.+..+..-+...
T Consensus 286 s~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~~~~~~------------------------ 340 (438)
T COG2270 286 SSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAALYLIFLEG------------------------ 340 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHHHHHHccc------------------------
Confidence 344555555566677888999999999995 9999999999999998887776531
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccc-cchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~-gw~~~F~v~ 160 (532)
-..+.+.-++.|+..|..++..-+|.++..|+++.. ++|++|....-..+.+||.+.+.+++.. +-|..+..-
T Consensus 341 ~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~------~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i 414 (438)
T COG2270 341 ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG------RFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSI 414 (438)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc------ceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 123555667889999999999999999999875543 3699999999999999999999987644 455555554
Q ss_pred HHHHHHHHHH
Q 009538 161 AFMMFLSCAM 170 (532)
Q Consensus 161 ~~~~~l~~~~ 170 (532)
+++..+++++
T Consensus 415 ~vll~iGl~~ 424 (438)
T COG2270 415 IVLLLIGLLL 424 (438)
T ss_pred HHHHHhhHhh
Confidence 4455555444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.1e-05 Score=80.48 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=92.8
Q ss_pred hhhhhhhHhHHhhhccchhhhccc-cccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
....+...++.++.+++ .|| +++| +.+.++.++.+++.+..+..
T Consensus 55 ~~~~~~~~~~~~~~G~l----aDr~~G~~-------~~l~~~~~~~~~g~~~~~~~------------------------ 99 (475)
T TIGR00924 55 GAYSALVYLLTSVGWWF----GDRVWGTK-------KTMVLGGIVLMLGHFMLAMS------------------------ 99 (475)
T ss_pred HHHHHHHHHHHhhHHHH----HHhhcchH-------HHHHHHHHHHHHHHHHHHhc------------------------
Confidence 33344444444544443 666 4554 67888888888887766643
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM---RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~---rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
.+.+.+.....+.++|.+...+...+++.+.+|++. |+.+.++.+....+|..+++.+.+.+.+..
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~----------- 168 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY----------- 168 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 134555667778899999988998999999998754 888999999999999999999999887532
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLC 504 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~ 504 (532)
++.+.|...++..+++.+.++..
T Consensus 169 -----g~~~~f~~~~~~~~~~~l~~~~~ 191 (475)
T TIGR00924 169 -----GYHVGFNLAAVGMVIGLLTFFAG 191 (475)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHc
Confidence 24566766665555554444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-05 Score=78.62 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=110.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc-
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP- 79 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 79 (532)
+++.+++.....+.+...+.-++||+|+||+ |.+|++++....++++..+..+..+.. ..+++.
T Consensus 251 ~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~~~~~--------------~~~~~~~ 315 (417)
T COG2223 251 LSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLFLTGF--------------GHGGSFV 315 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHcccccc--------------ccCcchH
Confidence 3567788999999999999999999999996 999999999999999988888764211 001111
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhH
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLG 158 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~ 158 (532)
..+..++...+..|+|.|. +...+..+|+. +.+...++.....++|.+.-|...+...+..| +...|+
T Consensus 316 ~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-------~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~ 384 (417)
T COG2223 316 VFVAVFLALFVFAGLGNGS----VFKMIPVIFPK-------ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM 384 (417)
T ss_pred HHHHHHHHHHHHhccCcch----heeechHHHHh-------hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence 2345566677777777776 44555555542 22346777777888888888888888777666 889999
Q ss_pred HHHHHHHHHHHHHHhhcce
Q 009538 159 IPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 159 v~~~~~~l~~~~~~~~~~~ 177 (532)
+-....+++++..+..+.+
T Consensus 385 ~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 385 LLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888777777765555444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=92.12 Aligned_cols=151 Identities=15% Similarity=-0.004 Sum_probs=104.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.+++.++.++.|+++|++ ++++.+..+.++.+++.+.+++... ....+....-.-..++ ...+
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---~~~~ 333 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASS-SVPAEPAQLKSILVFL---SKRH 333 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhccc-ccccccccccchhhhh---cccc
Confidence 456789999999999999999999999986 8877777776666666655554200 0000000000000000 0024
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-ccccchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-~~~gw~~~F~v~ 160 (532)
.+.++++-++.|++.+...+...+++.+.+|++ .++++++.+.....+|..+|+++.+.+. ...++...|++.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~ 407 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPA------HRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI 407 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc------cceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 566788899999999999998999999987753 2345899999999999999999988886 456777776655
Q ss_pred HHH
Q 009538 161 AFM 163 (532)
Q Consensus 161 ~~~ 163 (532)
+..
T Consensus 408 ~~~ 410 (1140)
T PRK06814 408 ALA 410 (1140)
T ss_pred HHH
Confidence 443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=76.52 Aligned_cols=174 Identities=12% Similarity=0.039 Sum_probs=103.3
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccC-
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM-AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRR- 394 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 394 (532)
........+..++..|+.+.++++...|++|| +.+ ..|.....+++.+++......... .++.
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR-------rp~il~g~~~~~~~l~ll~~~~~~~~~~--------~~~~~ 106 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR-------RPFIAAGAALVAFAVILIGFAADIGHLF--------GDNLD 106 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh-------HHHHHHHHHHHHHHHHHHHhCchhhhhc--------ccccc
Confidence 34455667777777888888755444456655 333 445666666666655432110000 0000
Q ss_pred CccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhH--HHHHHHHHHHHHHHHHHHHHHHHHhc--cccc--CC
Q 009538 395 GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVH--RFTK--GA 468 (532)
Q Consensus 395 ~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~r--g~~~gl~~~~~~ig~~l~~~~~~~~~--~~~~--~~ 468 (532)
+.......+..+..+.+..++.....++..+++.|.+|++.| +.+.++......+|+.++..+.+... +..+ ..
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~ 186 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT 186 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence 001112224445555566677777778889999999998865 57899999999999999998877641 1110 00
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009538 469 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 510 (532)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~ 510 (532)
...+.++ .++...|++.+++.+++.+...+..+|.+.
T Consensus 187 ~~~~~~~-----~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 187 EACGVSC-----ANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred ccccccc-----chHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 0001111 246677877777777777777777777554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.5e-05 Score=77.34 Aligned_cols=136 Identities=15% Similarity=0.008 Sum_probs=98.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+.+.++..++++..+++.||+ ++|+++..+.. .++..++.++.+ +
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~------------------------~ 292 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH------------------------S 292 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh------------------------H
Confidence 567788999999999999999999999996 99998887753 334333344432 4
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
.+...+.-++.|++.+...+...+.+.+. +|++ ..+++..+..+...++|..++..+.+.+ ...|=+..+.+..
T Consensus 293 ~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~----~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 366 (393)
T PRK11195 293 LLPAYPLLILIGALGGFFVVPMNALLQHR-GHVL----VGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVG 366 (393)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhh-Cccc----ccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence 55566777889999999888788877774 3321 1245688899999999999999988866 3466666666655
Q ss_pred HHHHHHHH
Q 009538 162 FMMFLSCA 169 (532)
Q Consensus 162 ~~~~l~~~ 169 (532)
...++.+.
T Consensus 367 ~~~~~~~~ 374 (393)
T PRK11195 367 FGLLVALA 374 (393)
T ss_pred HHHHHHHH
Confidence 54444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=76.10 Aligned_cols=127 Identities=11% Similarity=-0.027 Sum_probs=88.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+...+..+..++.+.++++.||+ |+|+.+....+..+++.+.+........ .+
T Consensus 236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 295 (401)
T PRK11043 236 SPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLSH-------------------PS 295 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------Cc
Confidence 455667777777788888999999999995 9999887776666666554333221110 13
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchh
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAW 155 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~ 155 (532)
...++++-.+.|++.+...|.......|..|+ .+++..+++......+..+++.+.+.+.++.....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 44556667788999999999888877776542 22457888888878888888888888766444343
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00032 Score=75.49 Aligned_cols=112 Identities=7% Similarity=0.086 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh
Q 009538 356 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 435 (532)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~ 435 (532)
+.+..|.++.+++...+.... .+.+.+....++.++|.++..+...+++.+.+|++.
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD 145 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence 677788888777766655431 123445556678889999888888899999998653
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 436 --RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 436 --rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
|+.+.+++++...+|..+++.+.+++.+.. ++.+.|.+.++..+++.+.+++..+
T Consensus 146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~----------------g~~~~F~i~~i~~~i~~i~~~~~~~ 202 (500)
T PRK09584 146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAKY----------------GWSVAFALSVVGMLITVVNFAFCQR 202 (500)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455788888999999999999999987632 2456777666555555554444433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=76.65 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=72.6
Q ss_pred ccc-cccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhh
Q 009538 342 LQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420 (532)
Q Consensus 342 ~~~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~ 420 (532)
.|| +++| +.+.+|.++..++.+.+++.. .....+....+++++|.++..
T Consensus 74 aDr~~G~r-------~~~~~g~~~~~~g~~~~~~~~-----------------------~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 74 GDHLLGTK-------RTIVLGAIVLAIGYFMTGMSL-----------------------LKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred hhhccchH-------HHHHHHHHHHHHHHHHHHHhc-----------------------cchhHHHHHHHHHHhcccccc
Confidence 666 5555 788889998888877776541 112223356778899999999
Q ss_pred hhhhhhhhcccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 421 IAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 421 ~~~~~~~~~~~P~~--~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
+...+++.|.+|++ .|+.+.+++.+...+|..+++.+.+++.+.
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887 457789999999999999999999998753
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00023 Score=75.81 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=78.3
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhh
Q 009538 342 LQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420 (532)
Q Consensus 342 ~~~~-~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~ 420 (532)
.||+ ++| +.+.+|.++..++.+..+... .+.......+.+..+|.+...
T Consensus 69 aDRilGrr-------r~iliG~il~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~ 118 (493)
T PRK15462 69 ADKVLGNR-------MAVMLGALLMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFK 118 (493)
T ss_pred HHHccCcH-------HHHHHHHHHHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhccccc
Confidence 6665 444 567788888777765444211 111223334445556777766
Q ss_pred hhhhhhhhcccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 009538 421 IAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNF 498 (532)
Q Consensus 421 ~~~~~~~~~~~P~~--~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 498 (532)
+...+++.|.+|++ .|+++.++.+....+|+.+++.+.+++.+.. ++.+.|...++.++++.
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIAGL 182 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHHHH
Confidence 77788999999976 7999999999999999999999999986532 24566766555555555
Q ss_pred HHHHHh
Q 009538 499 GFFLLC 504 (532)
Q Consensus 499 ~~~~~~ 504 (532)
+.+++.
T Consensus 183 i~~~~~ 188 (493)
T PRK15462 183 VIFLCG 188 (493)
T ss_pred HHHHHh
Confidence 554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00033 Score=71.58 Aligned_cols=99 Identities=20% Similarity=0.134 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.+.+....++.+++.....++..+++.|.+|++.|+.++++......+|..+++.+.+.+.+..+. ++.+.
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~--------~~~~~ 153 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA--------NTGLI 153 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------ccccc
Confidence 4555556666777888888889999999999999999999999999999999999998887654321 00111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
..+...|++.+++.++..+..+...+|
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 123456666665555544443333343
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.1e-05 Score=78.82 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.+++...+.++..++.+++++++||+ |||+++..+..+.++..++..+.+. .+...+
T Consensus 265 ~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 321 (460)
T PRK11462 265 FVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVPM----------------------QASITM 321 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhch----------------------hHHHHH
Confidence 35566677788888999999999995 9999987666555554444333221 122234
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCC-CcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccc
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSW 153 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~-~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw 153 (532)
++.-++.|++.+...+...++++|....+|- .++|.-+..++.+.+...+|..+|+.++|++....|+
T Consensus 322 ~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 322 FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555667888887777777888886542221 2222334557888889999999999998887655455
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=75.19 Aligned_cols=123 Identities=9% Similarity=0.065 Sum_probs=86.5
Q ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhh
Q 009538 341 RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTI 420 (532)
Q Consensus 341 ~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~ 420 (532)
+.+|+++| +.+.+|.++.+++.++.++... .....+.+.+.+..++.|+|.+...
