Citrus Sinensis ID: 009546

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
cccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHccccccccccHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHccccEEEEEEccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcEEccccccccEEEEEEcccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHcccHHHHHHHHccEEEEcccccccccHHHHHHHHHHHccccccccEEEcccccccccccEEEcEEEcccccccccccccHHHHHHHccccccccccccccccccEEEEcccc
cccccccccccHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccEEEcHcccccccccccccHHcccccccccccEccccccccEEEccccccccccccccHHHHHHcccccEEEEccccccEEEccccccHHHHHHHHHHHHHHHHHHHHcccHHHHccccEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccEEEEccccccccHHHccHHHHcHccccccccccccccccccccHEEcccccEEEEcccccccEEcccccHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEcHHHHHHHHHHHHHHHcHHHHHHccccEEEcccccccHHHHHHHHHHHcc
MLNSQVTTSQHVERERAYDVIASLMkipfldeevannsfprkmgrvdafnqqnsrkdvafswtnvyekepmpstalessssmnhgiikesmgqhrntdikELNSSERKFREFicgeealrvsptepycihrpirrghlnisqhypmQQVLEDLYAIWDWILTeklhiprserNLYSAILVlpesfdnrEIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVedgvalpntektlpfggedisrCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHsyedgmppgshktrlialnvppmglfypkllvpdvypppprswfndyedmledtwhtdfprrsdisdnfypginvglpmwesypvlttkpkkeekigLAEAVTSSILSTGRIDLQRKLFCSIQLIGgvaltgglipaveervlhaipsneaIDMVEVLQsrtnptyvswkggavLGILDFGRDAWIHREDwirngihigsgrkykdsYFLQAQAMCYINS
mlnsqvttsqhvererAYDVIASLMKIPFLDEEVANNSFPRKMGrvdafnqqnsrkdVAFSWTNVYEKEPMPSTALESSSSMNHGIIKesmgqhrntdIKELNSSERKFREFIcgeealrvsptepyCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIrngihigsgrkYKDSYFLQAQAMCYINS
MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
****************AYDVIASLMKIPFLDEEVA**********************VAFSWTNV*******************************************FREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYI**
******************DVIASLMKI********************************FSWTNVYEKEPMPSTALESSSS************************ERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDIS**F*****************TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS*E******VLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
************ERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKE***********SMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
***S*V*TSQHVERERAYDVIASLMKIPFLDEEVANNSFP*************SRKDVAFSWTNVYEK***********SSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY*********DY*DMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
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MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query532 2.2.26 [Sep-21-2011]
Q9LSW2596 Actin-related protein 9 O yes no 0.977 0.872 0.631 0.0
A2XQX0586 Actin-related protein 9 O N/A no 0.973 0.883 0.617 0.0
Q0JF03586 Actin-related protein 9 O yes no 0.973 0.883 0.617 0.0
P59679623 Actin-related protein 8 O yes no 0.766 0.654 0.276 2e-46
D2I1E3624 Actin-related protein 8 O yes no 0.419 0.357 0.389 5e-39
Q1LZF2624 Actin-related protein 8 O yes no 0.419 0.357 0.389 5e-39
Q8R2S9624 Actin-related protein 8 O yes no 0.419 0.357 0.393 5e-39
Q9H981624 Actin-related protein 8 O yes no 0.419 0.357 0.380 3e-38
Q9US07662 Probable actin-related pr yes no 0.719 0.578 0.288 3e-38
Q0IEG8562 Actin-related protein 8 O N/A no 0.701 0.663 0.265 3e-38
>sp|Q9LSW2|ARP9_ARATH Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1 Back     alignment and function desciption
 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/532 (63%), Positives = 415/532 (78%), Gaps = 12/532 (2%)

Query: 1   MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDVA 59
           MLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD  
Sbjct: 75  MLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDSV 134

Query: 60  FSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEAL 119
           F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEAL
Sbjct: 135 FTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEAL 193

Query: 120 RVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAIL 179
           ++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A++
Sbjct: 194 KISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAVI 253

Query: 180 VLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICV 239
           V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+CV
Sbjct: 254 VVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVCV 313

Query: 240 EDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 299
           EDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES+CE
Sbjct: 314 EDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKESFCE 373

Query: 300 IKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDY 359
           I+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF DY
Sbjct: 374 IRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQDY 433

Query: 360 EDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 419
           E+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSIL
Sbjct: 434 ENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSIL 483

Query: 420 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYV 479
           S GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P +V
Sbjct: 484 SAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFV 543

