Citrus Sinensis ID: 009549
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.889 | 0.660 | 0.426 | 1e-105 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.909 | 0.695 | 0.383 | 5e-93 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.911 | 0.682 | 0.371 | 1e-87 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.958 | 0.695 | 0.347 | 2e-84 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.919 | 0.654 | 0.351 | 9e-82 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.879 | 0.662 | 0.369 | 1e-81 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.913 | 0.677 | 0.357 | 4e-81 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.943 | 0.666 | 0.323 | 1e-74 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.917 | 0.661 | 0.332 | 9e-74 | |
| Q8GWD2 | 649 | Probable cyclic nucleotid | no | no | 0.902 | 0.739 | 0.334 | 2e-72 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/514 (42%), Positives = 301/514 (58%), Gaps = 41/514 (7%)
Query: 1 MIAITLDPFFFYIPVLNNQNKCFQLDRNLGITATVLRSFIDLHKLPRIIHLIYVELCGNK 60
+IA++LDP FFY+P++++ KC +D+ + ITA+VLRSF D+ + II
Sbjct: 104 IIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPS 163
Query: 61 EEV--------KKSAYATARLWIFFLIDILAVLPIPQVLVMLAKSH-----RMSGRKFLF 107
V K A L F+IDILAVLP+PQ+++++ H ++ + L
Sbjct: 164 SRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLK 223
Query: 108 SMTFFLLQYVLRVIRTYGLLTK--------NDSTWAIVSFNLFLYMHGGHVFGALWYFLA 159
+ FF QY+ R IR Y L + ++ WA +FNLFLYM HVFGA WY +
Sbjct: 224 FIVFF--QYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFS 281
Query: 160 IEKVTACWKKTCINHHIRCSSRSFYCD-DSLRDYKFLDEFCPITTGNKTNYDFGLFEDAL 218
IE+ T CWK+ C ++ C S+ YCD ++ FL+E CPI T N T +DFG+F DAL
Sbjct: 282 IERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDAL 341
Query: 219 QSGIVGVTDFPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIG 278
QSG+V DFPQKF +C WGLQNLS+ GQNL+ ST I + FA+ ++ G+VLF FLIG
Sbjct: 342 QSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIG 401
Query: 279 KM----QSDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLV 334
M QS T R K ++ +Q S L L+++I+ Y+Q W + + D NL+
Sbjct: 402 NMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLL 461
Query: 335 NNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPID 394
+NLP+ LR +K L LL V FE+ E+ L L D L PV +T+ + I REGDP+D
Sbjct: 462 SNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVD 521
Query: 395 EMVFVLEGKLWSHSARNVTIATSSDGHNG--KKDYLRYGDFCGEELIAWAQQKVDNPSSS 452
EM+F++ GKL +TI T++ G G +YL GDFCGEEL+ WA +D SSS
Sbjct: 522 EMLFIMRGKL-------LTI-TTNGGRTGFLNSEYLGAGDFCGEELLTWA---LDPHSSS 570
Query: 453 NLPISTTTIQALTEVEGFYLLASDLKNAFIEHRR 486
NLPIST T++AL EVE F L A DLK + RR
Sbjct: 571 NLPISTRTVRALMEVEAFALKADDLKFVASQFRR 604
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8GWD2|CNG12_ARATH Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 6969231 | 708 | cyclic nucleotide-gated calmodulin-bindi | 0.911 | 0.685 | 0.432 | 1e-105 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.909 | 0.682 | 0.417 | 1e-104 | |
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.889 | 0.660 | 0.426 | 1e-103 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.904 | 0.678 | 0.421 | 1e-103 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.902 | 0.670 | 0.409 | 1e-102 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.911 | 0.685 | 0.404 | 1e-102 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.907 | 0.576 | 0.414 | 1e-102 | |
| 449456377 | 713 | PREDICTED: cyclic nucleotide-gated ion c | 0.906 | 0.676 | 0.403 | 1e-101 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.909 | 0.674 | 0.411 | 1e-101 | |
| 449497318 | 714 | PREDICTED: cyclic nucleotide-gated ion c | 0.906 | 0.675 | 0.404 | 1e-100 |
| >gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] | Back alignment and taxonomy information |
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Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/534 (43%), Positives = 307/534 (57%), Gaps = 49/534 (9%)
Query: 1 MIAITLDPFFFYIPVLNNQNKCFQLDRNLGITATVLRSFIDLHKLPRIIHLIYVELCGNK 60
+IAI+LDP F YIPV++N NKC L+R L +TA+VLRSF D+ I
Sbjct: 98 VIAISLDPLFLYIPVIDNDNKCLGLNRTLEVTASVLRSFTDIFYFLHIALQFRTGFIAPS 157
Query: 61 EEV------KKSAYATARLWI--FFLIDILAVLPIPQVLVM-----LAKSHRMSGRKFLF 107
V + A+ A+ ++ +FLIDILAVLP+PQV+++ L S ++ + L
Sbjct: 158 SRVFGRGVLIEDAWEIAKRYLSTYFLIDILAVLPLPQVVILIIIPKLRGSRSLNTKNLLK 217
Query: 108 SMTFFLLQYVLRVIRTY----------GLLTKNDSTWAIVSFNLFLYMHGGHVFGALWYF 157
S+ FF QY+ RV+R Y G+LT ++ WA +FNLFLYM HV GA WY
Sbjct: 218 SVVFF--QYIPRVLRVYPLYREVTRTSGILT--ETAWAGAAFNLFLYMLASHVLGAFWYL 273
Query: 158 LAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYK-FLDEFCPITTGNKTNYDFGLFED 216
+IE+ T CWK+ C N C S YCDD +K L+ CPI T N T +DFG+F
Sbjct: 274 FSIERETTCWKQACGNSS-PCHHASLYCDDDHTKFKTLLNSSCPIETPNATLFDFGIFLG 332
Query: 217 ALQSGIVGVTDFPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFL 276
ALQSG+VG DFPQKF +C WGLQNLS+ GQNL+ ST I + FA+ ++ G+VLF FL
Sbjct: 333 ALQSGVVGPMDFPQKFFYCFWWGLQNLSSLGQNLQTSTFIWEMCFAVFISIAGLVLFAFL 392
Query: 277 IGKM----QSDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVN 332
IG M QS T R K ++ +Q S L L+++I+ Y+Q W + + D N
Sbjct: 393 IGNMQTCLQSSTLRLEEMRVKRRDAEQWMSHRLLPENLRERIRCYEQYRWQETRGVDEEN 452
Query: 333 LVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDP 392
L++NLP+ LR +K L LL V FE+ E+ L L D L PV FT + I REGDP
Sbjct: 453 LIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDHLKPVLFTKDSFIVREGDP 512
Query: 393 IDEMVFVLEGKLWSHSARNVTIATSSDGHNG--KKDYLRYGDFCGEELIAWAQQKVDNPS 450
+D M+FV+ GKL S T++ G G ++L+ GDFCGEEL+ WA +D S
Sbjct: 513 VDAMLFVMRGKLLS--------VTTNGGRTGFFNSEHLKAGDFCGEELLTWA---LDPNS 561
Query: 451 SSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRY---QIVRAVRLIQTFWR 501
S+NLPIST T QAL+EVE F L+A DLK + RR Q+ R WR
Sbjct: 562 STNLPISTRTAQALSEVEAFALVADDLKLVASQFRRLHSKQLRHTFRFYSGQWR 615
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Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449497318|ref|XP_004160370.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.806 | 0.599 | 0.433 | 3.3e-86 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.693 | 0.594 | 0.335 | 4.1e-77 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.791 | 0.604 | 0.386 | 9.3e-75 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.676 | 0.487 | 0.348 | 1.4e-72 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.676 | 0.478 | 0.341 | 2.3e-72 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.798 | 0.601 | 0.376 | 1.3e-68 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.689 | 0.500 | 0.374 | 4.2e-63 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.706 | 0.503 | 0.368 | 1.1e-62 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.687 | 0.510 | 0.370 | 2.2e-59 | |
| TAIR|locus:2039114 | 649 | CNGC12 "cyclic nucleotide-gate | 0.787 | 0.645 | 0.346 | 2.5e-58 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 203/468 (43%), Positives = 276/468 (58%)
Query: 56 LCGNKEEVKKSAYATARLWIFFLIDILAVLPIPQVLVMLAKSHRMSGRKFLFS--MTFFL 113
L +K E+ K Y ++ F+IDILAVLP+PQ+++++ H M G L + M F+
Sbjct: 172 LVEDKREIAKR-YLSSH----FIIDILAVLPLPQMVILIIIPH-MRGSSSLNTKNMLKFI 225
Query: 114 L--QYVLRVIRTYGL---LTKN-----DSTWAIVSFNLFLYMHGGHVFGALWYFLAIEKV 163
+ QY+ R IR Y L +T+ ++ WA +FNLFLYM HVFGA WY +IE+
Sbjct: 226 VFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERE 285
Query: 164 TACWKKTCINHHIRCSSRSFYCD-DSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGI 222
T CWK+ C ++ C S+ YCD ++ FL+E CPI T N T +DFG+F DALQSG+
Sbjct: 286 TVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGV 345
Query: 223 VGVTDFPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQ- 281
V DFPQKF +C WGLQNLS+ GQNL+ ST I + FA+ ++ G+VLF FLIG MQ
Sbjct: 346 VESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQT 405
Query: 282 ---SDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLP 338
S T R K ++ +Q S L L+++I+ Y+Q W + + D NL++NLP
Sbjct: 406 YLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLP 465
Query: 339 QGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVF 398
+ LR +K L LL V FE+ E+ L L D L PV +T+ + I REGDP+DEM+F
Sbjct: 466 KDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLF 525
Query: 399 VLEGKLWSHSARNVTIATSSDGHNG--KKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPI 456
++ GKL +TI T+ G G +YL GDFCGEEL+ WA +D SSSNLPI
Sbjct: 526 IMRGKL-------LTITTNG-GRTGFLNSEYLGAGDFCGEELLTWA---LDPHSSSNLPI 574
Query: 457 STTTIQALTEVEGFYLLASDLKNAFIEHRRY---QIVRAVRLIQTFWR 501
ST T++AL EVE F L A DLK + RR Q+ R W+
Sbjct: 575 STRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWK 622
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 2e-10 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 3e-05 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 4e-05 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 0.004 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 19/125 (15%)
Query: 360 FERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSD 419
F ++EL +L+D L F I R+GDP D + VL G + D
Sbjct: 2 FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSV-------EVYKLDED 54
Query: 420 GHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKN 479
G +L GD GE + + T++ALT+ E L SD +
Sbjct: 55 GREQIVGFLGPGDLFGELALL------------GNGPRSATVRALTDSELLVLPRSDFRR 102
Query: 480 AFIEH 484
E+
Sbjct: 103 LLQEY 107
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
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| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