T Consensus 84 L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~------------------~~i~~s~~~l~l~r~l~G~G~~~~~ 138 (591)
T PTZ00207 84 IYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQ------------------EVIEGSVVRLSVYNGLMTLGCMLFD 138 (591)
T ss_pred HHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhc------------------ccccCcHHHHHHHHHHHHHHHHHHH
Confidence 36666555 6888899998888887776421 0011367777778889999999888
Q ss_pred hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 009538 421 IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGF 500 (532)
Q Consensus 421 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~ 500 (532)
+.....+.+.+| +.||.+.|+......+|+.+.+.+...+... +....+++++++.++..+.
T Consensus 139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------------~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------------NTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHH
Confidence 888888999998 5689999999999999998755555544321 1345666667666666555
Q ss_pred HHHhhh
Q 009538 501 FLLCAK 506 (532)
Q Consensus 501 ~~~~~~ 506 (532)
.+.+.+
T Consensus 201 ~~~~vr 206 (591)
T PTZ00207 201 AIVFMR 206 (591)
T ss_pred HHhhee
Confidence 555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.3e-05 Score=81.79 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=119.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFG--RYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~G--rr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
+++.+++.+.++....-.++-+..|+++|+. . ++.++.+++++.+++...+.++.
T Consensus 330 ~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~p~~~---------------------- 386 (509)
T KOG2504|consen 330 LSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFLPFAT---------------------- 386 (509)
T ss_pred CChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 3678889999999999999999999999996 7 56666677777777777777774
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F 157 (532)
++..++..-++.|+..|.........+.|....++ ...++++......++.++||.+.|++.+..+ |...|
T Consensus 387 --~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f 458 (509)
T KOG2504|consen 387 --TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF 458 (509)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence 57789999999999999999988889999876533 3446999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 009538 158 GIPAFMMFLSCAMFFLGS 175 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~ 175 (532)
+..++.++++...++...
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 998888777766555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00091 Score=69.92 Aligned_cols=82 Identities=9% Similarity=0.070 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh
Q 009538 356 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 435 (532)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~ 435 (532)
+.+..+++..++..++.++. .+.+.+.+.-++.|++|+... +.+.++++-+|++.
T Consensus 93 ~vL~l~~l~Wsl~t~L~~fa------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE 147 (511)
T TIGR00806 93 PVLVLQALSFVCVWLLLLLG------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR 147 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH
Confidence 67778888888877777765 367788888999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009538 436 RSIGGSLAFVGFAISNYLNGFLISMVH 462 (532)
Q Consensus 436 rg~~~gl~~~~~~ig~~l~~~~~~~~~ 462 (532)
|++++|+.+....+|.++++.+.+++.
T Consensus 148 R~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 148 YQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999844
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=76.37 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 480 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
+.+.+++..++.|+.|+..+|+...+...-+.++.||.-+|+++..+.+|+.+++.+...+....+.....
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~--------- 203 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA--------- 203 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC---------
Confidence 67788888999999999999999999999999999999999999999999999999988865433222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009538 481 GRLDYFYYLVAALGLLNFGFFLLCAKWYKY 510 (532)
Q Consensus 481 ~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~ 510 (532)
++.|.|++-+++.++..++.+++.|....
T Consensus 204 -gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 204 -GWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred -CceeehhHHHHHHHHHHheEEEEecCChh
Confidence 34778888888888887776666665443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=79.42 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
.+..+++.-++.|+|++...+...+++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.+.
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 3556667889999999999999999999999999999999999999999999999999988753
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=69.80 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=93.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHH-HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGF-ASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~-~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
+|+..++.+.+......++..++.|.++|++ ||+-.... +++...+++.+..|+.-
T Consensus 297 lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft~l---------------------- 353 (459)
T KOG4686|consen 297 LSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFTFL---------------------- 353 (459)
T ss_pred CChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhhhc----------------------
Confidence 4677888999999999999999999999997 99876655 45556667888888741
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc---chhh
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWG 156 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g---w~~~ 156 (532)
.=+++-.+.|+...+.-...-..++...|+ ++++++++..+...|+|-++-|++.|++.++-| |--.
T Consensus 354 ----sPy~~m~~lGLsysllAcslWP~va~~vpE------~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ 423 (459)
T KOG4686|consen 354 ----SPYTSMTFLGLSYSLLACSLWPCVASLVPE------EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEA 423 (459)
T ss_pred ----cHHHHHHHHhhhHHHHHHHHhhhhhhhCCH------HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHH
Confidence 123444555666544333333344444442 566789999999999999999999999987654 4445
Q ss_pred hHHHHHHH
Q 009538 157 LGIPAFMM 164 (532)
Q Consensus 157 F~v~~~~~ 164 (532)
|.+....+
T Consensus 424 ffl~~~~~ 431 (459)
T KOG4686|consen 424 FFLIIGLM 431 (459)
T ss_pred HHHHHHHH
Confidence 66554433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00043 Score=73.31 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=100.9
Q ss_pred hhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHh
Q 009538 339 VPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418 (532)
Q Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~ 418 (532)
..+.+|++.| +.+..+.++.+++.++..+... .+.+.+++.=+++|++++.
T Consensus 94 g~l~~k~G~r-------~v~~~~~~~sa~~t~l~P~aa~----------------------~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 94 GYLADKFGAR-------RVFFISGLISALLTLLTPLAAS----------------------IGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred HHHHHHcCch-------HHHHHHHHHHHHHHHHHHHHHH----------------------hcchhhHHHHHHhHHHHhH
Confidence 3447777766 6788888888888877777642 4555667788999999999
Q ss_pred hhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 009538 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNF 498 (532)
Q Consensus 419 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 498 (532)
..|+...+..+-+|++.|++..++......+|.+++-.+.|.+-+.. .+| ...|++.++++++..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~ 209 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWF 209 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887641 134 678899999988887
Q ss_pred HHHHHhhh
Q 009538 499 GFFLLCAK 506 (532)
Q Consensus 499 ~~~~~~~~ 506 (532)
+..+.+..
T Consensus 210 ~~w~~~~~ 217 (466)
T KOG2532|consen 210 ILWFLFYS 217 (466)
T ss_pred HHHHHHhc
Confidence 76666654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=64.24 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=97.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc-
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP- 79 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 79 (532)
+|.+|.+.+...-.+|.+++ ++.|.+.|++ |.+.++++|.+...+|..++..+-+ ++.+
T Consensus 34 ~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~------------------~~i~~ 93 (250)
T PF06813_consen 34 YSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS------------------GRIPS 93 (250)
T ss_pred CCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh------------------CccCc
Confidence 46788888999999998874 8889999996 9999999999999999998777642 1111
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
.+++.+.+..++.|.|...+...+.....+.||. .|+++.++.-....+++++-..+...+-++..-...+.+
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-------~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l 166 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-------SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL 166 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-------ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 3567788888888888777666666666677873 224567766666666666555554444333333444444
Q ss_pred HHHHHHHHHHHHH
Q 009538 160 PAFMMFLSCAMFF 172 (532)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (532)
.....++.++..+
T Consensus 167 a~~~~~v~l~~~~ 179 (250)
T PF06813_consen 167 AVLPAVVCLVAMF 179 (250)
T ss_pred HHHHHHHHHHHhh
Confidence 4433444433333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0015 Score=68.28 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.......+..+..++.++..+|++|+ |||+++.++.++..++.++.-+.+ ..+...+
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~~~~f~~----------------------~~~~~l~ 330 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYLLLYFTP----------------------AGSVVLI 330 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHHHHHhhc----------------------CcchHHH
Confidence 34455556666667799999999995 999999999999999999999975 1368889
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCC-CcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTE-SGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 152 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~-~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g 152 (532)
++..++.++|.+...+..-++++|.....|- .++|.=+..++.+.++.=+|.+++..+.|++....|
T Consensus 331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998653322 222233567788888888999998888777654443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=69.57 Aligned_cols=154 Identities=13% Similarity=0.025 Sum_probs=101.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..++.+....-.....+..+.+.++.||+ |||+.++++.....+..+++..+..+..... ++..
T Consensus 303 ~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~ 367 (485)
T KOG0569|consen 303 TPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVALLLMSIALFLSNSFG--------------SWLS 367 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHH
Confidence 466778888888888899999999999996 9999999999999999988887654432000 0001
Q ss_pred HHHHHHHHHHHHHhccc-cccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGG-IRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~-~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+ ..+++.++-.++.+. .-|...-+.+|.||+.. |..++++-.....+..++-......+.+.+|= +.|.+.
T Consensus 368 y-~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF 439 (485)
T KOG0569|consen 368 Y-LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILF 439 (485)
T ss_pred H-HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHH
Confidence 1 122333333332222 25777788899988633 23467766666666666666666777666664 666666
Q ss_pred HHHHHHHHHHHHhhccee
Q 009538 161 AFMMFLSCAMFFLGSRLY 178 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~ 178 (532)
.+...+..+..+...|+.
T Consensus 440 ~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 440 VIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 666555555555555553
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00085 Score=63.95 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=73.4
Q ss_pred HHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhc
Q 009538 17 TNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGA 96 (532)
Q Consensus 17 ~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~ 96 (532)
..+...+.|-|+|+- |||+ +++.+++..++++++-- .+++-+++++|.+-|+..
T Consensus 85 smLFGtivgSLaDkq-GRKr----acvtycitYiLsCiTKh---------------------SpqYkVLmVGR~LGGiaT 138 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQ-GRKR----ACVTYCITYILSCITKH---------------------SPQYKVLMVGRVLGGIAT 138 (454)
T ss_pred HHHHHHHHHHHHhhh-cccc----ceeeehHHHHHHHHhhc---------------------CCceEEEeehhhhhhHHH
Confidence 445666778899995 9999 56788888999888642 135778999999999999
Q ss_pred cccccccccc-cccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhcccc--ccchhhhHHHHHHHHHHHHH
Q 009538 97 GGIRPCNLAF-GADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSD--VSWAWGLGIPAFMMFLSCAM 170 (532)
Q Consensus 97 g~~~p~~~~~-i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~--~gw~~~F~v~~~~~~l~~~~ 170 (532)
.....+-.+. ++|.-..++-+ .+.+..-++- ..+...+-++++.+.+-.+.++ +|--.+|-..+++..++..+
T Consensus 139 sLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAv 215 (454)
T KOG4332|consen 139 SLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAV 215 (454)
T ss_pred HHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 8887765554 44432111110 0111000110 0112222223333444445443 35557787777665555444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.012 Score=60.62 Aligned_cols=123 Identities=10% Similarity=-0.032 Sum_probs=86.5
Q ss_pred HHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 009538 16 TTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIG 95 (532)
Q Consensus 16 ~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 95 (532)
.+....++...++|. +|-|++++++.+...+..+++-+.. ++..+-+.-++-|++
T Consensus 53 Syl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~------------------------sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 53 SYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT------------------------SVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC------------------------cHHHHHHHHHHHHHH
Confidence 345688889999999 5999999999999999999988885 466788888888887
Q ss_pred ccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc--cccchhhhHHHHHHHHHHHHH
Q 009538 96 AGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS--DVSWAWGLGIPAFMMFLSCAM 170 (532)
Q Consensus 96 ~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~--~~gw~~~F~v~~~~~~l~~~~ 170 (532)
.+. ..+.++|+=...+ +++ -.++.+....+.-+|-.+|.++|-.+.. ..+++..+++......++++.
T Consensus 108 ~a~-evay~sYiys~v~---~~~---yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVD---KEH---YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHH-HHHHHHHheeecC---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 776 3334444444333 222 2345667777788888888777766654 456667777777655555544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=72.00 Aligned_cols=137 Identities=9% Similarity=0.072 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHH
Q 009538 7 TTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLF 86 (532)
Q Consensus 7 ~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (532)
|.+.+.=.+.=.++-.+..++-+|+ |.|+.++++..++++=.+++++++ +.+.+.