Query: 480 SWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 531
           +WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct: 544 TWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595

Arabidopsis thaliana (taxid: 3702)
>sp|A2XQX0|ARP9_ORYSI Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2 Back     alignment and function description
>sp|Q0JF03|ARP9_ORYSJ Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1 Back     alignment and function description
>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 Back     alignment and function description
>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 Back     alignment and function description
>sp|Q9US07|ARP8_SCHPO Probable actin-related protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.02c PE=1 SV=2 Back     alignment and function description
>sp|Q0IEG8|ARP8_AEDAE Actin-related protein 8 OS=Aedes aegypti GN=Arp8 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
255576846589 conserved hypothetical protein [Ricinus 0.990 0.894 0.815 0.0
296083596632 unnamed protein product [Vitis vinifera] 0.996 0.838 0.800 0.0
225433003602 PREDICTED: actin-related protein 9-like 0.996 0.880 0.800 0.0
449432582599 PREDICTED: actin-related protein 9-like 0.992 0.881 0.774 0.0
356533797591 PREDICTED: actin-related protein 9-like 0.994 0.895 0.751 0.0
356576460589 PREDICTED: actin-related protein 9-like 0.990 0.894 0.740 0.0
449526595512 PREDICTED: actin-related protein 9-like, 0.842 0.875 0.775 0.0
297795073596 hypothetical protein ARALYDRAFT_494650 [ 0.977 0.872 0.640 0.0
26450570584 putative actin [Arabidopsis thaliana] 0.977 0.890 0.631 0.0
15239891596 actin-related protein 9 [Arabidopsis tha 0.977 0.872 0.631 0.0
>gi|255576846|ref|XP_002529309.1| conserved hypothetical protein [Ricinus communis] gi|223531233|gb|EEF33078.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/532 (81%), Positives = 485/532 (91%), Gaps = 5/532 (0%)

Query: 1   MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAF 60
           MLNSQVTT+QH+ERE+AYD+IAS +KIPFLDEEVANNSFPRK+GRVD FN Q+ RKDVAF
Sbjct: 63  MLNSQVTTAQHMEREKAYDIIASYLKIPFLDEEVANNSFPRKIGRVDGFNPQSGRKDVAF 122

Query: 61  SWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALR 120
           +WTNVYE++   S++L S    N G I  S+ +  +TD K    S  K+R FICGEEAL+
Sbjct: 123 TWTNVYEQDT--SSSLASERPTNEGQIGGSLEKLESTDAK--GPSTSKYRGFICGEEALQ 178

Query: 121 VSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV 180
           +SPTEPYC+HRPIRRGHLNISQHYPMQQVLEDL+AIWDWIL EKLHIP+SERN+Y+AILV
Sbjct: 179 ISPTEPYCLHRPIRRGHLNISQHYPMQQVLEDLHAIWDWILIEKLHIPQSERNMYAAILV 238

Query: 181 LPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVE 240
           LPE+FDNREIKEM+SIVLRDLRF+SAVVHQEGLAAVFGNGLSTACV+N+GAQVTSVIC+E
Sbjct: 239 LPETFDNREIKEMISIVLRDLRFSSAVVHQEGLAAVFGNGLSTACVINIGAQVTSVICIE 298

Query: 241 DGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 300
           DGVALPNTEKTLPFGGED+SRCLLWTQRHHQTWPQIRTDILTK +DLLMLNR++ESYCEI
Sbjct: 299 DGVALPNTEKTLPFGGEDLSRCLLWTQRHHQTWPQIRTDILTKPLDLLMLNRLRESYCEI 358

Query: 301 KEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYE 360
           KEGE+DAVAVV SYEDGMP GSHKTRL ALNVPPMGLFYP LLVPDVYPPPPRSWF+DYE
Sbjct: 359 KEGEVDAVAVVQSYEDGMPAGSHKTRLNALNVPPMGLFYPMLLVPDVYPPPPRSWFHDYE 418

Query: 361 DMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 420
           DMLEDTWH ++PRR D+SD  +P  + GLPMW+SYPV  +KPKKEEK+GLAEA+TSSILS
Sbjct: 419 DMLEDTWHVEYPRRPDMSDGLFPAFS-GLPMWDSYPVFASKPKKEEKVGLAEAITSSILS 477

Query: 421 TGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVS 480
           TGRIDL+RKLFCSIQLIGGVALT GLIP VE+RVLHAIPSNE ID VEVLQSR NPT+V+
Sbjct: 478 TGRIDLKRKLFCSIQLIGGVALTPGLIPVVEDRVLHAIPSNEVIDTVEVLQSRINPTFVT 537