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| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.49 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.42 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.38 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.37 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.34 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.32 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.29 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.28 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.26 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.25 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.21 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.2 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.19 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.17 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.14 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.07 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.06 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 98.99 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.93 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.88 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.88 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.86 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.49 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.48 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.21 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.99 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.94 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.76 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.57 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.46 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.16 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.77 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.21 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.09 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 95.79 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 94.52 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 94.35 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 91.9 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 83.92 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 82.9 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-80 Score=659.79 Aligned_cols=450 Identities=30% Similarity=0.521 Sum_probs=376.3
Q ss_pred eeeeeeEEecCcceEEec--------CCcceeEEeeehhhhhhcccceeeEEEE----EEecCce-EEecCHHHHHH--h
Q 009549 9 FFFYIPVLNNQNKCFQLD--------RNLGITATVLRSFIDLHKLPRIIHLIYV----ELCGNKE-EVKKSAYATAR--L 73 (532)
Q Consensus 9 l~~y~~~~~p~~~~f~~~--------~~~~~~~~~~~~~~d~~f~~~~~Di~l~----~~~~~g~-~V~~d~~~Ia~--l 73 (532)
+.+|++++.|+.+||... ......+.++|.++|++| ++||+++ |...++. +| .||++||+ +
T Consensus 87 ~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~ff---lvdIvL~Frtayv~~~s~elV-~dpk~IA~rYl 162 (727)
T KOG0498|consen 87 LVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFF---LVDIVLNFRTAYVDPSSYELV-DDPKKIAKRYL 162 (727)
T ss_pred HHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHH---HHHHHHhheEEEECCCCceee-eCHHHHHHHHH
Confidence 445666666666666554 336788999999999999 9999999 5566665 89 99999999 9
Q ss_pred hhhhHHHHHhhcChhHHHHHHHhcccc-CCccchhHHHHHHHHHHHHHHHHhhccccc--------ccchHHHHHHHHHH
Q 009549 74 WIFFLIDILAVLPIPQVLVMLAKSHRM-SGRKFLFSMTFFLLQYVLRVIRTYGLLTKN--------DSTWAIVSFNLFLY 144 (532)
Q Consensus 74 k~~F~~Dlis~lP~~~~~~~~~~~~~~-~~~~~~~lrl~rl~~~l~rl~r~~~~~~~~--------~~~~~~~~~~l~~~ 144 (532)
|+||++|++|++|+++++.+. .+..- .......+..+-+++|++|++|+...+.+. .+.|..+++.++++
T Consensus 163 ~twFiiDlis~lP~~~i~~~~-~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~ 241 (727)
T KOG0498|consen 163 KTWFLIDLISTLPFDQIVVLV-VIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVY 241 (727)
T ss_pred hhhHHHHHHHhcChhhheeee-eecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999998875 22000 000110133333344667777766554331 25566666788899
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhhccCcccCCcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhcCccc
Q 009549 145 MHGGHVFGALWYFLAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVG 224 (532)
Q Consensus 145 ~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~ 224 (532)
++++||.||+||++|.++..+||.+ .+|+...+...++....++||+
T Consensus 242 ~l~sH~~gc~wYlia~~~~~~~~~~----------------------~tw~~~l~~~~~~~~~~~~fg~----------- 288 (727)
T KOG0498|consen 242 LLASHWAGCIWYLIAIERPASCPRK----------------------ATWLGSLGRLLSCYNLSFTFGI----------- 288 (727)
T ss_pred HHHHHHHHHHHHHHHhcccccCccc----------------------cccccccccccccCcccccccc-----------
Confidence 9999999999999999888777752 1677653211123344466774
Q ss_pred CCChhHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcC
Q 009549 225 VTDFPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQG 300 (532)
Q Consensus 225 ~~~~~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~ 300 (532)