T Consensus 262 G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~~iRi~~~~~~~------------------------~~~~i~ 316 (412)
T PF01306_consen 262 GYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIMAIRIIGSGFAT------------------------NPWVIS 316 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT--------------------------SHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHHhhhc------------------------chHHHH
Confidence 4444444444556777889999995 999999999999999999999986 567899
Q ss_pred HHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHH
Q 009538 87 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMF 165 (532)
Q Consensus 87 ~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~ 165 (532)
+.+.+.|+-.++.......|+++.|++ +..++.+.+ ++.+..+|..+.+.++|++-++.|.+-.|++.+..++
T Consensus 317 ~~klLH~~e~~l~lva~fkYI~~~fd~------rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 317 LIKLLHALEFPLLLVAAFKYITAHFDK------RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-G------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH------hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999874 222345554 4678889999999999999999999999988776655
Q ss_pred HHHHHHHhh
Q 009538 166 LSCAMFFLG 174 (532)
Q Consensus 166 l~~~~~~~~ 174 (532)
...++-...
T Consensus 391 ~~~li~~f~ 399 (412)
T PF01306_consen 391 PFTLISAFT 399 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHheee
Confidence 544443333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00071 Score=67.52 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=104.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|..+++++++...+.....++..-.+++|.--+|+........+.+|...+.+.+.
T Consensus 240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~----------------------- 296 (395)
T COG2807 240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG----------------------- 296 (395)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-----------------------
Confidence 478899999999999999999999999997657788888889999999998888752
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-ccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-~gw~~~F~v 159 (532)
+ ..+..-+++|+|.|...|....++.+..+. +++. +..-++-+-...+=+..||.+.|++.|. .+|+.++..
T Consensus 297 ~--~~~lw~~llG~G~G~~F~laL~li~~rs~~--a~~A---a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 297 Q--LPILWALLLGLGQGGAFPLALTLILLRSSD--AAIA---AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred h--HHHHHHHHHhCccchHHHHHHHHHHhhcCC--hHHH---HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 1 233335899999999999999999998643 2222 3344455555566677789999998764 468877766
Q ss_pred HHHHHHHHHH
Q 009538 160 PAFMMFLSCA 169 (532)
Q Consensus 160 ~~~~~~l~~~ 169 (532)
-+...++..+
T Consensus 370 l~~~~i~m~i 379 (395)
T COG2807 370 LALATLLMLI 379 (395)
T ss_pred HHHHHHHHHH
Confidence 5544443333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=69.33 Aligned_cols=130 Identities=14% Similarity=0.062 Sum_probs=94.9
Q ss_pred HHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc
Q 009538 18 NFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG 97 (532)
Q Consensus 18 ~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 97 (532)
...-.+.+++..|+ |.|+++.++++.+++=..+.+..++.+ +..+...+++..++|+.-|
T Consensus 257 i~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~~~~~-------------------~~~~~~~~l~q~lhG~tf~ 316 (400)
T PF03825_consen 257 IPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYFSDPW-------------------PFIVALQLLGQLLHGLTFG 316 (400)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcCCc-------------------HHHHHHHHHHHhhhhHHHH
Confidence 35667889999995 999999999999999988888873100 0123345566778999999
Q ss_pred ccccccccccccCCCCCCCCcccchhhhhhhhHHH-HhHHHHHHHHhhhhccccccch------hhhHHHHHHHHHHHHH
Q 009538 98 GIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT-FTFAMMISLTVIVYVQSDVSWA------WGLGIPAFMMFLSCAM 170 (532)
Q Consensus 98 ~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~-~~~G~~~g~~~~g~i~~~~gw~------~~F~v~~~~~~l~~~~ 170 (532)
.+.++...|+.+..|++ .+++..+++... ..+|..+|..++|++-+++|-+ ..|.+.+.+.++..+.
T Consensus 317 ~~~~a~~~yi~~~~p~~------~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 317 LFHAASVRYIDRIAPPE------LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHHHHhCCcc------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998752 234567776654 5699999999999998877644 4445555544444444
Q ss_pred HHh
Q 009538 171 FFL 173 (532)
Q Consensus 171 ~~~ 173 (532)
++.
T Consensus 391 f~~ 393 (400)
T PF03825_consen 391 FVI 393 (400)
T ss_pred HHh
Confidence 433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0035 Score=65.82 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=106.0
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+.......++-.++.|+++.+ -.|.. +..+.+..|.+++.++.++++..++
T Consensus 74 G~viaa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~------------------- 124 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAY------------------- 124 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344445667777777776665 22221 1135688999999999999876654
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
..+-..+.+++..++.|+|.+.... .-.|+++..-.+.|.++++.....+.+|..+||.+.+.+...... ...+++.
T Consensus 125 ~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~~~ 201 (488)
T KOG2325|consen 125 VPNGVKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--GFMILPG 201 (488)
T ss_pred cccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEcCc
Confidence 1122678888899999998665443 356777765566677777777777777777777766665433211 1123332
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 512 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~ 512 (532)
+.-+.|...=|+.+++.++.+++..++.+|.....
T Consensus 202 -~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 202 -LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred -ceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 33445666667788888888888888877765443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=66.29 Aligned_cols=96 Identities=10% Similarity=0.071 Sum_probs=73.7
Q ss_pred HHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc
Q 009538 18 NFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG 97 (532)
Q Consensus 18 ~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 97 (532)
.-+.++.+++.|| +|||+++....+++++..++....-+ + ..-...++.+|++...
T Consensus 395 fPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~-------------------r-n~~tvllf~arafisg--- 450 (528)
T KOG0253|consen 395 FPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKT-------------------R-NAYTVLLFTARAFISG--- 450 (528)
T ss_pred CCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcC-------------------c-chhHHHHHHHHHHHhc---
Confidence 3488999999999 59999999999999999888777532 1 1235678889987743
Q ss_pred ccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhh
Q 009538 98 GIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 144 (532)
Q Consensus 98 ~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~ 144 (532)
...+++.|--|.||. ..|++..+.-..+.-+|+++.|.+.
T Consensus 451 -~fqvaYvYtPEVyPT------avRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 451 -AFQVAYVYTPEVYPT------AVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred -hheEEEEecCcccch------hhhhcchhhhhhHHhhhhhhhhHHH
Confidence 344588888999874 2335567777778899999999887
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00065 Score=72.44 Aligned_cols=130 Identities=11% Similarity=-0.096 Sum_probs=98.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+.+.+...++..++....+++.+|+ +.|+++.++.++.+++.+......+-..+. . | ..+
T Consensus 286 s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~---~---------g--i~~ 350 (468)
T TIGR00788 286 GPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA---F---------G--ISD 350 (468)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc---c---------C--CCC
Confidence 577788888889999999999999999995 999999999999999886654221000000 0 0 012
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 152 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g 152 (532)
...++..-++.+++.+........++.+..|++. .++.++++....++|..+++.+++++.++.|
T Consensus 351 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 351 EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2345566788888888888888999999876532 2457999999999999999999999988777
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00082 Score=67.39 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=84.3
Q ss_pred hhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCC
Q 009538 316 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 395 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (532)
.+.+.....+.-.+..|+++++ .|+++|| ..+.++.+..++.....+..
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~----SD~yGRk-------pvll~c~~~va~s~ll~~~S-------------------- 118 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCL----SDRYGRK-------PVLLACLIGVALSYLLWALS-------------------- 118 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhh----hhhhCch-------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence 4555566666667777776665 7888777 56777777776665555543
Q ss_pred ccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 396 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 396 ~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
-+...++..=++.|+..+..... .++++|.++++.|+.+++.......+|..+||.+.+.+..
T Consensus 119 ----~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 ----RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ----HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 23434444467888888777655 7899999999999999999999999999999999998764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.011 Score=64.05 Aligned_cols=136 Identities=14% Similarity=0.293 Sum_probs=88.9
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
++...+.+...+..|+++++ .|.++|| ..++.|.++..++.++.+-.
T Consensus 82 w~~~~~~l~~av~~~~~G~L----SDlfGRr-------~~~i~g~~l~vvG~Iv~atA---------------------- 128 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRL----SDLFGRR-------YFFIIGSLLGVVGSIVCATA---------------------- 128 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHH----HHHhcch-------HHHHHHHHHHHhHHHHhhcC----------------------
Confidence 44455666666667776555 7777766 67788888888888777644
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
.+...++....+.|+|.+.... ....++|..|.+.|..+.++.....-+....++.+...+... .+ |
T Consensus 129 --~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~----~~--W---- 195 (599)
T PF06609_consen 129 --QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH----SG--W---- 195 (599)
T ss_pred --CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC----CC--c----
Confidence 3566777788888888666554 355689999999998888776655544444555555444321 12 2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCA 505 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~ 505 (532)
-|.|++..++..++++..++++
T Consensus 196 ------Rw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 196 ------RWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666665544444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0063 Score=62.10 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=117.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++..+.+.+...+..+..++-...|++..|..++|++-.+++....++..+..++....
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~--------------------- 299 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG--------------------- 299 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 46778889999999999999999999988546999999999999999988888775322
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc----------c
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------D 150 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~----------~ 150 (532)
+-+.|..+-++.|+|.|.+.....+.+-|...++ +-+..++.|.....+...+|-.++|.+.+ .
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~------~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~ 373 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG------RAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPA 373 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4578999999999999999999999999976532 22468999999999988888888887532 3
Q ss_pred ccchhhhHHHHHHHHHHHHHHH
Q 009538 151 VSWAWGLGIPAFMMFLSCAMFF 172 (532)
Q Consensus 151 ~gw~~~F~v~~~~~~l~~~~~~ 172 (532)
.+|-.+|.+.++.++++..+..
T Consensus 374 ~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 374 LAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888887777665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0028 Score=68.59 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=94.4
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
+.+..++.+++..+ ..++.++++|| ..+.+++++..++-...++.
T Consensus 124 ~s~~~~G~~vG~~i----~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a------------------------ 168 (521)
T KOG0255|consen 124 QSLFFLGVLVGSLI----FGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA------------------------ 168 (521)
T ss_pred HHHHHHHHHHHHhh----heehHhhcccH-------HHHHHHHHHHHHHHHHHHHh------------------------
Confidence 34444455555444 33447776766 57777777777666555554
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 009538 400 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479 (532)
Q Consensus 400 ~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (532)
.+.+..++.-++.|++........+.+..|..+++.|+.+..+ ....+.++.+++...+++.. +
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~------- 232 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------D------- 232 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------h-------
Confidence 4788888889999999999999999999999999999999999 88888999999988888764 2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 009538 480 KGRLDYFYYLVAALGLLNFGF 500 (532)
Q Consensus 480 ~~~~~~~~~~~~~~~vv~~~~ 500 (532)
+-+.+++..+..++.++.
T Consensus 233 ---Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 233 ---WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 345666666666655555
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.079 Score=58.65 Aligned_cols=313 Identities=8% Similarity=-0.081 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHH
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAF 84 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (532)
......++|....++..+.....+|...|+-..+..-+....++.+...+.+. +.. +...+...
T Consensus 21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~---------------~~~~~~~~ 84 (654)
T TIGR00926 21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI---------------PSSGHPLH 84 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC---------------cccccchH
Confidence 34556778888889999999999999877778888888777777777777642 110 11112344
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chh-------h
Q 009538 85 LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAW-------G 156 (532)
Q Consensus 85 l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~-------~ 156 (532)
..+.-+.+.+++++..++.+.+-++....-+ .+.+.+..+.+++..+.+.+. .+++..+..+.. +.. -
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcch
Confidence 5667788899999999999999999876432 367778999999999988875 577777766543 321 2
Q ss_pred hHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccch
Q 009538 157 LGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCL 236 (532)
Q Consensus 157 F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (532)
++..++.+++.++.++.+...++..++++.+...+.++...+....+.+.