Query: 481 WKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 532
           WKGGA+LG+LDFGRDAWIHREDWIRNGIHIGSGRKYKDSY+LQAQAMCYINS
Sbjct: 538 WKGGAILGVLDFGRDAWIHREDWIRNGIHIGSGRKYKDSYYLQAQAMCYINS 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083596|emb|CBI23585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433003|ref|XP_002280839.1| PREDICTED: actin-related protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432582|ref|XP_004134078.1| PREDICTED: actin-related protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533797|ref|XP_003535445.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356576460|ref|XP_003556349.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449526595|ref|XP_004170299.1| PREDICTED: actin-related protein 9-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|297795073|ref|XP_002865421.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] gi|297311256|gb|EFH41680.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|26450570|dbj|BAC42397.1| putative actin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15239891|ref|NP_199163.1| actin-related protein 9 [Arabidopsis thaliana] gi|75335424|sp|Q9LSW2.1|ARP9_ARATH RecName: Full=Actin-related protein 9 gi|8843903|dbj|BAA97429.1| actin-like protein [Arabidopsis thaliana] gi|15982921|gb|AAL09807.1| AT5g43500/MWF20_22 [Arabidopsis thaliana] gi|332007589|gb|AED94972.1| actin-related protein 9 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
TAIR|locus:2176516596 ARP9 "actin-related protein 9" 0.977 0.872 0.631 9.7e-183
UNIPROTKB|F1NXV7621 ACTR8 "Uncharacterized protein 0.484 0.415 0.363 5.6e-54
UNIPROTKB|F1SH80624 ACTR8 "Uncharacterized protein 0.424 0.362 0.394 1.1e-52
MGI|MGI:1860775624 Actr8 "ARP8 actin-related prot 0.441 0.376 0.388 3.3e-52
UNIPROTKB|Q1LZF2624 ACTR8 "Actin-related protein 8 0.424 0.362 0.389 1.2e-51
UNIPROTKB|Q9H981624 ACTR8 "Actin-related protein 8 0.424 0.362 0.381 2.6e-51
ZFIN|ZDB-GENE-030131-5065623 actr8 "ARP8 actin-related prot 0.449 0.383 0.354 1.2e-49
UNIPROTKB|Q0IEG8562 Arp8 "Actin-related protein 8" 0.428 0.405 0.330 4.6e-37
POMBASE|SPAC664.02c662 arp8 "actin-like protein, Ino8 0.637 0.512 0.297 3.5e-36
FB|FBgn0030877607 Arp8 "Actin-related protein 8" 0.325 0.285 0.323 6.3e-32
TAIR|locus:2176516 ARP9 "actin-related protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
 Identities = 336/532 (63%), Positives = 415/532 (78%)

Query:     1 MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDVA 59
             MLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD  
Sbjct:    75 MLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDSV 134

Query:    60 FSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEAL 119
             F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEAL
Sbjct:   135 FTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEAL 193

Query:   120 RVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAIL 179
             ++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A++
Sbjct:   194 KISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAVI 253

Query:   180 VLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICV 239
             V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+CV
Sbjct:   254 VVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVCV 313

Query:   240 EDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 299
             EDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES+CE
Sbjct:   314 EDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKESFCE 373

Query:   300 IKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDY 359
             I+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF DY
Sbjct:   374 IRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQDY 433

Query:   360 EDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 419
             E+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSIL
Sbjct:   434 ENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSIL 483

Query:   420 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYV 479
             S GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P +V
Sbjct:   484 SAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFV 543

Query:   480 SWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 531
             +WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct:   544 TWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595
GO:0005737 "cytoplasm" evidence=ISM
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
UNIPROTKB|F1NXV7 ACTR8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH80 ACTR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1860775 Actr8 "ARP8 actin-related protein 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZF2 ACTR8 "Actin-related protein 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H981 ACTR8 "Actin-related protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5065 actr8 "ARP8 actin-related protein 8 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IEG8 Arp8 "Actin-related protein 8" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
POMBASE|SPAC664.02c arp8 "actin-like protein, Ino80 complex subunit Arp8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0030877 Arp8 "Actin-related protein 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSW2ARP9_ARATHNo assigned EC number0.63150.97740.8724yesno
Q0JF03ARP9_ORYSJNo assigned EC number0.61790.97360.8839yesno
A2XQX0ARP9_ORYSINo assigned EC number0.61790.97360.8839N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 4e-18
pfam00022367 pfam00022, Actin, Actin 2e-16
smart00268373 smart00268, ACTIN, Actin 2e-12
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 5e-06
smart00268373 smart00268, ACTIN, Actin 3e-05
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.001
pfam00022367 pfam00022, Actin, Actin 0.002
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 0.004
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information 
 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 86/431 (19%), Positives = 148/431 (34%), Gaps = 59/431 (13%)