.+++.+|++|+||+++||||+||||++|+|..|++|+|++|++|.++||++||||+++ +++.++|+.|+.++++|
T Consensus 289 -~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~ 367 (727)
T KOG0498|consen 289 -YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQW 367 (727)
T ss_pred -hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999999999999999999999999999998 77889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEe
Q 009549 301 PSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFF 380 (532)
Q Consensus 301 m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~ 380 (532)
|+++++|++||+||++|++|.|..++|+||+++|++||..||.+|.+|++.++++++|+|+++|++++++|+.++|+..|
T Consensus 368 m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f 447 (727)
T KOG0498|consen 368 MSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYF 447 (727)
T ss_pred HHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccce
Q 009549 381 TDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTT 460 (532)
Q Consensus 381 ~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~t 460 (532)
+|||+|++|||+.++||||.+|.+++ .+.++|...+...+++||+|||.-++++ +..+ +++|
T Consensus 448 ~pge~iireGd~v~~myFI~rG~le~--------~~~~~g~~~~~~~L~~Gd~~GeEl~~~~---~~~p-------~t~T 509 (727)
T KOG0498|consen 448 TPGEYIIREGDPVTDMYFIVRGSLES--------ITTDGGGFFVVAILGPGDFFGEELLTWC---LDLP-------QTRT 509 (727)
T ss_pred CCCCeEEecCCccceeEEEEeeeEEE--------EEccCCceEEEEEecCCCccchHHHHHH---hcCC-------CCce
Confidence 99999999999999999999999999 6666553338999999999997666677 5322 4889
Q ss_pred EEEcceEEEEEeCHHHHHHHHHHchHHH---HHh------------HHHHHHHHHhHhHHHHHHHHhHhhhh
Q 009549 461 IQALTEVEGFYLLASDLKNAFIEHRRYQ---IVR------------AVRLIQTFWRFRRILRFKMNQRRSIN 517 (532)
Q Consensus 461 v~a~t~~~l~~L~~~~f~~ll~~~P~~~---~~~------------a~~~iq~~~~~~~~~~~~~~~~~~~~ 517 (532)
|+|.|.|+++.|+++||..++++||+++ +++ |++.+|.+|+ ++.+++..+.+..+
T Consensus 510 Vralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r--~~~~~~~~~~l~~~ 579 (727)
T KOG0498|consen 510 VRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWR--RHIKRKGEEELALE 579 (727)
T ss_pred eehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHH--HHHHhhccchhhhh
Confidence 9999999999999999999999999998 442 8899999999 88888877777765
|
|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 532 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 3e-23 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 47/240 (19%), Positives = 80/240 (33%), Gaps = 32/240 (13%)
Query: 280 MQSDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQ 339
Q R + K++K RL L Q++ Q W + DV L+ + P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 340 GLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFV 399
LR+ + L ELL+ + FE L LS + F + R+GD + + FV
Sbjct: 64 ELRADIAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 400 LEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTT 459
G + N L GD G + + + +
Sbjct: 123 CSGSM------------EVLKDNTVLAILGKGDLIGSDSLTK----------EQVIKTNA 160
Query: 460 TIQALTEVEGFYLLASDLKNAFIEHRRYQIVRAVRLIQTFWR-FRRILRFKMNQRRSINL 518
++ALT + Y+ L+ + Y Q F + L + + + +L
Sbjct: 161 NVKALTYCDLQYISLKGLREVLRLYPEYA--------QKFVSEIQHDLTYNLREGSGADL 212
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.97 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.82 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.77 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.73 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.69 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.69 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.69 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.67 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.67 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.66 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.64 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.64 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.64 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.63 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.62 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.62 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.62 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.62 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.6 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.6 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.6 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.59 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.58 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.57 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.57 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.57 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.56 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.55 