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~------------------------------ 210 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRF------------------------------ 210 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhh------------------------------
Confidence 23455566666666677766665555544433333333332222111000
Q ss_pred hhhcccCCcccccCCCCCCCCCccch--hhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee
Q 009538 237 DKAAIMTPEDQIKSDGSAINPWRLSS--MQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI 314 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
.. .+......|.... +...++.+...+++.++...+.+++.+.+.......+..+.++..+ .+..
T Consensus 211 -----~~------~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~--~l~g 277 (654)
T TIGR00926 211 -----ST------RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG--DVGG 277 (654)
T ss_pred -----cc------CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC--ccCC
Confidence 00 0000001221111 1122345667778888878887887776654455455444544433 2222
Q ss_pred ChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009538 315 PAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 383 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 383 (532)
.......++.+-.++..++...+..+++.++.++ ..+..++.-+.+.+.++.+.+++.+....+..
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567778888888888888777888887554 55677788888888888888888876555555
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=63.78 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=85.2
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+.+.....++..++.++.++ +.|+++|| ..+..+.++..++.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~----l~d~~GRk-------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGR----LGDRIGRK-------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34555555555666666444 47777776 67777888888887777765
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 462 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~ 462 (532)
.+.++++..-++.|+|.+........|.+|.+|++.||...+...+...+|..++ .+.+...
T Consensus 140 ---~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~ 201 (513)
T KOG0254|consen 140 ---PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT 201 (513)
T ss_pred ---hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence 3788999999999999999998999999999999999999999999988777777 4544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.63 Score=48.80 Aligned_cols=152 Identities=11% Similarity=-0.064 Sum_probs=85.1
Q ss_pred HHHHHHH----HHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 10 INIFSGT----TNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 10 ~~~~~~~----~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
+++|.+. ..++.+.-|...||. -|.|++..+.+..-++.++.+..-..--..+ ...++ ........+
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~-~~~~~-------~~~~~~~l~ 110 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVAASCALFLLLLSYP-SSSSQ-------SSWLFIALF 110 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-ccccc-------cchHHHHHH
Confidence 4555544 345777788889996 9999999888877776655444311000000 00000 001122223
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHH
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMF 165 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~ 165 (532)
.+.-++..++.=+......+.--||..--...++..+.+..+..-=.=-+--++||++.|.+....|.+....+.+..-+
T Consensus 111 ~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~ 190 (432)
T PF06963_consen 111 ALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNL 190 (432)
T ss_pred HHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 33333333333334455556666775432212234445555555555667788999999999888888877776666555
Q ss_pred HHHHH
Q 009538 166 LSCAM 170 (532)
Q Consensus 166 l~~~~ 170 (532)
+.+.+
T Consensus 191 ~S~~v 195 (432)
T PF06963_consen 191 ASVFV 195 (432)
T ss_pred HHHHH
Confidence 55444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.037 Score=56.38 Aligned_cols=87 Identities=14% Similarity=-0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh
Q 009538 356 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 435 (532)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~ 435 (532)
+-++.|..+++++..++.=+. ...++...+..+++.+.|.+...++.+.++....|++.
T Consensus 79 ~gi~lgL~l~avg~~lF~pAa---------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 79 AGIVLGLLLYAVGAALFWPAA---------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhhh---------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh
Confidence 678889999888876654221 12456677778899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 436 RSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 436 rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
...-+.+...++.+|..++|.+.+.+..
T Consensus 138 a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 138 AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8889999999999999999999999876
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.93 Score=48.15 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHHHH-HhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCCCCCCCCCCCCC---
Q 009538 4 ITATTLINIFSGTTNFA-TLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA--AISKLHPPDCGNQDSGACPGP--- 77 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~-~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~--~~~~~~~~~~~~~~~~~~~~~--- 77 (532)
+...++.+...+.+.+. .++-+++++|+ +|++.+-+....|.+-.++.++.- .-..++|+.. .|-....-+
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~--~~~~~~~~~~~~ 119 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL--ADKLLSLLPPGF 119 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH--HHHHHhhcchhh
Confidence 45677777766666655 88889999995 999999998888888888777752 1011111100 000000000
Q ss_pred -------CchhHHHHHHHHHHHHHhcccccc-ccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc
Q 009538 78 -------TPWQLAFLFTGLGLMVIGAGGIRP-CNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ 148 (532)
Q Consensus 78 -------~~~~~~~l~~~r~l~G~g~g~~~p-~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~ 148 (532)
.++....+++.-=+- .-.... .--++..|.++.+|. .|.++++..+.|+|..+|+.+..++.
T Consensus 120 ~~~i~~~~~W~~~~FYv~~elw---~~~vvS~lFW~fandi~t~~qa------kRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 120 MGFIAILRIWSFALFYVMAELW---GSVVLSLLFWGFANQITTIDEA------KRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222222111 122222 455678898875432 34899999999999999998877765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=52.05 Aligned_cols=103 Identities=11% Similarity=0.121 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 009538 11 NIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLG 90 (532)
Q Consensus 11 ~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 90 (532)
++......+.+++...+.++. |.|+++.++.+.+.+-.+..-. ++.+.++.+-.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-------------------------~~~~~l~~~s~ 97 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-------------------------PNSYTLYPASA 97 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-------------------------hhHHHHHHHHH
Confidence 344555677888899999995 9999999999988865555433 25678999999
Q ss_pred HHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhh
Q 009538 91 LMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIV 145 (532)
Q Consensus 91 l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g 145 (532)
+.|+|.+......-.++.+..++ +.+++..+++....+.+.++|.++.-
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~------~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTE------ETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCH------HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986432 22334567777777777777755433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.36 Score=48.91 Aligned_cols=109 Identities=13% Similarity=-0.008 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCCCCCCC--
Q 009538 404 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA----STGDWLPED-- 477 (532)
Q Consensus 404 ~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~----~~~~~~~~~-- 477 (532)
..+..+.+.+...-......+++.++++|+..-|+.|.+.|....+|+.--..+..++.|..+-. .+.++....
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~~~t~~~~c~~~~ 450 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCVLATNKVTCITKA 450 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeeccccccceeeecch
Confidence 33445666666666666777899999999999999999999999998888788888887764310 001100000
Q ss_pred -------Cc---chhHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009538 478 -------LN---KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 512 (532)
Q Consensus 478 -------~~---~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~ 512 (532)
+. .-..+.+|....++.+++.+.+.++.++.++.+
T Consensus 451 ~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~Lq 495 (510)
T KOG3574|consen 451 FPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYLQ 495 (510)
T ss_pred HHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHHH
Confidence 00 001244566666666677666666666666554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0058 Score=63.73 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=92.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccC
Q 009538 353 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 432 (532)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P 432 (532)
+.++.+..|.++..++.+.++..+ ..+...+.+.++++++|.++.=+...+++.|.+|
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence 344788999999999988877631 1245567778888889999999999999999988
Q ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009538 433 EN--MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 510 (532)
Q Consensus 433 ~~--~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~ 510 (532)
++ .|-.+.++..+.-++|+.+++.+.+++.+.. ++...|.+.++-+.++++.+++..++.+.
T Consensus 148 ~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 148 KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 76 3566777788888899999999999987532 34567777777777777877777665554
Q ss_pred cC
Q 009538 511 KG 512 (532)
Q Consensus 511 ~~ 512 (532)
..
T Consensus 212 ~~ 213 (498)
T COG3104 212 IG 213 (498)
T ss_pred CC
Confidence 43
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.14 Score=49.45 Aligned_cols=93 Identities=18% Similarity=0.083 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccC
Q 009538 353 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 432 (532)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P 432 (532)
.+...+.+|.+...++..+...... +. ..+.+.|.+....++.+.+.....++......+.+|
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~--------~~---------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP 126 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVS--------GR---------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP 126 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh--------Cc---------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc
Confidence 3546777888888777766554421 10 122355555555566667777777777777889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 433 ENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 433 ~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
+ .||++.|+......+++.+-..+...+..
T Consensus 127 ~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 127 R-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred c-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 6 59999999999999999998888777653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.00037 Score=73.75 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=84.4
Q ss_pred HHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHH-HHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 009538 15 GTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLS-LTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMV 93 (532)
Q Consensus 15 ~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 93 (532)
+...++.+++.++.||+ |||+.++++..+.++..+.++ .....+. . ++..+...+....+...
T Consensus 297 ~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~~~~~~~~~~~~--------~-------~~~~~~~~i~~~~l~~~ 360 (451)
T PF00083_consen 297 LVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSLILGIIFFLGVS--------S-------SSWWSILSIVFLALFFA 360 (451)
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccc--------c-------ccccccccceeeeeccc
Confidence 33446777788999995 999999999999888887775 1110000 0 00012222222222211
Q ss_pred HhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHh
Q 009538 94 IGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 173 (532)
Q Consensus 94 ~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~~~~~ 173 (532)
.......+....+.+|.||.+ .|.+..++.+....++.++++.+...+.+..+-...|.+.+...++..++.+.
T Consensus 361 ~~~~g~~~~~~~~~~ElfPt~------~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 361 FFSLGWGPLPWIYTAELFPTK------VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred ccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 222233466778889999853 23457888778888899988888888877666344555555554445444444
Q ss_pred hcce
Q 009538 174 GSRL 177 (532)
Q Consensus 174 ~~~~ 177 (532)
..|+
T Consensus 435 ~lpE 438 (451)
T PF00083_consen 435 FLPE 438 (451)
T ss_pred EEee
Confidence 4444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=45.43 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=38.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHH
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVAS 45 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~ 45 (532)
+|+.+.+.+.++-.+...++++++|.++||+ ||+|.++....++
T Consensus 32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 4678999999999999999999999999996 9999888776654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0052 Score=64.44 Aligned_cols=129 Identities=10% Similarity=0.007 Sum_probs=102.2
Q ss_pred HHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcc
Q 009538 18 NFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAG 97 (532)
Q Consensus 18 ~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 97 (532)
.+.-++.++|..++ |+-+++.+++..+.+=.+...+.. |.|+.+.--+++|+-.|
T Consensus 420 I~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~------------------------n~W~vLPieilqgit~a 474 (618)
T KOG3762|consen 420 ILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ------------------------NPWMVLPIEILQGITHA 474 (618)
T ss_pred HHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc------------------------CchheeeHHHHHHHHHH
Confidence 34667788999996 999999999999998888888874 67888899999999999
Q ss_pred ccccccccccccCCCCCCCCcccchhhhhhhh-HHHHhHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHhhcc
Q 009538 98 GIRPCNLAFGADQFNPNTESGKQGITSFFNWY-YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSR 176 (532)
Q Consensus 98 ~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~-~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~~l~~~~~~~~~~ 176 (532)
.+..++.+|+++..||+-++ ++-++. ...-.+|--+|.++||.+.+.+|=|..|.+.++..++.++.+....+
T Consensus 475 liWaa~~sY~s~vaPp~l~a------t~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRA------TAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred HHHHHHHHHHHhhCCCcchH------HHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998864322 223222 23445677788888899999999999999988887777776655443
Q ss_pred e
Q 009538 177 L 177 (532)
Q Consensus 177 ~ 177 (532)
.
T Consensus 549 ~ 549 (618)
T KOG3762|consen 549 L 549 (618)
T ss_pred h
Confidence 3
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.024 Score=58.50 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=84.8
Q ss_pred HHHHHhHHHHHhhcc---ccchHHHHHH-HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 009538 17 TNFATLLGAFLSDTY---FGRYKTLGFA-SVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLM 92 (532)
Q Consensus 17 ~~~~~l~~G~laD~~---~Grr~~l~~~-~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 92 (532)
..+.+++-|..+||. |||||-++.. .....++.++..+++.+....-++.... ........++++--+.