Query: 95  RNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLY 154
           R  D   +     +   ++ G EA          +  PI  G   I  ++   +      
Sbjct: 38  RRRDEDSVMEDTEEKDTYV-GNEAQNDRDNSLLELRYPIENG---IILNWDAME------ 87

Query: 155 AIWDWILTEKLHIPRSERNLYSAILVLPESFDN-REIKE-MLSIVLRDLRFASAVVHQEG 212
            IWD+    K          +   L+L E   N    +E +  ++   L   +  +  + 
Sbjct: 88  QIWDYTFFNKGD-LLPSPEEHP--LLLTEPPLNPPSNREKITELLFETLNVPALYLAIQA 144

Query: 213 LAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR---CLLWTQ 267
           + +++ +G S  T  V++ G  VT VI V DG+ LP   K +  GG DI+     LL  +
Sbjct: 145 VLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLL--R 202

Query: 268 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEI----DAVAVVHSYEDGMPPGSH 323
             +                  ++N IKE  CE  +       DA       E+   P   
Sbjct: 203 EKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEK--PAEK 260

Query: 324 KTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDF----------PR 373
            T           +      +PD             E    +     F            
Sbjct: 261 STESTFQLSKETSIAKESKELPD-----------GEEIEFGN--EERFKAPEILFKPELP 307

Query: 374 RSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCS 433
            S + +      +    + E+Y +  T    +   GL E V  SI      D+++ L+ +
Sbjct: 308 ISGLEEAGKIDESKQELVAENYEISPTNLGNDI-AGLPELVYQSIQI-CDEDVRKSLYSN 365

Query: 434 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDM-VEVLQSRTNPTYVSWKGGAVLGILDF 492
           I L GG       IP   ER+   + S       V V+    +P+  +W G ++L  L+ 
Sbjct: 366 IVLTGGT----SKIPGFAERLQKELTSLAPSIWKVSVIPPP-DPSLDAWLGASILASLET 420

Query: 493 GRDAWIHREDW 503
            +  WI +E++
Sbjct: 421 FQQLWITKEEY 431

Length = 444
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 99.95
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.95
PRK13927334 rod shape-determining protein MreB; Provisional 99.94
PRK13929335 rod-share determining protein MreBH; Provisional 99.93
PRK13928336 rod shape-determining protein Mbl; Provisional 99.9
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.86
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.63
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.44
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.21
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.73
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.7
CHL00094 621 dnaK heat shock protein 70 98.68
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.59
PTZ00400 663 DnaK-type molecular chaperone; Provisional 98.58
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.58
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.57
PLN03184 673 chloroplast Hsp70; Provisional 98.49
TIGR02350595 prok_dnaK chaperone protein DnaK. Members of this 98.48
PRK13411 653 molecular chaperone DnaK; Provisional 98.45
PRK05183 616 hscA chaperone protein HscA; Provisional 98.44
PRK13410 668 molecular chaperone DnaK; Provisional 98.4
PRK01433595 hscA chaperone protein HscA; Provisional 98.38
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.37
PRK11678450 putative chaperone; Provisional 98.35
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.22
COG0443579 DnaK Molecular chaperone [Posttranslational modifi 98.1
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.0
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.61
PRK13917344 plasmid segregation protein ParM; Provisional 97.41
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 97.03
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 96.82
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.44
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 95.77
PRK10719475 eutA reactivating factor for ethanolamine ammonia 94.97
COG4820277 EutJ Ethanolamine utilization protein, possible ch 94.48
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 91.77
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 91.15
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 90.33
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 88.97
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 88.18
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 86.5
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 84.34
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 83.53
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 82.85
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-71  Score=568.54  Aligned_cols=359  Identities=23%  Similarity=0.413  Sum_probs=304.0