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.55 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.54 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.54 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.53 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.53 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.53 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.52 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.51 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.51 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.49 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.47 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.47 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.47 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.46 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.45 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.44 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.44 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.43 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.43 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.4 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.4 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.38 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.31 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.3 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.3 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.29 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.28 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.24 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.22 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.2 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.13 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.1 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 99.01 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.95 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.94 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.88 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.78 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.66 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.64 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.63 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.61 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.6 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.5 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.5 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.38 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 96.59 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-32 Score=281.73 Aligned_cols=180 Identities=21% Similarity=0.297 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCH
Q 009549 229 PQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSDTERSRSREQKLKEIKQGPSFGRLSS 308 (532)
Q Consensus 229 ~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~i~~~m~~~~lp~ 308 (532)
+..|..|+||+++|||||||||++|.|..|+++++++|++|.+++++.+|.+++...+.. ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~--~~---------------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV--RR---------------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
Confidence 446899999999999999999999999999999999999999999999999987622211 10
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEee
Q 009549 309 RLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFR 388 (532)
Q Consensus 309 ~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~ 388 (532)
+++.+ +.+.++++++|++++++++++++..+++..|+|||.|++
T Consensus 221 ------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~ 264 (355)
T 3beh_A 221 ------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR 264 (355)
T ss_dssp ------HHHHH------------------------------HHC------------------------------------
T ss_pred ------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence 00100 246788999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEE
Q 009549 389 EGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVE 468 (532)
Q Consensus 389 ~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~ 468 (532)
+||.++++|||.+|.|++ ...+ ...+++|++|||.++ +.+.+ |+++++|.++|+
T Consensus 265 ~G~~~~~ly~I~~G~v~v--------~~~~------~~~l~~G~~fGe~~~------l~~~~------~~~~~~A~~~~~ 318 (355)
T 3beh_A 265 IGEPGDRMFFVVEGSVSV--------ATPN------PVELGPGAFFGEMAL------ISGEP------RSATVSAATTVS 318 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCceEEEEEeeEEEE--------EECC------eeEECCCCEEeehHH------hCCCC------cceEEEECccEE
Confidence 999999999999999999 3222 246899999999998 55443 789999999999
Q ss_pred EEEeCHHHHHHHHHHchHHH
Q 009549 469 GFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 469 l~~L~~~~f~~ll~~~P~~~ 488 (532)
++.+++++|.++++++|++.