T Consensus 80 G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~-------~~~rai~~~~lg~~LL 152 (498)
T KOG0637|consen 80 GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKP-------VKPRAIVLFILGFWLL 152 (498)
T ss_pred cceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccc-------cchHHHHHHHHHhHHH
Confidence 456788999999975 6998776654 4555667778888875543111111000 0113577788888888
Q ss_pred HHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhh
Q 009538 93 VIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 156 (532)
Q Consensus 93 G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~ 156 (532)
=+..-..+...-++++|...+.+.++ ++.+++..++.+|..+|+.++++ .+|+-.
T Consensus 153 D~A~n~~qgp~ra~L~Dl~~~d~~~~-----~Ans~f~~f~avGnvLGY~~g~y----~~~~~~ 207 (498)
T KOG0637|consen 153 DVANNTLQGPCRALLADLARGDAKKT-----RANSVFSFFMAVGNVLGYALGSY----LGLYKI 207 (498)
T ss_pred HhhhhhhhhhHHHHHHHhccChhhhh-----ccchhHHHHHHhcceeeeecccc----cCceEE
Confidence 88887777779999999876533222 27899999999999999888884 455543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0018 Score=69.98 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=2.9
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~ 464 (532)
..+.++...++.|+|.....+...+|+-|.++++..+.+.|+......+|..+|-.+.+.+++.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp ------------SSS-------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence 3566777889999999999999999999999999999999999999999999998888777643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.092 Score=57.83 Aligned_cols=109 Identities=10% Similarity=-0.004 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-CCCCCC-CCCC
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA-STGDWL-PEDL 478 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~ 478 (532)
.+..++...++.|+|.....+...+|+-|.+-++......|+.+....+|-++|-.+.+.+......- ..+.-+ ++|.
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 34456668899999999999999999999999999999999999999999998888887775442211 011111 1121
Q ss_pred cchhH-HHHHHHHHHHHHHHHHHHHHhhhccc
Q 009538 479 NKGRL-DYFYYLVAALGLLNFGFFLLCAKWYK 509 (532)
Q Consensus 479 ~~~~~-~~~~~~~~~~~vv~~~~~~~~~~~~~ 509 (532)
-+-+. ..-|++.+.+.++..+.++.+-++++
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 11122 22455555556666665555544444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.012 Score=60.65 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=93.2
Q ss_pred hhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcccc
Q 009538 320 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 399 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (532)
+....++.+++..+++++ .|+++|| ......++++.++.+..+... ++ .++
T Consensus 90 n~~A~vGti~GQl~FG~l----gD~~GRK-------~vYG~~liImIi~t~~~~~s~--------~~----------~~~ 140 (538)
T KOG0252|consen 90 NAAALVGTIFGQLFFGWL----GDKFGRK-------KVYGKELIIMIICSALSGLSV--------GT----------TSP 140 (538)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhhhcch-------hhhhHHHHHHHHHHHHhccCC--------CC----------CCC
Confidence 334455677777776665 7777777 344555566656555333221 01 122
Q ss_pred ch-HHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 009538 400 LS-GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478 (532)
Q Consensus 400 ~~-~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (532)
.+ .+|+...=+++|+|.+.=.|.+.+..+|.+-++.||.-.+.....+..|-..|..+.-.+...... -++..-
T Consensus 141 ~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~-----~~~~~~ 215 (538)
T KOG0252|consen 141 LGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK-----IFNGPS 215 (538)
T ss_pred cchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhc-----cCCCCC
Confidence 22 345555668999999999999999999999999999999888777777666666555444322211 111111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHh
Q 009538 479 NKGRLDYFYYLVAALGLLNFGFFLLC 504 (532)
Q Consensus 479 ~~~~~~~~~~~~~~~~vv~~~~~~~~ 504 (532)
...+.+.+|=+...++++-.+..+..
T Consensus 216 ~~~~ld~vWRl~~glg~vpa~~~ly~ 241 (538)
T KOG0252|consen 216 TYPHLDGVWRIIFGLGAVPALLVLYF 241 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12246777777666666665555444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.083 Score=41.69 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=51.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHh
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA 56 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~ 56 (532)
+|.++++|+.+.-++|+.++++...++.++. .+++.+..+.+...+..+.+++.+
T Consensus 24 ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 24 LSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999995 889999999999999999999985
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.12 Score=53.21 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCch-
Q 009538 356 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN- 434 (532)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~- 434 (532)
+.+.+|.++..+|.+++.+... +.. -.+..+.+.+.+.+.++++|.+..=|....+..|.++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~------~~~---------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAI------PPS---------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHT------SSS---------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHh------cch---------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4577788888888877555421 000 012334567778889999999999999999999998876
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009538 435 --MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511 (532)
Q Consensus 435 --~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~ 511 (532)
.|......+...-.+|..++..+.+++.+.. ++...|.+.++.++++.+.++...+.++.+
T Consensus 67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhhhHHHHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 4666777788888899999988888876422 356677777777777777666654444443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.34 Score=51.38 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=63.7
Q ss_pred hHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 009538 416 EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGL 495 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 495 (532)
.+.......+++++....+.|....|+.+.+.+.+..+++.+.+...... ++..++.+..+..+
T Consensus 126 ~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~----------------~~a~~f~ia~~~~~ 189 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL----------------GIALVFLIAAASGI 189 (463)
T ss_pred hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------------CchHHHHHHHHHHH
Confidence 33445667899999999999999999999999999999999998876532 34557777777777
Q ss_pred HHHHHHHHhhhcccccC
Q 009538 496 LNFGFFLLCAKWYKYKG 512 (532)
Q Consensus 496 v~~~~~~~~~~~~~~~~ 512 (532)
+..+..+++.+|.....
T Consensus 190 ~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 190 LSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHHHHHhhccccccCcc
Confidence 88888787777755443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.33 Score=51.26 Aligned_cols=90 Identities=20% Similarity=0.127 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhccc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF---PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 477 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~---P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
+.......+++..+|.++.....-+.+.|.. |++ +|..++.....+.+|+.++..+.|.+.+..+
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------- 152 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------- 152 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----------
Confidence 3444555667788888888888888887765 555 7889999999999999999999988876431
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 478 LNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
+...|.+.+.+.++..+..+....|
T Consensus 153 -----~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 153 -----PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred -----CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 2335555566666655555555444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.63 Score=48.30 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccchHH--HHHHHHHHHHHHhHhhhhhhhhhhhccc
Q 009538 354 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGL--WLIPQLSLIGFSEAFTIIAEVEFYYKQF 431 (532)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~l~~~g~~~~~~~~~~~~~~~~ 431 (532)
.+....+|..+..++..+-.+... +..+...+ .......+.++++.+......-....-+
T Consensus 108 LR~a~llgt~ln~iGa~Ir~iss~------------------p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF 169 (480)
T KOG2563|consen 108 LRTALLLGTVLNGIGAWIRLISSL------------------PFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF 169 (480)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccC------------------ccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC
Confidence 335677777777777655444310 01112333 4455666777777777655455666679
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009538 432 PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 465 (532)
Q Consensus 432 P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~ 465 (532)
|.+.|+.+..+..+.+.+|.+++..+-+.+....
T Consensus 170 ~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 170 PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred CcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 9999999999999999999999998888876543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.47 Score=51.22 Aligned_cols=144 Identities=9% Similarity=-0.045 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHH-HHHHHHHHHHH-HHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLG-FASVASFLGML-VLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~-~~~~~~~ig~i-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
.+.+.++++|.++..+++.++|+++++- -|+...+ +++.+.+..+. +...+..+.. ..
T Consensus 50 ~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~-------------------~~ 109 (521)
T PRK03612 50 TQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAFAFQG-------------------LS 109 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HH
Confidence 4567899999999999999999988553 3332221 11111111111 1111110000 01
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc-cccc-hhhhHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSW-AWGLGI 159 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~-~~gw-~~~F~v 159 (532)
...++...++.++-.|+..|....+..+... +..++..+..|....+|+++|.++.+++.- .+|- +..+.+
T Consensus 110 ~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-------~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~ 182 (521)
T PRK03612 110 RLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-------QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT 182 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1223444556777778888877766655311 011234777888899999999999888653 5664 444444
Q ss_pred HHHHHHHHHHHHHhh
Q 009538 160 PAFMMFLSCAMFFLG 174 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~ 174 (532)
..+-.+++++.++..
T Consensus 183 a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 183 GSLNLLAALVFLWLF 197 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.4 Score=39.20 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 461 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~ 461 (532)
+.+.+++.-++.|++.+..+++.-.++.+...++.+++..++.......+..+|..+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788889999999999999999999999999999999999888888888887665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=92.18 E-value=12 Score=39.80 Aligned_cols=62 Identities=8% Similarity=-0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhHhhhh-hhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 402 GLWLIPQLSLIGFSEAFTII-AEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 402 ~~~~i~~~~l~~~g~~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
.|.....|+...+....... ..|.++.|....+...+..++..+..++|..+++.+...+.+
T Consensus 128 ~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 128 IWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667666555554 789999999999999999999999999999999998888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.6 Score=45.56 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=86.6
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
......++.-++..|+++..+++--.|++||+ .-+..+.+..++++++.+...+...... ++-+.+.
T Consensus 71 ~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~~lg-------d~~~~~~ 137 (498)
T KOG0637|consen 71 IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGLLLG-------DNERKPV 137 (498)
T ss_pred ccccccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhHHhc-------CCccccc
Confidence 34456677777778888877666666666653 3456677777777777776543221111 2222234
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSI-GGSLAFVGFAISNYLNGFLIS 459 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~-~~gl~~~~~~ig~~l~~~~~~ 459 (532)
.+......++.+.+.-++.-....+.-++..|..-...+-+ +++.+.+...+|+.+|=...+
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 44555566667777778887888888899999876666666 999999999999998866654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=90.60 E-value=6.4 Score=38.03 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=37.0
Q ss_pred hhhhhhhHHHHhHHHHHHHHhhhhc---c--ccccchhhhHHHHHHHHHHHHHHHhhccee
Q 009538 123 TSFFNWYYFTFTFAMMISLTVIVYV---Q--SDVSWAWGLGIPAFMMFLSCAMFFLGSRLY 178 (532)
Q Consensus 123 ~~~~~~~~~~~~~G~~~g~~~~g~i---~--~~~gw~~~F~v~~~~~~l~~~~~~~~~~~~ 178 (532)
+.......++.|+|.++.-+..-.- . ..-.|++++.+.+++.++-++++.+..++.
T Consensus 5 ~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 5 SILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred ceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456667778889988775442222 1 123599999998888777777766655554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.27 E-value=4 Score=43.21 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=33.8
Q ss_pred hhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 418 FTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 418 ~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
.-..+.-.++.++..++.++-+.-.+...+.+|.+++-.+.-.+.+
T Consensus 134 TQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns 179 (544)
T PF13000_consen 134 TQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNS 179 (544)
T ss_pred cCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCC
Confidence 3344555667777777878888888888888888888777766654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=89.38 E-value=15 Score=38.66 Aligned_cols=60 Identities=7% Similarity=-0.047 Sum_probs=36.9
Q ss_pred hhhhccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 009538 425 EFYYKQF--PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGF 500 (532)
Q Consensus 425 ~~~~~~~--P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~ 500 (532)
+++..++ .++.....++..-=.-.+...++|.+.|.+.+.. ++.....++++++++....
T Consensus 134 DWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~----------------s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 134 DWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA----------------SPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred chhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------CHHHHHHHHHHHHHHHHHH
Confidence 4555555 3333445555554445559999999999997632 2344555666777766654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.86 E-value=3 Score=44.02 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhHH----HHH---hhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 9 LINIFSGTTNFATLLG----AFL---SDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 9 i~~~~~~~~~~~~l~~----G~l---aD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..++.++..++...+ +.+ .++ +||++++.++..+..++.++.-.+. |. +..-+|.....-...++
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~----dap~~~t~~~~~~~~~~ 352 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PN----DAPLRPTDSPPLLFTPS 352 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cc----cCCCCCCcccccccccc
Confidence 4455555555555543 344 466 4999999999999999888877652 21 11111112222233456
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhc
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 147 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i 147 (532)
...-++.-++.|++-++.....+.++++.+|. + +. .+++++-+--.++..++....+..