Q ss_pred             HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546           17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN   96 (532)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~   96 (532)
                      .+|.++++.|.+|.+++.|...||..+||+......                   .                        
T Consensus        11 ViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~-------------------~------------------------   47 (372)
T KOG0676|consen   11 VIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVM-------------------A------------------------   47 (372)
T ss_pred             EEECCCceeecccCCCCCCceecceecccccccccc-------------------c------------------------
Confidence            368899999999999999999999999995511110                   0                        


Q ss_pred             CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546           97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS  176 (532)
Q Consensus        97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~  176 (532)
                               ....++.+||++|....     .|+|||+||+|+         |||+|+.||+|+|++.|++.|+++    
T Consensus        48 ---------~~~~~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----  100 (372)
T KOG0676|consen   48 ---------GMTQKDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----  100 (372)
T ss_pred             ---------cccccccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----
Confidence                     01356788999998752     889999999999         999999999999999999999998    


Q ss_pred             eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546          177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG  255 (532)
Q Consensus       177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G  255 (532)
                      |||+++++++++..|+ ++|+|||.|++|++++..++++  |++|++||||||+|++.|+++||+||+++++++.++++|
T Consensus       101 pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~  178 (372)
T KOG0676|consen  101 PVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLA  178 (372)
T ss_pred             ceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheeccc
Confidence            7999999999999885 9999999999999999887777  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCC
Q 009546          256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPM  335 (532)
Q Consensus       256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~  335 (532)
                      |+++|++|+.+|.+.+       +++.+..+.+++++|||++|||+.+ .         ++++........+.       
T Consensus       179 G~dlt~~l~~~L~~~g-------~s~~~~~~~eIv~diKeklCyvald-~---------~~e~~~~~~~~~l~-------  234 (372)
T KOG0676|consen  179 GRDLTDYLLKQLRKRG-------YSFTTSAEFEIVRDIKEKLCYVALD-F---------EEEEETANTSSSLE-------  234 (372)
T ss_pred             chhhHHHHHHHHHhcc-------cccccccHHHHHHHhHhhhcccccc-c---------chhhhccccccccc-------
Confidence            9999999999888765       3566678899999999999999963 1         11110000000000       


Q ss_pred             CCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546          336 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA  413 (532)
Q Consensus       336 ~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~  413 (532)
                                           .+|+  ++|+..+.++ +|+.++|.|| |+..|                 .+..||+++
T Consensus       235 ---------------------~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g-----------------~e~~gi~~~  274 (372)
T KOG0676|consen  235 ---------------------SSYE--LPDGQKITIGNERFRCPEVLFQPSLLG-----------------MESPGIHEL  274 (372)
T ss_pred             ---------------------cccc--CCCCCEEecCCcccccchhcCChhhcC-----------------CCCCchhHH
Confidence                                 0111  3444444443 7999999999 77665                 578899999


Q ss_pred             HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546          414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG  493 (532)
Q Consensus       414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f  493 (532)
                      +.+||.+| |+|+|+.||.||+|+||+|++|||.+||++||..+.|...   +++|+++ .+|.+++|+||||+|+|++|
T Consensus       275 ~~~sI~kc-d~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~---~ikv~~p-p~r~~s~WlGgSIlaslstf  349 (372)
T KOG0676|consen  275 TVNSIMKC-DIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTI---KIKVIAP-PERKYSAWLGGSILASLSTF  349 (372)
T ss_pred             HHHHHHhC-ChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCc---ceEEecC-cccccceecCceeEeecchH
Confidence            99999999 9999999999999999999999999999999999999776   4577753 57889999999999999999


Q ss_pred             cceeEeHHHHHHcCcceeeeccC
Q 009546          494 RDAWIHREDWIRNGIHIGSGRKY  516 (532)
Q Consensus       494 ~~~wITr~eYeE~G~~i~~rk~~  516 (532)
                      ++|||||+||+|+|+++++||||
T Consensus       350 q~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  350 QQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             hhccccHHHHhhhCCceeeeccC
Confidence            99999999999999999999997