T Consensus 319 l~~i~~~~f~~ll~~~p~~~ 338 (355)
T 3beh_A 319 LLSLHSADFQMLCSSSPEIA 338 (355)
T ss_dssp --------------------
T ss_pred EEEEeHHHHHHHHHHCHHHH
Confidence 99999999999999999996
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 532 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 2e-12 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 8e-06 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 1e-05 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-05 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 2e-04 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 5e-04 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 5e-04 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 0.001 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 0.001 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 62.7 bits (151), Expect = 2e-12
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 9/140 (6%)
Query: 347 GELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWS 406
G G+ +R V FE E+ L + + L P FT+++ + REGDP++EM+F++ G+L
Sbjct: 1 GSSGSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE- 59
Query: 407 HSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTE 466
+ L+ GDFCG+EL+ WA +D S SNLP ST T++ALTE
Sbjct: 60 -----SVTTDGGRSGFYNRSLLKEGDFCGDELLTWA---LDPKSGSNLPSSTRTVKALTE 111
Query: 467 VEGFYLLASDLKNAFIEHRR 486
VE F L+A +LK + RR
Sbjct: 112 VEAFALIADELKFVASQFRR 131
|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.82 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.75 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.75 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.74 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.74 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.73 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.72 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.72 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.67 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.59 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.56 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.54 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.52 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.49 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.48 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.43 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.39 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.36 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.25 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 99.04 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 97.03 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 84.79 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 81.23 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.8e-31 Score=247.51 Aligned_cols=179 Identities=21% Similarity=0.262 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCC
Q 009549 285 ERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWG 364 (532)
Q Consensus 285 ~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s 364 (532)
++..+|+++++.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||++||.++..+++.+.++++|+|++++
T Consensus 2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~ 80 (193)
T d1q3ea_ 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence 4567899999999999999999999999999999999975 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhh
Q 009549 365 EKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQ 444 (532)
Q Consensus 365 ~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~ 444 (532)
+.++..|+..+++..|.|||+|+++||.+++||||.+|.|++ .. +++ ....+++|++|||.++
T Consensus 81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v--------~~-~~~---~~~~l~~G~~fGe~~~----- 143 (193)
T d1q3ea_ 81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSV--------LT-KGN---KEMKLSDGSYFGEICL----- 143 (193)
T ss_dssp HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEE--------EC--CC---CEEEECTTCEECHHHH-----
T ss_pred HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEe--------ec-CCc---ceeeeccceeeeeeec-----
Confidence 999999999999999999999999999999999999999999 32 222 4678999999999999
Q ss_pred hcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 445 KVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 445 ~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.+. +|+++++|.++|+++.|++++|.+++++||++.
T Consensus 144 -~~~~------~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~ 180 (193)
T d1q3ea_ 144 -LTRG------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMR 180 (193)
T ss_dssp -HHCS------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGH
T ss_pred -cCCC------cccccceecCceEEEEEeHHHHHHHHHHCHHHH
Confidence 4433 278999999999999999999999999999986
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|