T Consensus 353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~---~~---~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 353 YYLALIIGFLLGFGDACFNTQRYVIIALLYPD-D---RA---QAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-c---hH---HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 66777788999999999999999999998842 2 11 356666555666665554444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.50 E-value=35 Score=34.66 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhh-----hcccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFY-----YKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRF 464 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~-----~~~~P~~~rg~~~gl~~-~~~~ig~~l~~~~~~~~~~~ 464 (532)
+.+.++..=++-|++..+.....-++. ...+|++..+...+... ..+.+-.++++.+...+.+.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 456666777788888877666544333 34467666666665554 44555566666666665543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.67 E-value=55 Score=35.09 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHH-HHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCCCCCCCCCCCCCCc--
Q 009538 5 TATTLINIFSGT-TNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTA--AISKLHPPDCGNQDSGACPGPTP-- 79 (532)
Q Consensus 5 ~~~~i~~~~~~~-~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~--~~~~~~~~~~~~~~~~~~~~~~~-- 79 (532)
....+.....+. ..+...+-.+++|++ +|.+++-+.+..+.....+.++-- +-..+|++....+|..- .+..
T Consensus 59 ~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~--~~~~~~ 135 (491)
T PF03219_consen 59 VIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAI--LPPGFK 135 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhh--ccchHH
Confidence 334444444443 445677889999996 999999988888888777777641 11124442222221100 0000
Q ss_pred --------hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc
Q 009538 80 --------WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 149 (532)
Q Consensus 80 --------~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~ 149 (532)
+.+..+++.-=+- |.-...-.=-++..|.++.+| -.+.+.++..+.|+|.+++..+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElw--gsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELW--GSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111111111 111111112455567665432 2358999999999999999888777765
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.39 E-value=21 Score=33.94 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCc-hhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-NMRSIGGSLAFV-GFAISNYLNGFLISMVHR 463 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~-~~rg~~~gl~~~-~~~ig~~l~~~~~~~~~~ 463 (532)
..+.++......+++.+...+....+..+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555668888888888999999999998 678888888877 577777888766666554
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.04 E-value=13 Score=30.51 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=32.7
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 009538 429 KQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 467 (532)
Q Consensus 429 ~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~ 467 (532)
+...++.++.++++-...-.+++.+..+++||+.|...+
T Consensus 33 ~~~a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 33 KSSAESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567789999999999999999999999999987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 532 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-14 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 1e-107 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 9e-10 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 328 bits (844), Expect = e-107
Identities = 101/519 (19%), Positives = 197/519 (37%), Gaps = 56/519 (10%)
Query: 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISK 60
++ A + + F F LLG +++D +FG+Y T+ + S+ +G L++
Sbjct: 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH--- 107
Query: 61 LHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQ 120
+ +TGL L+ +G+GGI+P +F DQF+ + +S Q
Sbjct: 108 --------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ 147
Query: 121 GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
F+ +YFT F + + + + A GIP +MF++ F+LG + Y
Sbjct: 148 ---KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIH 204
Query: 181 VKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLT-LHNHIPKNCINSKLPHTGQFRCLDKA 239
+ PE + V +A+ + + L + +P G L A
Sbjct: 205 MPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCA 264
Query: 240 AIMTPED-QIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF 298
++ + + V+ V+ ++R++ ++A ++ + Q +
Sbjct: 265 MVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWS--LFDQKASTW 322
Query: 299 QALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRM 358
LQ++ V A + L + + IP + ++ P ++R+ K +T L++M
Sbjct: 323 -ILQANDMVK--PQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKM 376
Query: 359 AIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAF 418
G+ + + I+ G I + S+LS W I +L+ F E
Sbjct: 377 GAGIAITGLSWIVVGTI---------------QLMMDGGSALSIFWQILPYALLTFGEVL 421
Query: 419 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 478
+EF Y Q P+ M+ S + + N V T + +
Sbjct: 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV---KSPTVTEQIVQTGM 478
Query: 479 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGA 517
+ F++ A +L F L A+ Y+ + A
Sbjct: 479 SVTAFQMFFF--AGFAILAAIVFALYARSYQMQDHYRQA 515
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPP 64
TA +++ I++ + +G F++D G + + V LG +VL+L
Sbjct: 55 TAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---------- 104
Query: 65 DCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS 124
P+ + LF + L++IG G ++P ++ + G
Sbjct: 105 --------------PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG--- 147
Query: 125 FFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAK 180
F+ + F I+ ++ Q + + A MF+ +++ G +
Sbjct: 148 -FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.92 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.8 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.82 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.74 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.53 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.5 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.37 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.29 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=260.39 Aligned_cols=408 Identities=16% Similarity=0.256 Sum_probs=262.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDT-YFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~-~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
+|..+.+++.+.+.++..++++++|+++|| + |||+++.++.++++++.+++++++
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~----------------------- 106 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPF----------------------- 106 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh-----------------------
Confidence 367889999999999999999999999999 7 999999999999999999998874
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
+++.++++|+++|+|.|...|+..++++|++|+++ +.|+..++.++...++|..+||.+++++.++.|||+.|++
T Consensus 107 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 107 -GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp -STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46679999999999999999999999999998533 3346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcceeeecC---CCCC-chhhHHHHHHH--------------HHHhcccCCCCCCcccccccCCcc
Q 009538 160 PAFMMFLSCAMFFLGSRLYAKVK---PEGS-PLASTVQVFVA--------------AIKKRHLKLPEEPWLTLHNHIPKN 221 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 221 (532)
.++..++..+.++...+++..++ ++.+ +..+..+.... ....+..+. ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~---------- 248 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL---PA---------- 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT---TH----------
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc---cc----------
Confidence 88877766666555444432211 1111 11111110000 000000000 00
Q ss_pred cccCCCCCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhh
Q 009538 222 CINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL 301 (532)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (532)
.................. ..|+.. .....++++......+++....++..+.+..+.......
T Consensus 249 ----------~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4aps_A 249 ----------YINLLTIVAIAIPVFYFA------WMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAA 311 (491)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH------HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHH
T ss_pred ----------chhhhhHHHHHHHHHHHH------HHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 000000000000000000 000000 000112334444445555555566665555443222211
Q ss_pred -ccCcccCCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009538 302 -QSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRR 380 (532)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 380 (532)
..+... ...+.....+.+..++..++.+++ .+|+++|+ ......+..++++.++++++........
T Consensus 312 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (491)
T 4aps_A 312 ERVDSSW------FPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY- 378 (491)
T ss_dssp HSCCCSS------SCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-
T ss_pred HHhccCc------cCHHHHhccchHHHHHHHHHHHHH----HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 112111 334556667777777777776665 67776663 3445667788888888877766543210
Q ss_pred hhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009538 381 SLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISM 460 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~ 460 (532)
....+.+.++.++.+++.+++.+...+..++++.|.+|++.||+++|+.+..+.+|+.+++.+.+.
T Consensus 379 --------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 379 --------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp --------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred --------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234677788888999999999999999999999999999999999999999999999999888
Q ss_pred hcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009538 461 VHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511 (532)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~ 511 (532)
+.+. ++...|..++++++++.+..++..++.+++
T Consensus 445 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 445 YNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp GGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred Hhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 134577777888887777777766655544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=260.49 Aligned_cols=449 Identities=21% Similarity=0.332 Sum_probs=258.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~-Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++.+.+++.+++.++..++++++|+++|| + |||+++.++.++++++.+++++++ .
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------------~ 107 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFE-----------------------H 107 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTS-----------------------S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhc-----------------------c
Confidence 57788999999999999999999999999 7 999999999999999999999874 1
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|+|.|...|+..+++.|++|+++ |..+...+++++...++|.++||.+++++.+..|||++|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 46789999999999999999999999999988533 222345677799999999999999999999889999999998
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhc
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (532)
++..++..+.++...++.+..+|++++..+..+.+....+++..+.+ .... .................+.........
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGL-VLALIGGVSAAYALVNIPTLGIVAGLC 262 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHH-HHHHHHHHHHHHTGGGTTTTCSSHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccch-hhhhhhhhhhhhhhcccchhhhhhhhh
Confidence 88776666655554444333223222211111111111111100000 0000 000000000000000000000000000
Q ss_pred cc-CCcccccCCCCCCCCCc-------cchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccc
Q 009538 241 IM-TPEDQIKSDGSAINPWR-------LSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHF 312 (532)
Q Consensus 241 ~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (532)
.. ....+. + ...+|. .+......+.|+.......+.....++..+.+..+.+..+....+... +
T Consensus 263 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 334 (524)
T 2xut_A 263 CAMVLVMGF-V---GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W 334 (524)
T ss_dssp HHHHHHHHH-H---HTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S
T ss_pred hhhhhhhcc-c---ccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e
Confidence 00 000000 0 000010 000001123444444444555555556665555554433333332211 1
Q ss_pred eeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccc
Q 009538 313 KIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQ 392 (532)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (532)
.+.+.....+.+..++..++.+++..|..+|.++| .++.+++.+|+++.+++++..+.....
T Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------- 396 (524)
T 2xut_A 335 -FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-------------- 396 (524)
T ss_dssp -SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT--------------
T ss_pred -ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 24566677778888888899888766666665433 445566777888877777665543100
Q ss_pred cCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 009538 393 RRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGD 472 (532)
Q Consensus 393 ~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 472 (532)
.+.....+.+++++.+++.+++++...+..++++.|.+|++.||+++|++++...+|+.+++.+.+.+.+..+ .+
T Consensus 397 -~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~ 471 (524)
T 2xut_A 397 -MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE 471 (524)
T ss_dssp -TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred -hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 0001124667778888999999999999999999999999999999999999999999999999998875321 01
Q ss_pred CCCC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009538 473 WLPE-DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 512 (532)
Q Consensus 473 ~~~~-~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~ 512 (532)
|.+. ..+ ...+.|++.+++.+++.+.++++.++.+++.
T Consensus 472 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 472 QIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHSC--HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1100 000 0122366777777777777666666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=261.33 Aligned_cols=421 Identities=12% Similarity=0.064 Sum_probs=233.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC--Cch
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP--TPW 80 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~ 80 (532)
+.+.++++++|.++..++++++|+++||+ |||++++++.+++++++++++++........ ...... -.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~--------~~~~~~~~~a~ 124 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN--------PDNTVPVYLAG 124 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS--------SSSSCCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------chhHHHHHHhh
Confidence 34678999999999999999999999996 9999999999999999999997532110000 000000 014
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc--------ccc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS--------DVS 152 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~--------~~g 152 (532)
|+..++++|+++|+|.|...+..+.+++|+.|+ +.|++..+.++....+|.++++.++..+.. ..+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 788999999999999999999999999999874 334668889999999999999888776543 245
Q ss_pred chhhhHHHHHHHHHHHHHHHh--hcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCC
Q 009538 153 WAWGLGIPAFMMFLSCAMFFL--GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 230 (532)
Q Consensus 153 w~~~F~v~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (532)
||+.+.+..+..++.++..+. .+|++...+.+.++..+..+. ...+..... +.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~---~~~~~~~~~----~~------------------ 253 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK---IMGNTLATQ----AV------------------ 253 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH---HHHHHHHHH----HH------------------
T ss_pred hHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH---hcCCchhHH----HH------------------
Confidence 777777766654444433222 233333333332222222211 111000000 00
Q ss_pred CcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCc
Q 009538 231 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 310 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (532)
.+..... ...++ .. ........++......... +..+........+. .......+
T Consensus 254 -----~~~~~~~---~~~~~-~~--------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~-- 308 (491)
T 4gc0_A 254 -----QEIKHSL---DHGRK-TG--------GRLLMFGVGVIVIGVMLSI-----FQQFVGINVVLYYA-PEVFKTLG-- 308 (491)
T ss_dssp -----HHHHHHH---HHHHH-HT--------THHHHSCCTHHHHHHHHHH-----HHHHTCHHHHHHHH-HHHHHHSS--
T ss_pred -----HHHHHHH---Hhhhh-hh--------hHHHHhcccHHHHHHHHHH-----HHHHhhhhHHHhcc-hHHHHhcC--
Confidence 0000000 00000 00 0000000111111111000 00000000100000 00000111
Q ss_pred cceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcc
Q 009538 311 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 390 (532)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (532)
..............+..++...+ ...+.+|++|| +.+..+...++++++..+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~------------- 364 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVL----AIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFY------------- 364 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred CCccchhhHHHHHHHHHHHHHHH----HHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHh-------------
Confidence 00000111112222222232232 22336666665 5666677777777666554422
Q ss_pred cccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 009538 391 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST 470 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 470 (532)
....+...++..+++.........+..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.+...