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-39
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-09
4am6_A655 C-terminal Domain Of Actin-related Protein Arp8 Fro 2e-23
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 3e-07
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 3e-07
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 3e-06
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 8e-04
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 8e-04
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 9e-04
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 140/239 (58%), Gaps = 16/239 (6%)
Query: 111 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYP-----MQQVLEDLYAIWDWILTEKL 165
           E++ GEEAL V+P + Y IH PIRRG LNI   +P     +  VL D+  IW   + + L
Sbjct: 133 EYLVGEEALYVNPLDCYNIHWPIRRGQLNI---HPGPGGSLTAVLADIEVIWSHAIQKYL 189
Query: 166 HIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTAC 225
            IP  +   Y  IL++P+ ++ + +KE+++++L  + F+  VVHQE + A +G+GLS+ C
Sbjct: 190 EIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTC 249
Query: 226 VVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAM 285
           +V++G Q TSV CVEDGV+  NT   L +GG D+SRC  W  +    +P  R   LT  M
Sbjct: 250 IVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQ-RAGFP-YRECQLTNKM 307
Query: 286 DLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGS---HKTRLIALNV-PPMGLFYP 340
           D L+L  +KE++C + + +I  +   H ++   P      ++ RL    +  PM LFYP
Sbjct: 308 DCLLLQHLKETFCHLDQ-DISGLQ-DHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYP 364
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S. Cerevisiae Length = 655 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 7e-20
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 5e-11
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-09
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-04
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 5e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
 Score = 91.6 bits (227), Expect = 7e-20
 Identities = 74/454 (16%), Positives = 140/454 (30%), Gaps = 92/454 (20%)

Query: 110 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPR 169
           ++    +      P + Y +   I  G         +    +     W W L  +L++  
Sbjct: 63  KKIFSEQSIG--IPRKDYELKPIIENG---------LVIDWDTAQEQWQWALQNELYLNS 111

Query: 170 SERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVN 228
           +        L+    +++ E ++  L ++L  ++F +  +        F  G     VV+
Sbjct: 112 NS---GIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVD 168

Query: 229 MGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL--LWTQR----------------HH 270
           +G    SV  + DG+ L  + +     G+ I+  +      +                  
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKK 228

Query: 271 QTWPQIRTDILTKAMDLLMLNRIKESYCEI-----KEGEIDAV--AVVHSYEDGMPPGSH 323
               ++   +   A +       KE+ C I      E     +      S E   P    
Sbjct: 229 TFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SPWNEE 286

Query: 324 KT-----RLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDIS 378
                  R          LF PK          P +W      +++   +   P +    
Sbjct: 287 IVFDNETRYGF----AEELFLPK------EDDIPANWPRSNSGVVKTWRNDYVPLKRTKP 336

Query: 379 DNFYPGINVGLPMWESYPVLTTKPK--------------------------KEEKIGLAE 412
                      P  E      +K                              E IGLA+
Sbjct: 337 SGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLAD 396

Query: 413 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERV---LHAIPSNEAIDMVEV 469
            V SSI+S+  +DL+  L  ++ L GG +   GL     +R+   L+ I  +     +  
Sbjct: 397 LVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGL----SDRLMTELNKILPSLKFR-ILT 450

Query: 470 LQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 503
                   Y SW GG++L  L      W+ ++++
Sbjct: 451 TGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.92
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.72
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.5
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.48
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.41
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.31
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.07
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 98.95
2kho_A605 Heat shock protein 70; molecular chaperone, HSP70, 98.86
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.85
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 98.73
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.72
4b9q_A605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.46
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.37
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 97.58
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 97.54
3js6_A355 Uncharacterized PARM protein; partition, segregati 97.15
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 97.03
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 96.76
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 84.21
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 83.39
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.5e-79  Score=678.66  Aligned_cols=489  Identities=27%  Similarity=0.455  Sum_probs=353.4

Q ss_pred             HHHHhhhhcCccCCccccCCCCCccccccccccccCcc------------------------ccccccccccc-ccCCCC
Q 009546           18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSR------------------------KDVAFSWTNVY-EKEPMP   72 (532)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~~~~   72 (532)
                      .|-++..+||||++++.| ..+|..|||.---.....-                        ....-.|+..+ ...+..
T Consensus        20 IdpGS~~~riG~A~d~~P-~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   98 (593)
T 4fo0_A           20 IHPGSTTLRIGRATDTLP-ASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRI   98 (593)
T ss_dssp             EECCSSEEEEEETTCSSC-EEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTTSCCCC
T ss_pred             EeCCCCCeEeeecCCCCC-CeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhcccccC
Confidence            477899999999999999 4689999995311000000                        00112355555 355678