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~---- 434 (491)
T 4gc0_A 365 ------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW---- 434 (491)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH----
T ss_pred ------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0112222223333333333334456778999999999999999999999999999999999887754210
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcccccccccCCC
Q 009538 471 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPE 528 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (532)
.. ...+..+.|++++++++++.++.+++.||+|+|+.||.++.+++++.+++
T Consensus 435 ---~~---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 435 ---LV---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp ---HH---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred ---HH---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 00 00012356788899999999999999999999999988777665554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=236.05 Aligned_cols=367 Identities=11% Similarity=-0.024 Sum_probs=230.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH----HhhcccCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL----TAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~----a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
+++.+.+++.+++.++..++++++|+++||+ |||++++++.++++++.+++++ +.
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 117 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------------------- 117 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc--------------------
Confidence 3678899999999999999999999999996 9999999999999999999999 64
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chh
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAW 155 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~ 155 (532)
+++.++++|+++|++.|...|...+++.|++|+ ++|++.+++++...++|.++||.+++++.+..| ||+
T Consensus 118 ----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~ 187 (451)
T 1pw4_A 118 ----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA 187 (451)
T ss_dssp ----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTT
T ss_pred ----cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 466899999999999999999999999999874 234668999999999999999999999888888 999
Q ss_pred hhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccc
Q 009538 156 GLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRC 235 (532)
Q Consensus 156 ~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (532)
.|++.++..++..+..+...|+.++.+...+ .++..+. .+.+.+
T Consensus 188 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~--~~~~~~--------------- 231 (451)
T 1pw4_A 188 ALYMPAFCAILVALFAFAMMRDTPQSCGLPP-------------------IEEYKND--YPDDYN--------------- 231 (451)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-------------------CTTTCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-------------------hhhhccc--ccccch---------------
Confidence 9999888766655544444443211110000 0000000 000000
Q ss_pred hhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhh-HhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee
Q 009538 236 LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI 314 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
+ +..+...++..........+.+... +..++....+....... + .......+ .-..
T Consensus 232 ----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~g--~~~~ 288 (451)
T 1pw4_A 232 ----------E----KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS-P------TYLKEVKH--FALD 288 (451)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH-H------HHBTTBSC--CCHH
T ss_pred ----------h----hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHhcC--CCHH
Confidence 0 0000000000000000001111111 11111111111111111 1 11111122 0001
Q ss_pred ChhhhhhhhhhhhHhHHhhhccchhhhcccc--ccCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCccc
Q 009538 315 PAASYAIFSMLGLTIWIPIYDRIIVPRLQRL--TKKEGGITILQRMAIGMILAI-FTMIISGIIEDKRRSLALSRPVGLE 391 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (532)
..+.......++.+++.++.+++ .+|+ ++| +.+..+..+.. ++++.....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---------------- 341 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIPGTLLCGWM----SDKVFRGNR-------GATGVFFMTLVTIATIVYWMN---------------- 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHTSTTCH-------HHHHHHHHHHHHHHHHHTTSC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHh----------------
Confidence 12233444445555555554443 5554 332 34444444443 444333321
Q ss_pred ccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCCCC
Q 009538 392 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAI-SNYLNGFLISMVHRFTKGAST 470 (532)
Q Consensus 392 ~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i-g~~l~~~~~~~~~~~~~~~~~ 470 (532)
...+.+..+...++.+++.....+..+.++.|.+|++.||+++|+.+....+ |..+++.+.+.+.+..
T Consensus 342 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----- 410 (451)
T 1pw4_A 342 ------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----- 410 (451)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----
T ss_pred ------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 1124566666777788888888888889999999999999999999999999 9999999999998753
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 471 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
++...|+..+++.+++.+..+...+
T Consensus 411 -----------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 411 -----------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp -----------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456777777777777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=216.81 Aligned_cols=321 Identities=12% Similarity=0.055 Sum_probs=204.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL---SLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~---~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+++.+.+++.+.+.++..++.+++|+++||+ |||++++++.++++++.+++ ++++
T Consensus 58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~--------------------- 115 (438)
T 3o7q_A 58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM--------------------- 115 (438)
T ss_dssp CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc---------------------
Confidence 3678899999999999999999999999996 99999999999999999999 5543
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-cccc----
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVS---- 152 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-~~~g---- 152 (532)
+++.++++|+++|+|.|...|...++++|++|++ +|++.+++++...++|.++||.+++++. +..+
T Consensus 116 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 116 ---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred ---cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 6889999999999999999999999999998752 3355799999999999999999999988 5554
Q ss_pred ---------------------chhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCc
Q 009538 153 ---------------------WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPW 211 (532)
Q Consensus 153 ---------------------w~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (532)
||+.|++.++..++..+.++.. +.++.+++.+ ++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~---------------------~~~~ 243 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--KFPALQSDNH---------------------SDAK 243 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCTTTCC---------------------CCSS
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--cCCccccccc---------------------cccc
Confidence 9999987666544444433321 1111110000 0000
Q ss_pred ccccccCCcccccCCCCCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhh-hHhHHHHHHHHHHHhc
Q 009538 212 LTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALV 290 (532)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 290 (532)
+ + .... ++ ++..+ .+.+.. .+..++..........
T Consensus 244 -------------~-----~-~~~~--------------------~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T 3o7q_A 244 -------------Q-----G-SFSA--------------------SL----SRLAR-IRHWRWAVLAQFCYVGAQTACWS 279 (438)
T ss_dssp -------------T-----T-SHHH--------------------HH----HHHTT-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------c-----c-chhh--------------------hH----HHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 00 00000 111111 1111112221222211
Q ss_pred ccchhhhhhhhccCcccCCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 009538 291 QQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMI 370 (532)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~ 370 (532)
+.+.++..+....+.. ..+.......++.+++.++..++ .+|+++| +.+..+.++..++++
T Consensus 280 ~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~g~l----~~r~~~~-------~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAG--------FAANYLTGTMVCFFIGRFTGTWL----ISRFAPH-------KVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHSTTCCHH--------HHHHHHHHHHHHHHHHHHHHHHH----HHHSCHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCcchh--------HHHHHHHHHHHHHHHHHHHHHHH----HHHhcch-------HHHHHHHHHHHHHHH
Confidence 1222201111111111 12233333444445555554443 5555443 566667766666655
Q ss_pred HHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009538 371 ISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAIS 450 (532)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig 450 (532)
..... .+. +.+..+++.+++.+...+..+++..|.+|++ ++.+.++.. .+.++
T Consensus 341 ~~~~~------------------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 341 ISAFA------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHC------------------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHc------------------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 54432 122 3344557778888888899999999999988 899999887 67799
Q ss_pred HHHHHHHHHHhcccc
Q 009538 451 NYLNGFLISMVHRFT 465 (532)
Q Consensus 451 ~~l~~~~~~~~~~~~ 465 (532)
+.+++.+.+.+.|..
T Consensus 394 ~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=205.38 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=122.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++++++|+++||+ |||+++.++..+..++.+++++++ +
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------~ 87 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS------------------------S 87 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH------------------------H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc------------------------c
Confidence 577899999999999999999999999996 999999999999999999999985 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|+++|++.+...|...+++.|++|+++ |++.++.+....++|..+||.+++++.++.|||+.|++.+
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 7789999999999999999999999999987532 2357999999999999999999999999899999999877
Q ss_pred HHHHHHHH
Q 009538 162 FMMFLSCA 169 (532)
Q Consensus 162 ~~~~l~~~ 169 (532)
+..++..+
T Consensus 162 ~~~~~~~~ 169 (375)
T 2gfp_A 162 VLCAGVTF 169 (375)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 76554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-20 Score=193.76 Aligned_cols=357 Identities=10% Similarity=0.026 Sum_probs=191.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL---SLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~---~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+|+.+.+++.+.+.++..++++++|+++||+ ||||+++++..+++++...+ +++....
T Consensus 40 ~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------ 100 (417)
T 2cfq_A 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLLQ------------------ 100 (417)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHHHH------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 3677899999999999999999999999996 99999999998887643222 2222100
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
..++.++++.+++.|...+.......++.++ .+ +.++..++......++|..++|.+++++.+ .+||+.|
T Consensus 101 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f 170 (417)
T 2cfq_A 101 -----YNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VS---RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp -----TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HH---HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hh---hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence 0134456666655555444444444443221 01 122344566666778899999999999876 6899999
Q ss_pred HHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchh
Q 009538 158 GIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (532)
++.++..++..+..+...|+ +++..+ .++.+ + .+ .++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~~~----------~---~~---~~~~---- 208 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTD----APSSAT------------------VANAV----------G---AN---HSAF---- 208 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSSSS----------S---SC---CCCC----
T ss_pred HHHHHHHHHHHHHHHHcCcc----cccccc------------------ccccc----------c---cc---cccc----
Confidence 98766533332222111111 100000 00000 0 00 0000
Q ss_pred hhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhH-HHHHHHHHHHhcccchhhhhhhhccCc-ccCCccceeC
Q 009538 238 KAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPI-WASAIVYYVALVQQQTYVVFQALQSDR-RVGNTHFKIP 315 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 315 (532)
+++. ..+..++ +........ +.....+....++.+.++ .. .... ..+ ...
T Consensus 209 -------------------~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~----~~~ 260 (417)
T 2cfq_A 209 -------------------SLKL-ALELFRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFF-TS--FFATGEQG----TRV 260 (417)
T ss_dssp -------------------CHHH-HHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--TSSSHHHH----THH
T ss_pred -------------------cHHH-HHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHH-HH--HHhccCCC----hhH
Confidence 0000 0000011 111111111 111111111111111111 11 0110 000 000
Q ss_pred hhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCC
Q 009538 316 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 395 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (532)
.+.....+.+..+++..+.+++ .||+++| +.+..+..+.+++++..+..
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~l~~~~~~~~~~~~~~~~~-------------------- 309 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLI----INRIGGK-------NALLLAGTIMSVRIIGSSFA-------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHCHH-------HHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhcHH-------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 1222333333444444443333 5665544 45556666665554443321
Q ss_pred ccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 009538 396 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWL 474 (532)
Q Consensus 396 ~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 474 (532)
.+.+.++...++.+++.....+..+.++.|.+|++.||++.++ ++..+.+|+.+++.+.|.+.+..
T Consensus 310 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------- 376 (417)
T 2cfq_A 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------- 376 (417)
T ss_dssp ----CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------
Confidence 2344555555566666666666778899999999999999999 48888999999999999887632
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 475 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++...|...+++.+++.+..++..++
T Consensus 377 -------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 377 -------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred -------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35567777777777776665544443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-09 Score=107.67 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=118.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccc--cchHHHHHHHHHHH-HHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYF--GRYKTLGFASVASF-LGMLVLSLTAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~--Grr~~l~~~~~~~~-ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
++.+.+++.+.+.++..++.+++|+++|| + |||+.+.++..+.. ++.++..+..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 343 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPA--------------------- 343 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCT---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 56778899999999999999999999999 8 99999988877776 55555544321
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhH-HHHHHHHhhhhccccccchhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~-G~~~g~~~~g~i~~~~gw~~~F 157 (532)
.+...+++..++.|++.+...+....++.|.+|+ +.+++.++++....++ |..++|.+.|++.+..||++.|
T Consensus 344 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 344 -GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp -TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred -cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 2466778888899999999888888999998874 2346789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009538 158 GIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~ 174 (532)
++.++..+++.+..+..
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888776666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-09 Score=109.98 Aligned_cols=137 Identities=7% Similarity=0.010 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.+.+.+...++..++.+++|+++||+ |||+++..+..+.+++.++.++++ +...+
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~~ 315 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------------SALEV 315 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC------------------------SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc------------------------cHHHH
Confidence 35555566667778899999999995 999999998888888766665542 34567
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHH
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMM 164 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~ 164 (532)
++..++.+++.+...+....++.|.+|+ +.|++..+. +.....+|..+||.++|++.++.|++..|.+.++..
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 7777788888777777778899998874 334556666 466778999999999999988889999999887776
Q ss_pred HHHHHHHHh
Q 009538 165 FLSCAMFFL 173 (532)
Q Consensus 165 ~l~~~~~~~ 173 (532)
+++.++.+.
T Consensus 390 l~~~~~~~~ 398 (417)
T 2cfq_A 390 LGFTLISVF 398 (417)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 666655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-08 Score=101.37 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=106.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+++++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++..+.+ +
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 347 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG------------------------G 347 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCC------------------------H
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHcC------------------------C
Confidence 567788999999999999999999999995 999999999999999988887764 2
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v~ 160 (532)
... ++.-++.|++.+...|...++..|.+|++ + +...++.. ...+|..++|.+.|++.+..| ++..|++.
T Consensus 348 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 348 HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD--T-----KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG--H-----HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc--c-----cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 223 33448889999999999999989988742 1 22344433 667999999999999999888 99999987
Q ss_pred HHHHHHHHH
Q 009538 161 AFMMFLSCA 169 (532)
Q Consensus 161 ~~~~~l~~~ 169 (532)
++..++..+
T Consensus 419 ~~~~~~~~~ 427 (438)
T 3o7q_A 419 ALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.9e-07 Score=92.58 Aligned_cols=139 Identities=13% Similarity=0.132 Sum_probs=103.3
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccc-cccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
.......++..++.++.+++ .|| +++| +.+..+.++.+++.++....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l----~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFV----ADRIIGAR-------PAVFWGGVLIMLGHIVLALP--------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHTSCHH-------HHHHHHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhccccch-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 44455556666666665554 777 5665 67777888877777665532
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 474 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~--rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 474 (532)
.+.+.++...++.|++.+...+...+++.|.+|++. |+.+.++.+....+|..+++.+.+.+.+..
T Consensus 106 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------- 173 (491)
T 4aps_A 106 ---FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--------- 173 (491)
T ss_dssp ---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 356777788889999999999999999999999988 888888899999999999999999987632
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 475 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++.+.|++.++..+++.+.+++..++
T Consensus 174 -------g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 174 -------GYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 24567777666666666655554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-07 Score=92.62 Aligned_cols=146 Identities=12% Similarity=-0.002 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH-
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA- 83 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (532)
..........+...++.++++++.||+ |||+.++.+.....++.+..+...... ..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~ 372 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------------------APGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT-------------------CCHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc-------------------cchHHH
Confidence 334445556677788999999999996 999999999999998887776653211 01222
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc------cccchhhh
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------DVSWAWGL 157 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~------~~gw~~~F 157 (532)
.+.+.-+..+++. ...|....+.+|.||. +.|++..++.....++|.++++.+.+.+.+ ..++.+.|
T Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 373 LLSMLFYVAAFAM-SWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHSSCT------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHhCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2222222333333 3456777899999985 344678888888889999998888776643 34566778
Q ss_pred HHHHHHHHHHHHHHHhhcce
Q 009538 158 GIPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~ 177 (532)
++.+++.++..++.++..|+
T Consensus 446 ~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHheecC
Confidence 88777777776666666665
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.8e-07 Score=89.46 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=87.2
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..++.++.+++ .||+++| +.+..+..+.+++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 85 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTT---------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence 34455555666666665554 7777766 34556777777776666654
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
.+.+.++...++.|++.+...+....++.|.+|++.|++++++.+....+|..+++.+.+.+.+
T Consensus 86 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 86 --SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2567777788899999999999999999999999999999999999999999999999998865
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.7e-06 Score=87.55 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=96.4
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhcccc-ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
.......++..++.++.+++ .||+ ++| +.+.++.++.+++.++....
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l----~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWI----ADRFFGKY-------NTILWLSLIYCVGHAFLAIF--------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHH----HTTSSCSH-------HHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhcch-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34444555556666664444 6665 544 56777887777777666543
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL---AFVGFAISNYLNGFLISMVHRFTKGASTGDW 473 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 473 (532)
+.+.+.++...++.|++.+...+...+++.|.+|++.|++..+. .+....+|..+++.+.+.+.+..
T Consensus 106 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 106 --EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp --SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred --cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 12567777788899999999999999999999999999876666 88888999999998888876532
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009538 474 LPEDLNKGRLDYFYYLVAALGLLNFGFFLL 503 (532)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~ 503 (532)
++.+.|++.+++.++..+..+.
T Consensus 176 --------g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 --------GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHH
Confidence 2456677666666555554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.63 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.6e-25 Score=230.75 Aligned_cols=150 Identities=15% Similarity=0.031 Sum_probs=127.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|++|.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.++++++.... .
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 114 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------------------S 114 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------------------S
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------------------h
Confidence 4678999999999999999999999999996 999999999999999999999875433 2
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccc-ccchhhhHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI 159 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~-~gw~~~F~v 159 (532)
++..+++.|+++|++.|...|....+++|++|+ ++|++.++++..+.++|.+++|.+++.+... .+||+.|++
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh------hcccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 567899999999999999999999999999875 2346789999999999999999988876554 589999999
Q ss_pred HHHHHHHHHHHHHhhcce
Q 009538 160 PAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~ 177 (532)
.++..++..++.+...++
T Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 189 PAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred hhhhHHHHHHHHHHhccc
Confidence 887766665555554444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.7e-21 Score=193.79 Aligned_cols=364 Identities=9% Similarity=-0.022 Sum_probs=208.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
+|+.+.+++.+++.++..++++++|+++||+ ||||+++++..+..++.+++.+..+.+.
T Consensus 40 ~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 98 (417)
T d1pv7a_ 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL-------------------- 98 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHHTHHHH--------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHhhhhhh--------------------
Confidence 4688999999999999999999999999996 9999999999999999999888753221
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
.....++.+.+.+.+.+...+.......+..++ +.+.+....+........|..++|.+++++.+ .+|++.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 173 (417)
T d1pv7a_ 99 LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK----VSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLG 173 (417)
T ss_dssp HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH----HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccchhhcccccccc----hhhhhHHHHHHHhhhhcccccccccccccccc-ccccccccch
Confidence 223345556665555555554444444333221 11222345667777888999999999999876 4555555555
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhc
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (532)
.....+..+..+...++.+..+++.++. +.. .+ ......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~------------------------~~~~~~--- 212 (417)
T d1pv7a_ 174 SGCALILAVLLFFAKTDAPSSATVANAV-------------GAN-HS------------------------AFSLKL--- 212 (417)
T ss_dssp HHHHHHHHHHHHSSCCCSCSSSCSSHHH-------------HSC-CC------------------------CCCHHH---
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhh-------------hhh-cc------------------------cccccc---
Confidence 5444444343343333321111110000 000 00 000000
Q ss_pred ccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccceeChhhhh
Q 009538 241 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 320 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
........+...................... .. .......+...+ ........
T Consensus 213 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~----~~~~~~~~ 265 (417)
T d1pv7a_ 213 ---------------------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQF-AN-FFTSFFATGEQG----TRVFGYVT 265 (417)
T ss_dssp ---------------------HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH-HH-HHTTSSSCHHHH----HHHHHHHH
T ss_pred ---------------------cccccccccccchhhhhHHHHHHHHhhhccc-cc-cccccccccccc----hhhhcccc
Confidence 0000000000000111111111111111000 00 000000000000 00111222
Q ss_pred hhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCccccc
Q 009538 321 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
....++..+...+.++ +.+|.+ +.+.+..+.++.+++.+..... .
T Consensus 266 ~~~~~~~~~~~~~~~~----l~~r~~-------~~~~~~~~~~~~~~~~~~~~~~------------------------~ 310 (417)
T d1pv7a_ 266 TMGELLNASIMFFAPL----IINRIG-------GKNALLLAGTIMSVRIIGSSFA------------------------T 310 (417)
T ss_dssp HHHHHHHHHHHTTHHH----HHHHHC-------HHHHHHHHHHHHHHHHHHHHTC------------------------C
T ss_pred cccccccccchhhhhh----hhcccc-------cccchhhhHHHHHHhhhccccc------------------------c
Confidence 2333333344444333 345443 3366777777777666655532 3
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 009538 401 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 479 (532)
Q Consensus 401 ~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (532)
+.+..+...++.+++.+...+..++++.|.+|++.|+++.++. ++.+.+|..+++.+.|.+.|..
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-------------- 376 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 5677777888899999999999999999999999999999985 5677899999999999998754
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009538 480 KGRLDYFYYLVAALGLLNFGFFLLCAKWYK 509 (532)
Q Consensus 480 ~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~ 509 (532)
++...|++.+++.++..+..++..++.+
T Consensus 377 --g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 377 --GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3566788888888777776666655444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1e-09 Score=108.52 Aligned_cols=141 Identities=7% Similarity=-0.017 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH
Q 009538 4 ITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA 83 (532)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (532)
...+.......++..++.++.|++.||+ |||+++.++..+.+++.++..+.+ +.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 313 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------------SAL 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC------------------------CHH
T ss_pred hhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc------------------------ccc
Confidence 3456667777788889999999999996 999999999999999988888764 567
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhh-HHHHhHHHHHHHHhhhhccccccchhhhHHHHH
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY-YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 162 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~-~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~ 162 (532)
.+++.-++.|++.+...|...+++.|.+|+ +.|++.++.. .....+|..++|.+.|++.+..||++.|++.++
T Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~ 387 (417)
T d1pv7a_ 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCG------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 788899999999999999999999999874 2345677764 456679999999999999999999999998877
Q ss_pred HHHHHHHHHHhhc
Q 009538 163 MMFLSCAMFFLGS 175 (532)
Q Consensus 163 ~~~l~~~~~~~~~ 175 (532)
..++..++.++..
T Consensus 388 ~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 388 VALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 6666555544443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=1.6e-07 Score=94.27 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=102.9
Q ss_pred hhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 317 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
+.......++..++.++.+++ .||+++| +.+..+.++.+++.++.+....
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l----~Dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~------------------- 111 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSV----SDRSNPR-------VFLPAGLILAAAVMLFMGFVPW------------------- 111 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHSCHH-------HHHHHHHHHHHHHHHHHHHCHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHcCch-------HHHHHHHHHHHHHHhhccccch-------------------
Confidence 444555566666666664444 7776665 6778888888888777665421
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 476 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 476 (532)
...+.++++...++.+++.+...+....++.|.+|++.|++++++.+....+|..+++.+.+.+....+ +|
T Consensus 112 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~w--- 182 (447)
T d1pw4a_ 112 -ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW--- 182 (447)
T ss_dssp -HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS---
T ss_pred -hhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh-----cc---
Confidence 123566777788899999999999999999999999999999999999999999999988777654321 12
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 477 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
.+.|+..+.+.++..+..+...++
T Consensus 183 -------~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 183 -------HAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp -------TTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred -------cccchhhhhhHHHHHHHHHHhccc
Confidence 234555555665555555555443
|