Q ss_pred             CcccccccCCCCCCcccccCCCCCCCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeec-CCC-CcccCH
Q 009546           73 STALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHY-PMQQVL  150 (532)
Q Consensus        73 ~~~~e~~~~~n~~~~p~~i~~h~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~-~~~-~~q~dw  150 (532)
                      ++|.|.+++||++..|+.|++|+++   +|.+. ...+++|||++|+.+.+.+.|.|+|||+||.+++. .+| +++.+|
T Consensus        99 ~~s~~~~~~~n~~~~p~~i~~~~~~---~~~~~-~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~w  174 (593)
T 4fo0_A           99 PVSPEQARSYNKQMRPAILDHCSGN---KWTNT-SHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVL  174 (593)
T ss_dssp             CCCHHHHHHHHTTCCCEEEESSCSC---CCCCC-TTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHH
T ss_pred             CCcHHHhhhhhccCCCcccCCCCcc---ccccc-cccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCH
Confidence            9999999999999999999998775   47553 25678999999999887889999999999999984 344 889999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHH-HHHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEee
Q 009546          151 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNM  229 (532)
Q Consensus       151 d~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~r-kl~eilFE~~~~psv~~~~~avlalya~G~~tglVVDi  229 (532)
                      ++||.||+|+|+++|++++++.+.+ +||+++++++++..| +|+|+|||+|+||+++++++++||+||+|++|||||||
T Consensus       175 dd~e~iw~~~~~~~L~i~~~d~~~~-pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDi  253 (593)
T 4fo0_A          175 ADIEVIWSHAIQKYLEIPLKDLKYY-RCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDV  253 (593)
T ss_dssp             HHHHHHHHHHHHHTSCCCGGGGGGC-EEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCchhccCC-cEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEe
Confidence            9999999999999999998874322 799999988877776 59999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhh
Q 009546          230 GAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA  309 (532)
Q Consensus       230 G~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~  309 (532)
                      |++.|+|+||+||+++.++++++++||++||++|.++|+.++.  ++...++....+++++++|||++|||+.+..... 
T Consensus       254 G~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~--~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~-  330 (593)
T 4fo0_A          254 GDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGF--PYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQ-  330 (593)
T ss_dssp             CSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTC--SCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCE-
T ss_pred             CCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCC--CccccccccchhHHHHHHHHHHhcccccchHHhh-
Confidence            9999999999999999999999999999999999999998762  3444456667899999999999999997532211 


Q ss_pred             hhccccCCCCCCC-ceeee---eeccCCCCCCCCCcccCCCCCCCCCCC--CCCCc------------------------
Q 009546          310 VVHSYEDGMPPGS-HKTRL---IALNVPPMGLFYPKLLVPDVYPPPPRS--WFNDY------------------------  359 (532)
Q Consensus       310 ~~~~y~~~~p~~~-~k~~~---~~~~~~P~~lf~p~~~~~e~~~~p~~~--~~~d~------------------------  359 (532)
                      . ..+....|++. .++.+   .+...+|+++|+|.++..+........  ...+.                        
T Consensus       331 ~-~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (593)
T 4fo0_A          331 D-HEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATA  409 (593)
T ss_dssp             E-EEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC------------------------------
T ss_pred             h-hhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccc
Confidence            1 11222245543 22322   245678999999987753211000000  00000                        


Q ss_pred             ---cccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCC-------CCCcc--------CCCCCcccCCCHHHHHHHHHh
Q 009546          360 ---EDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWE-------SYPVL--------TTKPKKEEKIGLAEAVTSSIL  419 (532)
Q Consensus       360 ---ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~-------~~~~~--------~~~~~~~~~~gL~e~I~~sI~  419 (532)
                         .-.++++..+.++ +|+.++|.|| |....+.....       .....        +......+..||+++|.+||.
T Consensus       410 ~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~  489 (593)
T 4fo0_A          410 DRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSID  489 (593)
T ss_dssp             -------------------------------------------------------------CHHHHSCCCHHHHHHHHHH
T ss_pred             ccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence               0123344444453 7999999999 54321110000       00000        000011245799999999999


Q ss_pred             cCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCC--cceEEEcCCC--CCCccceEeceeeeecccCccc
Q 009546          420 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEA--IDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRD  495 (532)
Q Consensus       420 ~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~--~~~V~v~~~~--~~~~~~aW~GgSIlasL~~f~~  495 (532)
                      +|+++|+|++||+||||+||+|++|||.+||++||..++|...+  +.+|+|++.+  .+|++++|+||||||+|++|++
T Consensus       490 ~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~  569 (593)
T 4fo0_A          490 CCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQE  569 (593)
T ss_dssp             TCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGG
T ss_pred             hCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHH
Confidence            99337999999999999999999999999999999999986532  2356777643  5899999999999999999999


Q ss_pred             eeEeHHHHHHcCcceeeeccC
Q 009546          496 AWIHREDWIRNGIHIGSGRKY  516 (532)
Q Consensus       496 ~wITr~eYeE~G~~i~~rk~~  516 (532)
                      +||||+||+|+|++||+|||.
T Consensus       570 ~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          570 LWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             TCEEHHHHHHHTTHHHHHHCS
T ss_pred             eeECHHHHHhhCcHHHhhcCC
Confidence            999999999999999999995
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 532
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 5e-20
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 2e-15
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 7e-07
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.7 bits (214), Expect = 5e-20
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 67/289 (23%)

Query: 222 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDIL 281
           +T  V++ G  VT  + + +G ALP+    L   G D++  L+            R    
Sbjct: 2   TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE-------RGYSF 54

Query: 282 TKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 341
               +  ++  IKE  C +             +E+ M   +  + L      P G     
Sbjct: 55  VTTAEREIVRDIKEKLCYV----------ALDFENEMATAASSSSLEKSYELPDG----- 99

Query: 342 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTK 401
                                      T    R    +  +    +G+            
Sbjct: 100 ------------------------QVITIGNERFRCPETLFQPSFIGM------------ 123

Query: 402 PKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN 461
               E  G+ E   +SI     ID+++ L+ +  + GG      + P + +R+   I + 
Sbjct: 124 ----ESAGIHETTYNSI-MKCDIDIRKDLYANNVMSGGTT----MYPGIADRMQKEITAL 174

Query: 462 EAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHI 510
               M   + +     Y  W GG++L  L   +  WI ++++   G  I
Sbjct: 175 APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 223
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.97
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.89
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.84
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.81
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.4
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 97.43
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 96.75
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 96.09
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 92.73
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 92.13
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 81.97
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 81.29
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-46  Score=365.35  Aligned_cols=223  Identities=21%  Similarity=0.355  Sum_probs=180.7

Q ss_pred             CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceec
Q 009546          221 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI  300 (532)
Q Consensus       221 ~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v  300 (532)
                      ++||||||+|++.|+|+||+||++++++++++++||++||++|.++|..++.       ++....+.++++++||.+|++
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~-------~~~~~~~~~~~~~~ke~~~~~   73 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYV   73 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTC-------CCCSHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccC-------CcCCHHHHHHHHHHHHHHhhc
Confidence            5899999999999999999999999999999999999999999999988753       334456788999999999999


Q ss_pred             cCCccchhhhhccccCCCCCCCceeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCC
Q 009546          301 KEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISD  379 (532)
Q Consensus       301 ~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E  379 (532)
                      +.+.......   ... .+.....+                                    .++|+..+.++ +|+.++|
T Consensus        74 ~~d~~~e~~~---~~~-~~~~~~~~------------------------------------~lpdg~~i~i~~er~~~~E  113 (225)
T d2fxua2          74 ALDFENEMAT---AAS-SSSLEKSY------------------------------------ELPDGQVITIGNERFRCPE  113 (225)
T ss_dssp             CSSHHHHHHH---HHH-CSTTCEEE------------------------------------ECTTSCEEEESTHHHHHHH
T ss_pred             ccchhHHHhh---ccc-CcccceeE------------------------------------ECCCCCEEEEchHhccccH
Confidence            8752211000   000 00000000                                    12334444443 6889999


Q ss_pred             CCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhC
Q 009546          380 NFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI  458 (532)
Q Consensus       380 ~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~  458 (532)
                      .|| |...+                 .+..||+++|.+||.+| |+|+|+.|++||+|+||+|++|||.+||++||..+.
T Consensus       114 ~lF~p~~~~-----------------~~~~gl~~~i~~sI~~~-~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~  175 (225)
T d2fxua2         114 TLFQPSFIG-----------------MESAGIHETTYNSIMKC-DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  175 (225)
T ss_dssp             TTTCGGGGT-----------------CCSCCHHHHHHHHHHTS-CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             hhcCccccC-----------------CccCChhHHHHHHhhcC-CcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhh
Confidence            999 65544                 46789999999999999 999999999999999999999999999999999998


Q ss_pred             CCCCCcceEEEcCCCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceee
Q 009546          459 PSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGS  512 (532)
Q Consensus       459 p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~  512 (532)
                      +...++   +|.. +.+|++++|+||||+|+|++|+++||||+||+|+|++|||
T Consensus       176 ~~~~~~---~v~~-~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         176 PSTMKI---KIIA-PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             CTTCCC---CEEC-CTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ccccce---EEec-CCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            876644   5554 3589999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure