Citrus Sinensis ID: 009556
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L844 | 709 | Pentatricopeptide repeat- | yes | no | 0.796 | 0.598 | 0.425 | 1e-102 | |
| Q9FFZ2 | 330 | Putative pentatricopeptid | no | no | 0.595 | 0.960 | 0.402 | 6e-75 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.819 | 0.583 | 0.275 | 3e-49 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.703 | 0.456 | 0.279 | 3e-45 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.853 | 0.720 | 0.260 | 2e-44 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.721 | 0.620 | 0.267 | 8e-44 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.806 | 0.698 | 0.256 | 9e-44 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.815 | 0.548 | 0.263 | 1e-43 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.768 | 0.650 | 0.265 | 1e-41 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.723 | 0.519 | 0.252 | 2e-41 |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/432 (42%), Positives = 269/432 (62%)
Query: 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N I K GD +A+ LL QA G + + S+I ALA GRTLEA+A+F+E+
Sbjct: 273 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 332
Query: 141 FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
G P+ R YN LL+G++K G L ++ ME G+ ++ TY +L+D +VNAGR +
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 392
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
+++ EM + Q NSFV+ +++ +RD G W+K +++E++ +G+ DRQ YN +ID
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
TFGK+ L A+ F++M E I PD VTWN+LI HCK G A E+F M+ +G P
Sbjct: 453 TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLP 512
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
+ +I+ G+ +WD +K+ MK +G + LVD+YG+ GRF D EC+
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECL 572
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
+K GL+PS +M+ L NAYAQ+GL EQ V ++M +G++P+L+ LN LINAFG
Sbjct: 573 EEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500
+ EA +V MK+ G+ PD+VTY+TLMKA IR KF KVP +Y++M SGC PDRKAR
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKAR 692
Query: 501 QILQSALVVLEQ 512
+L+SAL ++Q
Sbjct: 693 SMLRSALRYMKQ 704
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFZ2|PP402_ARATH Putative pentatricopeptide repeat-containing protein At5g36300 OS=Arabidopsis thaliana GN=At5g36300 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 169/420 (40%), Positives = 228/420 (54%), Gaps = 103/420 (24%)
Query: 71 SGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE 130
S S + YN I+Y C+ G+ +EAM+LLA++ +LG P +SY S IE LAS+ RTLE
Sbjct: 5 SHTRISLSMYNSWIRYFCRTGETNEAMSLLAEIHSLGSRPDPLSYVSFIETLASLRRTLE 64
Query: 131 ADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188
ADA+F E+V F + +R YN L+ +L+K
Sbjct: 65 ADALFHEVVRFMIYGSYSVRLYNALVSRYLRK---------------------------- 96
Query: 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248
+ +W ++NEM+ + F+LNSFVYGK+I +YRDNGMWKKA+GIVEEIRE+GL
Sbjct: 97 ----------EVSWRVVNEMKKRKFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIREIGL 146
Query: 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNSLIRWHCKAGDVAKAL 307
+D +IYNS+IDTFGKYGEL E L+V EK+Q+ S RP+I TWNSLIRWHC G V AL
Sbjct: 147 PMDVEIYNSVIDTFGKYGELDEELQVLEKLQRSSDSRPNIRTWNSLIRWHCHHGAVDMAL 206
Query: 308 ELFTQMQEQGFYPDPKIFITIISCLGEL-GKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366
ELFT + E +GEL GK +K +G ++ L +
Sbjct: 207 ELFTMIFED---------------IGELVGK----------LKSQGVAPSANLFCTLANA 241
Query: 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426
Y Q G + + + ++ EG++P+ M +L NA
Sbjct: 242 YAQQGLCKQTVKVLKMMENEGIEPNLIMLNVLINA------------------------- 276
Query: 427 LVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMKAFIRAKKFHKVPEIY 485
FG AGK+ EALS+YH +K+ + I PD+VTYSTLMKAF RAKK+ V Y
Sbjct: 277 ----------FGTAGKHMEALSIYHHIKETVWIHPDVVTYSTLMKAFTRAKKYEMVCSFY 326
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 220/439 (50%), Gaps = 3/439 (0%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE-ADAIFQEMVCFGFNPKL 147
+L ID+A++++ QA GF P +SY ++++A R + A+ +F+EM+ +P +
Sbjct: 146 RLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNV 205
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
YNIL+RGF G + + L ME G N TY L+D + ++DD + ++
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 208 MRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266
M KG + N Y VI GL R+ G K+ ++ E+ G SLD YN++I + K G
Sbjct: 266 MALKGLEPNLISYNVVINGLCRE-GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG 324
Query: 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI 326
+AL + +M + + P ++T+ SLI CKAG++ +A+E QM+ +G P+ + +
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT 384
Query: 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386
T++ + G + + M D G Y L++ + G+ D + +K +
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 387 GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
GL P + + + + + ++ ++V + M +GI+P+ + + LI F + KEA
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
+Y M +G+ PD TY+ L+ A+ K +++ +M G PD +L +
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Query: 507 LVVLEQRRCKQRLDIFVFH 525
L + R +RL + +F+
Sbjct: 565 LNKQSRTREAKRLLLKLFY 583
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 192/408 (47%), Gaps = 34/408 (8%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148
K G + A + +Q GF SY SLI A A+ GR EA +F++M G P L
Sbjct: 185 KEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLI 244
Query: 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM 208
YN++L F K MG N+ T ++ +M
Sbjct: 245 TYNVILNVFGK----------------MGTPWNKITS------------------LVEKM 270
Query: 209 RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268
+S G +++ Y +I + + ++A + EE++ G S D+ YN+++D +GK
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328
EA++V +M P IVT+NSLI + + G + +A+EL QM E+G PD + T+
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388
+S GK + FE M++ G + + +YG G+F + + + + GL
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448
P + L + Q G+ + V + M+ G P N LI+A+ G +++A++
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510
Query: 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
VY M D G++PDL TY+T++ A R + + ++ +ME C P+
Sbjct: 511 VYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPN 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/469 (26%), Positives = 224/469 (47%), Gaps = 15/469 (3%)
Query: 73 EEFSGNSYNKSIQYCCKLGDI--DEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE 130
+FSG Y+ +L D+ D+A+ L M PS + ++ L+ A+A + +
Sbjct: 40 RDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL 99
Query: 131 ADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190
++ ++M G + L Y+IL+ F ++ L L +L M +G + T LL+
Sbjct: 100 VISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLN 159
Query: 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREMGLS 249
+ R+ D ++ +M G+Q +SF + +I GL+R N +AV +V+ + G
Sbjct: 160 GFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHN-RASEAVALVDRMVVKGCQ 218
Query: 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309
D Y +++ K G++ AL + +KM+Q I P +V +N++I C +V AL L
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ 369
FT+M +G P+ + ++I CL G+W + +M +R ++ L+D + +
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM 429
G+ + E+ + + P + L N + ++ + +LM + PN+V
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489
N LI F A + E + ++ M G+ + VTY+TL+ F +A++ ++KQM
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 490 SSGCTPDRKARQIL----------QSALVVLEQ-RRCKQRLDIFVFHVL 527
S G PD IL ++ALVV E +R K DI+ ++++
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIM 507
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 197/419 (47%)
Query: 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C G + EA+AL+ +M + P ++ ++LI L GR EA + MV +GF P
Sbjct: 151 CLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y +L K G L L ME+ I + Y I++D G DD + NE
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M KG + + Y +IG ++G W ++ E+ + D ++++ID F K G+
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
L+EA E++ +M I PD +T+NSLI CK + +A ++F M +G PD +
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I+ + + D + F + +G Y LV + Q G+ +E + G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ PS + IL + G + +++ + M+ + + + N++I+ A K +A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
S++ + D G+ PD+VTY+ ++ + + ++++M+ GCTPD IL A
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 208/440 (47%), Gaps = 11/440 (2%)
Query: 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C I EA+AL+ QM +G+ P ++++ +L+ L + EA A+ + MV G P L
Sbjct: 146 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 205
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y ++ G K+G L LL ME I + Y ++D +DD + E
Sbjct: 206 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M +KG + + F Y +I + G W A ++ ++ E ++ + +NS+ID F K G+
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
L+EA ++F++M Q SI P+IVT+NSLI C + +A ++FT M + PD + T
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I+ + K + F +M RG Y L+ + Q + + + +G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ P+ + L + + G E+ + V + ++ +EP++ N++ AGK ++
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL---- 503
++ + G+ PD++ Y+T++ F + + ++ +M+ G PD L
Sbjct: 506 DLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565
Query: 504 -------QSALVVLEQRRCK 516
SA ++ E R C+
Sbjct: 566 LRDGDKAASAELIKEMRSCR 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/441 (26%), Positives = 211/441 (47%), Gaps = 7/441 (1%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138
SY I K GD D+A + +M G P ++Y S+I AL +A + M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198
V G P YN +L G+ G L M G+ + TY +L+DY GR
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317
Query: 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI 258
+ I + M +G + YG ++ Y G + G+++ + G+ D +++ +
Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377
Query: 259 IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318
I + K G++ +A+ VF KM+Q+ + P+ VT+ ++I CK+G V A+ F QM ++G
Sbjct: 378 ICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 437
Query: 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEE 378
P ++ ++I L KW+ ++ M DRG + ++D + + GR + E+
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 497
Query: 379 CIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438
+ G++P+ + L N Y G ++ +K+L M G++PN V + LIN +
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557
Query: 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498
+ ++AL ++ M+ G+SPD++TY+ +++ + ++ E+Y ++ SG
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG------ 611
Query: 499 ARQILQSALVVLEQRRCKQRL 519
QI S ++ CK +L
Sbjct: 612 -TQIELSTYNIILHGLCKNKL 631
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 209/444 (47%), Gaps = 35/444 (7%)
Query: 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C I EA+AL+ QM + + P+++++ +LI L + EA A+ MV G P L
Sbjct: 161 CHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 220
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y ++ G K+G + L LL ME I + Y ++D N ++D + E
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M +KG + N Y +I + G W A ++ ++ E ++ + ++++ID F K G+
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 268 LVEALEVFEKMQQESIRPDI-----------------------------------VTWNS 292
LVEA +++++M + SI PDI VT+N+
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352
LI+ CKA V + +ELF +M ++G + + T+I L + G D+ +K F+ M G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412
Y+IL+D +YG+ L+ ++P + I+ + G E
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472
+ + +G++PN+++ +I+ F G +EA +++ MK+ G P+ TY+TL++A
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580
Query: 473 IRAKKFHKVPEIYKQMESSGCTPD 496
+R E+ K+M S G D
Sbjct: 581 LRDGDKAASAELIKEMRSCGFVGD 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 200/420 (47%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138
SY+ + C+ G++D+ L+ M+ G P+S Y S+I L + + EA+ F EM
Sbjct: 283 SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 342
Query: 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198
+ G P Y L+ GF K+G + S+ M I + TY ++ G +
Sbjct: 343 IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402
Query: 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI 258
+ + +EM KG + +S + ++I Y G K A + + + G S + Y ++
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462
Query: 259 IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318
ID K G+L A E+ +M + ++P+I T+NS++ CK+G++ +A++L + + G
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522
Query: 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEE 378
D + T++ + G+ D ++ + M +G + +L++ + +G D E+
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582
Query: 379 CIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438
+ + +G+ P+ + F L Y + + + + M G+ P+ L+
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642
Query: 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498
A KEA ++ MK G S + TYS L+K F++ KKF + E++ QM G D++
Sbjct: 643 KARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 255557939 | 498 | pentatricopeptide repeat-containing prot | 0.855 | 0.913 | 0.729 | 0.0 | |
| 359490014 | 494 | PREDICTED: pentatricopeptide repeat-cont | 0.859 | 0.925 | 0.708 | 0.0 | |
| 356540373 | 881 | PREDICTED: pentatricopeptide repeat-cont | 0.853 | 0.515 | 0.673 | 0.0 | |
| 356495758 | 554 | PREDICTED: pentatricopeptide repeat-cont | 0.872 | 0.837 | 0.653 | 1e-178 | |
| 147778635 | 466 | hypothetical protein VITISV_005528 [Viti | 0.813 | 0.929 | 0.665 | 1e-176 | |
| 410129734 | 517 | bvCRP-1 [Beta vulgaris] | 0.943 | 0.970 | 0.583 | 1e-169 | |
| 297801170 | 448 | hypothetical protein ARALYDRAFT_330235 [ | 0.806 | 0.957 | 0.620 | 1e-159 | |
| 297725255 | 492 | Os06g0710800 [Oryza sativa Japonica Grou | 0.849 | 0.918 | 0.573 | 1e-155 | |
| 357123699 | 492 | PREDICTED: pentatricopeptide repeat-cont | 0.845 | 0.914 | 0.567 | 1e-153 | |
| 326527817 | 491 | predicted protein [Hordeum vulgare subsp | 0.828 | 0.898 | 0.563 | 1e-144 |
| >gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/455 (72%), Positives = 397/455 (87%)
Query: 62 SIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA 121
S+ P ++G+E SG SYN I CCK+GD+D+AM LLA MQ+LGFHPSS+SY LIE
Sbjct: 6 SVTMPTNESTGQELSGESYNSCICDCCKVGDVDKAMTLLADMQSLGFHPSSLSYTCLIET 65
Query: 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN 181
L SVGRTLEA+A++QEM+CFG P+L+ YNI+LRGFLKKGLL + R+L +++D+G+ RN
Sbjct: 66 LLSVGRTLEAEALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRN 125
Query: 182 QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241
QETYEILLDY+VNAGRL+DTW +INEM+ KGFQLNSFVY KVIGLYRDNGMWKKA+GI+E
Sbjct: 126 QETYEILLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIE 185
Query: 242 EIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG 301
EIREMG+ LD+ IYNSIIDTFGKYGEL EALEV MQQ+ I PDIVTWNSLIRWHCKAG
Sbjct: 186 EIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAG 245
Query: 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361
+++KALELF++MQ QG YPDPKI +TIIS L E GKW++I++NF+ MK G+ K GAIYA
Sbjct: 246 NLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYA 305
Query: 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421
ILVDIYGQYGRF+D EECI+ALK EG+ PS SMFC+LANAYAQQGLCEQTVKVLQLME E
Sbjct: 306 ILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAE 365
Query: 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481
GIEPNL+MLNVLINAFG+AG+++EALS+YH MK+ GISPD+VTYSTLMKA+IRA+KF +V
Sbjct: 366 GIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEV 425
Query: 482 PEIYKQMESSGCTPDRKARQILQSALVVLEQRRCK 516
PEIY +MESSGCTPD+KAR+ILQ+AL+VL +R CK
Sbjct: 426 PEIYSEMESSGCTPDKKAREILQAALMVLGRRNCK 460
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/457 (70%), Positives = 386/457 (84%)
Query: 60 NLSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119
+S++ S +GEE SG YN I+ C++GD+D+AM LLAQM+ALGF S SY ++I
Sbjct: 6 QVSVEEVSISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVI 65
Query: 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179
EAL SVGRTLEA+AIF+EMV G LR YN++LR L+KGLL L ++L M+ +GI
Sbjct: 66 EALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIG 125
Query: 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239
RN+ TYE L+DY+ AGRL+D W +I EM GF +SFVY KVIG+YRDNGMWKKA+ I
Sbjct: 126 RNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEI 185
Query: 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
V EIREMG+SLD++IYNSIIDTFGK GEL EALEVFEKMQ+E ++PDI+TWNSLI+WHCK
Sbjct: 186 VREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCK 245
Query: 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359
AGDV KALELF++MQE+G YPDPKIFITIIS LGE GKWDVIK+NFENMK RGH + GAI
Sbjct: 246 AGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAI 305
Query: 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419
YAILVDIYGQYGRF+ PEECI+ALK EG+QPS SMFC+LANAYAQQGLCEQTVKVLQLME
Sbjct: 306 YAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLME 365
Query: 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479
EGIEPNL+MLN+LINAFG+AG++ EALSVYH +KD GISPD+VTYSTLMKA IRA+KF
Sbjct: 366 TEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKACIRARKFD 425
Query: 480 KVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCK 516
KVPEIY++MES+GCTPDRKAR++LQ+AL+VL+QR CK
Sbjct: 426 KVPEIYEEMESAGCTPDRKAREMLQTALLVLQQRHCK 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/457 (67%), Positives = 377/457 (82%), Gaps = 3/457 (0%)
Query: 59 KNLSIKSPD-GSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS 117
K +SPD G N EE S N ++ I CCK GD+D AM+LL+QM+A GFH SS SYA
Sbjct: 67 KTTLFRSPDIGEN--EELSSNLCSQLICECCKEGDLDRAMSLLSQMEAKGFHLSSTSYAC 124
Query: 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177
LIEAL +VGRT EAD +F+EMVC+G+ PKL Y+ LLRGFLKKGLLGL + +L M+D+G
Sbjct: 125 LIEALGNVGRTSEADMLFKEMVCYGYKPKLNLYHSLLRGFLKKGLLGLANGVLKEMDDLG 184
Query: 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237
I R++ETY+I LDY+V AGRL+DTW INEM+ KGF LNSF+Y KV+G+YRDNGMWKKA+
Sbjct: 185 IWRSKETYQIFLDYYVGAGRLEDTWSTINEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAI 244
Query: 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH 297
++EEIRE G+SLD I NSIIDTFGKYGEL EAL++F+KMQ+E +RP+IVTWNSLI+WH
Sbjct: 245 EVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWH 304
Query: 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357
CK GD KA LFT MQEQG YPDPKIF+TIISCLGE GKWD+IKK FE+MK RG+ + G
Sbjct: 305 CKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYG 364
Query: 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQL 417
A+YA+LVDIYGQYG+F++ EC+ ALK EG+ S S+FC+LANAYAQQGLCEQ + VLQ+
Sbjct: 365 AVYAVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQI 424
Query: 418 MEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477
ME EGIEPN+VMLN+LINAFG AG+Y EA+SVYH +K+ G+SPD+VTY+TLMKAFIRAKK
Sbjct: 425 MEAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKK 484
Query: 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRR 514
F +VP IYK+ME+ GCTPDRKARQ+LQ AL +++ R
Sbjct: 485 FDEVPIIYKEMENDGCTPDRKARQMLQVALTLIDHDR 521
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495758|ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 306/468 (65%), Positives = 377/468 (80%), Gaps = 4/468 (0%)
Query: 48 VKE-GYAYSLGNKNLSIKSPD-GSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQA 105
VKE G + +K + K PD G N EE S N ++ I CCK GD+D AM+LL+QM+A
Sbjct: 52 VKEVGSEFDSKSKTMLFKIPDIGEN--EELSSNLCSQFICECCKEGDLDRAMSLLSQMEA 109
Query: 106 LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165
GFH SS +YA LIEAL +VGRT EAD +F+EM+C G+ PKL FY LLRGFLKKGLLGL
Sbjct: 110 KGFHLSSTAYACLIEALGNVGRTSEADMLFKEMICDGYKPKLNFYTSLLRGFLKKGLLGL 169
Query: 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG 225
+ +L M+ GI R++ETY+I LDY+V AGRL+DTW IN M+ KGF LNSFVY KV+G
Sbjct: 170 ANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQKGFPLNSFVYSKVVG 229
Query: 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP 285
+YRDNGMWKKA+ ++EEIRE G+SLD I NSIIDTFGKYGEL EAL++F+KMQ+E +RP
Sbjct: 230 IYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRP 289
Query: 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345
+IVTWNSLI+WHCK GD K+ LFT MQEQG YPDPKIF+TIISC+GE GKW +IKK F
Sbjct: 290 NIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIISCMGEQGKWGIIKKYF 349
Query: 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ 405
E+MK RG+ + GA+YA+LVDIYGQYG+F++ EC+ ALK EG+ S S+FC+LANAYAQQ
Sbjct: 350 ESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCVLANAYAQQ 409
Query: 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTY 465
GLCEQ + VLQ+ME EGIEPN+VMLN+LINAFG AG+Y EA+SVYH +K+ G+SPD+VTY
Sbjct: 410 GLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHIKESGVSPDVVTY 469
Query: 466 STLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
+TLMKAFIRAKKF +VP IYK+ME+ CTPDRKARQ+LQ AL+ E++
Sbjct: 470 TTLMKAFIRAKKFDEVPIIYKEMENDRCTPDRKARQMLQVALMFEERK 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/457 (66%), Positives = 364/457 (79%), Gaps = 24/457 (5%)
Query: 60 NLSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119
+S++ S +GEE SG YN I+ C++GD+D+AM LLAQM+ALGF S SY ++I
Sbjct: 25 QVSVEEVSISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVI 84
Query: 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179
EAL SVGRTLEA+AIF+EMV G LR YN++LR L+KGLL L ++L M+ +GI
Sbjct: 85 EALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIG 144
Query: 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239
RN+ TYE L+DY+ AGRL+D W +I EM GF +SFVY KVIG+YRDNGMWKKA+ I
Sbjct: 145 RNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEI 204
Query: 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
V EIREMG+SLD++IYNSIIDTFGK GEL EALEVFEKMQ+E ++PDI+TWNSLI+WHCK
Sbjct: 205 VREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCK 264
Query: 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359
AGDV KALELF++MQE+G YPDPKIFITIIS LGE GKWDVIK+NFENMK RGH + GAI
Sbjct: 265 AGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAI 324
Query: 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419
YAILVDIYGQYGRF+ PEECI+ALK EG+QPS SMFC+LANAYAQQGLCEQTVKVLQLME
Sbjct: 325 YAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLME 384
Query: 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479
EGIEPNL+MLN+LINAFG+AG++ EALSVYH +KD
Sbjct: 385 TEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKD------------------------ 420
Query: 480 KVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCK 516
VPEIY++MES+GCTPDRKAR++LQ+AL+VL+QR CK
Sbjct: 421 TVPEIYEEMESAGCTPDRKAREMLQTALLVLQQRHCK 457
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|410129734|dbj|BAM64814.1| bvCRP-1 [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/507 (58%), Positives = 381/507 (75%), Gaps = 5/507 (0%)
Query: 6 TISLLPIHGTSPLSVFFSTHSSSREHAGHKLNSSCHSGMRRCVKEGYAYSLGN-KNLSIK 64
T S+ P + S L F H R + SC S + G SL N N K
Sbjct: 13 TPSIFPRYPISFLISSFYPHFPKRTNKPSIYTCSCFS----IFQIGTTKSLENLPNSYNK 68
Query: 65 SPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124
S G+E S Y++ I + CK G +D+AM+ ++++QALG P+ Y LIE L +
Sbjct: 69 SFMEYPIGKELSLEMYSEKISHYCKKGYVDKAMSCISEIQALGLCPNLFCYLCLIEGLGN 128
Query: 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184
VGRTLE + +FQEM+ G P + +N++LRGFL+KGL L +R L VMED+G+C+NQET
Sbjct: 129 VGRTLEVEMVFQEMLYLGLRPNIVVFNVMLRGFLRKGLYKLANRALRVMEDLGMCKNQET 188
Query: 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244
EI LDY+V+ RL DTW II +M+ KG+QLNSF Y +VI LYRDNGMWKKA+ IV EI
Sbjct: 189 LEIFLDYYVSGRRLSDTWRIIGDMKRKGYQLNSFAYSRVIELYRDNGMWKKAMEIVGEIS 248
Query: 245 EMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304
EMG+ +DR+IYNSIIDTFGKYGEL EAL+V KM++E I PDI+TWNSLI+WHCKAGD
Sbjct: 249 EMGVPMDRRIYNSIIDTFGKYGELDEALKVLVKMRREEIVPDIMTWNSLIKWHCKAGDHM 308
Query: 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364
KAL+LFT+MQ+QG YPDPKIFI +IS LG LGKWD++++NFE MK RGH K GA+YA+LV
Sbjct: 309 KALDLFTEMQDQGLYPDPKIFIILISQLGNLGKWDLLRENFEKMKYRGHKKSGAVYAVLV 368
Query: 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424
DIYGQYG+F+ E+CI+AL+ EG+Q S +++ ++ANAYAQQGLCE+TVKVLQ+ME EGIE
Sbjct: 369 DIYGQYGKFQGAEDCISALRAEGVQMSSNIYSVMANAYAQQGLCEETVKVLQVMEAEGIE 428
Query: 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI 484
PNL+MLN+LINAFG+AG++ EALS+Y + + GI+PD+VTY+TLMKA IRAKKF KVPE+
Sbjct: 429 PNLIMLNILINAFGIAGRHLEALSIYDHIIENGINPDIVTYTTLMKALIRAKKFTKVPEL 488
Query: 485 YKQMESSGCTPDRKARQILQSALVVLE 511
Y+ ME +GCTPDRKAR++LQ AL+ L+
Sbjct: 489 YQHMELAGCTPDRKAREMLQIALMHLQ 515
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp. lyrata] gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/432 (62%), Positives = 349/432 (80%), Gaps = 3/432 (0%)
Query: 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV 139
YN+ I+YCC+ G+I+EAM+L+A++ +LG HP +SY SLIE LAS+GRTLEADA+FQE+V
Sbjct: 2 YNRWIRYCCRTGEINEAMSLVAEIDSLGSHPDPLSYVSLIETLASLGRTLEADALFQEVV 61
Query: 140 CFGFNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197
F N +R YN LL G+L+KG L L R+L M++ + +NQET EILL+Y+V+AGR
Sbjct: 62 RFRINGSYSVRLYNALLSGYLRKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGR 121
Query: 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257
L+++W ++NEM+ + F+LNSFVYGK+I +YRDNGMWKKA+GIVEEI+E+GL +D +IYNS
Sbjct: 122 LEESWRVVNEMKKRMFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYNS 181
Query: 258 IIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316
IIDTFGKYGEL EAL+V EKMQ S +P+I TWNSLIRWHC G + ALELFT MQ+Q
Sbjct: 182 IIDTFGKYGELDEALDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQ 241
Query: 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376
G YPDP++F+ +I+ LGE G W++I K+FE++K + H AIYA LV I GQ+G F+D
Sbjct: 242 GLYPDPRMFVNLITRLGENGNWNMIDKHFESIKCKEHKDTRAIYAALVQIIGQFGSFQDV 301
Query: 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436
EE + LK +G+ PS ++FC ANAYAQQGL +QTVKVL++ME EGIEPNL+MLNVLINA
Sbjct: 302 EELVGKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNVLINA 361
Query: 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
FG AGK+ EALS+YH +K+ G +PD+VTYSTLMKAF RAKK+ KVPEI+++ME+SGCT D
Sbjct: 362 FGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAKKYEKVPEIFREMEASGCTAD 421
Query: 497 RKARQILQSALV 508
RKARQ+LQ+A +
Sbjct: 422 RKARQLLQNAFM 433
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297725255|ref|NP_001174991.1| Os06g0710800 [Oryza sativa Japonica Group] gi|53792631|dbj|BAD53645.1| putative crp1 protein [Oryza sativa Japonica Group] gi|215693375|dbj|BAG88757.1| unnamed protein product [Oryza sativa Japonica Group] gi|255677390|dbj|BAH93719.1| Os06g0710800 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/453 (57%), Positives = 334/453 (73%), Gaps = 1/453 (0%)
Query: 61 LSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIE 120
++ ++ G +E SY++ IQ+ D+ ++ LLA MQA G PS +YA LI
Sbjct: 36 VACRATAGPVGSQERPWESYDRGIQHHAG-SDLASSLRLLADMQAAGLRPSGAAYARLIR 94
Query: 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR 180
ALA GRTLEA+A+ EM G P YN LL G L L L RLL+ M D G+ R
Sbjct: 95 ALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVAR 154
Query: 181 NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240
N+ TY +LL+ + AGRL+D+W ++ EM+ +G +L++ Y ++ LYRDNGMWKKA ++
Sbjct: 155 NRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLI 214
Query: 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300
E++E+G+ LD +IYN +IDTFGKYG+L +A +VF+KM E ++PDI TWNSLIRWHC+
Sbjct: 215 MEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRV 274
Query: 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360
G+ +AL F MQE+G YPDPKIF+TIIS LGE GKWD IKK F M++RG + GA+Y
Sbjct: 275 GNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVY 334
Query: 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420
A+LVDIYGQYG FRD +C+AALK E LQ S S+FC+LANAYAQQGLCEQTV VLQLME
Sbjct: 335 AVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEA 394
Query: 421 EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHK 480
EGIEPNLVMLN+LINAFG AG++ EAL+V +KD G+SPD+VTY+TLMKAF+RAKKF K
Sbjct: 395 EGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEK 454
Query: 481 VPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
V E+YK+ME +GCTPDRKAR++L A +VLEQR
Sbjct: 455 VSEVYKEMEGAGCTPDRKAREMLNDASIVLEQR 487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/451 (56%), Positives = 331/451 (73%), Gaps = 1/451 (0%)
Query: 65 SPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124
S + +E SYN+ IQ D+ ++ +LA M+A G PS+ +YA LI ALA
Sbjct: 42 STAADHHRQERPWESYNRDIQPHAS-SDLAHSLHVLADMEAAGMRPSAAAYARLIRALAR 100
Query: 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184
GRTLEA+A+ EM G P YN LL G L + L L RLL+ M D G+ RN+ T
Sbjct: 101 AGRTLEAEALLLEMRHLGLRPDAAHYNALLEGLLARAHLCLADRLLLQMADDGVARNRRT 160
Query: 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244
Y +LLD + AGRL+D+W ++ EM+ +G QL++ Y ++ LYRDNGMWKKA ++ E++
Sbjct: 161 YMLLLDAYARAGRLEDSWWVLGEMKRRGIQLDTAGYSTLVRLYRDNGMWKKATDLIMEMQ 220
Query: 245 EMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304
E+G+ LD +IYN +IDTFGKYG+L +A +FEKM+ E I+PDI TWN+LIRWHC+ G++
Sbjct: 221 ELGVELDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIKPDIATWNALIRWHCRVGNMK 280
Query: 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364
+AL F MQE+G YPDPKIF++IIS LGE GKWD +KK F+ M++RG + GA+YA+LV
Sbjct: 281 RALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDELKKLFDKMRNRGLKESGAVYAVLV 340
Query: 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424
DIYGQYGRFRD EC+AALK E L S S+FC+LANAYAQQGLCEQTV VLQLME EGIE
Sbjct: 341 DIYGQYGRFRDAHECVAALKAEELHLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIE 400
Query: 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI 484
PNLVMLN+LINAF AG++ EA++V+ +KD G+SPD+VTY+TLMK F+R KKF KV E+
Sbjct: 401 PNLVMLNLLINAFSTAGRHLEAVAVFQHIKDSGMSPDVVTYTTLMKGFMRVKKFEKVSEV 460
Query: 485 YKQMESSGCTPDRKARQILQSALVVLEQRRC 515
Y +ME +GCTPDRKAR++L A V LEQR C
Sbjct: 461 YNEMERAGCTPDRKAREMLHDASVTLEQRGC 491
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/442 (56%), Positives = 326/442 (73%), Gaps = 1/442 (0%)
Query: 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADA 133
E SY++ IQ D+ ++ LLA MQA G PS+ +YA LI ALA GR LEA+A
Sbjct: 50 ERPWESYDRDIQPHAG-SDLARSLQLLADMQAAGMRPSAAAYARLIRALARAGRALEAEA 108
Query: 134 IFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193
+ EM G P YN LL G L + L L RLL+ M D G+ RN+ TY +LLD +
Sbjct: 109 LLLEMRHLGLRPDAAHYNALLEGLLARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYA 168
Query: 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQ 253
AGRL+D+W ++ EM+ G +L++ Y ++ LYRD+GMWKKA ++ E++E+G+ LD +
Sbjct: 169 RAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVK 228
Query: 254 IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313
IYN +IDTFGKYG+L +A ++FEKM+ + I+PDI TWN+LIRWHC+ G++ +AL M
Sbjct: 229 IYNGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAM 288
Query: 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRF 373
QE+G YPDPKIFITII+ LGE GKWD +K+ F+ M++RG + GAIYA+LVDIYGQYG F
Sbjct: 289 QEEGMYPDPKIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHF 348
Query: 374 RDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVL 433
RD +EC+AALK E LQ S S+FC+LANAYAQQGLCEQTV VLQLME EGIEPNLVMLN+L
Sbjct: 349 RDAQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLL 408
Query: 434 INAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493
INAF AG++ EA +V+ +KD G+SPD+VTY+TLMKAF+R K++ KV E+Y +ME +GC
Sbjct: 409 INAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGC 468
Query: 494 TPDRKARQILQSALVVLEQRRC 515
TPDRKAR++L A V +EQ C
Sbjct: 469 TPDRKAREMLHDASVTMEQMGC 490
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.812 | 0.609 | 0.400 | 1e-84 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.819 | 0.583 | 0.255 | 7.9e-41 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.710 | 0.461 | 0.262 | 1.6e-37 | |
| TAIR|locus:2060226 | 624 | AT2G32630 "AT2G32630" [Arabido | 0.721 | 0.615 | 0.259 | 1.6e-36 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.783 | 0.661 | 0.248 | 1.7e-36 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.781 | 0.672 | 0.245 | 7.2e-36 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.768 | 0.649 | 0.237 | 3.8e-33 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.783 | 0.679 | 0.239 | 9.1e-33 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.781 | 0.570 | 0.244 | 1.1e-32 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.776 | 0.451 | 0.240 | 1.5e-32 |
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 173/432 (40%), Positives = 252/432 (58%)
Query: 81 NKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N I K GD + G + + S+I ALA GRTLEA+A+F+E+
Sbjct: 273 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 332
Query: 141 FGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
G P+ R YN ME G+ ++ TY +L+D +VNAGR +
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 392
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
+++ EM + Q NSFV+ +++ +RD G W+K +++E++ +G+ DRQ YN +ID
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
TFGK+ L A+ F++M E I PD VTWN+LI HCK G A E+F M+ +G P
Sbjct: 453 TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLP 512
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
+ +I+ G+ +WD +K+ MK +G + LVD+YG+ GRF D EC+
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECL 572
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
+K GL+PS +M+ L NAYAQ+GL EQ V ++M +G++P+L+ LN LINAFG
Sbjct: 573 EEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500
+ EA +V MK+ G+ PD+VTY+TLMKA IR KF KVP +Y++M SGC PDRKAR
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKAR 692
Query: 501 QILQSALVVLEQ 512
+L+SAL ++Q
Sbjct: 693 SMLRSALRYMKQ 704
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 7.9e-41, P = 7.9e-41
Identities = 112/439 (25%), Positives = 204/439 (46%)
Query: 89 KLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLE-ADAIFQEMVCFGFNPKL 147
+L ID+ GF P +SY ++++A R + A+ +F+EM+ +P +
Sbjct: 146 RLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNV 205
Query: 148 RFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
YNI ME G N TY L+D + ++DD + ++
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 208 MRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266
M KG + N Y VI GL R+ G K+ ++ E+ G SLD YN++I + K G
Sbjct: 266 MALKGLEPNLISYNVVINGLCRE-GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG 324
Query: 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI 326
+AL + +M + + P ++T+ SLI CKAG++ +A+E QM+ +G P+ + +
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT 384
Query: 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386
T++ + G + + M D G Y L++ + G+ D + +K +
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 387 GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
GL P + + + + + ++ ++V + M +GI+P+ + + LI F + KEA
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
+Y M +G+ PD TY+ L+ A+ K +++ +M G PD +L +
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Query: 507 LVVLEQRRCKQRLDIFVFH 525
L + R +RL + +F+
Sbjct: 565 LNKQSRTREAKRLLLKLFY 583
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 101/385 (26%), Positives = 180/385 (46%)
Query: 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMED 175
A +I L GR A +F + GF+ + Y ME+
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 176 MGICRNQETYEILLDYHVNAGRLDDTW----LIINEMRSKGFQLNSFVYGKVIGLYRDNG 231
G TY ++L+ G++ W ++ +M+S G +++ Y +I +
Sbjct: 237 DGCKPTLITYNVILNVF---GKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGS 293
Query: 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN 291
+ ++A + EE++ G S D+ YN+++D +GK EA++V +M P IVT+N
Sbjct: 294 LHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYN 353
Query: 292 SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351
SLI + + G + +A+EL QM E+G PD + T++S GK + FE M++
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413
Query: 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411
G + + +YG G+F + + + + GL P + L + Q G+ +
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473
Query: 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471
V + M+ G P N LI+A+ G +++A++VY M D G++PDL TY+T++ A
Sbjct: 474 SGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Query: 472 FIRAKKFHKVPEIYKQMESSGCTPD 496
R + + ++ +ME C P+
Sbjct: 534 LARGGMWEQSEKVLAEMEDGRCKPN 558
|
|
| TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 100/386 (25%), Positives = 182/386 (47%)
Query: 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVM 173
S ++E L G ++ + +E G P+ YN VM
Sbjct: 226 SLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVM 285
Query: 174 EDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233
+ G+ N+ TY +L++ V G++ D + +EMR +G + + VY +I G
Sbjct: 286 KKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNM 345
Query: 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSL 293
K+A + +E+ E GLS Y ++ID K GE+ A + +MQ + + V +N+L
Sbjct: 346 KRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTL 405
Query: 294 IRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353
I +C+ G V +A ++ M+++GF D TI SC L ++D K+ M + G
Sbjct: 406 IDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGV 465
Query: 354 GKIGAI-YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412
K+ + Y L+D+Y + G + + + +G+QP+ + ++ AY +QG ++
Sbjct: 466 -KLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524
Query: 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472
K+ ME G++P+ LI+ +A EA+ ++ M G+ + VTY+ ++
Sbjct: 525 KLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGL 584
Query: 473 IRAKKFHKVPEIYKQMESSGCTPDRK 498
+A K + +Y +M+ G T D K
Sbjct: 585 SKAGKSDEAFGLYDEMKRKGYTIDNK 610
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 107/430 (24%), Positives = 199/430 (46%)
Query: 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXX 169
PS + ++ L+ A+A + + ++ ++M G + L Y+I
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 170 XMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYR 228
M +G + T LL+ + R+ D ++ +M G+Q +SF + +I GL+R
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288
N +AV +V+ + G D Y +++ K G++ AL + +KM+Q I P +V
Sbjct: 199 HNRA-SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348
+N++I C +V AL LFT+M +G P+ + ++I CL G+W + +M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408
+R ++ L+D + + G+ + E+ + + P + L N +
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTL 468
++ + +LM + PN+V N LI F A + E + ++ M G+ + VTY+TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 469 MKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL----------QSALVVLEQ-RRCKQ 517
+ F +A++ ++KQM S G PD IL ++ALVV E +R K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 518 RLDIFVFHVL 527
DI+ ++++
Sbjct: 498 EPDIYTYNIM 507
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 102/416 (24%), Positives = 182/416 (43%)
Query: 88 CKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C G + E P ++ ++LI L GR EA + MV +GF P
Sbjct: 151 CLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210
Query: 148 RFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y ME+ I + Y I++D G DD + NE
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M KG + + Y +IG ++G W ++ E+ + D ++++ID F K G+
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
L+EA E++ +M I PD +T+NSLI CK + +A ++F M +G PD +
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I+ + + D + F + +G Y LV + Q G+ +E + G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ PS + IL + G + +++ + M+ + + + N++I+ A K +A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL 503
S++ + D G+ PD+VTY+ ++ + + ++++M+ GCTPD IL
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 3.8e-33, P = 3.8e-33
Identities = 97/409 (23%), Positives = 181/409 (44%)
Query: 88 CKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C I E G+ P+++++ +LI L + EA A+ MV G P L
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221
Query: 148 RFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y + ME + Y ++D +DD + E
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M +KG + N Y +I + G W A ++ ++ E ++ D ++++ID F K G+
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
LVEA +++++M + SI P IVT++SLI C + +A ++F M + +PD + T
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I + + + + F M RG Y IL+ Q G +E + +G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ P+ + L + + G E+ + V + ++ +EP + N++I AGK ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
++ + G+ PD+V Y+T++ F R + ++K+M+ G P+
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 9.1e-33, P = 9.1e-33
Identities = 103/430 (23%), Positives = 195/430 (45%)
Query: 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXX 169
PS + ++ L+ A+A + + + ++M G + L YNI
Sbjct: 63 PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122
Query: 170 XMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYR 228
M +G + T LL+ + R+ + ++++M G+Q ++ + ++ GL++
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182
Query: 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288
N +AV +VE + G D Y ++I+ K GE AL + KM++ I D+V
Sbjct: 183 HNKA-SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 241
Query: 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348
++++I CK V AL LFT+M +G PD + ++ISCL G+W + +M
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408
+R + L+D + + G+ + E+ + + P+ + L N +
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTL 468
++ ++ LM + P++V N LIN F A K + + ++ M G+ + VTY+TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 469 MKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL----------QSALVVLEQ-RRCKQ 517
+ F +A ++KQM S G P+ L + A+VV E ++ K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 518 RLDIFVFHVL 527
DI+ ++++
Sbjct: 482 EPDIYTYNIM 491
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 102/418 (24%), Positives = 185/418 (44%)
Query: 81 NKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N + CK G +++ G +P ++Y +LI A +S G EA + M
Sbjct: 239 NIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG 298
Query: 141 FGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
GF+P + YN M G+ + TY LL G + +
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
T + ++MRS+ + + ++ L+ +G KA+ ++E GL D IY +I
Sbjct: 359 TEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
+ + G + A+ + +M Q+ D+VT+N+++ CK + +A +LF +M E+ +P
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
D +I +LG + F+ MK++ Y L+D +G+ G +E
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
A + + + P+ + IL NA +G + +V M + I+P +++ N +I + +
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS--GCTPD 496
G + S M G PD ++Y+TL+ F+R + K + K+ME G PD
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 101/420 (24%), Positives = 182/420 (43%)
Query: 80 YNKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMV 139
Y I C+ D+D G + ++Y LI L R EA +F +M
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK 315
Query: 140 ---CFGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAG 196
CF P +R Y + ME+ GI N TY +L+D +
Sbjct: 316 DDECF---PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256
+ + ++ +M KG N Y +I Y GM + AV +VE + LS + + YN
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432
Query: 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316
+I + K + +A+ V KM + + PD+VT+NSLI C++G+ A L + M ++
Sbjct: 433 ELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376
G PD + ++I L + + + F++++ +G +Y L+D Y + G+ +
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436
+ + + P+ F L + G ++ + + M G++P + +LI+
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611
Query: 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
G + A S + M G PD TY+T ++ + R + ++ +M +G +PD
Sbjct: 612 LLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-10 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 93/409 (22%), Positives = 186/409 (45%), Gaps = 7/409 (1%)
Query: 91 GDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF 149
G I + + LL M+ G I +A +A EA F +++ NP L
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-FAKLI---RNPTLST 439
Query: 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209
+N+L+ + R+L ++++ G+ + + Y L+ +G++D + + +EM
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 210 SKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269
+ G + N +G +I G KA G +R + DR ++N++I G+ G +
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 270 EALEVFEKMQQES--IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
A +V +M+ E+ I PD +T +L++ AG V +A E++ + E P+++
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
++ + G WD +++MK +G ++ LVD+ G G E + + +G
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
++ + L A + ++ +++ + ++ + P + +N LI A + +AL
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
V MK +G+ P+ +TYS L+ A R ++ Q + G P+
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-23
Identities = 66/259 (25%), Positives = 126/259 (48%), Gaps = 9/259 (3%)
Query: 80 YNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQE 137
+N I C + G +D A +LA+M+A P I+ +L++A A+ G+ A ++Q
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 138 MVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQETYEILLDYHVN 194
+ + Y I + +KG L + +DM G+ ++ + L+D +
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFA---LSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254
AG LD + I+ + R +G +L + Y ++G + WKKA+ + E+I+ + L
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314
N++I + +L +ALEV +M++ + P+ +T++ L+ + D L+L +Q +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 315 EQGFYPDPKIFITIIS-CL 332
E G P+ + I CL
Sbjct: 782 EDGIKPNLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-22
Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 10/283 (3%)
Query: 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295
A+ ++ ++E GL D ++Y ++I T K G++ EVF +M + ++ T+ +LI
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMK------ 349
+AG VAKA + M+ + PD +F +IS G+ G D MK
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 350 DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409
D H +GA+ + GQ R + E + ++ + ++ I N+ +Q+G +
Sbjct: 576 DPDHITVGALMKACANA-GQVDRAK---EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469
+ + M+ +G++P+ V + L++ G AG +A + + GI V+YS+LM
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512
A AK + K E+Y+ ++S P L +AL Q
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 6e-22
Identities = 102/465 (21%), Positives = 202/465 (43%), Gaps = 63/465 (13%)
Query: 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTL 129
+SG E N+ + K G + +A L +M + S+ ++I L G
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYR 206
Query: 130 EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189
EA A+F+EM G + + R + ++LR G G +L + G+ + L+
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS 249
D + G ++D + + M K + + ++ Y +G ++A+ + E+R+ G+S
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 250 LD--------------------RQIYNSII---------------DTFGKYGELVEALEV 274
+D +Q + +I D + K+G + +A V
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334
F++M R ++++WN+LI + G KA+E+F +M +G P+ F+ ++S
Sbjct: 383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 335 LGKWDVIKKNFENMKDRGHGKIGAI-YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393
G + + F++M + K A+ YA ++++ G+ G +E A ++ +P+ +
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL---DEAYAMIRRAPFKPTVN 495
Query: 394 MFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450
M+ L A L + L M PE + +V+LN+ + +G+ EA V
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS----SGRQAEAAKVV 551
Query: 451 HLMKDIGIS-PDLVTYSTLMK---AFIRAKKFH-KVPEIYKQMES 490
+K G+S T+ + K +F + H + EIY++++
Sbjct: 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 1e-20
Identities = 86/389 (22%), Positives = 165/389 (42%), Gaps = 26/389 (6%)
Query: 94 DEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152
EA+ L ++A F + +Y +L+EA ++ A++ + GF P N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212
+L +K G+L RL M + RN ++ ++ V+AG + + + EM G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 213 FQLNSFVYGKVIGLYRDNGMWKKAVG--IVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270
+ V+ L G+ G + + + G+ D + ++ID + K G++ +
Sbjct: 220 SDAEPRTF--VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330
A VF+ M +++ V WNS++ + G +AL L+ +M++ G D F +I
Sbjct: 278 ARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP 390
L + K+ + G LVD+Y ++GR D + + L
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL-- 391
Query: 391 SGSMFCILANA----YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
I NA Y G + V++ + M EG+ PN V +++A +G ++
Sbjct: 392 ------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 447 LSVYHLM-KDIGISPDLVTYSTLMKAFIR 474
++ M ++ I P + Y+ +++ R
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 85/429 (19%), Positives = 182/429 (42%), Gaps = 28/429 (6%)
Query: 68 GSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR 127
+ S + N ++ C G +++A+ LL MQ L +Y +L L R
Sbjct: 42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKR 100
Query: 128 TLEA-----DAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ 182
+E G +R N +L F++ G L + M + R+
Sbjct: 101 AVEEGSRVCSRALSSHPSLG----VRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDL 152
Query: 183 ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM---WKKAVGI 239
++ +L+ + AG D+ + + M G + + + + V+ R G + +
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---RTCGGIPDLARGREV 209
Query: 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
+ G LD + N++I + K G++V A VF++M R D ++WN++I + +
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFE 265
Query: 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359
G+ + LELF M+E PD ++IS LG + ++ + G ++
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419
L+ +Y G + + E+ + ++ + +M + Y + GL ++ ++ LME
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI----SGYEKNGLPDKALETYALME 381
Query: 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479
+ + P+ + + +++A G + ++ L + G+ +V + L++ + + K
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 480 KVPEIYKQM 488
K E++ +
Sbjct: 442 KALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 9e-13
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 47/245 (19%)
Query: 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306
G D+ + N ++ K G L++A +F++M + ++ +W ++I AG+ +A
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREA 208
Query: 307 LELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366
LF +M E G +P+ F+ ++ R +G+ A
Sbjct: 209 FALFREMWEDGSDAEPRTFVVML---------------------RASAGLGSARA----- 242
Query: 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426
GQ + LK G+ + C L + Y++ G E V M E
Sbjct: 243 -GQ-------QLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289
Query: 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYK 486
V N ++ + + G +EAL +Y+ M+D G+S D T+S +++ F R E K
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL----EHAK 345
Query: 487 QMESS 491
Q +
Sbjct: 346 QAHAG 350
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 44/272 (16%)
Query: 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306
G+ D + N+++D + + G + A F S D+V+WN L+ + G + A
Sbjct: 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 307 LELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN---FENMKDRGHGKIGAI---- 359
+ELF +M E G PD +T IS L + ++ + F +M+++ I
Sbjct: 574 VELFNRMVESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKYS-----ITPNL 625
Query: 360 --YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA---YAQQGLCEQTVKV 414
YA +VD+ G+ G+ + I + + P +++ L NA + L E +
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNACRIHRHVELGELAAQH 682
Query: 415 LQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD----LVTYSTLMK 470
+ ++P + + +L N + AGK+ E V M++ G++ D V +
Sbjct: 683 IFELDPNSVGYYI----LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738
Query: 471 AFIRAKKFH-KVPEI-------YKQMESSGCT 494
AF+ + H ++ EI Y++M++SG
Sbjct: 739 AFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472
P++V N LI+ + GK +EAL +++ MK GI P++ TYS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-12
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCL 332
PD+VT+N+LI +CK G V +AL+LF +M+++G P+ + +I L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 5e-11
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
YN++ID + K G++ EAL++F +M++ I+P++ T++ LI CK
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 75/315 (23%)
Query: 233 WKKAVGIVEEIREMGLS----LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288
WK+AV + LS L ++ N+++ F ++GELV A VF KM + D+
Sbjct: 98 WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLF 153
Query: 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKW--------DV 340
+WN L+ + KAG +AL L+ +M G PD F ++ G + V
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 341 IKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILAN 400
++ FE D + L+ +Y + G + ++A + P CI N
Sbjct: 214 VRFGFELDVD--------VVNALITMYVKCG------DVVSARLVFDRMPR--RDCISWN 257
Query: 401 A----YAQQGLCEQTVKVLQLMEPEGIEPNLVML-------------------------- 430
A Y + G C + +++ M ++P+L+ +
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 431 ---------NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481
N LI + G + EA V+ M+ + D V+++ ++ + + K
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKA 373
Query: 482 PEIYKQMESSGCTPD 496
E Y ME +PD
Sbjct: 374 LETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-08
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 288 VTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321
VT+N+LI CKAG V +ALELF +M+E+G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA 123
+YN I CK G ++EA+ L +M+ G P+ +Y+ LI+ L
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314
++PD+VT+N+LI C+AG V +A+EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 88/439 (20%), Positives = 164/439 (37%), Gaps = 47/439 (10%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148
K GD+ A + +M IS+ ++I G LE +F M +P L
Sbjct: 234 KCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM 208
++ G LG + + G + L+ +++ G + + + M
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 209 RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268
+K ++ + +I Y NG+ KA+ + + +S D S++ G+L
Sbjct: 350 ETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----------GF 318
+++ E +++ + +V N+LI + K + KALE+F + E+ G
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465
Query: 319 --------------------YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGA 358
P+ I +S +G K+ ++ G G G
Sbjct: 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418
+ L+D+Y + GR A + + + IL Y G V++ M
Sbjct: 526 LPNALLDLYVRCGRMN-----YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 419 EPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMKAFIRAKK 477
G+ P+ V L+ A +G + L +H M++ I+P+L Y+ ++ RA K
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 478 FHKVPEIYKQMESSGCTPD 496
E Y + TPD
Sbjct: 641 LT---EAYNFINKMPITPD 656
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 460 PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
PD+VTY+TL+ + + K + +++ +M+ G P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 463 VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
VTY+TL+ +A + + E++K+M+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159
P ++Y +LI+ G+ EA +F EM G P + Y+IL+ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 288 VTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318
VT+NSLI +CKAG + +ALELF +M+E+G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 48/208 (23%)
Query: 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209
+NILL G++ G + L M + G+ ++ T+ LL +G + + M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 210 SKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269
K I ++ Y ++D G+ G+L
Sbjct: 617 EK-------------------------YSITPNLKH---------YACVVDLLGRAGKLT 642
Query: 270 EALEVFEKMQQESIRPDIVTWNSL-----IRWHCKAGDVAKALELFTQMQEQGFYPDPKI 324
EA KM I PD W +L I H + G++A G+Y
Sbjct: 643 EAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY----- 694
Query: 325 FITIISCLGELGKWDVIKKNFENMKDRG 352
I + + + GKWD + + + M++ G
Sbjct: 695 -ILLCNLYADAGKWDEVARVRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 6e-06
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 254 IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI 287
YN++ID K G + EALE+F++M++ I PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 462 LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP 495
L TY+ L+ A +A + ++M++SG P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458
V N LI+ + AGK +EAL ++ MK+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 184 TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVY 220
TY L+D + G++++ + NEM+ +G + N + Y
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279
GL D YN++ID + G + EA+E+ ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138
SY+ + C + +A+ L ++++ P+ + +LI AL + +A + EM
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN 181
G P Y+ILL +K +G LL ++ GI N
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461
V N LI+ AG+ +EAL ++ MK+ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
+ T+N+L+ KAGD AL + +M+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRP 285
YN+++ K G+ AL V E+M+ ++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190
YN L+ G+ KKG + +L M+ GI N TY IL+D
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 254 IYNSIIDTFGKYGELVEALEVFEKMQQESI 283
YNS+I + K G+L EALE+F++M+++ +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 463 VTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493
VTY++L+ + +A K + E++K+M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS 112
+YN I CK G ++EA+ L +M+ G P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437
+ Y ++G E+ +K+ M+ GI+PN+ ++LI+
Sbjct: 11 DGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 184 TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217
TY L+D AGR+++ + EM+ +G + +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 84 IQYCCKLGDIDEAMALLAQMQALGFHP 110
+ K GD D A+A+L +M+A G P
Sbjct: 8 LLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.72 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.62 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.6 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.58 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.39 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.31 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.08 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.93 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.55 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.2 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.16 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.11 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.7 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.47 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.36 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.36 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.04 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.97 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.53 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.26 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.23 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.21 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.58 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.35 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.8 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.26 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.19 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.17 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.13 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.75 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.68 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.04 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.92 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.84 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.14 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.22 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.82 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.75 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.58 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.11 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 88.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.29 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.69 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.66 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.35 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.78 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.76 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.68 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.57 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 85.55 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.18 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.64 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 84.29 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.4 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.88 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.85 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.84 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.19 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 82.03 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.56 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.24 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.44 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.16 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=547.07 Aligned_cols=438 Identities=19% Similarity=0.290 Sum_probs=406.8
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--------------------------------CCHhHHHHHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--------------------------------PSSISYASLIEA 121 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------~~~~~~~~li~~ 121 (532)
.++...|..++..+++.|++++|+++|++|.+.|+. ||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345556666666666667777777777777666542 788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 009556 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 201 (532)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE--MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhH
Q 009556 280 QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359 (532)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (532)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 009556 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (532)
Q Consensus 360 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (532)
|+.+|.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCcChHHHHHHHHHhCCCCCC
Q 009556 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----A-------------------KKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~ 496 (532)
.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999876542 1 223579999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 009556 497 RKARQILQSALVVLE 511 (532)
Q Consensus 497 ~~t~~~l~~a~~~~~ 511 (532)
..||..++.++...+
T Consensus 847 ~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 847 MEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999996654333
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-67 Score=540.88 Aligned_cols=436 Identities=18% Similarity=0.301 Sum_probs=421.9
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCcCHHhHHHHHHHHHcCC
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRS--KGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~ 231 (532)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 679999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHH
Q 009556 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----A-------------------GKYKEALS 448 (532)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~ 448 (532)
..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|++++..|.+ + +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999976542 1 12467999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~ 509 (532)
+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|++++..
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 9999999999999999999998888889999999999999999999999999999998843
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-65 Score=535.98 Aligned_cols=428 Identities=21% Similarity=0.288 Sum_probs=413.4
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
++.|.++++.+.+.|+.++..+||.||++|+++|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 5889999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (532)
|.. ++.||..||..++.+|++.|.++.+.+++..+.+.|..++..++++|+++|+++|++++|.++|+.+ .+|.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 986 5999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMKA 471 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~ 471 (532)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 009556 472 FIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 472 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
|.+.|++++|.+++++|. ++||..+|..|+.+|...+..+.++
T Consensus 635 l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999999994 8999999999999997766554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=515.20 Aligned_cols=431 Identities=20% Similarity=0.303 Sum_probs=413.5
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
..++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999999865 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.++.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
..+.+.+++..+.+.|+.+|..+||.||++|+++|++++|.++|++|.+ +|.++||.+|.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
+|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|.+++..++++|+++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 478
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 009556 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMK 470 (532)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~ 470 (532)
..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999975 699999999999999
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhccc
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQR 518 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~~ 518 (532)
+|.+.|++++|.+++++| ++.||..+|..|+.+|...++-+.+..
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999998876 689999999999999998877655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-64 Score=528.54 Aligned_cols=432 Identities=20% Similarity=0.266 Sum_probs=398.5
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
.+||.++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
|+.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
.+.|.+++..+.+.|+.||..+||.||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999974 6999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (532)
|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|..++..+|+.|+++|++.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888753 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCC-------------------------------------------------
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGI------------------------------------------------- 423 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------------------------------------- 423 (532)
.+|+.++.+|++.|+.++|.++|++|.. ++
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 5666666666666666666666666543 22
Q ss_pred ----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHH
Q 009556 424 ----------------EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (532)
Q Consensus 424 ----------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (532)
.||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 4566678888889999999999999999999999999999999999999999999999999999
Q ss_pred HH-hCCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 009556 488 ME-SSGCTPDRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 488 m~-~~g~~p~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
|. +.|+.|+..+|..+++++.+.++-+.+.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99 7899999999999999999988765554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=488.54 Aligned_cols=431 Identities=18% Similarity=0.266 Sum_probs=411.4
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
+..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999997 48999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
++++|.++|++|.+ +|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999964 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999864 6789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 392 GSMFCILANAYAQQGLCEQTVKVLQLMEP-EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999976 599999999999999999999999999998876 57899999999999
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHhhhhhcccc
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLEQRRCKQRL 519 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~~~~~~~~~~~ 519 (532)
+|...|+++.|.++++++.+ +.|+ ..+|..|++.+...++-+.+.++
T Consensus 503 a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999974 6675 56999999999988876655443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-26 Score=250.65 Aligned_cols=428 Identities=13% Similarity=0.060 Sum_probs=336.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 45567777777777788888888887777654 4455667777777777888888888888777654 456677777788
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+.+.|+.++|...++++.+.+. .+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+...+...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888776543 456677778888888888888888888887653 3466778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888887764 3466677888888888888888888888887653 23577788888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHH
Q 009556 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (532)
.. +.+...+..+...+...|++++|...+..+.... |+..++..+..++.+.|+.++|.+.++.+.+.. +.+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 4466777778888888899999999998888765 333667778888889999999999998888764 4567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
..+...|...|+.++|.+.|+++.+.. +++...++.+...+...|+ .+|..+++++.+.. +-+..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 888889999999999999999988765 5678888899999999999 88999999888753 33566778888899999
Q ss_pred CCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 009556 476 KKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 476 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
|++++|.+.++++.+.+.. +..++..+..++...|+...+.
T Consensus 851 g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999986643 7888888999988887765543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-26 Score=248.20 Aligned_cols=402 Identities=12% Similarity=0.071 Sum_probs=356.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++.
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHH
Confidence 45567788899999999999999999998875 5678899999999999999999999999998765 567788889999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998754 3677899999999999999999999999998764 2367788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|...++++.+.. +.+...+..++..+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.++++..
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999998874 44688999999999999999999999999988753 4677888899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHH
Q 009556 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (532)
.+ |+..++..+..++.+.|++++|.+.+..+.+.. +.+...+..+...|...|+.++|...|+++.+.. +.+...+
T Consensus 732 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 807 (899)
T TIGR02917 732 RA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVL 807 (899)
T ss_pred hC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 555777889999999999999999999998875 5678899999999999999999999999999875 4678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
+.+...+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++|+++.+.+.. +..++..+..++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHc
Confidence 999999999999 88999999988763 446677888999999999999999999999987654 888999999999999
Q ss_pred CCcChHHHHHHHHHh
Q 009556 476 KKFHKVPEIYKQMES 490 (532)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (532)
|++++|.+++++|++
T Consensus 885 g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 885 GRKAEARKELDKLLN 899 (899)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=188.31 Aligned_cols=299 Identities=13% Similarity=0.085 Sum_probs=182.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD---RQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 269 (532)
...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 334444444444444444321 1233444444444455555555555554444321111 134455556666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHH
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP----KIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
+|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665431 224555666666666666666666666666554322211 12334555566667777777777
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|...|++++|.+.++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 7766543 33455666677777777777777777777766543222455677778888888888888888887765 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCcChHHHHHHHHHhCCCCCCHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR---AKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666677788888888888888888887764 5777777777776664 457778888888888777777664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-19 Score=193.39 Aligned_cols=400 Identities=14% Similarity=0.083 Sum_probs=268.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHhH------------
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP-KLRFY------------ 150 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~------------ 150 (532)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 445678899999999999988874 4578889999999999999999999999988754211 11112
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHH---
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY--- 227 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--- 227 (532)
......+.+.|++++|...|+++.+... .+...+..+...+...|++++|.+.|++..+.... +...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 1224567789999999999999988643 45667888899999999999999999998876322 344444444333
Q ss_pred ---------------------------------------HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 228 ---------------------------------------RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 228 ---------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...|++++|.+.+++..+... .+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 334555555555555544431 1334444455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHccCCHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK---------IFITIISCLGELGKWD 339 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------~~~~ll~~~~~~~~~~ 339 (532)
++|...++++.+... .+...+..+...+...++.++|+..++.+......++.. .+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 555555555444221 122222233333444555555555554433211111110 1122344556667777
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|..+++. .+.+...+..+...+.+.|++++|++.|+.+.+.. +.+...+..++..|...|++++|.+.++...
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77766651 34556677788899999999999999999998864 3467788889999999999999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHhcCCcChHHHHHHHHHh-CCC
Q 009556 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--P---DLVTYSTLMKAFIRAKKFHKVPEIYKQMES-SGC 493 (532)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~ 493 (532)
+.. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|++... .|+
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 652 335566777888889999999999999998764321 2 224566677888899999999999998863 345
Q ss_pred CC
Q 009556 494 TP 495 (532)
Q Consensus 494 ~p 495 (532)
.|
T Consensus 744 ~~ 745 (1157)
T PRK11447 744 TP 745 (1157)
T ss_pred CC
Confidence 43
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-20 Score=182.56 Aligned_cols=302 Identities=16% Similarity=0.122 Sum_probs=218.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHHhcC
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILLRGFLKKG 161 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 161 (532)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567799999999999999874 45667888888999999999999999998887532221 246778888888999
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHcCCChHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~ 237 (532)
+++.|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999998887532 56678888888899999999999999888876543322 23445666677788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
+.++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+......+++.++.+|...|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8888877654 23455667777778888888888888888776532222345677777777888888888888777764
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCCcccHHHHHHHHHHcCCCCCHH
Q 009556 318 FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---YGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 318 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 345555566777777777777777777777665 3556666666666553 446777777777777665555444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-18 Score=176.65 Aligned_cols=403 Identities=11% Similarity=0.045 Sum_probs=296.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
+......+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|++.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677889999999999999998876 6788899999999999999999999999999875 4567789999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH-------------HHH------------C--C
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE-------------MRS------------K--G 212 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------------m~~------------~--~ 212 (532)
.|++++|+.-|......+...+.. ...++.-+........+...++. ... . .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998887665442211211 11111111110000111111100 000 0 0
Q ss_pred CCcC-HHhHHHHHHH---HHcCCChHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 009556 213 FQLN-SFVYGKVIGL---YRDNGMWKKAVGIVEEIREMG-L-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD 286 (532)
Q Consensus 213 ~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 286 (532)
..+. ...+..+... ....+++++|.+.|+...+.+ . +.....++.+...+...|++++|+..|++..+... .+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc
Confidence 0000 0001111111 123468999999999998764 2 23456788888899999999999999999987532 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 366 (532)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 6678888999999999999999999998763 3457888889999999999999999999999876 4567778889999
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC-----CH-HHHHHHHHHHHhc
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP-----NL-VMLNVLINAFGVA 440 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~li~~~~~~ 440 (532)
+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++........ +. ..++..+..+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999988753 3457788999999999999999999999987653111 11 1122223334457
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999988754 234557889999999999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-18 Score=183.16 Aligned_cols=403 Identities=13% Similarity=0.026 Sum_probs=264.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------C--------------CCHhHH--------
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGF------------------H--------------PSSISY-------- 115 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~-------- 115 (532)
+...+..+...+.+.|++++|++.++++..... . |+....
T Consensus 180 ~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 180 NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 345677888888899999999999998754320 0 000000
Q ss_pred -------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc-C
Q 009556 116 -------------ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR-N 181 (532)
Q Consensus 116 -------------~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~ 181 (532)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+..... +
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 011344567789999999999988765 4577888899999999999999999999988754322 1
Q ss_pred HHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 009556 182 QETYE------------ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS 249 (532)
Q Consensus 182 ~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (532)
...|. .....+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|+++.+...
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p- 416 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP- 416 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 11221 224466788999999999999988743 2566777888899999999999999999887642
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 009556 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR--------PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321 (532)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (532)
.+...+..+...|. .++.++|..+++.+...... -....+..+...+...|++++|++.+++..+.. +-+
T Consensus 417 ~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~ 494 (1157)
T PRK11447 417 GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGS 494 (1157)
T ss_pred CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 23444544444442 23445555444433211000 001122233344445555555555555555432 113
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHH----------------------------------------
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA---------------------------------------- 361 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------------------------------- 361 (532)
...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 3344445555555555555555555554432 11222222
Q ss_pred ----HHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 362 ----ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 362 ----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
.+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.+++..+.. +.+...+..++..+
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 234445556666666666551 23455667778889999999999999999998764 45678889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
...|++++|.+.++...+.. +.+...+..+..++...|++++|.++++++...
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999999887642 234556777888899999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-18 Score=178.87 Aligned_cols=419 Identities=10% Similarity=0.025 Sum_probs=319.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
++....-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.+++++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344566777888999999999999998632 5566679999999999999999999999998764 456777888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+...|++++|...+++..+... .+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 99999999999999999988643 4555 888999999999999999999999987433 55666677888888999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHH
Q 009556 236 AVGIVEEIREMGLSLDR------QIYNSIIDTFG-----KYGEL---VEALEVFEKMQQE-SIRPDIV-TWN----SLIR 295 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~li~ 295 (532)
|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2221 12222233222 22234 7788888888854 2223221 111 1134
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcC
Q 009556 296 WHCKAGDVAKALELFTQMQEQGFY-PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK---IGAIYAILVDIYGQYG 371 (532)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g 371 (532)
.+...|++++|+..|+++.+.+.. |+. ....+...+...|++++|...++.+.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999987532 332 22335778999999999999999987654221 1345666777889999
Q ss_pred CcccHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 372 RFRDPEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
++++|..+++.+..... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987532 123 2345667788899999999999999998764 55678889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
...|++++|++.+++..+.. +.+...+..+...+...|++++|.++++++++ ..|+......+-+.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999998853 23456777788889999999999999999998 678887777666655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-18 Score=174.42 Aligned_cols=364 Identities=10% Similarity=-0.003 Sum_probs=285.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
..++..+.+.|++++|+.+++...... +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 456778889999999999999988874 4456667777788888999999999999999875 55678889999999999
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
|++++|...+++...... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999999988633 45778889999999999999999999988776433 23333333 3478899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC
Q 009556 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK----ALELFTQMQEQ 316 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 316 (532)
+.+.+....++...+..+...+.+.|++++|...+++..+... .+...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9988775444555556667888999999999999999987643 367788889999999999986 89999999875
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH-HHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG-SMF 395 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 395 (532)
. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++.+...+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 3 3366788889999999999999999999999875 4567778889999999999999999999998764 333 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML----NVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
..+..++...|+.++|.+.|++..+....--...| ..+-.++...+..++....+.++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 44567889999999999999998765211111222 333344444455544434455543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-18 Score=172.67 Aligned_cols=392 Identities=9% Similarity=-0.037 Sum_probs=299.0
Q ss_pred HHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhH
Q 009556 88 CKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (532)
.+..+++.-.-.|....+.- -..+..-...++..+.+.|++++|..+++...... +.+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 35566666655565544321 01233345567788889999999999999998765 4455666777788888999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
|...|+++....+ .+...+..+...+.+.|++++|.+.+++..... +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999998654 456788889999999999999999999998863 22567888899999999999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009556 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF 325 (532)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (532)
.... +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..+++..+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6433 33344333 3478899999999999998876443445555666788899999999999999999764 3457778
Q ss_pred HHHHHHHHccCCHHH----HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 326 ITIISCLGELGKWDV----IKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 326 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
..+...+...|++++ |...++.+.+.. +.+...+..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 888899999999986 899999998875 5578899999999999999999999999998865 3356677888999
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV----TYSTLMKAFIRAK 476 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 476 (532)
+...|++++|.+.++.+... .|+. ..+..+..++...|++++|...|++..+....--.. ....+-.++...+
T Consensus 328 l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999875 4444 334445778999999999999999987653221122 2233334444455
Q ss_pred CcChHHHHHHHHH
Q 009556 477 KFHKVPEIYKQME 489 (532)
Q Consensus 477 ~~~~a~~~~~~m~ 489 (532)
..++......++.
T Consensus 406 ~~~~~~~W~~~~~ 418 (656)
T PRK15174 406 LPPERLDWAWEVA 418 (656)
T ss_pred CccchhhHHHHHh
Confidence 5554444555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-19 Score=165.83 Aligned_cols=381 Identities=15% Similarity=0.146 Sum_probs=266.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH-HHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY-NILLR 155 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~-~~li~ 155 (532)
..+|..+.+.+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.... +.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 3567777788888888888888888887763 3356678888888888888888888888777653 554433 33444
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHcCCChH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~ 234 (532)
..-..|++++|...|.+..+... -=...|+.|...+-..|+...|++-|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 45557888888887777766422 22456777888888888888888888877765 333 456777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+|...|.+..... +.....+..+...|...|++|-|+..+++..+.... -...|+.|..++-..|++.+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 8888877776553 234556666777777888888888888887765322 34567888888888888888888888777
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC-HH
Q 009556 315 EQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GS 393 (532)
Q Consensus 315 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~ 393 (532)
... .-.....+.+...+...|.+++|..+|....+.. +.-....+.|...|-+.|++++|...+++..+. .|+ ..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence 642 2234566777778888888888888887777653 233556777777888888888888888877754 343 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-TYSTLMKAF 472 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~ 472 (532)
.|+.+...|-..|+.+.|.+.+.+.+..+ +.-....+.|...|-..|++.+|++-+++..+ ++||.. .|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 67777777888888888888887777643 22345667777888888888888888887776 345532 444444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-19 Score=165.63 Aligned_cols=372 Identities=15% Similarity=0.161 Sum_probs=311.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHH-HHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY-EIL 188 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l 188 (532)
.-..+|..+...+-..|++++|+.+|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 345678889999999999999999999999875 456789999999999999999999999988874 3555543 344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...+...|++++|...|.+..+... -=...|+.|...+-..|+.-.|++.|++.++.+. --...|-.|...|...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcc
Confidence 4455668999999999988877522 1356788888899999999999999999998642 2356788899999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
+.|...+.+.... .| ..+.+..+...|...|+.+.|++.+++..+. .|+ +..|+.+..++-..|++.+|.+.+.
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 9999999887764 33 4566777888899999999999999999875 444 5789999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 347 NMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
...... +......+.|...|...|.+++|..+|....+-.. --...++.|...|-++|++++|...+++..+- .|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 999875 55678889999999999999999999998876532 23456889999999999999999999999874 665
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH
Q 009556 427 L-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 427 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
. ..|+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|.+.|..+|+..+|++-|++..+ ++||..
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 4 68999999999999999999999999874 454 34788999999999999999999999987 778764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-16 Score=161.44 Aligned_cols=376 Identities=11% Similarity=0.004 Sum_probs=273.9
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.|+...|..+...|.+.|++++|++.++...+.+ +.+...|..+..++...|++++|+.-|......+-..+.. ...+
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~ 234 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQA 234 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHH
Confidence 4677789999999999999999999999999875 4567789999999999999999999887765443111211 1111
Q ss_pred HHHHHhcCChhHHHHHHHHHHH---------------------------cCCCcCH-HHHHHHHHH---HHhcCChHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMED---------------------------MGICRNQ-ETYEILLDY---HVNAGRLDDTW 202 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~---------------------------~~~~~~~-~~~~~li~~---~~~~~~~~~a~ 202 (532)
+..+........+...++.-.. ....+.. ..+..+... ....+++++|.
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 1111110001111111110000 0000000 001111100 12246789999
Q ss_pred HHHHHHHHCC-CCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 203 LIINEMRSKG-FQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 203 ~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
+.|+...+.+ ..| ....+..+...+...|++++|+..+++..+.. +.....|..+...+...|++++|...|++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998765 233 45677888888899999999999999999874 23466888889999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHH
Q 009556 281 ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360 (532)
Q Consensus 281 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (532)
... .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 394 ~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 633 367888999999999999999999999998763 3356777788889999999999999999998764 5568889
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGS------MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (532)
+.+...+...|++++|...|+.........+.. .++..+..+...|++++|.+++++..... +.+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 999999999999999999999988764321111 12222233445699999999999987764 33456788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 009556 435 NAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
..+...|++++|.+.|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-15 Score=154.47 Aligned_cols=406 Identities=11% Similarity=0.056 Sum_probs=259.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChh
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (532)
..+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... +........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 357788888888888877663 432 233 77777777788888888888777211 122233333355777778888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHH
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (532)
+|.++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888877644 34556667777778888888888888887765 3444444444444444555655888888877
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHH------------------------------------------------H
Q 009556 245 EMGLSLDRQIYNSIIDTFGKYGELVEALEVF------------------------------------------------E 276 (532)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------------------------------------------------~ 276 (532)
+.. +.+...+..+..++.+.|-...|.++. +
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 764 234555555555555555444444333 3
Q ss_pred HHHhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 277 KMQQE-SIRPDI-VTW----NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 277 ~m~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.+... +..|.. ..| --.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 32221 111211 111 123345666777888888888888777665566777788888888888888888887765
Q ss_pred cC-----CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 009556 351 RG-----HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQT 411 (532)
Q Consensus 351 ~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A 411 (532)
.. .+++......|.-+|...+++++|..+++.+.+... .|+ ...+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 122333346677777888888888888888776321 111 12234456667777888888
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
++.++++.... +-|......+...+...|.+.+|.+.++..... -+-+..+......++...|++++|.++.+.+.+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~- 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS- 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 88888886654 557777778888888888888888888665554 122445666777777778888888888877776
Q ss_pred CCCCCHHHHHHHH
Q 009556 492 GCTPDRKARQILQ 504 (532)
Q Consensus 492 g~~p~~~t~~~l~ 504 (532)
..|+......|-
T Consensus 513 -~~Pe~~~~~~l~ 524 (822)
T PRK14574 513 -RSPEDIPSQELD 524 (822)
T ss_pred -hCCCchhHHHHH
Confidence 556665444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-15 Score=159.13 Aligned_cols=382 Identities=11% Similarity=-0.005 Sum_probs=287.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...+..+...+.+.|++++|+++|++..+.. +.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 44568889999999999999999999988874 5567778889999999999999999999998874 45666 888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH------HhHHHHHHHHHc
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS------FVYGKVIGLYRD 229 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~ 229 (532)
++...|+.++|+..++++.+..+ .+...+..+...+...+..+.|++.++.... .|+. .....+++....
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998654 4566667788888899999999998886654 2221 112222332222
Q ss_pred -----CCCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 009556 230 -----NGMW---KKAVGIVEEIREM-GLSLDRQ-IY----NSIIDTFGKYGELVEALEVFEKMQQESIR-PDIVTWNSLI 294 (532)
Q Consensus 230 -----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li 294 (532)
.+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+.. -..+.
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la 279 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVA 279 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHH
Confidence 2234 6788888888754 1222221 11 11133456779999999999999887532 3322 22257
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-----------CCC---H
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGFYP---DPKIFITIISCLGELGKWDVIKKNFENMKDRGH-----------GKI---G 357 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~ 357 (532)
..|...|++++|+..|+++.+..... .......+..++...|++++|...++.+.+... .|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78999999999999999987643211 134456667788999999999999999887532 122 2
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..... +.+...+..++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence 345677888999999999999999998764 4567888999999999999999999999998863 33466777788899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
...|++++|..+++++++. .|+......+-
T Consensus 438 l~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999999999875 45554443343
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-14 Score=130.05 Aligned_cols=411 Identities=15% Similarity=0.127 Sum_probs=286.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHH-HHHHHHHHHHCC-----------
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLE-ADAIFQEMVCFG----------- 142 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~-A~~~~~~~~~~g----------- 142 (532)
+.+=|.|++. ..+|.+.++.-+|+.|.+.|++.+...-..+++..+-.+ +..- -++.|-.|.+.|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666665 567999999999999999998888887777766544321 1111 112222232221
Q ss_pred --------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 143 --------FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 143 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
.+.+..++..+|.+.|+.-..+.|.+++++-.....+.+..+||.+|.+-.-.. ..++..+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 245678889999999999899999999998888777788889999888654332 26788899988899
Q ss_pred cCHHhHHHHHHHHHcCCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhC----CCCC
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKA----VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQE----SIRP 285 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~~~p 285 (532)
||..|+|.++.+.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++... .++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999987654 5678888899999999999999998888887644 45555554432 2222
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 009556 286 ----DIVTWNSLIRWHCKAGDVAKALELFTQMQEQG----FYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (532)
Q Consensus 286 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (532)
|..-|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.....|+.+...-..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 44556677777888888888887776655321 2333 234566777778888888888889888887777
Q ss_pred CCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHH-----
Q 009556 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG-LC--------E-----QTVKVL----- 415 (532)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~~~~----- 415 (532)
|+..+...++++..-.++++-.-++|..++..|..-+...-.-++..+++.. +. . -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888877765444444444444444433 11 0 011111
Q ss_pred --HHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 416 --QLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI----SPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 416 --~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
.+|... .......+...-.+.+.|+.++|+++|..+.+.+- .|......-+++...+.++...|...++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 123322 33445567777888899999999999998855432 2333344466677778888899999999887
Q ss_pred hCCCC
Q 009556 490 SSGCT 494 (532)
Q Consensus 490 ~~g~~ 494 (532)
..+..
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 65443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-14 Score=149.16 Aligned_cols=405 Identities=13% Similarity=0.057 Sum_probs=256.9
Q ss_pred CCChhhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 74 EFSGNSYNKS-IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 74 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
.|++...... .+.|.+.|++++|++++.++.+.+ +.+......+..+|.. .++ +.+..++.. .+..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3344434444 889999999999999999999986 4556667777778877 466 777777553 2346788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-cCHHHHHH------------------------------HHHHHHhcCChHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEI------------------------------LLDYHVNAGRLDD 200 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~------------------------------li~~~~~~~~~~~ 200 (532)
.+...|.+.|+.++|.++++++...... |...+|.- ++..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999887653221 22222211 1333344444443
Q ss_pred HHHHHH-----------------------------HHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc-----
Q 009556 201 TWLIIN-----------------------------EMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----- 246 (532)
Q Consensus 201 a~~~~~-----------------------------~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 246 (532)
+.++.. .|.+.. +-+......+.-...+.|+.++|.++++.....
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 333211 111110 001111111112223344444444444433221
Q ss_pred ----------------------------------------------------------CC-CC--CHHHHHHHHHHHhcc
Q 009556 247 ----------------------------------------------------------GL-SL--DRQIYNSIIDTFGKY 265 (532)
Q Consensus 247 ----------------------------------------------------------~~-~~--~~~~~~~li~~~~~~ 265 (532)
+. ++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 00 12 44455555555554
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009556 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 266 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666777766665554 244433333344445788888888888876543 344444556666777888888888888
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
+...+.. +.....+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|...+++..... +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 8887764 3333333344444445688888888888887654 456778888888888888888888888887764 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
+...++.+..++...|++++|...+++..+.. +-+...+..+..++...|++++|...+++..+ +.|+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 56677777788888888888888888887753 23566778888888888888888888888876 44554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-13 Score=145.15 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
+++++|+..+.+.... .|+......+...+...|++++|...++.+... +++...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455544444432 234333323333445667777777777765443 233334455566667777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009556 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (532)
+...+.+ +.+...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|...+++..+.. +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7776654 222223333333444557888888888877764 4567777778888888888888888888887753 22
Q ss_pred CHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhhhh
Q 009556 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP-DRKARQILQSALVVLEQRR 514 (532)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~a~~~~~~~~ 514 (532)
+...+..+..++...|++++|++.+++..+ ..| +...+..+..++...++.+
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 455677777778888888888888888876 455 3445666666666655543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-15 Score=130.84 Aligned_cols=340 Identities=16% Similarity=0.236 Sum_probs=158.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
..++..+|.++|+--..++|.++|++......+.+..+||.+|.+-.-.- ..++..+|......||..|+|+++..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 34444444444444444444444444443333444444444443322111 13344444444444444444444444
Q ss_pred HHhcCChHH----HHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH-HHHHHHHHHHc----C----CCCCHHHHHHH
Q 009556 192 HVNAGRLDD----TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK-AVGIVEEIREM----G----LSLDRQIYNSI 258 (532)
Q Consensus 192 ~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~----~~~~~~~~~~l 258 (532)
..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... . .+.+...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 444444332 22334444444444444444444444444433322 22222222211 0 01123333344
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 259 IDTFGKYGELVEALEVFEKMQQE----SIRPD---IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (532)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 331 (532)
+..|.+..+.+-|.++-.-+... -+.|+ ..-|..+....|+....+.-+.+|+.|.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 44444444444444443332211 01111 122333444444444555555555555444444455555555555
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-Cc--------------------ccHHHHHHHHHHcCCCC
Q 009556 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG-RF--------------------RDPEECIAALKLEGLQP 390 (532)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~~~~~~~~~~ 390 (532)
..-.++++-.-+++.++...|..........++..+++.. .. +..+..-.++.+. ..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~ 520 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DW 520 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cC
Confidence 5555555555555555544443333333333333333322 11 0011111223333 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC-C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-I---EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
.....+.++-.+.+.|..++|.++|....+.+ - .|.......+++.-.+.++...|..+++-|...+
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 45567777788889999999999999885443 2 3344444466677777888899999988887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-13 Score=139.97 Aligned_cols=382 Identities=13% Similarity=0.012 Sum_probs=276.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -.........+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3444568999999999999999764 443 344 8888899999999999999998831 112223333346688889
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 196 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999987544 5677778888999999999999999999887 455556655555555567776799999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----------------------------------------------
Q 009556 276 EKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL---------------------------------------------- 309 (532)
Q Consensus 276 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---------------------------------------------- 309 (532)
+++.+.... +...+..+..+..+.|-...|+++
T Consensus 193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999886422 455555555555555544333333
Q ss_pred --HHHHHH-CCCCCCH-HH----HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHH
Q 009556 310 --FTQMQE-QGFYPDP-KI----FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (532)
Q Consensus 310 --~~~m~~-~~~~~~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 381 (532)
++.+.. .+..|.. .. ..-.+-++...++..++++.++.+...+.+....+-..+.++|...+++++|+.+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 223222 1112321 11 122344667888999999999999988876667788899999999999999999999
Q ss_pred HHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC-----------CC--CHH-HHHHHHHHHHhcCC
Q 009556 382 ALKLEGL-----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI-----------EP--NLV-MLNVLINAFGVAGK 442 (532)
Q Consensus 382 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~~-~~~~li~~~~~~g~ 442 (532)
.+..... .++......|..+|...+++++|..+++.+.+... .| |-. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 9866431 22333357889999999999999999999986311 12 222 23456677889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK-ARQILQSALVVL 510 (532)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~a~~~~ 510 (532)
+.+|++.++++.... +-|......+.+.+...|++.+|.+.++.... +.|+.. +......+....
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhh
Confidence 999999999998753 44888899999999999999999999987776 467643 333333333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-14 Score=138.70 Aligned_cols=428 Identities=12% Similarity=0.094 Sum_probs=252.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFY 150 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~ 150 (532)
-|++..|.|.+.|.-.|+++.+..+...+...... .-..+|-.+.+++-..|++++|...|.+..+.. ++. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 46777888999999999999999999988765311 123457888999999999999999999888654 443 444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG----RLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 226 (532)
--|...|.+.|+++.+...|+.+..... -+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 5688899999999999999999887532 45556666666676664 4566666766666553 3367777777766
Q ss_pred HHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCCCH------HHHHHH
Q 009556 227 YRDNGMWKKAVGIVEEI----REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SIRPDI------VTWNSL 293 (532)
Q Consensus 227 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~~~~l 293 (532)
+-...-+.. +..|..+ ...+..+.+...|.+...+...|+++.|...|...... ...+|. .+--.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 666555444 6655544 34455577888888888888899999999988887654 122222 122234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 009556 294 IRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGR 372 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 372 (532)
...+-..++++.|.+.|..+... .|.- ..|..++......+...+|...+......+ ..++..+..+...+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 44555566777777777777654 2222 222222222223345556666666655443 3344455555555555555
Q ss_pred cccHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 009556 373 FRDPEECIAALKLEG-LQPSGSMFCILANAYAQ------------QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (532)
Q Consensus 373 ~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (532)
+.-|.+-|+.+.+.- ..+|..+.-.|...|.+ .+..++|+++|.+..+.. +-|...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 555555444443221 12333333333333221 123445555555554443 3344444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHhh
Q 009556 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS-GCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~a~~~~~~ 512 (532)
.|++.+|..+|.+.++... -+..+|-.+..+|...|++..|+++|+...+. +-.-+......|.+++...++
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 5555555555555554322 12233555555555555555555555554433 222334444555555544443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-13 Score=136.02 Aligned_cols=407 Identities=13% Similarity=0.091 Sum_probs=299.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
+|-.+.++|-..|++++|...|.+..... ++. ..+--+.+.+.+.|+++.+...|+...+.. +.+..+...|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 35568888999999999999999888763 443 345568899999999999999999999865 5566788888888
Q ss_pred HHhcC----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCcCHHhHHHHHHHHH
Q 009556 157 FLKKG----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM----RSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 157 ~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~ 228 (532)
|+..+ ..+.|..++.+..+.- +.|...|..+...+-...-+.. +..|... ...+-.+.+...|.+.....
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 88775 4567777777776653 3577788888887766554443 6666543 45566688899999999999
Q ss_pred cCCChHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREM---GLSLDR------QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV-TWNSLIRWHC 298 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~ 298 (532)
..|++++|...|...... ...++. .+-..+...+-..++.+.|.+.|..+... .|.-+ .|-.+....-
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHH
Confidence 999999999999988765 122222 22333555666677999999999998875 23332 2333332222
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHh--------
Q 009556 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQ-------- 369 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~-------- 369 (532)
..+...+|..+++...... ..++..++.+...+.+...+..|.+-|..+.+.-. .+|+.+.-+|.+.|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 3467889999999887642 33455555566677888888888887776665422 2466666666665543
Q ss_pred ----cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009556 370 ----YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (532)
Q Consensus 370 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (532)
.+..++|+++|.++.+.. +.|...-|.+.-.++..|++.+|..+|.+..+.. .-+..+|-.+.++|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH
Confidence 234567888888888764 4466777888888999999999999999998774 3355678889999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 446 ALSVYHLMKDI-GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 446 A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
|+++|+...+. ....+......|.+++.+.|.+.+|.+.+...+. ..|..
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~ 749 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN 749 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence 99999987643 4455777889999999999999999998888776 45544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-14 Score=126.56 Aligned_cols=432 Identities=13% Similarity=0.087 Sum_probs=288.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCC----ChHhHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYA-SLIEALASVGRTLEADAIFQEMVCFGFNP----KLRFYNILL 154 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~g~~~----~~~~~~~li 154 (532)
...|.+.|..+.-+.+|+..|+-+.+...-||..... .+...+.+...+.+|++.|+..+..-... ...+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3445666777777888999998888777667665433 45567788888999999888777542111 123445555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC------------HHhHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN------------SFVYGK 222 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------------~~~~~~ 222 (532)
-.+.+.|.++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|.+|..-...|| ....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5677889999999999988764 37777666666667778889999999999876533332 222222
Q ss_pred HHH-----HHHcCC--ChHHHHHHHHHHHHcCCCCCHH-------------HHHHH--------HHHHhccCCHHHHHHH
Q 009556 223 VIG-----LYRDNG--MWKKAVGIVEEIREMGLSLDRQ-------------IYNSI--------IDTFGKYGELVEALEV 274 (532)
Q Consensus 223 ll~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l--------i~~~~~~g~~~~A~~~ 274 (532)
.+. -.-+.+ +.++++-.--++..--+.|+-. .+.-| .--|.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 1122221111111111122110 00000 1236788899988888
Q ss_pred HHHHHhCCCCCCHHHHHHHH------------------------------------HHHHHcCCHHHHHHHHHHHHHCCC
Q 009556 275 FEKMQQESIRPDIVTWNSLI------------------------------------RWHCKAGDVAKALELFTQMQEQGF 318 (532)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~ 318 (532)
+.-+.+..-+.-...-+.|- +.-..+|++++|.+.+++.....-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 87776542211111111110 011345788999999998876432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (532)
.-....| .+.-.+-..|++++|+..|-++...- ..+..+...+...|....+...|++++.+.... ++.|+...+.|
T Consensus 522 sc~ealf-niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALF-NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 2111222 22334677899999999887765431 235667777888899999999999998877654 46688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF-IRAKK 477 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~ 477 (532)
...|-+.|+-..|.+..-+--+. ++.|..+...|...|....-+++|+.+|++..- ++|+..-|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999998876554443 577899999999999999999999999998764 689999999887655 56899
Q ss_pred cChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhccccc
Q 009556 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQRLD 520 (532)
Q Consensus 478 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~~~~ 520 (532)
+++|.++|+..... ++-|...+..|++.+..++-...++..|
T Consensus 676 yqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~ 717 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHH
Confidence 99999999998753 7778999999999988877766555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=118.96 Aligned_cols=317 Identities=12% Similarity=0.091 Sum_probs=237.1
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD---RQIYNSIIDTFGKYGELVEA 271 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 271 (532)
+++.++|.++|-+|.+.... +..+-.+|.+.|.+.|..+.|+.+++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46778888888888875221 444556777888888999999998888877521111 23445667778899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHH
Q 009556 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP----KIFITIISCLGELGKWDVIKKNFEN 347 (532)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (532)
+.+|..+.+.+.. -......|+..|-...+|++|++.-+++...+-.+.. ..|.-+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999875322 3456778999999999999999999998877654432 3456666666777889999999999
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH
Q 009556 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (532)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 98776 445556667888899999999999999999988766666778889999999999999999999988763 444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK---KFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
..-..+...-....-.+.|...+.+-... +|+...+..|+....... ...+-..+++.|... -+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge-----------~l 349 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE-----------QL 349 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH-----------HH
Confidence 44455555555566667777666555443 699999999998776543 344555566666542 34
Q ss_pred HHHHHHhhhhhccccchhhhhhhhe
Q 009556 505 SALVVLEQRRCKQRLDIFVFHVLFC 529 (532)
Q Consensus 505 ~a~~~~~~~~~~~~~~~~~~~~~~~ 529 (532)
+.-..+..++|.+..-.+.||+|-|
T Consensus 350 ~~~~~YRC~~CGF~a~~l~W~CPsC 374 (389)
T COG2956 350 RRKPRYRCQNCGFTAHTLYWHCPSC 374 (389)
T ss_pred hhcCCceecccCCcceeeeeeCCCc
Confidence 4445567789999999999999988
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-13 Score=120.62 Aligned_cols=392 Identities=14% Similarity=0.099 Sum_probs=252.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSS------ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
+.+.+.+++.+|++.|+..... .|+. ...+.+...+.+.|+++.|+..|+...+. .|+..+--.|+-++.
T Consensus 245 ni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 4566778888999988877665 3332 23455555667889999999999988876 377666555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCc------------CHHHHHHHH-----HHHHhcC--ChHHHHHHHHHHHHCCCCcCHHh
Q 009556 159 KKGLLGLGSRLLMVMEDMGICR------------NQETYEILL-----DYHVNAG--RLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~------------~~~~~~~li-----~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
--|+-+...+.|.+|......+ +....+.-| .-.-+.+ +.++++-.-.++..--+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 6688888888888887643222 222222111 1111111 11111111111111111111100
Q ss_pred -------------H--------HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-------------------------
Q 009556 220 -------------Y--------GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQ------------------------- 253 (532)
Q Consensus 220 -------------~--------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------- 253 (532)
+ ..-...+.+.|+++.|.++++-+.+..-.....
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 001123566677777766666554432111111
Q ss_pred ------HHHHH-----HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 254 ------IYNSI-----IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 254 ------~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
-||.- .+.....|++++|.+.+++.....-.-....||+ .-.+-..|+.++|++.|-++... +..+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 11111 1112346889999999999887522111222322 22356789999999999987653 33467
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (532)
.+...+...|....+...|++++.+.... ++.|+.+.+.|.+.|-+.|+-..|.+.+-+--+- ++-+..+...|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 77788888999999999999998887654 5778999999999999999999998876543322 355777888888889
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChH
Q 009556 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF-GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 481 (532)
....-+++++.+|++..- +.|+..-|..|+..| .+.|+++.|+++++...+. ++-|......|++.+...|- .++
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~ 712 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDA 712 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhH
Confidence 999999999999998754 589999999888655 5689999999999998764 67788888888888877764 344
Q ss_pred HHHHHHH
Q 009556 482 PEIYKQM 488 (532)
Q Consensus 482 ~~~~~~m 488 (532)
.++-+++
T Consensus 713 key~~kl 719 (840)
T KOG2003|consen 713 KEYADKL 719 (840)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-12 Score=123.16 Aligned_cols=387 Identities=13% Similarity=0.116 Sum_probs=205.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
..+.+...|++++|.+++.+.++.. +.+...|..|...|-..|+.+++...+-.+--.. +-|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 3344445588888888888887764 5567778888888888888888877665554433 4566778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH----HHHHHHHcCCChHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG----KVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~ 238 (532)
++.|.-.|.+..+..+ ++...+---+..|-+.|+...|.+.|.++.....+.|..-+. .++..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877644 444444455667777888888888888887764432332222 23344555666677777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 009556 239 IVEEIREM-GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE-- 315 (532)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 315 (532)
.++..... +-..+...++.++..|.+...++.|......+......+|..-|.+--. ++ .-+.-...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-----~~~~~~~~~~ 371 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-----EEPNALCEVG 371 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-----ccccccccCC
Confidence 76666552 1223445566677777777777777777666665444444433311000 00 00000000
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC--CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG--HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
.+..++... ..+.-++.+....+....+...+.... ..-+...|.-+.++|...|++.+|..+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 011111111 111122223333333333333333333 22233444555555555555555555555555443333444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD--------IGISPDLVTY 465 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~ 465 (532)
.|-.+...|...|.+++|.+.++...... +-+...-..|...+-+.|+.++|.+.++.+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 55555555555555555555555554431 22223333444445555555555555554321 1233333333
Q ss_pred HHHHHHHHhcCCcChHHHH
Q 009556 466 STLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~ 484 (532)
......+.+.|+.++-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 3444444555554443333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-11 Score=110.90 Aligned_cols=418 Identities=11% Similarity=0.074 Sum_probs=225.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChHhHHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV----CFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~~~ 158 (532)
|.-+|++..-|+.|..+++...+. ++.+...|.+-...=-.+|+.+....+.++.. ..|+..+...|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 445666777788888888887765 56777778777777677788777777766543 4566666666666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICR--NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+.|..-.+..+.......|+.- -..||+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666665555432 2235666666666666666666666655543 222444444444444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..+++++...- +-....|-.....+-..|+...|..++....+.... +...|-.-+.....+.++++|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 55555555442 223344444444455556666666655555544222 4445555555555555566666555555442
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFC 396 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (532)
.|+...|..-+..---++..++|.+++++.++.- +.-...|-.+.+.+.+.++.+.|.+.|..-.+. .+-....|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 3444444444444444455555555555554432 223344444555555555555554444433222 122233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI-------------------- 456 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------- 456 (532)
.+...--+.|.+-.|..+++...-.+ +-|...|-..|++=.+.|..+.|..+..+..+.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 44444444455555555555444332 334444555555555555555544443333211
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHh
Q 009556 457 ---------GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (532)
Q Consensus 457 ---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~~~ 511 (532)
...-|+...-.+...+....++++|.+.|++..+ +.|| ..+|..+.+-....|
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence 0223444555555666666677777777777765 3343 345666665555555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-11 Score=118.92 Aligned_cols=306 Identities=13% Similarity=0.130 Sum_probs=203.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|-+|...|-+.|+.+++...+-.+-..+ +.|...|..+.....+.|.+++|.-.|.+.++.. +++...+---.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 456789999999999999999998876665554 6677899999999999999999999999999876 56666666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHH----HHHHHHHHhcCChHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHc
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETY----EILLDYHVNAGRLDDTWLIINEMRSK-GFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~ 229 (532)
..|-+.|+...|.+-|.++.....+.+..-. -..+..+...++-+.|++.++..... +-..+...++.++..+.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 8899999999999999999986542232222 23456677788889999998887763 233456678888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHH--------------------------HHHHHHhccCCHHHHHHHHHHHHhCC-
Q 009556 230 NGMWKKAVGIVEEIREMGLSLDRQIYN--------------------------SIIDTFGKYGELVEALEVFEKMQQES- 282 (532)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------~li~~~~~~g~~~~A~~~~~~m~~~~- 282 (532)
...++.+............++|..-|. .++-++.+....+....+.....+..
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 999999999888887766666654431 11112222222222333333333332
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHH
Q 009556 283 -IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361 (532)
Q Consensus 283 -~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (532)
+.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...|..+.|.+.++.++... |.+...--
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence 2223344555555666666666666666666544333345555556666666666666666666655543 33344444
Q ss_pred HHHHHHHhcCCcccHHHHHHHH
Q 009556 362 ILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 362 ~li~~~~~~g~~~~a~~~~~~~ 383 (532)
.|...+.+.|+.++|.+.+..+
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcc
Confidence 5555555666666666665553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-11 Score=110.12 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=273.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC--HHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--QETYE 186 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~ 186 (532)
..|...+-.....+-+.|....|...|...... -+..|.+.+....-.-+.+.+..+. . +.+.| ...--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHHHHH
Confidence 445555555555666778888888888777642 2334444443333333333332221 1 12111 11112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhc
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGK 264 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 264 (532)
.+..++-.....+++.+-.......|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 34456666678888888888888888887777777777777889999999999999998732 1256677766533222
Q ss_pred cCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 009556 265 YGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKK 343 (532)
Q Consensus 265 ~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 343 (532)
+.++. -|..+++- ... -+.|...+.+-|.-.++.++|...|++..+.+. -....++.+..-|....+...|.+
T Consensus 312 ~skLs~LA~~v~~i---dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI---DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHHh---ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence 11111 12222211 112 345677788888899999999999999987642 244667777888999999999999
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC
Q 009556 344 NFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI 423 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 423 (532)
.++.+++.+ |.|-..|-.|.++|.-.+...-|+-.|++..... +.|...|.+|...|.+.++.++|.+-|......|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999886 6788999999999999999999999999998764 4588999999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
..+...+..|...|-+.++.++|...|++..+. |...+ ...-.-|..-+.+.+++++|.........- .+..
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ 540 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETEC 540 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchH
Confidence 456788999999999999999999999887652 33322 222233666778899999999887777653 7777
Q ss_pred HHHHHHHHHHHHHh
Q 009556 498 KARQILQSALVVLE 511 (532)
Q Consensus 498 ~t~~~l~~a~~~~~ 511 (532)
.--..|++.+.+..
T Consensus 541 eeak~LlReir~~~ 554 (559)
T KOG1155|consen 541 EEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888776653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-12 Score=124.56 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=143.5
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHcCCChHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG--KVIGLYRDNGMWKKAV 237 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 237 (532)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 56777776666655443111 1222333333445666666666666666543 23322221 2234555556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 6665555543 224445555555555555555555555555554332111 111000
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHH
Q 009556 318 FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCI 397 (532)
Q Consensus 318 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (532)
...|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+... .
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~ 299 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--V 299 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--H
Confidence 001111222222222333334444433222 1334555555666666666666666666655553 233321 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (532)
++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 2233334466666666666665542 334445556666666666666666666666653 4666666666666666666
Q ss_pred cChHHHHHHHHH
Q 009556 478 FHKVPEIYKQME 489 (532)
Q Consensus 478 ~~~a~~~~~~m~ 489 (532)
.++|.+++++-.
T Consensus 377 ~~~A~~~~~~~l 388 (398)
T PRK10747 377 PEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-12 Score=125.08 Aligned_cols=294 Identities=11% Similarity=-0.013 Sum_probs=143.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566666666665555432 22 22333334455555666666666665544321111112222344445555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN-SLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 5555555543 223444445555555555555555555555544322 111111 000000
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH---GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
......+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+........
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 000111111111222222222111 1245555566666666666666666666665543221111
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 394 M-FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL--VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 394 ~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
. ...........++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+..
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 1111112223356666677776665541 2233 4556777777777888888877775433334577777777777
Q ss_pred HHHhcCCcChHHHHHHHHH
Q 009556 471 AFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~ 489 (532)
.+.+.|+.++|.++|++..
T Consensus 379 ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777888777777777653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-10 Score=105.77 Aligned_cols=403 Identities=11% Similarity=0.094 Sum_probs=231.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILL 154 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~-~~~~~li 154 (532)
+...|-...+.=..++++..|..+|++...-. ..+...|...+..=.++.+...|..++++.... -|.+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 33444444444455788888999999988765 566777888888888888888888888888754 2333 3444555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.+=-..|++..|.++|++..+ ..|+...|++.|+.=.+.+..+.|..+|++..-. .|+..+|....+.--+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 555567888888888887776 4588888888888888888888888888887654 577878777777777788888
Q ss_pred HHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC------------------------------
Q 009556 235 KAVGIVEEIREM-G-LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES------------------------------ 282 (532)
Q Consensus 235 ~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------ 282 (532)
.+..+|+...+. | -..+...+++....=.++..++.|.-+|.-..+.-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 888877776653 1 01112233333333334445555555554443321
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCCHH
Q 009556 283 -------------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-------KIFITIISCL---GELGKWD 339 (532)
Q Consensus 283 -------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~~~~~ 339 (532)
-+-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+=-++ ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1123344444444444555555555555555543 23311 1111111111 1234555
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHH----HhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIY----GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVL 415 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 415 (532)
.+.++++..++. +|....++.-+--+| .++.++..|.+++...+ |..|-..+|...|..-.+.++++.+.+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555542 233333333332222 23445555555555444 33455555555555555666666666666
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 416 QLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 416 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+...+.+ +-|..+|......=...|+.+.|..+|+..++... ......|.+.|.--...|.++.|..+++++.+
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 6666554 33555565555555556666666666666554311 11223444455544556666666666666654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-12 Score=122.88 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH--HHHccCCHHHHHHHHHHHHhcCCCCCH--hHH
Q 009556 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF-ITIIS--CLGELGKWDVIKKNFENMKDRGHGKIG--AIY 360 (532)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 360 (532)
+...+..+...+...|+.++|.+++++..+.. ||.... ..++. .....++.+.+.+.++...+.. +.++ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 44455555555555555555555555555432 222110 00111 1122344555555555554432 2333 444
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
.++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555666666666666666664333333455555556666666666666666666553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-12 Score=120.51 Aligned_cols=279 Identities=9% Similarity=0.108 Sum_probs=135.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhcCChHHH
Q 009556 125 VGRTLEADAIFQEMVCFGFNPKLRF-YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE--TYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 125 ~~~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a 201 (532)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+.. |+.. ........+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 477777776666554432 12222 2222334466677777777777776532 3332 222335566677777777
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHH
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR-------QIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~ 274 (532)
.+.++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777665422 5566666677777777777777777777766543221 1222222222233334444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 009556 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (532)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (532)
++.+.+. .+.+......+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 4444322 1224444555555555555555555555555542 2233111 1122223344444444444444332 2
Q ss_pred CCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (532)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 416 (532)
.|......+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.++++
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333444444444444444444444444332 2333333344444444444444444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=133.49 Aligned_cols=261 Identities=15% Similarity=0.142 Sum_probs=100.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
.+...+.+.|++++|++++++..... .+.|...|..+.......++++.|++.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778899999999986654433 23445555666666777888999999999888765 3356667777777 688
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHcCCChHHHHHH
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (532)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765532 556667778888888888888888888876543 344667777778888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
+++..+.. +.|....+.++..+...|+.+++.++++...+.. +.|...|..+..++...|+.++|+.++++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888774 2357778888888888888888777777766542 2344567778888888888888888888877642 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 320 PDPKIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
.|+.+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 467777778888888888888887776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-09 Score=104.11 Aligned_cols=406 Identities=12% Similarity=0.113 Sum_probs=325.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQ----MQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLR 148 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~ 148 (532)
.+...|-+-...=-++|+.+...++.++ +...|+..+...|..=...|-..|..--+..+....+..|+.. -..
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 3556676555555678999988888776 5566888999999999999999999999999999888877654 347
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
||+.-...|.+.+.++-|..+|....+-- +.+...|......=-..|..++...+|++....-. -....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHH
Confidence 88999999999999999999999988753 25667888888877888999999999999988733 25566666677778
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (532)
..|+...|..++..+.+.... +..+|-+.+........++.|..+|.+.... .|+...|.--+...--.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999999988644 7888999999999999999999999988764 5677777777777777889999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC
Q 009556 309 LFTQMQEQGFYPD-PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (532)
Q Consensus 309 ~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 387 (532)
++++..+. -|+ ...|..+.+.+-+.++.+.|...|..=.+. ++..+..|-.|.+.-.+.|.+-.|..+++...-++
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99998875 344 456777777888888999988888765544 35667788888888889999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC----C-------------------------CCCCHHHHHHHHHHHH
Q 009556 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE----G-------------------------IEPNLVMLNVLINAFG 438 (532)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-------------------------~~p~~~~~~~li~~~~ 438 (532)
+.+...|-..|+.-.+.|+.+.|..+..+..+. | ...|....-.+...+-
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 457788999999999999999888776654432 1 1234444556667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
...+++.|.+.|.+..+.+. .+-.+|..+...+.+.|.-++-.++++....
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 78899999999999987642 2455888899999999998888999998876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=133.77 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 009556 293 LIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~ 312 (532)
++..+.+.++++++.++++.
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-09 Score=98.90 Aligned_cols=383 Identities=10% Similarity=0.088 Sum_probs=267.5
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..+...|-.-+..=.++..+..|..++++.... -|-+ ..|-..+..=-..|+...|.++|++-.+. .|+...|++
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHH
Confidence 445667777777777888888888888887765 2332 34555555555668888888888877764 588888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC-CcCHHhHHHHHHHHHcC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK-GF-QLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~~~~~ll~~~~~~ 230 (532)
.|+.=.+...++.|..++++..- +.|++.+|.-....=.+.|....|..+|....+. |- ..+...+.+....-..+
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q 257 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ 257 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888775 3478888877777777788877777777776543 10 00112222222222233
Q ss_pred CChHHHHHHHHHHH--------------------------------------------HcCCCCCHHHHHHHHHHHhccC
Q 009556 231 GMWKKAVGIVEEIR--------------------------------------------EMGLSLDRQIYNSIIDTFGKYG 266 (532)
Q Consensus 231 ~~~~~a~~~~~~~~--------------------------------------------~~~~~~~~~~~~~li~~~~~~g 266 (532)
..++.|.-+|+-.+ +.+ +.|-.+|-..++.-...|
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcC
Confidence 33444443333222 211 335556777777777889
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHH--------HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 009556 267 ELVEALEVFEKMQQESIRPDI--VTWNSLIR--------WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCL---- 332 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~--~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---- 332 (532)
+.+...++|++.... ++|-. ..|...|- .-....+++.+.++++..++. ++-...||..+=-.|
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 999999999998875 44421 22322222 123467899999999998873 444566766554444
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009556 333 GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412 (532)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (532)
.++.++..|.+++...+. ..|-..++...|+.-.+.+.++.+..+++...+-+ +-+..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 467789999999988764 46788899999999999999999999999999875 446778888888888899999999
Q ss_pred HHHHHhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 413 KVLQLMEPEG-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 413 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
.+|....+.. +......|.+.|+-=...|.++.|..+++++.+.. +...+|-+...
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 9999988642 22334567777777788999999999999998763 33445665544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-10 Score=106.27 Aligned_cols=404 Identities=13% Similarity=0.069 Sum_probs=259.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 156 (532)
.+-+.-+-|.++|++++|++.|.+.++. .|| +.-|.....+|...|++++..+.-...++.+ |+ +-.+.--.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 3555667788999999999999999987 577 7888899999999999999999888888754 43 3455555667
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH--------HHHHH-C--CCCcCHHhHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLII--------NEMRS-K--GFQLNSFVYGKVIG 225 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--------~~m~~-~--~~~~~~~~~~~ll~ 225 (532)
+-..|++++|+.=. |-..++.++-...-.-.+.+++ ++-.+ . .+.|......+...
T Consensus 193 ~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred HHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 77778877775321 1112222221111111111111 11111 1 12233322222222
Q ss_pred HHHc----------------------------CCChHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHhcc
Q 009556 226 LYRD----------------------------NGMWKKAVGIVEEIREM---GLSLD---------RQIYNSIIDTFGKY 265 (532)
Q Consensus 226 ~~~~----------------------------~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~ 265 (532)
.+.. ...+..|.+.+.+-... ....+ ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 2211 01122222222221110 00111 11111112223457
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009556 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 266 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
|+.-.|..-|+........++. .|--+...|....+.++.+..|.+....+ +-++.+|..-.+...-++++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 8888899999888876444332 26677788899999999999999988764 336667777777777788999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
++.++.. +.+...|-.+.-+.-+.+++++++..|++.+++ ++..+..|+.....+..+++++.|.+.|+..++. .|
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 9988776 445666666666677888999999999999876 3456677999999999999999999999988764 23
Q ss_pred C-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 426 N-------LVML--NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 426 ~-------~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
+ ...+ -.++..- -.+++..|.+++.+..+.+.+ ....|.+|...-.+.|+.++|+++|++....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l----- 566 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL----- 566 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 2 2211 1222221 338899999999999886433 3457889999999999999999999987642
Q ss_pred HHHHHHHHHHHHHHhh
Q 009556 497 RKARQILQSALVVLEQ 512 (532)
Q Consensus 497 ~~t~~~l~~a~~~~~~ 512 (532)
..|..-+++++.-.+.
T Consensus 567 Art~~E~~~a~s~aeA 582 (606)
T KOG0547|consen 567 ARTESEMVHAYSLAEA 582 (606)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 2344445555544433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=104.58 Aligned_cols=292 Identities=13% Similarity=0.118 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 126 GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
|++.+|.++..+-.+.+ +.....|..-..+--+.|+.+.+-+.+.+.-+....++...+-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55555555555544443 12223333344444445555555555555554433344444445555555555555555555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 009556 206 NEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP 285 (532)
Q Consensus 206 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 285 (532)
+++.+.+.. +........++|.+.|++.....++..+.+.+.-.+... .+ -
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~-----------l 227 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR-----------L 227 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH-----------H
Confidence 555444322 344444445555555555555555555555443322110 00 0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
...+|+.+++-....+..+.-...|+..... .+-++..-.+++.-+.+.|+.++|.++..+..+++..+. ...+ -
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-I 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-H
Confidence 1123444444444444444444444443322 233344444555555555566666555555555544333 1111 1
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (532)
...+-++.+.-++..+.-.+. .+.++..+..|...|.+++.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 122334444444444433322 1223355666677777777777777777765554 5677777777777777777777
Q ss_pred HHHHHHHHHH
Q 009556 446 ALSVYHLMKD 455 (532)
Q Consensus 446 A~~~~~~m~~ 455 (532)
|.++.++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 7777666553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-11 Score=119.69 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh
Q 009556 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF 149 (532)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~ 149 (532)
..|..|+.++|.++|..||..|+.+.|- +|..|.-+..+.+...++.++.+....++.+.+. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4578899999999999999999999998 9998888877788888999999988888887776 578889
Q ss_pred HHHHHHHHHhcCChhH
Q 009556 150 YNILLRGFLKKGLLGL 165 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~ 165 (532)
|..|..+|.+.||+..
T Consensus 86 yt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHhccchHH
Confidence 9999999999998654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-10 Score=103.36 Aligned_cols=292 Identities=16% Similarity=0.144 Sum_probs=181.0
Q ss_pred HHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 82 KSIQYCC--KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 82 ~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
.+..+.. -.|+|.+|.++..+-.+.+ ......|..-+.+--..|+.+.+-.++.+..+.--.++...+-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 3599999999999987775 233445666667777899999999999999987446777888888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-------hHHHHHHHHHcCCC
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-------VYGKVIGLYRDNGM 232 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~ 232 (532)
.|+.+.|..-.+++.+.+. .+.........+|.+.|++.+...++..|.+.|.--|+. +|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998765 677788999999999999999999999999998765543 34444444444444
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
.+.-...++..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+. ...-.+.+-++.+.-++..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 44444444444322 1223444444555555555555555555555554443331 111223334444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
-... .+-++..+.++...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++.
T Consensus 320 ~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 320 WLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3322 1222344445555555555555555555544433 244445555555555555555555554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-10 Score=100.39 Aligned_cols=268 Identities=15% Similarity=0.089 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------HhHHHHHHHHHhcCCh
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL------RFYNILLRGFLKKGLL 163 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~ 163 (532)
+++.++|+++|-+|.+.. +.+..+--+|.+.+.+.|..++|+.+++.+.++ ||. ...-.|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467788888888887653 334445566777777888888888888887763 432 2234455666677777
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH----hHHHHHHHHHcCCChHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRDNGMWKKAVGI 239 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~ 239 (532)
+.|..+|..+.+.+. .-......|+..|-+..++++|+++-+++.+.+..+... -|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 777777777765432 334456667777777777777777777776665443221 233333344445566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
+.+..+.+. ..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 666665531 1223333444555666666666666666665533323334455566666666666666666666554322
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 320 PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
++. -..+-.......-.+.|...+.+-... .|+...+..+++.-
T Consensus 282 ~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 282 ADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred ccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 222 222222222333344444444333333 34555555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-10 Score=100.40 Aligned_cols=350 Identities=13% Similarity=0.124 Sum_probs=232.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH--HHHHHHHHhcCChh
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY--NILLRGFLKKGLLG 164 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~ 164 (532)
+.+.|..+.|++.|......- +-.-..|..|...+. +.+ ....... |.+.|.... --+..++-.....+
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e----~~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIE----ILSILVV-GLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHH----HHHHHHh-cCcccchHHHHHHHHHHHHHHHHHH
Confidence 445677777777777766431 223334443333322 222 2222221 222221111 12345566666788
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
++.+-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++- .+..+-+.+ .+.+
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~skLs--~LA~ 320 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSKLS--YLAQ 320 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHHHH--HHHH
Confidence 88888888888887444444444455566778899999999999887321 15667776663 333222211 1111
Q ss_pred -HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 009556 243 -IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321 (532)
Q Consensus 243 -~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (532)
..+.+ .--+.|+..+.+-|.-.++.++|...|++..+.+.. ....|+.|.+-|....+...|.+-++...+-. +.|
T Consensus 321 ~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 321 NVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 11110 112345666777788888999999999998876433 55678888899999999999999999988764 447
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
-..|-.+.++|.-.+...-|+-.|++..... |.|...|.+|.++|.+.++.++|+..|......+ ..+...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 7888889999999999999999999988765 6788999999999999999999999999988765 3366778899999
Q ss_pred HHhcCCHHHHHHHHHHhcc----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 402 YAQQGLCEQTVKVLQLMEP----EGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
|-+.++.++|...++...+ .|...+ ...---|..-+.+.+++++|........
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999999988876654 232222 1222235556677788888776554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=117.33 Aligned_cols=286 Identities=12% Similarity=0.088 Sum_probs=214.2
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 009556 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
+..+|..+|..+... +.-+..+...+.++|...+++++|.++|+.+.+... .-+..+|...+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467888889885554 333456777888999999999999999999887531 22566777776544322 12222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 275 F-EKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 275 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
+ +.+.+. -+-.+.+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 222222 1236789999999999999999999999998874 44 67888888878888889999999999887653
Q ss_pred CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHH
Q 009556 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNV 432 (532)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 432 (532)
+-+-..|-.+...|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|+++++++.... +-|...--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2233444557788999999999999999998765 3456677778888899999999999999987664 335554445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCC
Q 009556 433 LINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP 495 (532)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 495 (532)
.+..+...+++++|+..++++.+. .|+ ...|..+...|.+.|+.+.|+.-|--+.+..-++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 677778889999999999999885 444 5567788899999999999999988888744333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=116.06 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCChHHHHHH
Q 009556 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI--CRNQETYEILLDYHVNAGRLDDTWLI 204 (532)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 204 (532)
+..+|...|..+...- .....+...+.++|...+++++|.++|+.+.+... ..+...|.+.+..+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3445555555533321 22234445555555555555555555555554321 123445555554443211 1111
Q ss_pred H-HHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 009556 205 I-NEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (532)
Q Consensus 205 ~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 283 (532)
+ +.+.+. -+-.+.+|-.+.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 1 111111 11244555555555555666666666665555542 114555555555555555566666665555432
Q ss_pred CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHH
Q 009556 284 RPDIVTWNS---LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360 (532)
Q Consensus 284 ~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (532)
|...||+ +...|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.|+|+++++++...+. .++..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence 3333332 3444555666666666665555432 12344444555555556666666666666555442 222222
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
-..+..+...+++++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 23334444556666666666666553 1223444555556666666666666665555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-09 Score=95.58 Aligned_cols=397 Identities=12% Similarity=0.062 Sum_probs=211.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
.+.|++++|+..|..+.... .++...+-.+.....-.|.+.+|..+-.... .++-.-..+...-.+.|+-++-.
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHH
Confidence 34445555554444444332 2333334444444444444444444433321 11222223333333444444444
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHHcCCChHHHHHHHHHHHHc
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
.+.+.+.+ ....-.+|.......-.+++|++++.+.... .|+-...+.-+ -+|.+..-++-+.++++-..+.
T Consensus 142 ~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 33333332 1122234444444445678888888888765 23334444333 3566777788888887776665
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh--------------CC------------CCC-----CHHHHHHHHH
Q 009556 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ--------------ES------------IRP-----DIVTWNSLIR 295 (532)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~~------------~~p-----~~~~~~~li~ 295 (532)
++.+....|.......+.-.-..|.+-...+.+ .+ +-| -+..--.++-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 233444445444333222111111111111111 10 001 0112223455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCCHhH-HHHHHHHHHh
Q 009556 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC-----LGELGKWDVIKKNFENMKDRGHGKIGAI-YAILVDIYGQ 369 (532)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~ 369 (532)
-|.+.+++.+|..+.+++.- ..|-......+..+ .........|.+.|...-+.+..-|... -..+..++.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 67788899999888877642 23333333333222 1222235566677766655554444322 2345555556
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGKYKEALS 448 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~ 448 (532)
..++++.+..+..+..--...|...+ .+..+++..|++.+|+++|-......++ |..+| ..|.++|.++++++-|++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence 66788888888888776555455444 4778899999999999999888765544 44455 456688999999999998
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 449 VYHLMKDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
++-++.. +.+.. ....+...|.+.+.+--|.+.|+.+.. +.|+...|+-=-.||
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 7655432 22333 334456778888888888888888876 445554444333333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-09 Score=100.27 Aligned_cols=289 Identities=12% Similarity=0.048 Sum_probs=224.7
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (532)
...+......-.+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=..+++.- +....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 44566677777788888999999999999988763 3455556666668888888888777777777763 456788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 337 (532)
+.--|.-.|+..+|.+.|.+...-... =...|-.....|+-.|..+.|+..+...-+. ++-...-+.-+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 998898899999999999987654222 2356888899999999999999988876653 11112222334456788899
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 338 WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE------GLQPSGSMFCILANAYAQQGLCEQT 411 (532)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A 411 (532)
.+.|.+.|.+..... |.|+.+.+.+.-.....+.+.+|..+|+..... ....+..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999988765 678888888888888889999999999887521 1112566788999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
+..+++..... +-|..++.++.-.|...|+++.|.+.|.+..- +.||-.+-..++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999988764 66888999999999999999999999998875 57888777777765543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-10 Score=110.85 Aligned_cols=273 Identities=18% Similarity=0.143 Sum_probs=158.4
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
.++-.+...|+.||.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34567788899999999999999999999999888 9999988777788899999999999999887776
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHH-HcCCCCCHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR-EMGLSLDRQIYN 256 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 256 (532)
.|...||..|..+|...||... |+...+ -...+...+...|.-..-..++..+. ..+..||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 3888899999999999998765 222211 11112223333333333333332211 111222222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESI-RPDIVTWNSLIRWHCKAG-DVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
..+....-.|-++.+++++..+.-... .|..+ .++-+.... .+++-........+ .|++.+|..++..-..
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 122233334445555555544432211 01111 122222221 22222222222222 3566666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009556 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (532)
.|+.+.|..++..|.+.|.+.+..-+-.|+-+ .++...++.+++-|...|+.|+..|+...+-.+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666666666666666666555544444333 55555666666666666666666666555555555433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-10 Score=100.52 Aligned_cols=199 Identities=13% Similarity=0.061 Sum_probs=128.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
....+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667778888888999999999999887764 4456777888888888888888888888888765 345566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.+...|++++|.+.+++....... .....+..+...+...|++++|...+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 788888888888888877654211 22334555556666666666666666666554211 3344555555555556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555544 1223444444445555555555555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-10 Score=113.28 Aligned_cols=268 Identities=9% Similarity=-0.032 Sum_probs=183.7
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 009556 109 HPSSISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK---------KGLLGLGSRLLMVME 174 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 174 (532)
..+...|...+++... .+.+++|.++|++..+.. +.+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 356889999999998764 3345566666655442 345789999999998
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
+... .+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.+.. +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8654 46778888888889999999999999999887432 5667888888999999999999999999887533 2333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKI-FITIISCLG 333 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~ 333 (532)
+..++..+...|++++|...+++..+...+-+...+..+...+...|++++|.+.+.++... .|+... ...+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33444456668899999999998876532224555677788888999999999999887654 344333 344445566
Q ss_pred ccCCHHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC
Q 009556 334 ELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (532)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 387 (532)
..| +.+...++.+.+... .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 477776666654321 1111122 34445556666666655 7776654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-07 Score=88.10 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChHhHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG------FNPKLRFYNI 152 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~~~~~~~~~ 152 (532)
.|.-.+...-..+-++-++.++++..+ .++..-+-.|..+++.+++++|.+.+....... .+.+...|.-
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 455566666666666667777766663 344445666677777777777777666655221 1233444444
Q ss_pred HHHHHHhcCChhHH---HHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 153 LLRGFLKKGLLGLG---SRLLMVMEDMGICRNQ--ETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 153 li~~~~~~g~~~~A---~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+-...++.-+.-.. ..+++.+... -+|. ..|.+|.+.|.+.|.+++|.++|++..+.
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44444443332221 2222222221 1332 35778888888888888888888776654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=83.80 Aligned_cols=50 Identities=34% Similarity=0.562 Sum_probs=41.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 124 (532)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=98.32 Aligned_cols=200 Identities=13% Similarity=0.047 Sum_probs=132.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4566777788888888888888888887654 34566777777888888888888888887776543 345567777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
+...|++++|.+.+++.......+ ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 778888888888888776542222 23445555666667777777777777666553 2234556666666666667777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 76666666554 223445555555666666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-08 Score=92.57 Aligned_cols=415 Identities=12% Similarity=0.029 Sum_probs=271.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH----HHHCC---------CCCCh
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQE----MVCFG---------FNPKL 147 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----~~~~g---------~~~~~ 147 (532)
--+.+.+.-.|++++|..+...-.-. ..|..+.......+.+..++++|..++.. ..... +.+|.
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~ 130 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNS 130 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCc
Confidence 34777778888888888877664333 45777777777888888888888888872 21100 00111
Q ss_pred Hh----HHHHH-------HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhc-----------------C
Q 009556 148 RF----YNILL-------RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVNA-----------------G 196 (532)
Q Consensus 148 ~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~-----------------~ 196 (532)
.- -+.-. ..|......++|...|.+.... |...+..+ +....-. +
T Consensus 131 ~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ 206 (611)
T KOG1173|consen 131 AGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTK 206 (611)
T ss_pred ccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhh
Confidence 10 01111 2233344566777777776653 33333322 2211110 0
Q ss_pred C-hHHHHHHHHH----HHH------------CCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 197 R-LDDTWLIINE----MRS------------KGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 197 ~-~~~a~~~~~~----m~~------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
. .+.-..+|+- +.. .+..-+......-..-+....++.+..++.+.+.+.. ++....+..-|
T Consensus 207 ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~i 285 (611)
T KOG1173|consen 207 EDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHI 285 (611)
T ss_pred hHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHH
Confidence 0 1111111211 000 0122233334444455667788888888888887764 45555666667
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..+...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.+.|.+....... =...|..+..+++-.+..|
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHH
Confidence 78888888777777777777652 335678888888888889999999999887643211 1345667778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|...+..+.+.-... ..-+-.+.--|.+.+..+-|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+...
T Consensus 364 QAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 8888887776542111 1112234445677888899999998887653 4467777777777777889999999998765
Q ss_pred cC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 420 PE--GIE----PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 420 ~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
.. .+. .-..+++.|..+|.+.+.+++|+..+++..... +.|..++.++.-.|...|+++.|.+.|.+... +
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--L 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--c
Confidence 21 011 133467889999999999999999999998763 45888999999999999999999999999885 8
Q ss_pred CCCHHHHHHHHHHHHH
Q 009556 494 TPDRKARQILQSALVV 509 (532)
Q Consensus 494 ~p~~~t~~~l~~a~~~ 509 (532)
.||..+.+.+++.++.
T Consensus 519 ~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIE 534 (611)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999888877775554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=82.43 Aligned_cols=50 Identities=40% Similarity=0.731 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777776653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-07 Score=90.62 Aligned_cols=391 Identities=17% Similarity=0.182 Sum_probs=259.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
...|+-++|........+.+ ..+.+.|..+.-.+....++++|+..|......+ +.|...+.-+.-.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 45689999999888877654 4567788888888888899999999999999877 667888888777778888888877
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCcCHHhHHHHH------HHHHcCCChHHHHHHH
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVI------GLYRDNGMWKKAVGIV 240 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~ 240 (532)
..-....+..+ .....|..+.-++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|.+.+
T Consensus 130 ~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77666666432 456688888999999999999999999987664 245555554333 2445678888888777
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHHCC
Q 009556 241 EEIREMGLSLDRQ-IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC-KAGDVAKAL-ELFTQMQEQG 317 (532)
Q Consensus 241 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~~ 317 (532)
..-... ..|.. .-..-...+.+.+++++|..++..+... .||..-|...+..+. +-.+.-+++ .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 655433 11222 2233456678899999999999999886 466666665554443 344444444 556555443
Q ss_pred CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHH----c------
Q 009556 318 FYPDPKI-FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKL----E------ 386 (532)
Q Consensus 318 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~------ 386 (532)
.|.... ...=+.......-.+...+++....+.|+++ ++..+...|-.-...+-.+++.-.+.. .
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 121111 1111122222333445556667777777654 333333333322211111111111111 0
Q ss_pred ----CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 387 ----GLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (532)
Q Consensus 387 ----~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (532)
.-+|....|. .++..+-+.|+++.|...++....+ .|+. ..|..=.+.+...|++++|..++++.++.+ .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 0145555554 4677888999999999999999876 5554 456666688999999999999999998864 3
Q ss_pred CCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 460 PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 460 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
||...=..-..-..++++.++|.++.....+.|.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4655444666677788999999999988887775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=110.04 Aligned_cols=250 Identities=12% Similarity=0.018 Sum_probs=161.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG---------KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGD 302 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 302 (532)
.+++|.+.|++..+... .+...|..+..++. ..+++++|...+++..+.... +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 45778888888877642 23445555544433 234578888888888776432 66677777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHH
Q 009556 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 382 (532)
+++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888888764 234566777777888888888888888888877533 333333344456667888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 009556 383 LKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI-GISP 460 (532)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p 460 (532)
+.....+-+...+..+...+...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+. .-.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 776542334455667777788888888888888887654 333 334455555666666 4777766666542 1112
Q ss_pred CHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC
Q 009556 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG 492 (532)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 492 (532)
....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222 33344445665555555 7776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-08 Score=90.72 Aligned_cols=384 Identities=11% Similarity=0.074 Sum_probs=244.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYH 192 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~ 192 (532)
+....+-|.++|.+++|++.|.+.++. .|| +..|.....+|...|+|++..+--....+.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334566778999999999999999986 477 8889999999999999999998887777743 43 34666667788
Q ss_pred HhcCChHHHHHHHHHH-HHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHh-----
Q 009556 193 VNAGRLDDTWLIINEM-RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE-MG--LSLDRQIYNSIIDTFG----- 263 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~li~~~~----- 263 (532)
-..|++++|+.-..-. +-.|+. |..+--.+=+.+- ..|..-.++-.+ .+ +-|+....++....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 8888888876433222 111221 1111111111111 111222222222 11 2233333222222211
Q ss_pred ----cc----------------C---CHHHHHHHHHHHHhC-CCCC--C---------HHHHHHHHHHHHHcCCHHHHHH
Q 009556 264 ----KY----------------G---ELVEALEVFEKMQQE-SIRP--D---------IVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 264 ----~~----------------g---~~~~A~~~~~~m~~~-~~~p--~---------~~~~~~li~~~~~~g~~~~A~~ 308 (532)
+. + .+..|.+.+.+-... ...+ + ..+...-..-+.-.|+.-.|.+
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 00 0 122222222221110 0001 1 1111111112344678889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC
Q 009556 309 LFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (532)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 388 (532)
-|+..+.....++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-.+++.-.+++++|..-|++.+..+
T Consensus 348 d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~- 424 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD- 424 (606)
T ss_pred hHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 99998876544332 37777778999999999999999999887 5677888888888888999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 009556 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS-----PDLV 463 (532)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~ 463 (532)
+-+...|-.+.-+..+.+.++++...|++..+. ++.....|+.....+..+++++.|.+.|+..++.... .+..
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 234556666677777889999999999999876 4667789999999999999999999999999864211 1222
Q ss_pred --HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHhhhhh
Q 009556 464 --TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR-KARQILQSALVVLEQRRC 515 (532)
Q Consensus 464 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~a~~~~~~~~~ 515 (532)
.-..++..- -.+++..|.+++++..+ +.|.. ..+..|....+..++.+.
T Consensus 504 plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 504 PLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred hhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHH
Confidence 222222222 23889999999999987 55543 356666666655555444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-07 Score=85.68 Aligned_cols=408 Identities=14% Similarity=0.219 Sum_probs=259.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL-GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
..|-.-+..+.++|++......|++.... -+......|...+.-....+-++-+..+|++.++ .++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 45777788888999999999999987654 2333456788888888889999999999999886 344446777888
Q ss_pred HHhcCChhHHHHHHHHHHHc------CCCcCHHHHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCcC--HHhHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDM------GICRNQETYEILLDYHVNAGRLDDTW---LIINEMRSKGFQLN--SFVYGKVIG 225 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~~~--~~~~~~ll~ 225 (532)
+++.+++++|.+.+...... ..+.+-..|..+-+..+++.+.-..+ .+++.+... -+| ...|.+|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 89999999999988887643 22345567777777777665543332 333333322 234 356889999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----------------cC------CHHHHHHHHHHHHhCC-
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----------------YG------ELVEALEVFEKMQQES- 282 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g------~~~~A~~~~~~m~~~~- 282 (532)
-|.+.|.+++|.++|++.... .....-|..+.+.|+. .+ +++-.+.-|+.+...+
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998765 2233334444444432 11 2333344455444331
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 283 ----------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP------DPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 283 ----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
-+.++..|..-+. ...|+..+-...+.+.... +.| -...+..+...|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1123334433333 2346677777777777653 223 23457778888889999999999999
Q ss_pred HHHhcCCCCC---HhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHhcC
Q 009556 347 NMKDRGHGKI---GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ----------P-------SGSMFCILANAYAQQG 406 (532)
Q Consensus 347 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~li~~~~~~g 406 (532)
+..+...+.- ..+|..-.++-.+..+++.|.++.+......-. | +...|...++.--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8877654332 445666666666777888888887766432111 1 2345666666666677
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCcChHH
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-TYSTLMKAFIR---AKKFHKVP 482 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~---~g~~~~a~ 482 (532)
-++....+++.+.+..+.......| ....+-.+.-++++.+++++-+..=..|++. .|+..+..+.+ .-+.+.|.
T Consensus 492 tfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 7888888888877665432222211 2223344555677777776655443334443 56666555543 23467788
Q ss_pred HHHHHHHhCCCCCCHH
Q 009556 483 EIYKQMESSGCTPDRK 498 (532)
Q Consensus 483 ~~~~~m~~~g~~p~~~ 498 (532)
.+|++..+ |++|+..
T Consensus 571 dLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHHHh-cCCHHHH
Confidence 88888877 6666543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-07 Score=81.94 Aligned_cols=412 Identities=10% Similarity=0.040 Sum_probs=248.5
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
...++...|-.|...+.-.|.+.+|..+-....+ ++-.-..+...-.+.++-++-..+.+.+.+. ..---
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqL 155 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQL 155 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHH
Confidence 3456667777777777777888888877665432 3333444555566778877777777766532 23334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc-
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD-YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD- 229 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~- 229 (532)
+|.....-.-.+.+|++++.++...+ |+-...|..+. .|.+..-++-+.++++-..+. ++-+....+.......+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhh
Confidence 45555555567899999999998753 45555555544 566777888888888887765 22234444544433332
Q ss_pred -CCChHHHH--H----------HHHHHHHcCC------------CCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 230 -NGMWKKAV--G----------IVEEIREMGL------------SLD-----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 230 -~~~~~~a~--~----------~~~~~~~~~~------------~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
.|+..+.+ + ..+.+.+.++ -|. +..--.|+-.|.+.+++.+|..+.+++.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 22221111 1 1111222110 010 1112234445788999999999887764
Q ss_pred hCCCCCCHHHHHHHHHH--HHHcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 280 QESIRPDIVTWNSLIRW--HCKAGD-------VAKALELFTQMQEQGFYPDPK-IFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 280 ~~~~~p~~~~~~~li~~--~~~~g~-------~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
-. ++. .-++.+ ++..|+ ..-|.+.|+-.-+++..-|.. --.++.+.+.-..++++..-+++.+.
T Consensus 313 Pt----tP~--EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 313 PT----TPY--EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred CC----ChH--HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 222 223332 233332 445556665544444333321 22344555555667889888888877
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHH
Q 009556 350 DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM 429 (532)
Q Consensus 350 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 429 (532)
.--...|...+ .+.++++..|.+.+|+++|-.+....++.+..-...|.+.|.+++.++.|++++-.+.. +.+..+
T Consensus 387 sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fs 462 (557)
T KOG3785|consen 387 SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFS 462 (557)
T ss_pred HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHH
Confidence 65444444444 57889999999999999999887665544444345566888999999999998877653 224444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 009556 430 LN-VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP-DRKARQILQSAL 507 (532)
Q Consensus 430 ~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~a~ 507 (532)
.- .+..-|.+++.+--|-+.|+.+... .|++..|. |+-....-+|..+....-.| ...+.+-++..+
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhll 531 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLL 531 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHH
Confidence 43 3446788999999999999988764 56776663 44444555666665443333 234555566666
Q ss_pred HHHhhhhhcc
Q 009556 508 VVLEQRRCKQ 517 (532)
Q Consensus 508 ~~~~~~~~~~ 517 (532)
...+..+|..
T Consensus 532 r~~~nsq~E~ 541 (557)
T KOG3785|consen 532 RMKPNSQCEF 541 (557)
T ss_pred HhCCCchHHH
Confidence 6655555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=94.79 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=169.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
|-.=-+.+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+...|+.+|.+-.+. .+-|+....-+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333456778888888888888888877765 477778888888888888888888888877664 2234434455667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+-..++.++|.++|+...+.. ..++.....+...|.-.++.+-|+..++++++.|.. +...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7777888888888888877653 225666666667777788888888888888888865 66677777777777778888
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
++.-|.+....-..|+ ...|-.+-......||+..|.+.|+-....+ .-+...++.+.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 8888877665433333 3456666667777888888888888777653 235567777777777888888888888877
Q ss_pred HhcC
Q 009556 349 KDRG 352 (532)
Q Consensus 349 ~~~~ 352 (532)
....
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-07 Score=84.33 Aligned_cols=410 Identities=11% Similarity=0.113 Sum_probs=227.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH--HHHHH--
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI--LLRGF-- 157 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~-- 157 (532)
+=++.+...|++++|.+...++...+ +.+...+..-+-++.+.+++++|+.+.+.-. -..+++. +=.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHH
Confidence 45677888999999999999999876 6667778888889999999999996554322 1112222 23444
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 236 (532)
.+.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++.+-.. -.+
T Consensus 90 Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV 161 (652)
T ss_pred HHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH
Confidence 468999999998883332 234467777888999999999999999997764331 11111222211111 011
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-------C-C-----CCCHHH-HHHHHHHHHHcCC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-------S-I-----RPDIVT-WNSLIRWHCKAGD 302 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~-~-----~p~~~~-~~~li~~~~~~g~ 302 (532)
. +.+..... ...+-..+......+...|++.+|+++++...+. + . .-+..+ --.|.-.+-..|+
T Consensus 162 ~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 Q-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11111111 0111111122233456677777777777766211 0 0 000111 1123334556777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHcc-------------------------------------------
Q 009556 303 VAKALELFTQMQEQGFYPDPKI----FITIISCLGEL------------------------------------------- 335 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~------------------------------------------- 335 (532)
-++|..++...+.... +|... -+.++..-...
T Consensus 240 t~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777765532 22211 11111110000
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH--hcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 336 --GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG--QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411 (532)
Q Consensus 336 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 411 (532)
+..+.+.++.... .+..|. ..+..++.... +...+..+.+++...-+....-...+.-.++......|+++.|
T Consensus 319 ~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 0001111100000 011111 22222322222 1223556666666665543322334555666777888999999
Q ss_pred HHHHH--------HhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCC
Q 009556 412 VKVLQ--------LMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI--GISPD----LVTYSTLMKAFIRAKK 477 (532)
Q Consensus 412 ~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~ 477 (532)
.+++. ...+.+..|-. ...+...+.+.++-+.|..++.+.... .-.+. ..++.-+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99888 45544444444 445666777777777777777766531 00111 2233444444457799
Q ss_pred cChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhh
Q 009556 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 478 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~ 515 (532)
-++|..+++++.+. -.+|..+...++.++......+.
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka 510 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKA 510 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHH
Confidence 99999999999873 24577788888888887766554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-08 Score=97.45 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=103.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---C--CC-CCCH-H
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQE-----SI-RPD-IVTWNSLIRWHCKAGDVAKALELFTQMQE---Q--GF-YPDP-K 323 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~-~~~~-~ 323 (532)
+...|...+++++|..+|+++... |. .|. ..+++.|...|.+.|++++|...+++..+ . |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344445555555555555544321 11 111 22344444455555555555554444321 1 11 1111 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc-----C--CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC-------CC
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMKDR-----G--HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-------LQ 389 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~ 389 (532)
.++.+...|...+++++|..++....+. + .+.-..+++.|...|.+.|++++|+++++.+.... ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2344444555556666666555544321 1 11224456667777777777777777776664321 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEP----EGI-EPN-LVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
-....++.+...|.+.+.+.+|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234566677777777777777777665432 221 222 3567788888888888888888877665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.6e-07 Score=84.84 Aligned_cols=418 Identities=14% Similarity=0.117 Sum_probs=268.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..++..| ..+++..-+++.+.+.+. .+--..|.....-.+...|+-++|.+......+.. ..+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 4456666665 568899999988888774 34445566555566778899999999988888754 45678899998888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
....++++|++.|......+. -|...|.-+.-.-.+.++++........+.+... -....|.....++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987643 5666777776677788888888888777776522 24566788888888999999999
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHH------HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 238 GIVEEIREMG-LSLDRQIYNSIID------TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
.+.++..+.. -.|+...+..... ...+.|..++|.+.+..-... +.-....-.+-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999988764 2466666554433 345678888888887765543 1112222334556788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHH-HHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC
Q 009556 311 TQMQEQGFYPDPKIFITIIS-CLGELGKWDVIK-KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (532)
Q Consensus 311 ~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 388 (532)
..+... .||..-|...+. ++.+..+.-++. .+|....+.- +........=+.......-.+....++....+.|+
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 999986 567666665554 443333333333 5555544321 11111111111111112222334455666667776
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH----HHHHHhccCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 009556 389 QPSGSMFCILANAYAQQGLCEQTV----KVLQLMEPEG----------IEPNLV--MLNVLINAFGVAGKYKEALSVYHL 452 (532)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~ 452 (532)
++ ++..+...|-.-...+-.. .+...+...| -+|... ++-.++..+-+.|+++.|..+++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 54 3444444443322221111 1222221111 134443 445677889999999999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 009556 453 MKDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (532)
Q Consensus 453 m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~ 510 (532)
.++. .|+.+ .|..=.+.+.+.|+.++|..++++..+.+ .||...-..-.+-+++.
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 9875 56654 45556688899999999999999998753 34554333333333333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-08 Score=95.28 Aligned_cols=291 Identities=14% Similarity=0.116 Sum_probs=150.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh-HHHHHHHHHc---
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV-YGKVIGLYRD--- 229 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~--- 229 (532)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+... |..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556677788887777664443 32334455666677777777777777777777764 33333 3344333311
Q ss_pred --CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 230 --NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 230 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
..+.+...++++++.+.- |.......+.-.+.....+. .+...+..+..+|+++ +|+.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 124566666676665543 22222222221222211222 3344455555666532 344444444444444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 009556 307 LELFTQMQEQ----G----------FYPDP--KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (532)
Q Consensus 307 ~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (532)
.+++...... + -.|.. .++..+...|...|++++|..+++..+++. |..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 4444443321 1 01222 233344455566666666666666666553 23355566666666666
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH--------HHHHHHHHHHhcCC
Q 009556 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--------MLNVLINAFGVAGK 442 (532)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~li~~~~~~g~ 442 (532)
|++.+|.+.++.....+ .-|..+-+..+..+.+.|++++|.+++....+.+..|-.. .......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666554 2344445555556666666666666666665544322111 11233455566666
Q ss_pred HHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMK 454 (532)
Q Consensus 443 ~~~A~~~~~~m~ 454 (532)
+..|++.|....
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-09 Score=98.96 Aligned_cols=252 Identities=16% Similarity=0.205 Sum_probs=170.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CC-C
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQE-----SI-RPDIVT-WNSLIRWHCKAGDVAKALELFTQMQEQ-----GF-YP-D 321 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~-~ 321 (532)
..+..+|...|+++.|+.+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++... |- .| -
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33455555555555555555444332 11 123332 234677889999999999999998642 21 12 2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCC-HhHHHHHHHHHHhcCCcccHHHHHHHHHHc---CCCC-
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDR-----GH-GKI-GAIYAILVDIYGQYGRFRDPEECIAALKLE---GLQP- 390 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~- 390 (532)
..++..|..+|.+.|++++|...++.+.+. +. .+. ...++.+...+...+++++|..+++...+. -+.+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 355677777899999999998887776531 11 122 344667788889999999999998866431 1222
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C
Q 009556 391 ---SGSMFCILANAYAQQGLCEQTVKVLQLMEPE-----G-IEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKD----I 456 (532)
Q Consensus 391 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~ 456 (532)
-..+++.|...|...|++++|.+++++.... | ..+ ....++.|...|.+.+++.+|.++|.+... .
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2467999999999999999999999987542 1 122 245678899999999999999999987642 2
Q ss_pred CC-CCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHh---C---CCCCCHHHHHHHHHHH
Q 009556 457 GI-SPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMES---S---GCTPDRKARQILQSAL 507 (532)
Q Consensus 457 ~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~---g~~p~~~t~~~l~~a~ 507 (532)
|. .|+ ..+|..|...|.+.|++++|.++.+.... . ...|+..........+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL 501 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHH
Confidence 32 233 34789999999999999999999888762 1 3445555444444333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-08 Score=93.91 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=213.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA- 195 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 195 (532)
-....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.++ .|..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3456678899999999999875543 344456677888999999999999999999999764 4444555555555222
Q ss_pred ----CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 196 ----GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK-KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 196 ----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+.+...++|+++...- |.......+.-.+.....+. .+...+..+...|++ .+++.+-..|....+.+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 25678888999887763 44444444433333323333 445566677777754 367777777876666666
Q ss_pred HHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQE----S----------IRPDIV--TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLG 333 (532)
Q Consensus 271 A~~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 333 (532)
..+++...... + -.|... ++.-+...|...|++++|++++++.++. .|+ +..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 66676665432 1 124443 3456678889999999999999999986 444 677888888999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHH------H--HHHHHHHHhc
Q 009556 334 ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM------F--CILANAYAQQ 405 (532)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~ 405 (532)
+.|++.+|...++.....+ ..|..+-+-.+..+.++|+.++|.+++..+.+.+..|.... | .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 45677778889999999999999999999987775443221 2 3346788899
Q ss_pred CCHHHHHHHHHHhc
Q 009556 406 GLCEQTVKVLQLME 419 (532)
Q Consensus 406 g~~~~A~~~~~~m~ 419 (532)
|++..|++.|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998888765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-09 Score=92.67 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=161.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh-HHHHHHHHH
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV-YGKVIGLYR 228 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~ 228 (532)
-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+..+++.|+.++.+-.+. -|-.+| ..-+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367888888999999998888877664 366778888888898888899998888887764 343344 445566777
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (532)
..++.++|.++++...+.. +.++.....+...|.-.++.+-|+..++++.+-|+. +...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7888888888888887764 334545555555666677788888888888877775 66677777777777778888877
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc
Q 009556 309 LFTQMQEQGFYPD--PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (532)
Q Consensus 309 ~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 386 (532)
-|.+....--.|+ ..+|-.+-......|++..|.+.|+.....+ +.+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7777665432232 2344455555566777777777777766554 345566666666666777777777777666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-06 Score=75.16 Aligned_cols=398 Identities=14% Similarity=0.102 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
.-...+..|...++-+.|+....+.+... ...--+.++..+-+.| +..++.--+.+....- +.-... |.+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL~~----i~~l 170 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMALQV----IEAL 170 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHHHH----HHHH
Confidence 33456777778899999988877665432 1222333444443333 2222222233322211 111111 1111
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHcCCChH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN--AGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.+.+ +..+...=..|-...++|+..+...-+.+++. .++...|...+-.+.... ++-|+.....+.+.+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 1111 00011111122222333444444444444433 444455555555444333 4557778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDR-QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+|+..|+.....+ |+. .......-.+.+.|+.+....+...+.... .-....|-.-.......++++.|+.+-++.
T Consensus 250 ~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 250 QAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred HHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999887653 222 222222333567788888888777776541 113334444455566778899999998888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
.+.. +-+...|..-...+...++.++|.-.|+...... |.+...|..|+..|...|++.+|...-+...+. .+.+..
T Consensus 327 I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~ 403 (564)
T KOG1174|consen 327 IDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSAR 403 (564)
T ss_pred hccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchh
Confidence 7653 2233444444556778899999999999887764 567889999999999999999998877765543 233444
Q ss_pred HHHHHH-HHHHhcC-CHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 394 MFCILA-NAYAQQG-LCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 394 ~~~~li-~~~~~~g-~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
+...+. ..+.-.- --++|.++++..... .|+ ....+.+...|...|+.+++..+++.... ..||....+.|.+
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGD 479 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHH
Confidence 544442 2333222 347788888877654 454 34567778889999999999999998876 4689999999999
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
.+...+.+++|.+.|..... +.|+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 99999999999999998886 56644
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-07 Score=85.97 Aligned_cols=218 Identities=14% Similarity=0.046 Sum_probs=149.3
Q ss_pred CChHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 91 GDIDEAMALLAQMQALG-FHP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
+..+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46677788887777543 112 23457778888889999999999999998875 456788999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
..|++..+... -+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...+++.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999987543 346678888888889999999999999988763 332222222233445678899999987655432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 248 LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SI--R-PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
.++...+ .+...+ .|+...+ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+..
T Consensus 196 -~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVEFY--LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHHHH--ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232222 233222 4444333 233333321 11 0 123567788888888899999999998888754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-06 Score=83.97 Aligned_cols=129 Identities=10% Similarity=0.114 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 009556 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (532)
Q Consensus 359 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (532)
.|....+.+.+.+..++|...+.+..+.. +-....|......+...|..++|.+.|....... +-++....++..++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 45556677777788888877777776543 3345556666666777788888888888776543 334567778888888
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 439 VAGKYKEALS--VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 439 ~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.+.|.+.|....+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8887777777 8888877653 3677888888888888888888888887765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-06 Score=79.21 Aligned_cols=270 Identities=10% Similarity=0.006 Sum_probs=135.3
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH
Q 009556 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ-ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG 221 (532)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 221 (532)
++.|+.....+...+...|+.++|...|++....+ |+. .......-.+.+.|+.++...+...+.... +-....|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34455666666666666666666666666665522 211 111222223345566666555555554331 01122222
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG 301 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 301 (532)
.-........+++.|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+....... -+...|.-|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 22333344556666666666555543 12333333333445556666666666666554311 24556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITII-SCLG-ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 379 (532)
.+.+|.-.-+..... +..+..+...+. ..|. ...--++|.++++...+.. |.-....+.+...+...|..++++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHH
Confidence 666666554443322 222333333331 1111 2223455666666555443 22234445555566666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 380 IAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
++..... .||....+.|.+.+...+.+.+|.+.|....+.
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6655543 455555666666666666666666666555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-07 Score=77.80 Aligned_cols=198 Identities=13% Similarity=-0.003 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
+.-.|.-+|.+.|++..|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|+...+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556667888999999999999988875 4556788888888888999999999998888765 456677888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
..|++++|...|++......-+ -..+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887652222 2346777777777888888888888877766322 3445566666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
..++.....+. ++..+.-..|..-...|+.+.+.+.=..+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777666654 5666666666666666766666655444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-07 Score=78.11 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH-HHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI-LLRGFL 158 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~ 158 (532)
+.+.+..+.+..+++.|++++..-.++. +.+....+.+..+|-...++..|-+.|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4667777888999999999999988874 347778888889999999999999999998764 355544432 345667
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLD--YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+.+.+..|+++...|.+. ++...-..-+. .....+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788999999999888753 22222222222 2345678888888888776433 445555555566789999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-------------CCHH---------------
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-------------PDIV--------------- 288 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~--------------- 288 (532)
.+-|+...+-+--.....||..+.. .+.|+++.|++...++.++|++ ||+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9999999886544566777766654 4678899999999999887643 1211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 289 TWNSLIRWHCKAGDVAKALELFTQMQE-QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
.+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.- ..+++.+..+-+.-+...+ |....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 122223345677888888888887752 22345666665543322 2334555555555555554 34567788888888
Q ss_pred HhcCCcccHHHHHHH
Q 009556 368 GQYGRFRDPEECIAA 382 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~ 382 (532)
|+..-++-|-+++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888877777655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-07 Score=75.62 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=138.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
...+.-.|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+... .+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 4456667778888888888888888765 44566777788888888888888888888777543 455677777777888
Q ss_pred cCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
.|++++|...|++......-+ -..+|..+.-+..+.|+.+.|...|++..+... ......-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888776653222 345677777777777888888888777777642 234455566666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
.++.....+. ++..+.-..|+.--..|+.+.+-++=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777766655 5666666666666677777776666555554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-07 Score=84.47 Aligned_cols=218 Identities=10% Similarity=0.027 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHHHCC-CCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH
Q 009556 126 GRTLEADAIFQEMVCFG-FNP--KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 202 (532)
+..+.++.-+.++.... ..| ....|..+...|.+.|+.++|...|++..+..+ .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776432 112 234567777778888888888888888877543 45677888888888888888888
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 009556 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 203 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 282 (532)
+.|++..+.... +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888765322 45666777777778888888888888877754 222211122222344567788888776544321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---C--C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG---F--Y-PDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~--~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
.|+. |. ........|+...+ +.+..+.+.. . . .....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 21 11222334554443 2444443210 0 0 112455666666667777777777777666655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-06 Score=79.58 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcc
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
...++...|+.+.|..+++.+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 34445555666666666655543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-06 Score=80.34 Aligned_cols=197 Identities=12% Similarity=0.011 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGF-HPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
.|..+...+...|+.+++.+.+.+..+... ..+.. ........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344555566666778777766666554421 11221 12222344557788888888888877653 334444432 222
Q ss_pred HH----hcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 157 FL----KKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 157 ~~----~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 22 234444555444431 111222 233445556777788888888888887776422 4556666777777778
Q ss_pred ChHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 232 MWKKAVGIVEEIREMGLS-LDR--QIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
++++|...+++..+.... ++. ..|..+...+...|++++|..++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888777777654321 222 2344566677777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-05 Score=77.79 Aligned_cols=413 Identities=12% Similarity=0.080 Sum_probs=255.2
Q ss_pred HHcCChHHHHHH----HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 88 CKLGDIDEAMAL----LAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 88 ~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
.-..+.+++.-. +.++....+.-|...|..+.-++...|+++.+.+.|++....- .-....|..+...|.-.|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 344556666543 3333333456678889999889999999999999999887533 34567788888888888988
Q ss_pred hHHHHHHHHHHHcCCCcC-HHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--CC--CcCHHhHHHHHHHHHcC-------
Q 009556 164 GLGSRLLMVMEDMGICRN-QETYEILLDYHV-NAGRLDDTWLIINEMRSK--GF--QLNSFVYGKVIGLYRDN------- 230 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~------- 230 (532)
..|..+++.-......|+ ...+-..-..|. +.+..+++++.-.+..+. +. ......|..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 888888887665442343 333433334443 345667777766666541 11 11233344444333321
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 231 ----GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 231 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
....++++.+++..+.+.. |..+...+.--|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|
T Consensus 454 seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 1245677778888776533 33333333445777889999999999888875566888899888888999999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----------------------------CCCCCH
Q 009556 307 LELFTQMQEQ-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR----------------------------GHGKIG 357 (532)
Q Consensus 307 ~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~ 357 (532)
+.+.+...+. |. |......-+..-...++.+++......+... ......
T Consensus 533 l~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 533 LDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 9998876643 21 1111111111112233433333322222110 000111
Q ss_pred hHHHHHHHHHHhcC---CcccHHHHHHHHHHcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 358 AIYAILVDIYGQYG---RFRDPEECIAALKLEGLQP--S------GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 358 ~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
.++..+.......+ ..+.. +....+.| + ...|......+.+.++.++|...+.+..... +-.
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~ 683 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLS 683 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhh
Confidence 22222211111000 00000 11111112 2 2346666778888999999988887776542 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcChHHH--HHHHHHhCCCCC-CHHHHHH
Q 009556 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPE--IYKQMESSGCTP-DRKARQI 502 (532)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g~~p-~~~t~~~ 502 (532)
...|......+...|..++|.+.|...... .| ++.+..++...+.+.|+..-|.. ++..+.+ +.| +...|..
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~ 759 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYY 759 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 667777778888999999999999988764 44 45588999999999999888888 8999987 445 6678999
Q ss_pred HHHHHHHHhhhhh
Q 009556 503 LQSALVVLEQRRC 515 (532)
Q Consensus 503 l~~a~~~~~~~~~ 515 (532)
+...+...|+-+.
T Consensus 760 LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHHccchHH
Confidence 9988888887653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-05 Score=75.17 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=52.2
Q ss_pred HHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 009556 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKY 443 (532)
Q Consensus 364 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 443 (532)
...+.+.|++..|...+.++++.+ +-|...|....-+|.+.|.+..|++-.+...+.. ++....|.-=..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 344455666666766666666654 4456666666666666666666666555555442 22233333334444445566
Q ss_pred HHHHHHHHHHHHC
Q 009556 444 KEALSVYHLMKDI 456 (532)
Q Consensus 444 ~~A~~~~~~m~~~ 456 (532)
+.|.+.|++..+.
T Consensus 443 dkAleay~eale~ 455 (539)
T KOG0548|consen 443 DKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.4e-06 Score=90.16 Aligned_cols=336 Identities=11% Similarity=0.016 Sum_probs=177.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CcC--HHHHHHHHHHH
Q 009556 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI------CRN--QETYEILLDYH 192 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~ 192 (532)
.+...|+++.+..+++.+.......+..........+...|+++++...++.....-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3444566666666655542111111222233344455567788888777776644210 011 11122233445
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHcCCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHh
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-----SLDRQIYNSIIDTFG 263 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~ 263 (532)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++...... ......+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5677888888887776653111121 2334445556677888888877777654211 111234445556667
Q ss_pred ccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 009556 264 KYGELVEALEVFEKMQQE----SIR--P-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GFYPD--PKIFITIISCL 332 (532)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~--~~~~~~ll~~~ 332 (532)
..|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 778888888777765432 211 1 1223344455566678888888777776432 11111 22333344566
Q ss_pred HccCCHHHHHHHHHHHHhcCCCC-CHhHH-----HHHHHHHHhcCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 009556 333 GELGKWDVIKKNFENMKDRGHGK-IGAIY-----AILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYA 403 (532)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 403 (532)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 67788888877777664321100 00001 1112334456777777777655433211111 011334556677
Q ss_pred hcCCHHHHHHHHHHhccC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 404 QQGLCEQTVKVLQLMEPE----GIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
..|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888887777766432 22221 234555666777788888888887777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.1e-06 Score=88.41 Aligned_cols=336 Identities=12% Similarity=0.002 Sum_probs=212.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CcCH--HhHHHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF------QLNS--FVYGKVIGLY 227 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~--~~~~~ll~~~ 227 (532)
.....|+++.+...++.+.......+..........+...|+++++...+......-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777666653211112222234445556678999999999887754311 1111 1122233455
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSLDR----QIYNSIIDTFGKYGELVEALEVFEKMQQE----SI-RPDIVTWNSLIRWHC 298 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~ 298 (532)
...|++++|...+++..+.....+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999998764212221 34455666778899999999999887642 11 111234455667788
Q ss_pred HcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCCHhHHHHHHHHH
Q 009556 299 KAGDVAKALELFTQMQE----QGFY--P-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVDIY 367 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~ 367 (532)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999888653 2221 1 2233445555677789999999998887643 1111233445566778
Q ss_pred HhcCCcccHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHH
Q 009556 368 GQYGRFRDPEECIAALKLEGLQP-SGSMF-----CILANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFG 438 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~ 438 (532)
...|+.++|.+.++......... ....+ ...+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875421111 11111 11224455678999999998776543211111 12346677888
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 439 VAGKYKEALSVYHLMKDI----GISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987642 33332 235667778889999999999999999864
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-06 Score=74.93 Aligned_cols=326 Identities=12% Similarity=0.076 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH-HHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEI-LLDY 191 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~ 191 (532)
.-+.+++..+.+..++..|++++..-.++. +.+....+.|..+|....++..|-..++++... .|....|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346677888889999999999999888775 347788899999999999999999999999874 355555543 3456
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG--LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (532)
+.+.+.+.+|+.+...|.+. |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 67889999999999888763 22221111222 2345788888888888776433 4555566666678999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHH
Q 009556 270 EALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-------------DPK--------IFIT 327 (532)
Q Consensus 270 ~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~~--------~~~~ 327 (532)
+|.+-|+...+- |.. ....||.-+ +..+.|+++.|+++..++.++|++. |.. .-+.
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999988775 555 456777655 4557889999999999998877532 211 1122
Q ss_pred HHH-------HHHccCCHHHHHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 328 IIS-------CLGELGKWDVIKKNFENMKDR-GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA 399 (532)
Q Consensus 328 ll~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (532)
++. .+.+.++++.|.+.+.+|..+ ....|+.+...+.-. -..+++.+..+-+.-+...++ ....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 333 345778899999888888633 334566665543322 124556666666666665543 3457888899
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGV-AGKYKEALSVYHL 452 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 452 (532)
-.||++.-++-|-+++.+-...... .+...|+ |++++.. .-..++|.+-++.
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998888764332111 1223333 3344333 3345555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-05 Score=71.59 Aligned_cols=410 Identities=10% Similarity=0.127 Sum_probs=242.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-|..+|+.||+.+..+ .++++.+.++++... ++..+..|..-|..-...++++....+|.+.+..- .+...|..-+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 3778999999988665 999999999999865 35567889999999999999999999999988653 4566777666
Q ss_pred HHHHh-cCChhH----HHHHHHHHH-HcCCCc-CHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCc---
Q 009556 155 RGFLK-KGLLGL----GSRLLMVME-DMGICR-NQETYEILLDYH---------VNAGRLDDTWLIINEMRSKGFQL--- 215 (532)
Q Consensus 155 ~~~~~-~g~~~~----A~~~~~~m~-~~~~~~-~~~~~~~li~~~---------~~~~~~~~a~~~~~~m~~~~~~~--- 215 (532)
+.-.+ .|+... ..+.|+-.. +.|..+ +-..|+..+..+ ..+.+.+...++|+++....+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54443 233333 233344333 334333 223466555543 33445667777888876542221
Q ss_pred ---CHHhHHHHHHHH-------HcCCChHHHHHHHHHHHH--cCCCCCH---------------HHHHHHHHHHhccC--
Q 009556 216 ---NSFVYGKVIGLY-------RDNGMWKKAVGIVEEIRE--MGLSLDR---------------QIYNSIIDTFGKYG-- 266 (532)
Q Consensus 216 ---~~~~~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~---------------~~~~~li~~~~~~g-- 266 (532)
|-.+|..-++.. -+...+..|.++++++.. .|+..+. ..|-.+|..=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222222211 123456667777776643 2322111 12333333221111
Q ss_pred ----CH--HHHHHHHHHHH-hCCCCCCHHH-HHHH----HHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 267 ----EL--VEALEVFEKMQ-QESIRPDIVT-WNSL----IRWHCKAGD-------VAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 267 ----~~--~~A~~~~~~m~-~~~~~p~~~~-~~~l----i~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
.. ....-.+++.. --+..|++-- |... -+.+...|+ -+++..++++..+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111112111 1122222211 0111 112233333 3455555555543322223344433
Q ss_pred HHHHHHcc---CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 009556 328 IISCLGEL---GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-SGSMFCILANAYA 403 (532)
Q Consensus 328 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 403 (532)
+.+.--.. ...+....+++++.......-..+|..+++.-.+..-+..|..+|.+..+.+..+ +....++++.-||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 33321111 1255556666666655444445677788888888888889999999998887766 6667777777665
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcChH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDL--VTYSTLMKAFIRAKKFHKV 481 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 481 (532)
.++.+-|.++|+.-.+. ...+..--...++-+...++-..|..+|++....++.||. ..|..++.--..-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46888899998875544 1233444467778888888888999999999887666654 5788998888888999888
Q ss_pred HHHHHHHHh
Q 009556 482 PEIYKQMES 490 (532)
Q Consensus 482 ~~~~~~m~~ 490 (532)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 888887764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-05 Score=78.28 Aligned_cols=321 Identities=11% Similarity=0.118 Sum_probs=179.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
|+.-.+..++++...+-..+-+++++++.-.. +..+...-|.|+-...+. +.....+..+++...+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------H
Confidence 45555566777777777777777777776321 112222233333333332 33344444444443221 22 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...+..++-+++|+.+|++... +....+.++. .-+..+.|.+.-++.. .+.+|..+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3444556667777777766422 3444444443 2344555555444332 345677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
.+|.+-|-+.. |+..|..++....+.|.+++-.+.+...++..-.|... +.++-+|++.++..+.+.++
T Consensus 1121 ~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 77777664432 56677777777777788877777777666654444433 35677777777766665543
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
..|+......+.+-+...+.++.|.-+|..+ .-|..|...+...|++..|.+.-++.- +..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chh
Confidence 2355555566666666667776666666543 236666666666777766665544432 445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
||..+-.+|...+.+.-|. |-..++.....-..-|+..|-..|-+++.+.+++.-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6666555665554443332 222222233334455555555555555555554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-07 Score=84.44 Aligned_cols=247 Identities=15% Similarity=0.106 Sum_probs=128.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (532)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666654444 222222223334445566667777655432 3333322 445444444443333334444555
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 273 EVFEKMQQESIRPDIVTWN-SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
.-+++.......++..++. .....+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444433332222222222 2223445567777777766542 34556666777777777777777777777654
Q ss_pred CCCCCHhHHHHHH----HHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH
Q 009556 352 GHGKIGAIYAILV----DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (532)
Q Consensus 352 ~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (532)
+ .| .+...+. ..+...+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.. +-|.
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 3 22 2222233 3222234577777777776544 35666777777777777777777777777766553 3355
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009556 428 VMLNVLINAFGVAGKY-KEALSVYHLMKD 455 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 455 (532)
.++..++.+....|+. +.+.+++.++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5666666666666666 556667776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00017 Score=68.91 Aligned_cols=387 Identities=13% Similarity=0.097 Sum_probs=206.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA--SVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
...+..=+-++.+.++|++|+.+.+.-.... ..+... +=.+|| +.+..++|+..++-.. +.+..+...-.
T Consensus 46 ~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~A 117 (652)
T KOG2376|consen 46 EDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRA 117 (652)
T ss_pred HhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHH
Confidence 3444455566778899999986655432110 111111 234444 6788898888887222 23344666667
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH---HHHcC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG---LYRDN 230 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~---~~~~~ 230 (532)
..+.+.|++++|..+|+.+.+.+.+- +...-..++.+-.. -.+ +.+......| ..+|..+.+ .+...
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQSVPEVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHHhccCCC-cchHHHHHHHHHHHHhc
Confidence 78888999999999999987654311 11111111111000 000 0112221222 334444443 33456
Q ss_pred CChHHHHHHHHHHHHcC-------CCCC------H-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH----HHH
Q 009556 231 GMWKKAVGIVEEIREMG-------LSLD------R-QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVT----WNS 292 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ 292 (532)
|++.+|+++++...+.+ -.-+ . .+-..|.-.+-..|+.++|.+++......... |... -|.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NN 267 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNN 267 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcc
Confidence 77777777776662211 0000 0 11223334455667777777777666654321 2211 111
Q ss_pred HHHHHH---------------------------------------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 293 LIRWHC---------------------------------------------KAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 293 li~~~~---------------------------------------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
++..-. -.+..+.+.++.... .+..| ...+..
T Consensus 268 Lva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p-~~~~~~ 344 (652)
T KOG2376|consen 268 LVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSP-ESLFPI 344 (652)
T ss_pred hhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCc-hHHHHH
Confidence 111000 000111111111111 01222 233444
Q ss_pred HHHHHHcc--CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHH--------HHHHcCCCCCHHHHHH
Q 009556 328 IISCLGEL--GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA--------ALKLEGLQPSGSMFCI 397 (532)
Q Consensus 328 ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 397 (532)
++..+.+. .....+..++...-+........+.-.++......|+++.|.+++. .+.+.+..| .+...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHH
Confidence 44443322 2356666666666555433345566677888889999999999998 555554444 45566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEPE--GIEPNLV----MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (532)
+...+.+.++-+.|..++.+.... .-.+... ++..+...-.+.|+-++|..+++++.+. .++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHH
Confidence 777788888777777777665432 0011222 3333344445679999999999999885 35688888999998
Q ss_pred HHhcCCcChHHHHHHHH
Q 009556 472 FIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 472 ~~~~g~~~~a~~~~~~m 488 (532)
|++. +.+.|..+-+.+
T Consensus 502 ~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhc-CHHHHHHHhhcC
Confidence 8875 356666655544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=84.27 Aligned_cols=253 Identities=12% Similarity=0.120 Sum_probs=133.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
|+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 444556688888876665 222211222334556677778888766543 3333333 55555555554444333344
Q ss_pred hHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+.+..-+++....... .+..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433333222222 12222223334555667777777776542 2455556666777777777777777777
Q ss_pred HHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 243 IREMGLSLDRQIY---NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 243 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
|.+.+ .|.... .+.+..+.....+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.. +
T Consensus 157 ~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 157 MQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 76653 232221 22222222233577777777776554 44566667777777777777777777777765443 2
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhc
Q 009556 320 PDPKIFITIISCLGELGKW-DVIKKNFENMKDR 351 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 351 (532)
-++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2455566666666666665 5555666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-05 Score=77.71 Aligned_cols=191 Identities=17% Similarity=0.276 Sum_probs=103.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 009556 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDV 340 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 340 (532)
+......+.+|+.+++.+.+... -..-|..+...|+..|+++.|.++|-+.- .+.-.|..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445556666666666655422 12235555666666666666666664421 23345566666666666
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 341 IKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
|.++-.+.. +.......|-+-..-+-+.|++.+|++++-.+. .|+. .|..|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 666554432 222334445444555556666666666654432 2322 35566666666666666554322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHH
Q 009556 421 EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIY 485 (532)
Q Consensus 421 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 485 (532)
. .-..|-..+..-+-..|+.+.|..-|-+..+ |.+-+..|..++-+++|.++-
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 1 1123444556666677777777766654433 455555566666666555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00013 Score=72.13 Aligned_cols=240 Identities=15% Similarity=0.145 Sum_probs=132.4
Q ss_pred CChhhHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-------C-
Q 009556 75 FSGNSYNKSIQY--CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-G-------F- 143 (532)
Q Consensus 75 ~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g-------~- 143 (532)
.|..+=.++++. |..-|+.+.|.+-.+.++.. ..|..+.+.|.+..+++-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 455555566553 55667778777777777664 35777777777777766666555544321 1 0
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 223 (532)
.++ .+-....-.....|.+++|..+|++-+. |..|=..|-..|.+++|+++-+.=.+-. =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 121 2222223333456777777777776665 3334445566677777776655432221 22344444
Q ss_pred HHHHHcCCChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 009556 224 IGLYRDNGMWKKAVGIVEEI----------REMG---------LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR 284 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 284 (532)
..-+...++.+.|++.|++. +... -..|...|......+-..|+++.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 44455555666666555532 1110 123455555566666667788888887776653
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
|-++++..|-.|+.++|-++-++- | |......+.+.|...|++.+|...|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345555566666666666554431 1 3333334555666666666666655544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-06 Score=81.44 Aligned_cols=224 Identities=15% Similarity=0.101 Sum_probs=153.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
-.-+.+.|++.+|.-+|+.....+ +-+...|..|....+..++-..|+..+++..+.. +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344578899999999999888775 5667889999999999988888999999988875 45677888888888888888
Q ss_pred hHHHHHHHHHHHcCCCc--------CHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 164 GLGSRLLMVMEDMGICR--------NQETYEILLDYHVNAGRLDDTWLIINEMR-SKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
..|.+.++......++- +...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88988888876542110 0000000 01111122334445555543 3444467777777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+|.+.|+.++... +-|...||.|...++...+.++|+..|++..+. +|+ +.++..|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 8888888877764 346777888888888878888888888877764 343 233445566677778888877766654
Q ss_pred H
Q 009556 314 Q 314 (532)
Q Consensus 314 ~ 314 (532)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-08 Score=58.49 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-05 Score=72.86 Aligned_cols=215 Identities=8% Similarity=0.001 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
+++.+-..+...++.++|+.+.+++.+.. +-+..+|+....++...| ++++++..++.+.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45556666677889999999999999874 445567777777777777 6799999999998765 45667787766666
Q ss_pred HhcCCh--hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC---CC
Q 009556 158 LKKGLL--GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GM 232 (532)
Q Consensus 158 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~ 232 (532)
.+.|+. +++..+++++.+... .|..+|+....++...|+++++++.++++++.++. |..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 677888888887654 67888998888888999999999999999887655 566666665555443 22
Q ss_pred h----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 233 W----KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY----GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 233 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
. ++..+....++... +-|...|+-+...+... +...+|.+.+.+..+.++ .+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2 35566665666554 34667777777777662 334557777766655332 245555666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-06 Score=80.97 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=185.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 248 LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
.+|-...-..+...+.+.|-..+|..+|+++. .|...|.+|+..|+..+|..+..+..+ -+||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 34445555667788899999999999998765 477889999999999999999998887 3789999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (532)
+.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888888889999888776433 11122222334688999999998776654 3355678888888889999
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHH
Q 009556 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (532)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (532)
++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999887652 3356789999999999999999999999999877 34566788888888999999999999999
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHH
Q 009556 488 MESSGC-TPDRKARQILQSALVV 509 (532)
Q Consensus 488 m~~~g~-~p~~~t~~~l~~a~~~ 509 (532)
+.+... .-|......++....+
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHh
Confidence 874311 1144444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=58.36 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=24.1
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQ 104 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (532)
|..||.++||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 556777777777777777777777777777763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00027 Score=66.90 Aligned_cols=391 Identities=12% Similarity=0.153 Sum_probs=231.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.|..+|+.||+-+-.. ..+++.+.++++... ++-....|..-|..-.+..+++...++|.+....- -+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 67899999999988776 999999999999864 34567889999999999999999999999987653 467778777
Q ss_pred HHHHHhc-CChHH----HHHHHHHH-HHCCCCcC-HHhHHHHHHH---------HHcCCChHHHHHHHHHHHHcCCCCCH
Q 009556 189 LDYHVNA-GRLDD----TWLIINEM-RSKGFQLN-SFVYGKVIGL---------YRDNGMWKKAVGIVEEIREMGLSLDR 252 (532)
Q Consensus 189 i~~~~~~-~~~~~----a~~~~~~m-~~~~~~~~-~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (532)
++.-.+. ++... ..+.|+-. .+-|+.+- ...|+..+.. +....+++...++++++....+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7755443 33222 22233332 33454432 2234444432 22334555666777777654222111
Q ss_pred HHHHH------HHHHH-------hccCCHHHHHHHHHHHHh--CCCCCCH---------------HHHHHHHHHHHHcCC
Q 009556 253 QIYNS------IIDTF-------GKYGELVEALEVFEKMQQ--ESIRPDI---------------VTWNSLIRWHCKAGD 302 (532)
Q Consensus 253 ~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~---------------~~~~~li~~~~~~g~ 302 (532)
..|+- -|+.. -+...+..|.++++++.. +|...+. ..|-.+|.---.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 22221 11111 123356677777777653 2321111 113333332111110
Q ss_pred H--------HHHHHHHHH-HHHCCCCCCHHH-HHHHH----HHHHccCC-------HHHHHHHHHHHHhcCCCCCHhHHH
Q 009556 303 V--------AKALELFTQ-MQEQGFYPDPKI-FITII----SCLGELGK-------WDVIKKNFENMKDRGHGKIGAIYA 361 (532)
Q Consensus 303 ~--------~~A~~~~~~-m~~~~~~~~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 361 (532)
- ....-.+++ |.-.+..|+..- +...+ +.+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111112222 112233333211 11111 12233333 345566666655443333444555
Q ss_pred HHHHHHHhcCC---cccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC-CHHHHHHHHHHH
Q 009556 362 ILVDIYGQYGR---FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP-NLVMLNVLINAF 437 (532)
Q Consensus 362 ~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~ 437 (532)
.+.+.--..-+ .+.....++++......--..+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 44433222222 45556666666544322223458888888888888999999999999987777 778888888877
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR--KARQILQS 505 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~l~~ 505 (532)
| .++.+-|.++|+.=.+. ...++.--...++-+.+.|+-..+..+|++...+++.||. ..|..++.
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 7 56789999999976543 3334455567888889999999999999999998888775 45666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-05 Score=78.30 Aligned_cols=319 Identities=17% Similarity=0.196 Sum_probs=173.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
+.|+.|.+.|.+..|......=.. ...|......+..++.+..-+++|-.+|+++.. ++ ..+.+|-+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHccc
Confidence 467778888888777765432221 134666666666666666666666666666542 11 1122222211
Q ss_pred ChhHHHHHHHHHH----------------HcCCCcC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 009556 162 LLGLGSRLLMVME----------------DMGICRN--------QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (532)
Q Consensus 162 ~~~~A~~~~~~m~----------------~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 217 (532)
-+..|.++-+-.- ..|. .| .......+.+......+.+|+.+++.+.++. .-.
T Consensus 689 af~kaielarfafp~evv~lee~wg~hl~~~~q-~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s 765 (1636)
T KOG3616|consen 689 AFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TAS 765 (1636)
T ss_pred HHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence 2222222211110 0000 00 0011122334445566667777777666542 233
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH 297 (532)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 297 (532)
..|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|++++|.++-.+.. |....+..|-+-..-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 446666677777777777777765432 24556777777777777777665543 2333445555555566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHH
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 377 (532)
-..|++.+|.+++-.+. .|+ ..|..|-+.|..+..+++..+-.. ..-..+...+..-|...|+...|+
T Consensus 835 dehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHH
Confidence 67777777777664432 233 345667777777777766554321 112334445666677778888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHL 452 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (532)
+.|-+..+ |.+-+..|...+.+++|.++-+. .| ..|..---..+ .++.=--+.|.+++++
T Consensus 903 ~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v~fl--waksiggdaavkllnk 962 (1636)
T KOG3616|consen 903 EHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHVAFL--WAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHHHHH--HHHhhCcHHHHHHHHh
Confidence 77755432 56666777777777777766543 22 22333222233 3333334677777765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00014 Score=68.70 Aligned_cols=402 Identities=14% Similarity=0.089 Sum_probs=228.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHhcCCh
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLL 163 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 163 (532)
++.+..|+++.|+.+|-+..... ++|.+.|..-..++++.|++++|++=-.+-++. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45678899999999999998886 668999999999999999999998877666664 455 45788888888889999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH---HHHHHHHHC---CCCcCHHhHHHHHHHHHcC-------
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW---LIINEMRSK---GFQLNSFVYGKVIGLYRDN------- 230 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~---~~~~~~~~~~~ll~~~~~~------- 230 (532)
++|+.-|.+-.+... .|...++-+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999998877543 45666777777762111110000 011111100 0000111222222222111
Q ss_pred CChHHHHHHHHHHHH--------cC-------CCC----------------------CHHHHHHHHHHHhccCCHHHHHH
Q 009556 231 GMWKKAVGIVEEIRE--------MG-------LSL----------------------DRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
.......+..-.+.. .+ ..| -..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 001111111111000 00 001 01123444555555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHccCCHHHHHHHHH
Q 009556 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT-------IISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~ 346 (532)
.+....+.. -++.-++....+|...|.+.+....-.+..+.|-. ....|+. +..++.+.++++.+...|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 666655542 23444445555566666665555555554443321 1111111 2224444555666666666
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 347 NMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS-MFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
+.......|+. ..+....+++....+...-. .|... -...-...+.+.|++..|...+.+++... +-
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 54433222211 11122222222222222211 11110 01111456778899999999999999876 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
|...|....-+|.+.|.+..|+.=.+..++. .|+ ...|..=..++....++++|.+.|++.++ ..|+..-+..-+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGY 466 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 7889999999999999999999888888775 333 33455555566667889999999999887 447665554444
Q ss_pred HHHHH
Q 009556 505 SALVV 509 (532)
Q Consensus 505 ~a~~~ 509 (532)
+-|..
T Consensus 467 ~rc~~ 471 (539)
T KOG0548|consen 467 RRCVE 471 (539)
T ss_pred HHHHH
Confidence 44444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-05 Score=75.13 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=158.5
Q ss_pred CCCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------
Q 009556 109 HPSSISYASLIE--ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-G-------- 177 (532)
Q Consensus 109 ~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------- 177 (532)
.-|..|-..++. .|..-|+.+.|.+-.+.+.. ..+|..+.+.|.+..+++-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346677777764 46678999999999888874 357999999999999888887666666432 1
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (532)
..++ .+-.-..-.....|.+++|..+|.+.++. ..|-+.|-..|.|++|.++-+.--+.. -..+|..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 1122 22223333446789999999999998764 445567888999999998866433222 2335555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQES-------------------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~-------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 318 (532)
...-+-..+|.+.|++.|++..... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 5566666788888888877642110 011333344444444555666666666655432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 384 (532)
|-++++..|-.|+.++|-++-++ .-|....-.+...|...|++.+|...|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34555666667777777776554 2245566678888888888888888887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.2e-06 Score=70.47 Aligned_cols=139 Identities=8% Similarity=0.080 Sum_probs=95.2
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF-GVAGK--YKEA 446 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A 446 (532)
.++.+++...++...+.+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666665554 4567778888888888888888888888877764 44666777777753 56666 4888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+. ..|+..-.. ++++....+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~-~i~~i~~a~~~ 193 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ-LVESINMAKLL 193 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH-HHHHHHHHHHH
Confidence 8888888876432 6667777888888888888888888888764 344443333 33665555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.0003 Score=62.74 Aligned_cols=309 Identities=12% Similarity=0.124 Sum_probs=174.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS---LIEALASVGRTLEADAIFQEMVCFGFNPKLRF-YNILLRG 156 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~ 156 (532)
-.+-+.+..+|++..|+.-|....+. |+..|.+ -...|...|+-..|+.=+.+.++. +||-.. -..-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 45666777788888888888887754 3333433 345677778877787777777764 465322 1223345
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+.+.|.++.|..=|+.+.+... +..+ ...++.+.-..++-+ .....+..+...|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhH
Confidence 6678888888888887776532 1111 111111111111111 112233344556666667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
+.....+++.. +-|...+..-..+|...|++..|+.-++...+..- -+..++-.+-..+...|+.+.++...++.++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 76666666653 33566666666667777777766665555443322 24444445556666667777766666665543
Q ss_pred CCCCCHHH----HHHH---------HHHHHccCCHHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCCcccHHHHH
Q 009556 317 GFYPDPKI----FITI---------ISCLGELGKWDVIKKNFENMKDRGHGKIGA---IYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 317 ~~~~~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 380 (532)
.||... |..+ +......++|.++....+...+........ .+..+-.++...+++.+|++..
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 444321 1111 111234455666666666666554332222 2334555666677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
.++.... +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 331 ~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7776542 223666666667777777777777777777665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-05 Score=80.80 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=114.8
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCF-GFNP---KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY 185 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 185 (532)
.+...|-..|......++.++|+++.++++.. ++.. -...|.++++.-...|.-+...++|+++.+. .-.-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 33455666666666666677777766666542 1111 1234555555555556666666666666653 1122356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGK 264 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 264 (532)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++++.-.. -........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66666666666666666666666543 2234455666666666666666666666666554111 012223333344455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 320 (532)
.|+.+.+..+|+.......+ -...|+..|..-.+.|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666665544221 34456666666666666666666666666655544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00047 Score=69.98 Aligned_cols=261 Identities=13% Similarity=0.150 Sum_probs=144.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
.|+..-+..++++...+-..+-+++++++.-.+ +..+...-|.++-...+. +..+..+..+++-... .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------
Confidence 344555667899999999999999999987532 122233344444444443 4455666666655433 122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
+...+...+-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 2344455566677777776654 244444444442 344555555444432 34556666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
..+|.+-|-+. .|+..|.-+++...+.|.+++-.+.+.-..++.-.|.+.+ .+|-+|++.++..+..+++
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh--
Confidence 66665544221 2555566666666666666666666655555544444443 5666666666655544433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 381 (532)
.-|+......+.+-|...+.++.|.-++..+ .-|..|...+...|++..|.+.-+
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2355555555666666666666665555432 224444455555555555544433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00033 Score=62.42 Aligned_cols=313 Identities=12% Similarity=0.104 Sum_probs=157.1
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhH-
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVY- 220 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~- 220 (532)
.++.-.--+.+.+...|++..|+.-|....+ .|+..|.++ ...|...|+..-|+.-+.+..+. +||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 3555556677778888888888888888776 344445444 44677788888888888887775 5654322
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (532)
..-...+.+.|.++.|..-|+.+++....... ..+|.+-+....+ .......+..+...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~---------------~~eaqskl~~~~e------~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGL---------------VLEAQSKLALIQE------HWVLVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcch---------------hHHHHHHHHhHHH------HHHHHHHHHHHhcC
Confidence 22234566788888888888888776422111 0011110000000 00011222333444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
|+...|++....+++.. +.|...+..-..+|...|++..|+.-++...+.. ..++...--+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55555555555555432 3344445555555555555555554444444332 122233333344444455555555554
Q ss_pred HHHHHcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHhccCCCCCCHH---HHHHHHHHHHhcCCHH
Q 009556 381 AALKLEGLQPSGSM----FCIL---------ANAYAQQGLCEQTVKVLQLMEPEGIEPNLV---MLNVLINAFGVAGKYK 444 (532)
Q Consensus 381 ~~~~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~ 444 (532)
++-.+. .||... |-.| +......+++.++.+..+...+....-... .+..+-.++...|++.
T Consensus 247 RECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 444432 222211 1100 111233445555555554444432111111 2233344555566666
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 445 EALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+|++.-.+..+. .|| +.++---..+|.-...++.|+.-|+...+
T Consensus 325 eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666543 333 45555555666666666666666666655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-05 Score=79.69 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=100.8
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009556 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREM-GLS---LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNS 292 (532)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 292 (532)
...|-..+......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 344555555555556666666665555432 110 01234555555555555555556666655543 111234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcC
Q 009556 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG-KIGAIYAILVDIYGQYG 371 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 371 (532)
|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-.. .......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 555666666666666666666543 2234455555555555555555555555555443211 12333344444444555
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCC
Q 009556 372 RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 424 (532)
+.+.+..+|+...... +-....|+..++.-.++|+.+.++.+|++....++.
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5555555555544432 122334555555555555555555555555544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0003 Score=71.33 Aligned_cols=396 Identities=12% Similarity=0.023 Sum_probs=197.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNILLR 155 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~ 155 (532)
..|..|-..|+...+...|.+.|+..-+.+ ..+...+......+++..+++.|..+.-...+.. +.-. .-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 346666666666667777777777766654 4455666667777777777777776632222211 1111 11222333
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHH--HHHHHHcCCCh
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK--VIGLYRDNGMW 233 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~~~~ 233 (532)
.|.+.++...|+.-|+...+..+ .|...|..+..+|.+.|++..|.++|.+.... .|+ .+|.. ..-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhH
Confidence 45566667777777776666443 45667778888888888888888888776654 222 22222 22234567777
Q ss_pred HHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHHHc
Q 009556 234 KKAVGIVEEIREMG------LSLDRQIYNSIIDTFGKYGELVEALEVFEKM-------QQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 234 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~p~~~~~~~li~~~~~~ 300 (532)
+++...+..+.... ...-..++-.+...+.-.|-...|.+++++- ......-+...|-.+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 77777777665421 0001112222222222222222222222222 1111111222222222211110
Q ss_pred CCHH------HHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHHHHc----cC----CHHHHHHHH
Q 009556 301 GDVA------KALELF-TQMQEQGFYP--------------------DPKIFITIISCLGE----LG----KWDVIKKNF 345 (532)
Q Consensus 301 g~~~------~A~~~~-~~m~~~~~~~--------------------~~~~~~~ll~~~~~----~~----~~~~a~~~~ 345 (532)
-..+ -.+.++ .+....+..| +..++..+...|.+ .+ +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 000001 0111111111 11222222222211 11 122444455
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
...++.. ..+..+|+.|.-. ...|.+.-|...|-.-.... +....+|..+.-.+.+..+++-|...|...+... +.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-ch
Confidence 5544432 2344555555443 44455555555554443332 3345566666667777788888888888887653 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCcChHHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMK----DIGISPDLVTYSTLMKAFIRAKKFHKVPE 483 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 483 (532)
|...|-.........|+.-++..+|..-- ..|--|+..-|-....-....|+.++-+.
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 66666655555667788888888877521 23445666666666566666776555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00015 Score=67.19 Aligned_cols=127 Identities=14% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG-MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
.+-..+...+..++|+.+..++++.... +..+|+.--.++...| ++++++..++++.+.+. .+..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 3333444444555555555555443111 2223333333333333 34445555544444331 2333344333333333
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 266 GEL--VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 266 g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
|+. ++++.+++++.+...+ +..+|+.....+...|+++++++.++++.+.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 331 3344444444433221 4444444444444444444444444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=75.97 Aligned_cols=250 Identities=13% Similarity=0.056 Sum_probs=136.6
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL 307 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 307 (532)
.+.|++.+|.-.|+..++.+ +-+...|-.|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45555666666666555553 224555655655555566555666666555554222 3444455555566666666666
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHHHccCCHHHHHHHHHHHH-hcCCCCCHhHHHHHHHHHHhcCCcccHHH
Q 009556 308 ELFTQMQEQGFY-----P---DPKIFITIISCLGELGKWDVIKKNFENMK-DRGHGKIGAIYAILVDIYGQYGRFRDPEE 378 (532)
Q Consensus 308 ~~~~~m~~~~~~-----~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 378 (532)
..++.-.....+ + +...-.. ..+.....+....++|-++. ..+...|+.+...|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 666555432100 0 0000000 11112222333444444433 33334666677777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 009556 379 CIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKD-- 455 (532)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 455 (532)
.|+...... +-|..+||.|...++...+.++|+..|.+..+. .|+- .....|.-.|...|.+++|.+.|-..+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 777776643 335666777777777777777777777777664 4443 2344455667777777777776655432
Q ss_pred -C------CCCCCHHHHHHHHHHHHhcCCcChHHHH
Q 009556 456 -I------GISPDLVTYSTLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 456 -~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 484 (532)
. +..++...|.+|=.++...++.+-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1223445666666666666666645444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-05 Score=69.80 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=128.2
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--- 147 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--- 147 (532)
......+-.+...+.+.|++++|+..|+++.... +.+. .++..+..++...|++++|...++++.+... .+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 4455667778888999999999999999988763 2222 4677888999999999999999999987541 122
Q ss_pred HhHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 148 RFYNILLRGFLKK--------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 148 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
.++..+..++.+. |+.+.|.+.|+.+.+..+ -+...+..+..... ... .. ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 2455555556554 678889999988877532 12222222211110 000 00 011
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|+.++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678888999999999999887632 223567888899999999999999988888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00015 Score=62.38 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=159.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|| |+-+.-.|++..++..-...... +.++..-..+.++|...|++..... ++.... .|.......+...
T Consensus 10 d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~ 81 (299)
T KOG3081|consen 10 DELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEY 81 (299)
T ss_pred hhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHH
Confidence 34444 55556668888888766655433 2445555566677877777654332 332222 3444444444333
Q ss_pred HHhcCChhHH-HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 157 FLKKGLLGLG-SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 157 ~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
...-++.+.- .++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+.
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~ 155 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDL 155 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHH
Confidence 3334443333 3344455544333343344444557888999999988877622 23333333455667888889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFG----KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
|.+.++.|.+.. +..+.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-+..++...|++++|..+++
T Consensus 156 A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 156 AEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 999999988753 5556665555554 345788999999999875 56788888888888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhc
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDV-IKKNFENMKDR 351 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~ 351 (532)
....... -++.+...++......|...+ ..+.+.++...
T Consensus 232 eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 232 EALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9887643 356777777766666665433 34455555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0002 Score=70.21 Aligned_cols=233 Identities=13% Similarity=0.053 Sum_probs=174.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK 264 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (532)
-..+...+...|-..+|..+|+++.. +..++.+|...|+..+|..+..+..+. +|+...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 34567788889999999999987643 566788899999999999998888774 6888899999888877
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN 344 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 344 (532)
..-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. +.-..+|-....+..+.+++..+.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77889999998876442 11222223345789999999998876643 23456777777778889999999999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC-C
Q 009556 345 FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-I 423 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 423 (532)
|....... +.+...||.+-.+|.+.++..+|...+.+..+.+. -+...|...+....+.|.+++|.+.++++.... .
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 98887664 55678899999999999999999999999988874 344456667777788999999999988775431 0
Q ss_pred CCCHHHHHHHHHHHH
Q 009556 424 EPNLVMLNVLINAFG 438 (532)
Q Consensus 424 ~p~~~~~~~li~~~~ 438 (532)
..|......++....
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 114444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-05 Score=69.29 Aligned_cols=187 Identities=11% Similarity=-0.024 Sum_probs=128.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH--HH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ--ET 184 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~ 184 (532)
.....+..+...+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677788888899999999999999988754 2222 46677888999999999999999999875432111 14
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009556 185 YEILLDYHVNA--------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (532)
Q Consensus 185 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (532)
+..+...+.+. |+.++|.+.|+.+.+.... +...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 54555555544 6788888888888776322 2222222111100 00 0000 1112
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESI--RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.+...|.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678999999999999999887532 223568889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=68.01 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 116 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
..+-..+.-.|+-+....+........ +.|....+..+....+.|++..|...|.+...... +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 555566666777777766666654322 44556666678888888888888888888776544 6777888888888888
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 196 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888877765322 55667777777788888888888888777664 236666667777778888888888876
Q ss_pred HHHHh
Q 009556 276 EKMQQ 280 (532)
Q Consensus 276 ~~m~~ 280 (532)
..-..
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-05 Score=64.92 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
.+..+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+++.|..-|.+..+... -+....+.+.-.+.-
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHH
Confidence 3334444444555555555554444333 34444555555555555555555544444444322 233334444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
.|+++.|..++......+.. |...-..+.......|++++|.++.
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 45555555554444443221 3344444444444445554444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00031 Score=72.70 Aligned_cols=170 Identities=13% Similarity=0.023 Sum_probs=110.8
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..+...|..|+..+...+++++|+++.+...+. .|+.. .|-.+.-.+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 346678899999999999999999999977765 45543 344444466677776655554 22
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
+.......++.....+...|.+.+ -+...+-.+..+|-+.|+.++|..+|+++.+... -|..+.+.+...|+.. +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 222223333333333333444421 3444677777888888888888888888877762 2677777777777777 8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
+++|.+++.+.... |...+++.++.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888777776654 44455666666666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00022 Score=72.98 Aligned_cols=182 Identities=10% Similarity=0.052 Sum_probs=116.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.++..+-.|.....+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++...... -+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 4456777777777778888888888888877654 33456667777777788888888888877776543 455566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+-...|+..+ +++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 777777888888888888877632 2246777777777778888888888887777653 22334444333 233
Q ss_pred HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc
Q 009556 269 VEALEVFEKMQQE----SIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 269 ~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 300 (532)
..-...++.+.-. |....+.+...+|..|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3344455554432 2222344455555555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00018 Score=74.39 Aligned_cols=170 Identities=16% Similarity=0.086 Sum_probs=122.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 356688999999999999999999999777653 23334444444467777775555444 333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 009556 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (532)
+......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3344444444444444445443 2255678889999999999999999999999987 55899999999999999 999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
+|.+++.+.... +...+++..+.++|.++.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999998887653 44555677777777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-05 Score=67.23 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCC--hHHH
Q 009556 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH-VNAGR--LDDT 201 (532)
Q Consensus 125 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 201 (532)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555544 45556666666666666666666666666665433 3445555555542 44454 3666
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
.+++++..+.+.. +..++..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666655333 45555556666666666666666666666553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00078 Score=68.49 Aligned_cols=130 Identities=8% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCcCHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG-ICRNQETYEILLDYH 192 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~ 192 (532)
.|..|...|+...+..+|.+.|+...+.. ..|...+..+...|++..+++.|..+.-..-+.. ...-...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555545555555555555443 2344445555555555555555555422211110 001111222233344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
.+.++...|..-|+...+..++ |...|..+..+|...|.+..|.++|.++..
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4455555555555555443222 445555555555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-05 Score=63.50 Aligned_cols=95 Identities=12% Similarity=-0.054 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 4455666666666666666666666666666554 4455666666666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 009556 160 KGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~ 176 (532)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00025 Score=72.59 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (532)
..+...+..|.....+.|.+++|..+++...+.. |.+......+...+.+.+++++|...+++..... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3456667777777777777777777777777654 4445566667777777777777777777777654 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (532)
..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+. ..|-..-|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHH
Confidence 777777788888888888877632 334677777777888888888888888877654 223334444433 223
Q ss_pred ChHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHhhhhhc
Q 009556 479 HKVPEIYKQMESSGCTPDRK-ARQILQSALVVLEQRRCK 516 (532)
Q Consensus 479 ~~a~~~~~~m~~~g~~p~~~-t~~~l~~a~~~~~~~~~~ 516 (532)
..-..+++++.-.+...+.. ..-.+-+++...++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 33445555554333322222 122334444555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6e-05 Score=61.21 Aligned_cols=108 Identities=11% Similarity=-0.109 Sum_probs=78.5
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
.+|++..+. .|+ .+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+......
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 233 34556677778888888888888887765 4567777888888888888888888888887754
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
. .+...+..+..++...|++++|...|+...+.
T Consensus 89 p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 56677777777888888888888888887765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00082 Score=57.98 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=130.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 009556 119 IEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198 (532)
Q Consensus 119 i~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 198 (532)
++-+.-.|.+..++..-...... +.+...-..+-++|...|...... .+++... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 44555566666666554443322 133444444556666666654332 2233222 23333333333333334443
Q ss_pred HHHH-HHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 199 DDTW-LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 199 ~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
++-. ++.+.+......-+......-...|+..+++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 344444444333333333344456777777777777665521 222222223345566677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 009556 278 MQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353 (532)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (532)
|.+. -+..|.+.|..++.+ .+....|.-+|++|-++ ..|+..+.+....++...+++++|..+++.......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 7764 244555555555443 34567777777777653 466777777777777777777777777777776653
Q ss_pred CCCHhHHHHHHHHHHhcCCccc-HHHHHHHHHH
Q 009556 354 GKIGAIYAILVDIYGQYGRFRD-PEECIAALKL 385 (532)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~ 385 (532)
.++.+...++-.-...|...+ ..+.+.+++.
T Consensus 239 -~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 -KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 334444444444444444333 3334444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=51.29 Aligned_cols=33 Identities=36% Similarity=0.695 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS 111 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 111 (532)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.6e-05 Score=61.43 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334555666667777777777777766543 4456667777777777777777777777776653 33555666667777
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
...|++++|.+.++...+ +.|+...+..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 125 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEYSELK 125 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchHHHHH
Confidence 777777777777777776 445555444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.8e-05 Score=59.79 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...++...+.+. .+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 34444444555555555555555555433 33444555555555555555555555555544332 33444444555555
Q ss_pred hcCChHHHHHHHHHHHHC
Q 009556 194 NAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~ 211 (532)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.011 Score=60.01 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
.|.|+.++|..+++.....+. .|..|...+-..|...++.++|..+|++.... .|+......+..+|.|.+++.+-.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666655555544432 24555555555555566666666666655543 244555555555555555443322
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHcCCChHHH
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGR----------LDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
++=-++-+. .+-+...+=++++.+.+.-. ..-|.+.++.+.+.+ -.-+..-...-+..+...|++++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 221122111 11233333333333332211 112333333333332 111122222222334455556666
Q ss_pred HHHH-HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 009556 237 VGIV-EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 282 (532)
.+++ ....+.-...+...-+.-++.+...+++.+..++-.++..+|
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6665 233333233344444455556666666666666666665554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0012 Score=62.13 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=113.8
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..|+...+...+.+......-..+-.++.+-.+ +......-.........|++++|+..++.+...- +.|+..+..
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~ 345 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLEL 345 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHH
Confidence 345555555555544433333333333322222 1122223333334446677788888888776543 445566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
....+.+.++..+|.+.++.+.... |+ ...+-.+..+|.+.|++.+|+.++++..... +-|+..|..|..+|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence 7777788888888888888877653 33 5566677777888888888888887776653 337777888888888887
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
+..++..-..+ .|.-.|+++.|...+....+.
T Consensus 423 ~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 77666554433 344567777777777766654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0023 Score=54.95 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 265 YGELVEALEVFEKMQQE---S-IRPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34566777776666532 2 333432 2344444555666777777777776654 2222222222222234456677
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|.++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777776655 455555555555555566666666666665554 34566677777777777777777777777666
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 009556 420 PEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDI 456 (532)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 456 (532)
-.. +.+.-.+..+...+...| +.+-|.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 442 233444444444443333 345566666666654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.4e-06 Score=48.64 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP 110 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (532)
.+||.+|++|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0015 Score=61.50 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=109.1
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 009556 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GSMFCILANAYAQQGLCEQ 410 (532)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 410 (532)
+...|+.+.|+..++.++... |.++..+....+.+.+.++.++|.+.++.+.... |+ ...+-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 445677888888888876653 5667777777888888888888888888887653 33 5556667788888888888
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 411 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
|..+++...... +-|...|..|.++|...|+..+|..-.. ..+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 888888776653 5677888888888888888777764333 345557888888888877776
Q ss_pred CC--CCCCHHHHHHHHHHHHH
Q 009556 491 SG--CTPDRKARQILQSALVV 509 (532)
Q Consensus 491 ~g--~~p~~~t~~~l~~a~~~ 509 (532)
.. -.|+..-+...+..+..
T Consensus 454 ~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 454 QVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred hccCCcHHHHHHHHHHHHHHH
Confidence 42 23444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.7e-06 Score=48.89 Aligned_cols=33 Identities=39% Similarity=0.652 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 461 (532)
+||+++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665555
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0041 Score=53.40 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHc---C-CCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHHcCCChHHH
Q 009556 163 LGLGSRLLMVMEDM---G-ICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS-FVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 163 ~~~A~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a 236 (532)
.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++.+.+.= |.+ .+-..-...+-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 34444444444321 2 334443 34445556666777777777777776652 322 2222222234456778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.++++.+++.+ +.|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888887765 456666666666666667766777777766664 4458888888888888888888888888887754
Q ss_pred CCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhcC
Q 009556 317 GFYPDPKIFITIISCLGELG---KWDVIKKNFENMKDRG 352 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 352 (532)
. +.++..+..+...+.-.| +.+.+.+++.+..+..
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 2 234444555555443333 4566677777776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=68.71 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=65.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
+++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444566666666666666542 33 22335555555555566666666555432 334445555555555666
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
+.+.|+++.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666655321 233366666666666666666665555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.7e-06 Score=47.83 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (532)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355556666666666666666666665555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.024 Score=57.55 Aligned_cols=398 Identities=15% Similarity=0.148 Sum_probs=233.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA--LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
.....+++.+|++...++.++ .||.. |..++.+ +.+.|+.++|..+++.....+. .|..|...+-..|.+.|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 445779999999999998877 45543 4445554 4588999999999988876653 4889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC-C---------h
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG-M---------W 233 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~---------~ 233 (532)
++|..+|++.... .|+......+..+|.+.+.+.+-.+.--+|.+. ++-+.+.+=++++.....- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999875 366777777888888888876555444444432 2224555545555444321 1 2
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMG-LSLDRQIYNSIIDTFGKYGELVEALEVFE-KMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 234 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
.-|.+.++.+.+.+ -.-+..-.-.-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34556666666554 22222222223344567889999999994 44444333344555566778888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----------------cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGE----------------LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---YGR 372 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~ 372 (532)
++...|.. | |...++.+.+ .+..+...+...+..... ....|-+-+.++.+ -|+
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCC
Confidence 99987633 2 3333332211 112333333333333221 12223333444443 466
Q ss_pred cccHHHHHHHHHHcCCCC----CHHHH---------HHHHHHHHhc------------------------CC-----HHH
Q 009556 373 FRDPEECIAALKLEGLQP----SGSMF---------CILANAYAQQ------------------------GL-----CEQ 410 (532)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~----~~~~~---------~~li~~~~~~------------------------g~-----~~~ 410 (532)
.+++...|- .+-|-.| |...| ..++..+... |. .+.
T Consensus 324 ~ee~~~~y~--~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYF--KKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHH--HHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 666544432 2333344 22222 1222222211 11 111
Q ss_pred HHHHHHHhc---cCC------CCCCH---------HHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 411 TVKVLQLME---PEG------IEPNL---------VMLNVLINAFGVAGKYKE---ALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 411 A~~~~~~m~---~~~------~~p~~---------~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
-..++++.. +.| +-|.. -+-+.|++.|.+.++... |+-+++.-.... +-|..+--.++
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 222222111 111 12222 134678888888887764 333344333321 22455556788
Q ss_pred HHHHhcCCcChHHHHHHHHHhCCCCCCHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 500 (532)
+.|.-.|-+..|.++|+.|--..+.-|...+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchH
Confidence 9999999999999999988765565554433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00037 Score=65.89 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
..|+..+...++++.|.++|+++.+.. |+ ....+.+.+...++-.+|.+++.+..+.. +.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666777777777776653 22 33445566666666667777776666543 33555555556667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 266 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
++++.|+++.+++.+... -+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777776422 144577777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.5e-06 Score=45.98 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF 108 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 108 (532)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00074 Score=55.03 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNIL 153 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~l 153 (532)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 3667777776677766653 222 122333445666677777777777777665422221 223345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
...+...|++++|+..++...... .....+....+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666667777766665533221 2334455566666666666666666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00023 Score=67.61 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=102.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHH
Q 009556 107 GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184 (532)
Q Consensus 107 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 184 (532)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34667777888888888888889999988888754 2223345667999999999999999999999888999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
+|.||+.+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988777777778877777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00081 Score=54.81 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
...+...|++++|+..++..... ......+......|...|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444444444444332221 1122233334444444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=52.72 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGF-HPSSISYASLIEALASVG--------RTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677888888888888888888 888888888888877653 2334566666676666677777777
Q ss_pred HHHHHHHh
Q 009556 152 ILLRGFLK 159 (532)
Q Consensus 152 ~li~~~~~ 159 (532)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0002 Score=67.95 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR--GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM 394 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 394 (532)
+.+.+...+..++..+....+.+.+..++-+.... ....-+.+..++|+.|.+.|..+.+.++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666666777776666777777776666544 1222233445666777777766777766666666666677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (532)
+|.|++.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777666666665555444555554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00034 Score=51.96 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556666777788888888887776653 3344566667777777777777877777776654 3344566666677777
Q ss_pred cCChhHHHHHHHHHHH
Q 009556 160 KGLLGLGSRLLMVMED 175 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~ 175 (532)
.|+.+.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.029 Score=55.35 Aligned_cols=350 Identities=13% Similarity=0.116 Sum_probs=187.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH----------HHHHhcCChhHHHHHHHHHHHcCC
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL----------RGFLKKGLLGLGSRLLMVMEDMGI 178 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li----------~~~~~~g~~~~A~~~~~~m~~~~~ 178 (532)
.|.+..|..+.......-.++-|...|-+.... +.+....-|- ..-+--|++++|.++|-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578888988888877777778887777665432 1111111111 11122488888888887776632
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc----CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 179 CRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL----NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 179 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
..+..+.+.|++-...++++. .|-.. -...++.+...++....|++|.+.|......
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 245566667777666655543 11111 2356777777777777777777777654321
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
...+.++.+..++++-+.+-..+.+ +....-.+...+.+.|.-++|.+.+-+-- .| ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHH
Confidence 2245555555555555555555443 44445566677777777777776654321 11 234556666
Q ss_pred cCCHHHHHHHHHHHHhcCCC-----------CCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc----CCCCCHH----HH
Q 009556 335 LGKWDVIKKNFENMKDRGHG-----------KIGAIYAILVDIYGQYGRFRDPEECIAALKLE----GLQPSGS----MF 395 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~----~~ 395 (532)
.++|.+|.++-+...-..+. .+.. ...-|..+.+.|++-+|-+++.+|.+. +.++-.. ..
T Consensus 891 LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL 969 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVL 969 (1189)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHH
Confidence 66666666554432110000 0000 112345566677777777777666432 2222111 11
Q ss_pred HHHH-HH----------HHhcCCHHHHHHHHHHhccC---CC----C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 396 CILA-NA----------YAQQGLCEQTVKVLQLMEPE---GI----E--PNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 396 ~~li-~~----------~~~~g~~~~A~~~~~~m~~~---~~----~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.+++ .- --+.|..++|..+++.-... .+ - .....|-.|.+-....|.++.|.+.--.+.+
T Consensus 970 ~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 970 GALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 1111 11 11235555555544432211 00 0 1122333444445567888888775444433
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 456 I-GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 456 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
. .+-|....|..|.-+.+....+...-+.|-++....--|+.
T Consensus 1050 YEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a 1092 (1189)
T KOG2041|consen 1050 YEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA 1092 (1189)
T ss_pred HhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH
Confidence 2 35566777877777777777777777777777654444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.036 Score=54.67 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=68.9
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH----------HHHHhcCCHHHHHHHHHHHHHCC
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI----------EALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li----------~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
..|.+..|..+.......-.++.|...|-+...- +.......+- ..-+--|++++|.++|-++-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 4577888988888777778888888877665432 2221111111 12223588999999998877543
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR----NQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
..|..+.+.||+-...++++. -|-.. -...|+.+...+.....+++|.+.|..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555666666555554432 11111 123556666666665566666555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.8e-05 Score=44.01 Aligned_cols=29 Identities=34% Similarity=0.654 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00042 Score=51.38 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHHhcCC--------hhHHHHHHHHHHHcCCCcCHHHHH
Q 009556 116 ASLIEALASVGRTLEADAIFQEMVCFGF-NPKLRFYNILLRGFLKKGL--------LGLGSRLLMVMEDMGICRNQETYE 186 (532)
Q Consensus 116 ~~li~~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~~~ 186 (532)
...|..+...+++...-.+|+.+++.|+ -|++.+|+.++.+.++..- +-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777888888888888888888 7888888888888776432 223445555555555555555555
Q ss_pred HHHHHHH
Q 009556 187 ILLDYHV 193 (532)
Q Consensus 187 ~li~~~~ 193 (532)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0022 Score=50.15 Aligned_cols=97 Identities=16% Similarity=0.022 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChHhHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFN--PKLRFYNI 152 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~--~~~~~~~~ 152 (532)
++-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|++++|.+.|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34556666777788888888887776652 22 345556777777777777777777777654211 12345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+..++.+.|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667777777777777777776653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.036 Score=49.40 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=43.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISY---ASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
.....+.+.|++++|++.|+++.... +-+.... -.++.++.+.+++++|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34555567899999999999988763 2223332 345677788899999999998888753
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00096 Score=49.38 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
+..+...+...|++++|...++...+.. +.+...+..+...+...|+++.|.+.|+....... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4445556666677777777777666543 23335555666666666666666666666655432 233455556666666
Q ss_pred cCChHHHHHHHHHHHH
Q 009556 195 AGRLDDTWLIINEMRS 210 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~ 210 (532)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=61.85 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=75.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
-...+...|++++|++.|+++.+.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3455677899999999999988875 5567788888888889999999999999888765 4567778888888888899
Q ss_pred hhHHHHHHHHHHHcC
Q 009556 163 LGLGSRLLMVMEDMG 177 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~ 177 (532)
+++|...|++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888888754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=55.44 Aligned_cols=95 Identities=23% Similarity=0.366 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHH
Q 009556 391 SGSMFCILANAYAQQ-----GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----------------AGKYKEALSV 449 (532)
Q Consensus 391 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----------------~g~~~~A~~~ 449 (532)
+..+|..+++.|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444455555554432 4555555556666666666666666666665433 1235668899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 450 YHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
+++|.+.|+.||..++..|+..+.+.+ .+.+-+.+|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s---~p~~K~~rm 161 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS---HPMKKYRRM 161 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 999999999999999999999985544 455555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0032 Score=53.04 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
....+..+...+.+.|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777888889999999999999886532222 4578888889999999999999999988754 3456667777
Q ss_pred HHHHHhcCChhHHHH
Q 009556 154 LRGFLKKGLLGLGSR 168 (532)
Q Consensus 154 i~~~~~~g~~~~A~~ 168 (532)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777877777555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=52.78 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFH-PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|.++++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777788877777766421 1334455567777777777777777776 3222 1223444455677777777777777
Q ss_pred HHHH
Q 009556 169 LLMV 172 (532)
Q Consensus 169 ~~~~ 172 (532)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.002 Score=61.17 Aligned_cols=89 Identities=9% Similarity=-0.136 Sum_probs=50.1
Q ss_pred HHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 009556 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYK 444 (532)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (532)
..+...|++++|++.|+++.+.+ +.+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666665543 2244455555556666666666666666655542 234455555555666666666
Q ss_pred HHHHHHHHHHH
Q 009556 445 EALSVYHLMKD 455 (532)
Q Consensus 445 ~A~~~~~~m~~ 455 (532)
+|...|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=59.55 Aligned_cols=131 Identities=10% Similarity=0.111 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
..|-.+++..-+.+..+.|..+|.+..+.+ ..+...|......-. ..++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776442 223333433333322 245555577777777654 34566666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRN---QETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654 2122 236666666666666666666666666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=51.44 Aligned_cols=92 Identities=10% Similarity=-0.082 Sum_probs=67.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.+...+...|++++|..+|+.+...+ +-+..-|-.|.-++-..|++++|++.|....... +.|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 34445567788888888888877664 4455666777777777888888888888877766 466777777778888888
Q ss_pred ChhHHHHHHHHHHH
Q 009556 162 LLGLGSRLLMVMED 175 (532)
Q Consensus 162 ~~~~A~~~~~~m~~ 175 (532)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888887776665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.12 Score=51.68 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=181.3
Q ss_pred HcCCCCCHhHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh---hHHHHHHHHHHHc
Q 009556 105 ALGFHPSSISYA-----SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDM 176 (532)
Q Consensus 105 ~~~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~ 176 (532)
..|++.+..-|. .+|.-+...+.+..|+++-..+...-... ..+|.....-+.+..+. +.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555544443 35666667778888888777765321111 56666666666665322 2222222222221
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ----LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR 252 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (532)
. ....+|..+.......|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+... .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 34456777777777788888887776542221100 01222333444455555555555555544432 111
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH----HCCCCCCHHHHH
Q 009556 253 QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT--QMQ----EQGFYPDPKIFI 326 (532)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~~~~~~~~~~~ 326 (532)
..+... ..+...|..+|.+..+.. |.. .+-..| ..++-..++.-|. ... ..|..|+..
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk--- 642 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK--- 642 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---
Confidence 111111 123345555555544321 111 111122 2222222222111 100 113333332
Q ss_pred HHHHHHHccCCHH---HH-------HHHHHHHH-hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHH
Q 009556 327 TIISCLGELGKWD---VI-------KKNFENMK-DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (532)
Q Consensus 327 ~ll~~~~~~~~~~---~a-------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (532)
.....+.+..... ++ .++.+.+. +.+......+.+--+.-+...|+..+|.++-.+++ .||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 2333344333211 11 11122221 12323344455556666777899999988877765 6788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
-.-+.+++..+++++-+++-+.+.. ..-|.....+|.+.|+.++|.+++-+.... .-...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHh
Confidence 8889999999999988887776652 345777889999999999999988765431 1466778888
Q ss_pred CCcChHHHHH
Q 009556 476 KKFHKVPEIY 485 (532)
Q Consensus 476 g~~~~a~~~~ 485 (532)
|++.+|.++-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 8888877654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0052 Score=47.95 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cCHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFN--PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC--RNQETYEILL 189 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li 189 (532)
++..+...+.+.|++++|.+.|..+.+.... .....+..+...+.+.|+++.|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666667777777777666653210 11234455666666666666666666666553211 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 009556 190 DYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..+.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=53.20 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 109 HPSSISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
..+-.+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3456666666666653 36667777777888888888888888888887754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0019 Score=56.98 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=59.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHH
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (532)
+.+.++|++|++.|.+.++.. +.|.+-|..-..+|++.|.++.|++-.+..+... +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455666777777777766653 4556666666667777777777766666666543 22345666666666666666666
Q ss_pred HHHHHHHHHcCCCcCHHHHH
Q 009556 167 SRLLMVMEDMGICRNQETYE 186 (532)
Q Consensus 167 ~~~~~~m~~~~~~~~~~~~~ 186 (532)
.+.|++..+ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666655 345544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0032 Score=57.59 Aligned_cols=131 Identities=8% Similarity=0.061 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK-KGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+..+|......-.+ .++.+.|.++|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777767767777777777776433 2233444433333222 45555577777776654 33456666777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCH---HhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNS---FVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
+.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776554 22111 25555555555555555555555555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0053 Score=51.50 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..++...+.. +.....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45567777888888899999999999887653222 23478888888889999999999998888653 3344556666
Q ss_pred HHHHH-------hcCChhHHHHHHH
Q 009556 154 LRGFL-------KKGLLGLGSRLLM 171 (532)
Q Consensus 154 i~~~~-------~~g~~~~A~~~~~ 171 (532)
...+. +.|+++.|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 66665 5566554444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=51.45 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHH
Q 009556 406 GLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 484 (532)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444455544444443210 1222333344455555555555555544 11111 1112222334444555555555554
Q ss_pred HH
Q 009556 485 YK 486 (532)
Q Consensus 485 ~~ 486 (532)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0079 Score=50.65 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPS--GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 360 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33344444444444444444444443221111 2334444555555555555555555554431 12333344444444
Q ss_pred HhcCC
Q 009556 438 GVAGK 442 (532)
Q Consensus 438 ~~~g~ 442 (532)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.018 Score=52.99 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH---PS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
...|+.....|-..|++++|.+.|.+....... +. ...|......+ +..++++|.+.+++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~------------ 101 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI------------ 101 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH------------
Confidence 356788888888889999999988876433111 11 12233333333 3336666666666554
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----CCCCc-CHHhHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRS----KGFQL-NSFVYGKVIG 225 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~ 225 (532)
..|...|++..|-+++..+- ..|... |++++|.+.|++..+ .|..- -...+..+..
T Consensus 102 ---~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 102 ---EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp ---HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 44555555555544443332 233333 455555555554422 12100 1233445555
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSL-----DRQ-IYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
.+.+.|++++|.++|+++....... +.. .+-..+-.+...||...|.+.|++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666666666665432211 111 1222222444456777777777766543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0067 Score=50.87 Aligned_cols=114 Identities=9% Similarity=-0.028 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHhcCChhHHHHH
Q 009556 93 IDEAMALLAQMQ-ALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLGSRL 169 (532)
Q Consensus 93 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 169 (532)
+..+...+..+. ..+.......|..+...+...|++++|...|+........+ ...++..+...+...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444443 22222234567777888888999999999999987653222 235788888999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 009556 170 LMVMEDMGICRNQETYEILLDYHV-------NAGRLDDTWLIINE 207 (532)
Q Consensus 170 ~~~m~~~~~~~~~~~~~~li~~~~-------~~~~~~~a~~~~~~ 207 (532)
++....... ....++..+...+. +.|+++.|...+++
T Consensus 95 ~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 998887532 33455666666666 66666655544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.09 Score=46.89 Aligned_cols=74 Identities=9% Similarity=-0.060 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY---NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
.....+...|++++|.+.|+.+...- +-+.... -.++.++.+.+++++|...+++..+..+......|...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34444556677777777777776643 1112222 23456666777777777777777665433223333333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.038 Score=50.79 Aligned_cols=113 Identities=19% Similarity=0.333 Sum_probs=58.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC-CChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHH
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN-GMWKKAVGIVEEIREM----GLS-LDRQIYNSIIDT 261 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~ 261 (532)
.+..|...|++..|-+++.++ ...|... |++++|.+.|++..+. +.. .-..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344556666666665555443 3345555 7788888777776542 100 012344555666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 262 FGKYGELVEALEVFEKMQQESIR-----PDIV-TWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
+.+.|++++|.++|++....... .+.. .+-..+-++...||+..|.+.+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67777777777777766553211 1111 122233345556677777777766653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00095 Score=46.08 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
.+.|++++|+++|+++.... +.+...+..+..+|.+.|++++|.++++.+.... |+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHH
Confidence 45677888888888877664 4466677777778888888888888887777653 4433333
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0067 Score=48.75 Aligned_cols=95 Identities=8% Similarity=-0.021 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
.-.+...+...|++++|..+|+.+.... +.+..-|-.|.-++-..|++++|+..|.......+ -|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344555566777777777777776654 34555666666666677777777777777766553 455666666667777
Q ss_pred cCChHHHHHHHHHHHHC
Q 009556 195 AGRLDDTWLIINEMRSK 211 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~ 211 (532)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777776665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.017 Score=57.58 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 33455555444555566666666666666543 4555666666666666666666666666654 4444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.037 Score=42.84 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=51.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHH
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGF 157 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~ 157 (532)
...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455566777777777777777664333 2344555666667777777777777766532 22 11222223344
Q ss_pred HhcCChhHHHHHHHHHHH
Q 009556 158 LKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~ 175 (532)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 556666666666554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0046 Score=54.65 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=55.1
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (532)
+.+.+++.+|...|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+...... +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666543 2345555556666666666666666655555432 12234566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 009556 447 LSVYHLMKDIGISPDLVTYST 467 (532)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~ 467 (532)
.+.|++..+ +.|+-.+|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666666655 3455444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.033 Score=55.55 Aligned_cols=137 Identities=13% Similarity=0.047 Sum_probs=94.3
Q ss_pred CCCCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc--------CChhHHHHHHHHHH
Q 009556 108 FHPSSISYASLIEALASV-----GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK--------GLLGLGSRLLMVME 174 (532)
Q Consensus 108 ~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 174 (532)
.+.|...|...+++.... ++...|.++|++..+.. +.....|..+..++... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 367788888888775543 23678889999988764 33345555544444322 12334444444433
Q ss_pred Hc-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 175 DM-GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 175 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
.. ..+.+...|..+.-.+...|++++|...+++..... |+...|..+...+...|+.++|.+.+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32 122355677777777777899999999999988875 577888888999999999999999999888764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.1 Score=45.23 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGF--HPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
....+.+.|++.+|++.|+.+..... +-.....-.++.++.+.|+++.|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455678889999999988887621 112345566777888888888888888887765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.098 Score=42.98 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=64.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+..+..+.=|++...+-..+-.+. .|++.--..+..++.+.|+..+|...|++...--+..|....-.+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 344444444444443333222222 345544555666666666666666666666543334455555556666666666
Q ss_pred hhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 163 LGLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+..|...++.+-+.... .++.+...+.+.+...|.+.+|..-|+...+.
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 66666666665543210 12223344445555555555555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.03 Score=49.93 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 009556 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIGISPDLVTY 465 (532)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~ 465 (532)
+-|...|-.|...|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4567778888888888888888888888877653 456666666666655432 3466788888887753 2356666
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 466 STLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777888888888888888888874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0025 Score=43.47 Aligned_cols=57 Identities=25% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
...+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667777777777777777664 345666777777777777777777777777654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0029 Score=43.74 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVC 140 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~ 140 (532)
++..|..+...+.+.|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777777777777777777777777764 445666777777777777 57777777777664
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.05 Score=42.13 Aligned_cols=93 Identities=20% Similarity=0.069 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cCHHHHHHHHHHHH
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC--RNQETYEILLDYHV 193 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~ 193 (532)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++....... -+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34555667778888888888777765443 234555666777777777777777776654211 01122223334556
Q ss_pred hcCChHHHHHHHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRS 210 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~ 210 (532)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66777777766655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0021 Score=44.27 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666665555442 22445555555556666666666665555554
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.13 Score=47.78 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHhcCCHHHHHHHHHHhccC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhc
Q 009556 402 YAQQGLCEQTVKVLQLMEPE---GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTL---MKAFIRA 475 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~ 475 (532)
..+.|++..|.+.+.+.+.. .+.|+...|.....+..+.|+..+|+.--++..+. |......+ ..++...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHH
Confidence 34566666666666666543 23444555555555566666666666665555442 32221111 2233445
Q ss_pred CCcChHHHHHHHHHhC
Q 009556 476 KKFHKVPEIYKQMESS 491 (532)
Q Consensus 476 g~~~~a~~~~~~m~~~ 491 (532)
++|++|.+-+++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0024 Score=43.57 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
..+...|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443 22344445555555555555555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0096 Score=54.82 Aligned_cols=264 Identities=14% Similarity=0.075 Sum_probs=160.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCC-CChHhHHHHHHH
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMV--C--FGFN-PKLRFYNILLRG 156 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~--~--~g~~-~~~~~~~~li~~ 156 (532)
-+|+.|+...-+.+|+...+.| ..|. .+|..|..+|.-.+++++|++.+..=+ . .|-+ -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4799999999999999999987 3343 357777888888999999998764321 1 1100 112222334444
Q ss_pred HHhcCChhHHHHHHHH----HHHcCCC-cCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 009556 157 FLKKGLLGLGSRLLMV----MEDMGIC-RNQETYEILLDYHVNAGR--------------------LDDTWLIINEMR-- 209 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~----m~~~~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~-- 209 (532)
+--.|.+++|.-.-.+ ..+.|-. .....+-.+...|...|+ ++.|.+.|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556667766543222 1222110 112234445566654442 223444443321
Q ss_pred --HCCC-CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-
Q 009556 210 --SKGF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE----MGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQ- 280 (532)
Q Consensus 210 --~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 280 (532)
+.|- -.--..|..|.+.|.-.|+++.|+..++.-+. .|-. .....+..+.+++.-.|+++.|.+.|+.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 01223566666667778899999887765432 2211 2244677788888889999999998876432
Q ss_pred ---CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 281 ---ESI-RPDIVTWNSLIRWHCKAGDVAKALELFTQMQE----QG-FYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 281 ---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.|- .....+.-+|.+.|.-..++++|+.++.+-.. .+ ..-....+.++..++...|..+.|..+.....+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 12345566788888888899999998877432 11 222456778889999999999999887766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.074 Score=47.49 Aligned_cols=101 Identities=9% Similarity=-0.018 Sum_probs=52.4
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCcCHHhH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG---RLDDTWLIINEMRSKGFQLNSFVY 220 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~ 220 (532)
+-|...|-.|...|...|+++.|...|....+... +|...+..+..++.... ...++..+|+++...... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 34555566666666666666666666655555422 34444444444333222 234555566665554222 44444
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555666666666666666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.35 Score=45.13 Aligned_cols=282 Identities=11% Similarity=-0.007 Sum_probs=136.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
.......-..+.+..++.+|+..+....+.. +-+..-|..-...+...+++++|.--.+.-.+.. +-......-.-++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQC 126 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhh
Confidence 3344455566778888999999999988875 4455566666777777788887776655544321 1112233333344
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHhHHHHH-HHHHcCCChH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-QLNSFVYGKVI-GLYRDNGMWK 234 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~ 234 (532)
+...++..+|.+.++.-. .+ ....++..++....... +|.-.++..+- .++...|+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 444444444444443110 00 01111222222211111 12222222222 2334455566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIID--TFGKYGELVEALEVFEKMQQESIRPDIVT-------------WNSLIRWHCK 299 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------------~~~li~~~~~ 299 (532)
+|.++--.+++.+ ....+...++ ++.-.++.+.|...|++....+ |+... |..-.+-..+
T Consensus 187 ~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 187 EAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred hHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 6655555544432 1111222222 2223445555555555554431 22111 1111223456
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccH
Q 009556 300 AGDVAKALELFTQMQEQ---GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 376 (532)
.|++..|.+.+.+.+.. ...|+...|........+.|+.++|+.--+...+.+ +.-...+..-..++...+++++|
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776643 244455556666666667777777776666655443 11112222223334445566666
Q ss_pred HHHHHHHHHc
Q 009556 377 EECIAALKLE 386 (532)
Q Consensus 377 ~~~~~~~~~~ 386 (532)
.+-++...+.
T Consensus 341 V~d~~~a~q~ 350 (486)
T KOG0550|consen 341 VEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHhh
Confidence 6666655443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.35 Score=44.93 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=66.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYA 403 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (532)
+.+..+.-+...|+...|.++-.+. . .|+...|-..+.+|+..+++++-..+... +-++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455556666666666654443 1 45667777777777777777766654332 112355777777777
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (532)
+.|+..+|..+...+. +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777776622 134566777777777776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.16 Score=44.03 Aligned_cols=60 Identities=12% Similarity=-0.029 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.....+...|++.+|.+.|+.+..... +--....-.++.++.+.|+++.|...+++..+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667777777777777775421 111233445666777777777777777776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.18 Score=41.50 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHHH
Q 009556 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL---QPSGSMFCILANAYA 403 (532)
Q Consensus 327 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~ 403 (532)
.+..+..+.|+..+|...|.+...--...|....-.+.++....+++..|...++.+-+.+. .|| +...+.+.+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHH
Confidence 34444444444444444444444333333344444444444444444444444444433221 122 1223344444
Q ss_pred hcCCHHHHHHHHHHhcc
Q 009556 404 QQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~ 420 (532)
..|.+..|+..|+....
T Consensus 172 a~g~~a~Aesafe~a~~ 188 (251)
T COG4700 172 AQGKYADAESAFEVAIS 188 (251)
T ss_pred hcCCchhHHHHHHHHHH
Confidence 44444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.43 Score=45.05 Aligned_cols=423 Identities=12% Similarity=0.103 Sum_probs=236.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-|..+|-.||..|..++.+++..+++++|..- .+.-+.+|..-+.+-...+++.....+|.+.+... .+...|...+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 46778999999999999999999999999853 23345678888888778889999999999988764 4566777777
Q ss_pred HHHHhcCChh------HHHHHHHHHHH-cCCCcC-HHHHHHHHHHHH---hcC------ChHHHHHHHHHHHHCCCCcCH
Q 009556 155 RGFLKKGLLG------LGSRLLMVMED-MGICRN-QETYEILLDYHV---NAG------RLDDTWLIINEMRSKGFQLNS 217 (532)
Q Consensus 155 ~~~~~~g~~~------~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~---~~~------~~~~a~~~~~~m~~~~~~~~~ 217 (532)
....+.+..- ...+.|+-... .++.|- ...|+..+..+- ..| +.+...+.+.+|..-.+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 6655543221 12233433333 234443 335666555432 233 345566667777664322111
Q ss_pred HhHH------HHHHHH-H------cCCChHHHHHHHHHHHH--cCCC----CCHHHHH-----------HHHHHHhccC-
Q 009556 218 FVYG------KVIGLY-R------DNGMWKKAVGIVEEIRE--MGLS----LDRQIYN-----------SIIDTFGKYG- 266 (532)
Q Consensus 218 ~~~~------~ll~~~-~------~~~~~~~a~~~~~~~~~--~~~~----~~~~~~~-----------~li~~~~~~g- 266 (532)
..|. .=++-. + ..--+-.|.+.++++.. .|+. .+..++| ..|+.-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1111 111110 1 01124455556665532 2221 1122222 2222211111
Q ss_pred ----C-HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------------------
Q 009556 267 ----E-LV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP------------------ 322 (532)
Q Consensus 267 ----~-~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------------------ 322 (532)
+ .. ..--++++...- +.-....|----.-+...++-+.|+.....-.+. .|+.
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHHHhhcccHHHHh
Confidence 1 11 111122222211 1112233333333445566777777665543221 2221
Q ss_pred HHHHHHHHHHHc---cCCHHHHHHH------HHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC-CCCCH
Q 009556 323 KIFITIISCLGE---LGKWDVIKKN------FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-LQPSG 392 (532)
Q Consensus 323 ~~~~~ll~~~~~---~~~~~~a~~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 392 (532)
.+|..++..+.+ .++-+.+... ..+..-.....-..+|...+.+..+..-++.|..+|-+..+.+ +.++.
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 011111111110 0111111000 0111000011224566777777778888899999999998888 56788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYSTLM 469 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~ 469 (532)
.++++++.-++ .|+...|..+|+.-... -||...| +..+.-+..-++-+.|..+|+...++ +..+ ...|..+|
T Consensus 434 yi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 88888888665 57888899998865544 3454443 56677778889999999999966543 2223 45788999
Q ss_pred HHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~ 509 (532)
+--..-|+...+..+-++|.+ +.|...+.....+-+.-
T Consensus 510 ~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 510 EYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 988899999999999999987 67777776666655443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0064 Score=42.01 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=39.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLLMVMED 175 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 175 (532)
++.+|..+...+...|++++|+..|.+..+.. +.+...|..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666654 334556666666666666 46666666665554
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.3 Score=42.60 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
+..+++|++=.. .....++..+...+.+.-....+.++++...+.++...+.|+..-.+.|+.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555554332 3345566666667777777778888887777777888888888888888888888888877
Q ss_pred HHcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 384 KLEGLQPSGSMFCILA-----NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 384 ~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
.+..-..+..+.+.++ ..|.-.+++..|...+.+..... ..|....|.-.-+..-.|+..+|.+.++.|...
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6654444444444433 23444567888888887777654 345555555555555678899999999998875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=53.49 Aligned_cols=132 Identities=17% Similarity=0.031 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh----cCC-CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHH----cCC-CCCH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKD----RGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKL----EGL-QPSG 392 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~ 392 (532)
..|..+...|.-.|+++.|+..++.-.. .|- ......+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555566667788888776654332 121 11234566778888888889988888875432 221 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcc----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEP----E-GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+.-+|...|.-..++++|+.++.+-.. . ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455677777777788888887764321 1 112245667788889988898888887766544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.03 Score=50.35 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALSVYHLMKDIGI--SPDLVTYSTL 468 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 468 (532)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.-. +.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 443333334556677777666666654 2322 3455666677777777777777777764311 1123334445
Q ss_pred HHHHHhcCCcChHHHHHHHHHh
Q 009556 469 MKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
...+...|+.++|.++|++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5566667777777777777765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.035 Score=49.93 Aligned_cols=97 Identities=14% Similarity=0.013 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~ 151 (532)
..|+..+..+.+.|++++|+..|+.+.+. .|+. ..+-.+..++...|++++|...|+.+.+.- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44666666556678888888888888776 3442 466677778888888888888888887542 011233444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.+...+...|+.+.|.++|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.044 Score=53.63 Aligned_cols=258 Identities=13% Similarity=0.134 Sum_probs=140.6
Q ss_pred cCHHhHHHHHHHHHcCCChHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhCCC
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKAVGI---------VEEIREMGLSLDRQIYNSIIDTFGKYGE--LVEALEVFEKMQQESI 283 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 283 (532)
+.+..+.+-+..|...|.+++|.++ ++.+... ..+...++..=++|.+..+ +-+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 3444455555667777877777654 2222211 1133345555567766665 3344455677888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 009556 284 RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFI-----TIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (532)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (532)
.|+... +...++-.|++.+|-++|.+- |..... ..|+ -..+-+...|..++-..+.++-.+- .-+.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~ 703 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNI 703 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhc
Confidence 787653 445566677888888777653 222100 0111 1122233344433333333221110 0000
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHH------HHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAA------LKLEGL---QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
.-=.+..+++...|+.++|..+.-+ +.+-+. ..+..+...+..-+.+...+.-|.++|..|-+.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 0012334555667777777665321 111111 122334444445555566677788888877542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-----------TYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
..+++.....++|.+|..+-+...+. .||+. -|.-.-++|.++|+..+|.++++++....+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 35677888899999999888776542 34432 234445788899999999999999875433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=47.52 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH-----hCCCCCCHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQIL 503 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~~l 503 (532)
...++..+...|++++|.++.+.+.... +-|...|..++.+|...|+...|.+.|+++. +.|+.|+..+-...
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 3445555666777777777777766542 2355667777777777777777777776664 34777776655443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.016 Score=40.44 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
..|.+.+++++|+++++.+...+ +.++..+......+...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45677777888888887777764 4566667777777777778888877777777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=47.58 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (532)
.++..+...|++++|.++.+.+.... +.|...|..+|.+|...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555555443 334445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.99 Score=46.18 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS----YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
...+-|+.+++..-++-|+.+.+.-. .+..+ .......+.+.|++++|...|-+....- .| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 34556677777777777776655432 23333 3333445557788888888776655321 22 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.-|....++.+-...++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 556666666677777778877777 556666778888888888887666665543 2211 112345566666777677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
+|..+-..... .......++ -..+++++|++.+..+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66655443322 333333333 34578888888887764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.91 Score=44.98 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 200 DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 200 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+...-+++++++|-.|+... +...++-.|++.+|-++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33444566777777777653 34456677888888887765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.015 Score=40.59 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
.|.+.+++++|.++++.+...+. .+...|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555421 2344444555555555555555555555554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.76 Score=42.75 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
+|..+.....+.|+.+-|..+++. .|+.. .=+..+.+.|+.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 467777778888999999887754 23332 225566677777776 45666665 3443 4444444333
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
+.. . .+++.-+... |.. ..+...|++..+.+.-.++|..-.+. .......+-.++.. .+.+.-..
T Consensus 68 ~l~-~---s~f~~il~~~---p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 68 KLS-L---SQFFKILNQN---PVA---SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred hCC-H---HHHHHHHHhC---cch---HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHH
Confidence 222 1 1233222221 221 23344455555555544444321110 11111111122221 23333222
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH---HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 239 IVEEIREM-GLSLDRQIYNSIIDTFGKYGELVEALEVFEK---MQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
.+..+.+. +-..+......++ ++..++++. +... +......+.+..|.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 22222211 0001111111111 112222211 1110 11112234555677777888888888776665
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
. .|+..-|...+.+++..++|++..++-.. .-++.-|..+++++.+.|+..+|..++..+ +
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~---- 264 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI-----P---- 264 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C----
Confidence 2 47888888899999999999988876432 223567888999999999999988888762 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+..-+..|.+.|++.+|.+.--+..
T Consensus 265 -~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 265 -DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred -hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 3456778889999998887655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.6 Score=40.36 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..-..+|-...++++|...+.+..+- ...|...|. - ...++.|.-+.+++.+. +.-+..|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34666667777778888888877776532 122222222 1 22345555566666543 22344566667778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---C--CCcCHHhHHHHHHHHHcCCC
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK---G--FQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~~~ 232 (532)
..+|..+.|-..+++.-+. .++.++++|+++|++...- + ...-...+..+-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888777766665441 2344556666666554221 0 00011223333445555555
Q ss_pred hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHH
Q 009556 233 WKKAVGIVEEIREM----GLSLD-RQIYNSIIDTFGKYGELVEALEVFEKMQQES---IRPDIVTWNSLIRWHCKAGDVA 304 (532)
Q Consensus 233 ~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~ 304 (532)
+++|-..+.+-... .--++ -..|.+.|-.|.-..++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554443322111 00111 1234444445555667777777776643321 122455556666655 345555
Q ss_pred HHHHHH
Q 009556 305 KALELF 310 (532)
Q Consensus 305 ~A~~~~ 310 (532)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.07 Score=41.75 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcc---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 009556 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEP---------------EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK- 454 (532)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 454 (532)
|..++..++.++++.|+.+....+++..=. ....|+..+..+++.+|+..|++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888887765311 1234666666677777776777777777666664
Q ss_pred HCCCCCCHHHHHHHHHHHHh
Q 009556 455 DIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~ 474 (532)
..+++.+..+|..|+.-+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 33555556666666654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.2 Score=40.67 Aligned_cols=90 Identities=9% Similarity=-0.038 Sum_probs=69.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChh
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (532)
-.+...|++++|..+|.-+...+ +-|..-|..|..++-..+++++|...|......+ ..|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 34457899999999999888765 3456667777778888899999999988877655 345555666778888889999
Q ss_pred HHHHHHHHHHHc
Q 009556 165 LGSRLLMVMEDM 176 (532)
Q Consensus 165 ~A~~~~~~m~~~ 176 (532)
.|...|+...+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988888763
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=40.02 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-CCCCCHHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLIN 435 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 435 (532)
|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44444555555555555555555554444322 33444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=41.52 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=45.9
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChH
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 481 (532)
+...|++++|..+|+-+...+ .-|..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 334566666666665554433 22344445555555555666666666655543322 2333344455556666666666
Q ss_pred HHHHHHHHh
Q 009556 482 PEIYKQMES 490 (532)
Q Consensus 482 ~~~~~~m~~ 490 (532)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.3 Score=41.83 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 292 SLIRWHCKAGDVAKALELFTQMQEQG---FYPDPKIFITIISCLGE---LGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
.++-+|-...+++..+++.+.+.... +.-....-....-++.+ .|+.++|.+++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777888888887776541 11122222233334455 6777777777777555555666666666655
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC-H-
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK-Y- 443 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~- 443 (532)
.|-.. |. +.+. -+.. ..++|...+.+.-+. .||..+=-.+...+...|. .
T Consensus 226 IyKD~---------~~---~s~~-~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------FL---ESNF-TDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------HH---HcCc-cchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 54321 10 0000 0111 144555555544332 2333221111112222222 1
Q ss_pred --HHHHHHH---HH-HHHCCCC---CCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 444 --KEALSVY---HL-MKDIGIS---PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (532)
Q Consensus 444 --~~A~~~~---~~-m~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 505 (532)
.+..++- .. ..+.|.. .|--.+.+++.++.-.|++++|.+..++|.+. .|+..-....++
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W~l~St~~ 346 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAWELESTLE 346 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcchhHHHHHH
Confidence 1122221 11 1122322 23334567788888889999999999998874 344433333333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.015 Score=41.26 Aligned_cols=61 Identities=30% Similarity=0.464 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDI----GIS-PD-LVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
+|+.+...|...|++++|+..|++..+. |-. |+ ..++..+..++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555421 110 11 2345555555666666666666655544
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.019 Score=40.73 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CC---CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALG--FH---PS-SISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.+|+.+...|.+.|++++|++.|++..+.. .. |+ ..++..+...+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667777777777777777777655331 11 11 3355666666666666666666666654
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.9 Score=40.69 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=23.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
..|++.+|..+|+...... +.+...--.++.++...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555444432 2223333444445555555555555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.76 Score=36.97 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
...+|..+.+.+....+...++.+...+ ..+...++.++..+++.+ .++..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3577888888888888888888888776 467778888888888763 3334444332 1233444556677777
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
.+.++++..++.++.. |...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777766665532 22233333333 5566666655541 14445555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.28 Score=47.87 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=103.6
Q ss_pred HHHHHcCChHHHHHHHH--HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 85 QYCCKLGDIDEAMALLA--QMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...-+++++++.+..+ ++.. .+ ...-.+.++.-+-+.|..+.|+++-.+-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34456799999877775 2221 11 24557888999999999999998754422 23456678899
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
++.|.++.++. .+...|..|.+...+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 99998765433 4677999999999999999999999987643 55667778888888888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
....|- +|....++.-.|+.++..+++.+-
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 776652 455555566668887777776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.61 Score=44.66 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
+...|+.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46779999999999999999999999988874 553 35899999999999999999999999875
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.2 Score=44.14 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=66.9
Q ss_pred CCCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 70 NSGEEFSGNSYNKSIQYCCKL-----GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFN 144 (532)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~ 144 (532)
..+.+.|-.+|-+.+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+..-... .+|+..
T Consensus 60 a~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~------ 131 (406)
T KOG3941|consen 60 AEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV------ 131 (406)
T ss_pred cCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH------
Confidence 444556666666666666432 4455555566667777777777777777666544321110 001100
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL-DDTWLIINEMR 209 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 209 (532)
.--|- .+-+-+++++++|...|+.||..+-..|+.++.+.+-. .+..++.-.|.
T Consensus 132 ---------F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 ---------FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ---------HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 00000 12234667777777777777777777777777776653 34444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.3 Score=40.57 Aligned_cols=413 Identities=12% Similarity=0.131 Sum_probs=223.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CCC--------
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEAL--ASVGRTLEADAIFQEMVCF--GFN-------- 144 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~--g~~-------- 144 (532)
.+.-+.+|++|.. ++.+.-...+....+. .| ...|-.+..++ -+.+.+.+|.+.+..-.+. +..
T Consensus 46 Evl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni 121 (549)
T PF07079_consen 46 EVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNI 121 (549)
T ss_pred HHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 3445778888875 4555555555555544 22 23344444443 3678888888877665543 211
Q ss_pred ----CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CcCHHHHHHHHHHHHhc--------CC-------hHHH
Q 009556 145 ----PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI----CRNQETYEILLDYHVNA--------GR-------LDDT 201 (532)
Q Consensus 145 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~--------~~-------~~~a 201 (532)
+|...-+..+..+...|++.+++.++++|...=. ..+..+|+.++-.+.+. .. ++.+
T Consensus 122 ~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemi 201 (549)
T PF07079_consen 122 QQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMI 201 (549)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHH
Confidence 2223335567778889999999999888876533 36788888755544432 11 1222
Q ss_pred HHHHHHHHHC------CCCcCHHhHHHHHHHHHcC--CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 009556 202 WLIINEMRSK------GFQLNSFVYGKVIGLYRDN--GMWKKAVGIVEEIREMGLSLDRQ-IYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 202 ~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 272 (532)
.-..++|... .+.|.......++....-. .+..--.++++.....-+.|+-. +...++..+.+ +.+++.
T Consensus 202 lfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 202 LFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 2223333221 2334444444444333221 12222233333333333444432 33444444444 555555
Q ss_pred HHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHH-cc---CC
Q 009556 273 EVFEKMQQESIR----PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT-------IISCLG-EL---GK 337 (532)
Q Consensus 273 ~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------ll~~~~-~~---~~ 337 (532)
.+-+.+....+. .=+.++..++....+.++..+|.+.+.-+... .|+...-.. +-+..+ .- .+
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 555444332111 13456788888889999999998888877643 333221111 111111 11 12
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHH---HHHHhcCC-cccHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhc---C
Q 009556 338 WDVIKKNFENMKDRGHGKIGAIYAILV---DIYGQYGR-FRDPEECIAALKLEGLQPSGSMFCIL----ANAYAQQ---G 406 (532)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~---g 406 (532)
...-..+++.+...++.. ......|+ .-+.+.|. -++|..+++.+.+-. +-|...-|.+ =.+|.+. .
T Consensus 358 lr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 358 LRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 223334444444443221 12222222 33445565 778899998887642 2233322222 2233322 2
Q ss_pred CHHHHHHHHHHhccCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCh
Q 009556 407 LCEQTVKVLQLMEPEGIEPNL----VMLNVLINA--FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHK 480 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (532)
.+..-.++-+-..+.|++|-. ..-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 344445555555667777633 344555543 4568899888754333333 78999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009556 481 VPEIYKQMESSGCTPDRKARQILQSA 506 (532)
Q Consensus 481 a~~~~~~m~~~g~~p~~~t~~~l~~a 506 (532)
|+.++..+ +|+..+++.=++-
T Consensus 514 A~~~l~~L-----P~n~~~~dskvqK 534 (549)
T PF07079_consen 514 AWEYLQKL-----PPNERMRDSKVQK 534 (549)
T ss_pred HHHHHHhC-----CCchhhHHHHHHH
Confidence 99998764 6777776654443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.8 Score=41.44 Aligned_cols=134 Identities=10% Similarity=0.097 Sum_probs=97.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.+-..|.++|..--...+.+.+..+++.+... .|... -|......=.+.|..+.+.++|++... |++..+..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556777887766666677777888888765 45544 456666666788999999999999885 456666777666
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHc-CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 154 LRGFL-KKGLLGLGSRLLMVMEDM-GIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 154 i~~~~-~~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
...+. ..|+.+...+.|+...+. |.. .....|...|..-..++++.....++++.++-
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55544 457778888888887764 221 34557888888888888999999999998875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.4 Score=40.36 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRG-HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
..|...+....+...++.|..+|.+..+.+ ..++..++++++..++ .|+..-|..+|+.-...- +.+..--+..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 456667777778888999999999999888 5778889999999876 478888999998765542 2233334566677
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
+...++-+.|..+|+...+. +..+ ...|..+|.-=..-|+...+..+=++|.+. -|...+.....+-|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 78889999999999965543 1222 467889999888999998888887777763 34443333333333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.6 Score=38.34 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-----H
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII-----D 260 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~ 260 (532)
+.++..+.-.+.+.-...++.+.++...+.++.....+.+.-.+.|+.+.|...|+...+..-..|....+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44445555555555555555555555444455555555555555666666666655544332222222222222 2
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.|.-.+++.+|...|+++...+.. |+..-|.-.-+..-.|+...|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233444555555555555443221 3333333333333345555555555555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.2 Score=39.78 Aligned_cols=127 Identities=14% Similarity=0.028 Sum_probs=74.7
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-CC-CCCHHHHHHHHHHHHhc
Q 009556 363 LVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE-GI-EPNLVMLNVLINAFGVA 440 (532)
Q Consensus 363 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~ 440 (532)
-..++.+.|+..++-.+++.+-+....|+. +. +..+.+.|+. +..-++..... .+ +.|.++.-.+..+-...
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 345666777777777777777766544433 21 2223344432 22222211110 11 33556666777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCcChHHHHHHHHHhCCCCCCH
Q 009556 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA-KKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
|++..|..--+...+ ..|....|..|.+.-... |+-.++...+-+..+..-.|+-
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888887766555554 357777777776655444 8888888888888766545543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.2 Score=39.77 Aligned_cols=290 Identities=15% Similarity=0.082 Sum_probs=174.0
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 009556 150 YNILLRGFLK--KGLLGLGSRLLMVMEDMGICRNQETYEILLDY--HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG 225 (532)
Q Consensus 150 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 225 (532)
|.+|-.++.. .|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.. |+.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 3444444433 46666776665554422 22455555555543 3456888888888888876 3444333233
Q ss_pred ----HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHH
Q 009556 226 ----LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVT--WNSLIRWHC 298 (532)
Q Consensus 226 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~--~~~li~~~~ 298 (532)
..-+.|+.+.|.++-+..-..- +.-...+.+.+...|..|+++.|+++.+.-.+. -+.++..- -..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 3346788888888777766543 223556778888889999999999988876543 23334322 223333222
Q ss_pred H---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcc
Q 009556 299 K---AGDVAKALELFTQMQEQGFYPDPKI-FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374 (532)
Q Consensus 299 ~---~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 374 (532)
. ..+...|...-.+..+ +.||..- -.....++.+.|+..++-.+++.+-+....| .++ ..|.+...-+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia----~lY~~ar~gd 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIA----LLYVRARSGD 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHH----HHHHHhcCCC
Confidence 1 2345555554444333 3454322 2233457889999999999999998875444 333 2344444444
Q ss_pred cHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH
Q 009556 375 DPEECIAALKLE-GLQP-SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG-VAGKYKEALSVYH 451 (532)
Q Consensus 375 ~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~ 451 (532)
.+..-++...+. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++..++.
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 555555544331 2234 3445556677777888988888777766553 677777877776554 4499999998888
Q ss_pred HHHHC
Q 009556 452 LMKDI 456 (532)
Q Consensus 452 ~m~~~ 456 (532)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 87764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.35 Score=45.10 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=49.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHc-----CCCC---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 009556 85 QYCCKLGDIDEAMALLAQMQAL-----GFHP---------SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~ 150 (532)
+.|.+.|++..|...|++.... +..+ -..+++.+.-++.+.+++..|++..+..+..+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4678889999999888886542 0100 11234444555555555555555555555544 3444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
---..++...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444555555555555555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.1 Score=44.40 Aligned_cols=161 Identities=11% Similarity=0.134 Sum_probs=97.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCH------hHHHHHHHHHHh----cCCcccHHHHHHHHHHcCCCCCHHHHH
Q 009556 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIG------AIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFC 396 (532)
Q Consensus 327 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (532)
.++...+-.|+-+.+.+.+....+.+--..+ ..|...+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 4444444555555555555554432211111 122222322222 34566788888888775 56666665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 009556 397 IL-ANAYAQQGLCEQTVKVLQLMEPEG---IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA- 471 (532)
Q Consensus 397 ~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~- 471 (532)
.. .+.+...|++++|.+.|+...... .......+--+...+.-.++|++|.+.|.++.+.. .-...+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 355677899999999999765421 12233456677788889999999999999998752 2234445444333
Q ss_pred HHhcCCc-------ChHHHHHHHHHh
Q 009556 472 FIRAKKF-------HKVPEIYKQMES 490 (532)
Q Consensus 472 ~~~~g~~-------~~a~~~~~~m~~ 490 (532)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3456777 778888877753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.21 Score=43.99 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA----------------GKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
.++-....++.|.+.|+.-|..+|+.|+..+-+. .+-+-+++++++|...|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444555555666666666666655554332 123447888899999999999998888888
Q ss_pred HHHhcCC
Q 009556 471 AFIRAKK 477 (532)
Q Consensus 471 ~~~~~g~ 477 (532)
++.+.|-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 8866654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.34 Score=46.29 Aligned_cols=66 Identities=17% Similarity=-0.002 Sum_probs=58.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
+.+...++.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999998865 543 45899999999999999999999999874
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.2 Score=35.89 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
.++..+...+........++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44455544555555555555555444 24444555555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.4 Score=39.00 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCChHhHHHHHHHHHhcCC-
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALAS--VG----RTLEADAIFQEMVCFGF---NPKLRFYNILLRGFLKKGL- 162 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~- 162 (532)
+++.+.+++.|.+.|++.+..+|-+..-.... .. ...+|.++|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677778888777777666553333322 22 24557778888876531 2344445555433 2222
Q ss_pred ---hhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 009556 163 ---LGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGR---LDDTWLIINEMRSKGFQLNSFVYGKVI 224 (532)
Q Consensus 163 ---~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll 224 (532)
.+.+..+|+.+.+.|...+.. .+.+-+-++..... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234555666666655543322 22222222222111 335556666666666666555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.45 Score=46.44 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
...+.++..+-+.|..+.|+++...-. .-.....+.|+++.|.++.++ ..+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 347889999999999999998765533 235666788999999887654 35778999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
.+.|+++.|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 999999999999987764 67788888889998888888777766642 455555666667777766
Q ss_pred HHHHH
Q 009556 238 GIVEE 242 (532)
Q Consensus 238 ~~~~~ 242 (532)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.1 Score=37.25 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=12.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 254 IYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
.|+-...+|..+|..+.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444445555555555555444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.9 Score=42.80 Aligned_cols=162 Identities=22% Similarity=0.121 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE------TYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
+..++....-.||-+.+++.+.+..+.+--..+. .|...+..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4556666666777777777777655432112222 23444443333 44678888888888876 556555
Q ss_pred HHHH-HHHHHcCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 220 YGKV-IGLYRDNGMWKKAVGIVEEIREMGL---SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 220 ~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
|... .+.+...|+.++|++.|+....... ......+--+...+.-.+++++|.+.|..+.+..- .+...|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5433 3567778899999999887653211 12234455566667888999999999999987522 23344443333
Q ss_pred -HHHHcCCH-------HHHHHHHHHHH
Q 009556 296 -WHCKAGDV-------AKALELFTQMQ 314 (532)
Q Consensus 296 -~~~~~g~~-------~~A~~~~~~m~ 314 (532)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34456766 88888888865
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.3 Score=34.38 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 458 (532)
....+......|.-+.-.++..++.+.+ .++....-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4444555666666666666666665432 55666666666666666666666666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.75 Score=41.74 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=99.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCcc
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR---GHGKIGAIYAILVDIYGQYGRFR 374 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 374 (532)
...|++.+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++... +.|....+-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567778887788887764 4556666666677888888888888888877754 22222333344455556788888
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 375 DPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE---GIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
+|++.-++..+.+ +.|...-.++...+.-.|+..++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888777654 445556666777777778888888876654432 101111223333444556688888888887
Q ss_pred HHH
Q 009556 452 LMK 454 (532)
Q Consensus 452 ~m~ 454 (532)
.=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.9 Score=38.32 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=71.0
Q ss_pred HHcCChHHHHHHHHHHHHcC--CCCCHh-----HHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCh----
Q 009556 88 CKLGDIDEAMALLAQMQALG--FHPSSI-----SYASLIEALASVG-RTLEADAIFQEMVCF--------GFNPKL---- 147 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~~-----~~~~li~~~~~~~-~~~~A~~~~~~~~~~--------g~~~~~---- 147 (532)
.+.|+++.|..++.+..... ..|+.. .+-.+.......+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 47799999999999877643 123221 1222333334455 888887777765432 112222
Q ss_pred -HhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 148 -RFYNILLRGFLKKGLLG---LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 148 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
.++..++.+|...+..+ .|.++++.+..... -.+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556666776666544 44555555543322 22445555566666677777777777777765
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.4 Score=37.29 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=55.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
|-...|+.-+..+ +.|++++|.+.|+.+..+. +-+ ..+.-.++.++-+.++++.|+...++..+.-..-...-|.
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4455677666654 7799999999999998763 333 3455566777888999999999999888653222223344
Q ss_pred HHHHHHH
Q 009556 152 ILLRGFL 158 (532)
Q Consensus 152 ~li~~~~ 158 (532)
.-|.+++
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.74 Score=35.53 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=62.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHHHhcCC
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGL 162 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~ 162 (532)
+++..|+++.|++.|.+....- +.+...||.-.+++.-.|+.++|++=+++..+..-.... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567888888988888877652 556778888888888888888888888887764322222 223333445566677
Q ss_pred hhHHHHHHHHHHHcC
Q 009556 163 LGLGSRLLMVMEDMG 177 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~ 177 (532)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777776666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.8 Score=38.77 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMG---LSLDRQIYNSIIDTFGK---YGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
.++-+|....+++...++.+.+.... +.....+-....-++.+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44444555555665555555555431 11111112222233333 4555555555555433333344444444443
Q ss_pred H
Q 009556 296 W 296 (532)
Q Consensus 296 ~ 296 (532)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.2 Score=40.40 Aligned_cols=164 Identities=12% Similarity=0.033 Sum_probs=111.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH
Q 009556 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF----ITIISCLGELGKW 338 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~ 338 (532)
-..|+..+|-..++++.+. .+.|...++.-=.+|.-+|+.+.-...++++... ..+|...| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567888888888888876 4558888888888999999999999999998753 23333222 2333455688999
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 339 DVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYAQQGLCEQTVKVL 415 (532)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 415 (532)
++|++.-++..+.+ +.|.-.-.+....+...|++.++.+...+-...=-..+ ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988876 56777777888888899999999887765432100000 111222223345568999999999
Q ss_pred HHhc-cCCCCCCHHH
Q 009556 416 QLME-PEGIEPNLVM 429 (532)
Q Consensus 416 ~~m~-~~~~~p~~~~ 429 (532)
+.-+ ..--+.|.+.
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 8543 3322444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.97 Score=34.93 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHhcCC
Q 009556 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET---YEILLDYHVNAGR 197 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~ 197 (532)
+++..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888777643 45667788777777778888887777777666432222222 2222334555666
Q ss_pred hHHHHHHHHHHHHCC
Q 009556 198 LDDTWLIINEMRSKG 212 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~ 212 (532)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=5.4 Score=38.53 Aligned_cols=117 Identities=13% Similarity=0.056 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHc-CCCCC-HhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 93 IDEAMALLAQMQAL-GFHPS-SISYASLIEALAS---------VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 93 ~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+ +.|......+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677777777721 12333 3334333333221 123445666666666665 456666666666666666
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+++.|..+|++....++ -...+|-.....+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 67777777777666432 22334444444555566677776666665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.21 Score=30.62 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASL 118 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 118 (532)
.|..+...|.+.|++++|+++|+++.+.. +-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 35556666666777777777777666653 3344444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.64 Score=41.82 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh-----CCCCCCHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQI 502 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 502 (532)
.++..++..+...|+.+.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667777777777777777777777653 23666777788888888887777777777764 577777777776
Q ss_pred HHHHH
Q 009556 503 LQSAL 507 (532)
Q Consensus 503 l~~a~ 507 (532)
..+++
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.2 Score=33.19 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
....++.+.+.|+-++-.+++.++.. .-.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666666666666666543 2234555555556666666666666666666655553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.4 Score=36.49 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
|...-..+...+...|+.++|.+.+-.+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555555444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.92 E-value=11 Score=40.72 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH--HHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--MLNVLIN 435 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~ 435 (532)
..|.+..+.+...+.+++|.-.|+..-+ ....+.+|..+|++.+|+.+..++... -|.. +-..|+.
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHH
Confidence 3444555555566677777666665422 233456777778888888777776532 1222 2256677
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009556 436 AFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (532)
-+...+++-+|-++..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHcccchhHHHHHHHHhc
Confidence 77778888887777766554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.2 Score=37.87 Aligned_cols=96 Identities=22% Similarity=0.095 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-ChHhHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFG-FNP-KLRFYNIL 153 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~~-~~~~~~~l 153 (532)
.|+.-++.+ +.|++.+|.+.|....+.. +.+ ...+--|..++...|++++|..+|..+.+.- -.| -+..+--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 588777765 6688999999999888773 222 3356667888889999999999888887642 112 23556667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888877764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.9 Score=33.76 Aligned_cols=134 Identities=11% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+..+.+.+.+++|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 44556667778888888888888888888766554443 33444544443333322221 222233332233221
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0114556667777777777777777664322 222234455555555555444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=5.3 Score=35.23 Aligned_cols=71 Identities=14% Similarity=-0.000 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 123 ASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+.|++++|.+.|+.+..+. -+-...+--.++-++-+.++.+.|+..+++....-+......|...|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 35677777777777776542 111233444555566666777777766666665433333334444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.19 E-value=6.9 Score=36.07 Aligned_cols=128 Identities=12% Similarity=0.264 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhccCC--
Q 009556 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRD--NG----MWKKAVGIVEEIREMGL---SLDRQIYNSIIDTFGKYGE-- 267 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 267 (532)
++...+++.|.+.|+.-+..+|.+..-.... .. ....+..+|+.|++... .++..++..++.. ...+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566777777777666665543332222 11 24456667777766532 2233444444333 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009556 268 --LVEALEVFEKMQQESIRPDI--VTWNSLIRWHCKAGD--VAKALELFTQMQEQGFYPDPKIFITI 328 (532)
Q Consensus 268 --~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (532)
.+.++.+|+.+.+.|+..+. .....++.......+ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455666666665554332 222222222211111 34566677777777766665555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.37 Score=29.46 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
++..+...+...|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.11 E-value=6.9 Score=35.85 Aligned_cols=165 Identities=14% Similarity=0.117 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCCHH---HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWD---VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA 399 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (532)
.++..++.++...+..+ +|..+++.+... .+..+.++-.-++.+.+.++.+++.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34556666776666544 444455555332 2333555555666666678888888888888765321 223344444
Q ss_pred HHHHh--cCCHHHHHHHHHHhccCCCCCCHH-HHH-HHHH---HHHhcC------CHHHHHHHHHHHHH-CCCCCCHHHH
Q 009556 400 NAYAQ--QGLCEQTVKVLQLMEPEGIEPNLV-MLN-VLIN---AFGVAG------KYKEALSVYHLMKD-IGISPDLVTY 465 (532)
Q Consensus 400 ~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~-~~~-~li~---~~~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~ 465 (532)
..+.. ......|...+..+....+.|... ... .++. .....+ +.+...++++...+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44421 123345555555554433344332 111 1111 111111 14444455553322 2223333332
Q ss_pred H---HH----HHHHHhcCCcChHHHHHHHHH
Q 009556 466 S---TL----MKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 466 ~---~l----~~~~~~~g~~~~a~~~~~~m~ 489 (532)
. +| ...+.+.+++++|.+.|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 22 344567899999999988554
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.6 Score=36.68 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
...+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777777777777777777777776543333 23456667777777777777766665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.90 E-value=4 Score=32.52 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
..|+.- ....+.|++++|++.|+.+..+- -+-....-..++.++.+.+++++|...+++.++....--..-|...+.
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344443 44457899999999999988772 112344566788889999999999999999888753222344555555
Q ss_pred HHHh
Q 009556 156 GFLK 159 (532)
Q Consensus 156 ~~~~ 159 (532)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.4 Score=39.67 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCcCHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED-----MGICRNQETYE 186 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 186 (532)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4467788888888999999999999988776 56888899999999999999999998888765 48888888888
Q ss_pred HHHHHHHh
Q 009556 187 ILLDYHVN 194 (532)
Q Consensus 187 ~li~~~~~ 194 (532)
.......+
T Consensus 232 ~y~~~~~~ 239 (280)
T COG3629 232 LYEEILRQ 239 (280)
T ss_pred HHHHHhcc
Confidence 77777433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=4.7 Score=33.11 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
.+.+..++|+.-|..+.+.|...-+.. ...........|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 344555555555555555443221111 11122233344555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.76 E-value=11 Score=37.42 Aligned_cols=367 Identities=13% Similarity=0.094 Sum_probs=184.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHC-CCC-CChHhHHHHHHHHHhcCChh
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-SVGRTLEADAIFQEMVCF-GFN-PKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~ 164 (532)
.+.|..+.+.++|++-... ++.+...|...+.-+. ..|+.+.....|+..... |.. -....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 5679999999999998764 5677778877776555 457888888899888764 322 24566888888888899999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHH---hc------CChHHHHHHHHHHHHC---C-CCcCHHhHHHHHHHH-HcC
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHV---NA------GRLDDTWLIINEMRSK---G-FQLNSFVYGKVIGLY-RDN 230 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~------~~~~~a~~~~~~m~~~---~-~~~~~~~~~~ll~~~-~~~ 230 (532)
....+++++.+. ....|+..-.-|. +. ...+++.++-.....+ + ..+.......-+.-- ...
T Consensus 169 ~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 999999999884 2223333333222 12 1233333332222211 0 000111111111000 001
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHHcCCH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES---I----RPDIVTWNSLIRWHCKAGDV 303 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~----~p~~~~~~~li~~~~~~g~~ 303 (532)
+..+++..+..+... .--.++-..-...+....|+.-..+. + .++..+|..-+.--...|++
T Consensus 245 ~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 111111111111110 01112222223333333444333321 1 22456677777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
+.+.-+|++....- ..=...|-..+.-....|+.+.+..++....+.-++..+.+--.-....-..|+++.|..+++.+
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 88777777765310 00112222233333344777777766666555433322222211112223456778888888777
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHhccCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 009556 384 KLEGLQPSGS-MFCILANAYAQQGLCEQTV---KVLQLMEPEGIEPNLVMLNVLIN-----AFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 384 ~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~ 454 (532)
...- |+.. .-..-+....+.|+.+.+. +++....... -+......+.- .+.-.++.+.|..++.++.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 6653 3322 1112233444566666665 3333333221 12222222221 2333567777888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 009556 455 DIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g 476 (532)
+. ++++...|..++..+...+
T Consensus 469 ~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hc-CCccHHHHHHHHHHHHhCC
Confidence 64 4556666777766665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.70 E-value=11 Score=36.88 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=24.1
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 363 LVDIYGQYGRFRDPEECIAALKLEGLQ-PSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 363 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
+..+..+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444445555555555544433211 12223334444444444444444444443
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.66 E-value=2.6 Score=37.45 Aligned_cols=14 Identities=0% Similarity=-0.068 Sum_probs=5.9
Q ss_pred ChHHHHHHHHHHHH
Q 009556 197 RLDDTWLIINEMRS 210 (532)
Q Consensus 197 ~~~~a~~~~~~m~~ 210 (532)
++..|...|....+
T Consensus 156 dy~~A~~~F~~fi~ 169 (262)
T COG1729 156 DYAEAEQAFQAFIK 169 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=3.8 Score=39.58 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=82.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (532)
..+..+|.++.++..+.+ +.|+.....+..++...++++.|..+|++....+ +....+|......+.-.|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667888888888887 7788998888888888999999999999999875 34456666666667778999999999
Q ss_pred HHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 170 LMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 170 ~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
+++..+..+.. ........++.|+. ...++|+++|-+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 99977643222 22223333434544 345666666543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.41 E-value=19 Score=39.12 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCChHhHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 009556 144 NPKLRFYNILLRGFLKKG--LLGLGSRLLMVMED 175 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 175 (532)
.|+ .....+|..|.+.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44566777888777 66677766666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.35 Score=28.05 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQM 103 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m 103 (532)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666777777777766663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.26 E-value=16 Score=37.98 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=87.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
.+.+.+.|++++|..-|-+-... +.| ..+|.-+....+..+-...++.+.+.|+ .+...-+.|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 34456789999999887665532 122 2356666677777777888888888885 5666678899999999998
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
+.-.+..+... .|.. ..-....+..+.+.+-.++|.-+-.+... .......+ +-..+++++|++.+..+
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 88777666544 2221 11234456666666666666655444322 22222222 23455666666665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=15 Score=37.59 Aligned_cols=90 Identities=9% Similarity=0.065 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
....+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+.+. .+.-|.-..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344456666777888999999999998887 7899999999999999999998877655443 244577889
Q ss_pred HHHHhcCCcChHHHHHHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~ 489 (532)
.+|.+.|+.++|.+++-+..
T Consensus 752 e~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhcccHHHHhhhhhccC
Confidence 99999999999999987764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.17 E-value=5.5 Score=32.43 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLN-VLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
+.++.+++..++..+.-. .|...... .-...+...|++.+|.++|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334555555555554432 23222211 112334455566666666655544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.13 E-value=5.9 Score=32.69 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=9.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 009556 292 SLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~ 312 (532)
.++..+...|++-+|+++.+.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 344444444444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.1 Score=40.22 Aligned_cols=97 Identities=14% Similarity=-0.015 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
..+++.+.-.|.+.+++..|++..+.....+ ++|+...-.-.++|...|+++.|+..|+.+.+.. +.|-.+-+-|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3457778888999999999999999999887 7888888888999999999999999999999864 3344444555554
Q ss_pred HHhcCChhH-HHHHHHHHHH
Q 009556 157 FLKKGLLGL-GSRLLMVMED 175 (532)
Q Consensus 157 ~~~~g~~~~-A~~~~~~m~~ 175 (532)
--+..+..+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444333 3566666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.75 E-value=8.2 Score=33.54 Aligned_cols=167 Identities=18% Similarity=0.149 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009556 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS- 330 (532)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~- 330 (532)
..+......+...++...+...+...... ........+......+...+++..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 34444445555555555555555544431 1122333444444445555555555555555554322221 11111111
Q ss_pred HHHccCCHHHHHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009556 331 CLGELGKWDVIKKNFENMKDRGH--GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (532)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555433111 0111222222222334444444444444444332110233344444444444445
Q ss_pred HHHHHHHHHhcc
Q 009556 409 EQTVKVLQLMEP 420 (532)
Q Consensus 409 ~~A~~~~~~m~~ 420 (532)
+.|...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.75 E-value=5.7 Score=31.68 Aligned_cols=79 Identities=9% Similarity=-0.125 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
-.....+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.|++++|...+++..+..+.....-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445577888888888888876521 2234555667888888888888888888888776544445666666665543
Q ss_pred C
Q 009556 196 G 196 (532)
Q Consensus 196 ~ 196 (532)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.68 E-value=3.3 Score=34.82 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL--VMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
+..+..-|.+.|+.+.|.+.+.++.+....+.. ..+-.+|+.....+++..+.....+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445555566666666666666665554322222 234455555566666666665555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=9.1 Score=33.26 Aligned_cols=189 Identities=18% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCChHHHHH
Q 009556 126 GRTLEADAIFQEMVCFGFN-PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-GICRNQETYEILLDYHVNAGRLDDTWL 203 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 203 (532)
+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433211 12344555555555566666665555555431 122333444455555555555666666
Q ss_pred HHHHHHHCCCCcCHHhHHHHHH-HHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 204 IINEMRSKGFQLNSFVYGKVIG-LYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 204 ~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555443222 111111112 45555666666666655543211 01222222223334445555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 281 ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 281 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
.........+..+...+...++++.|...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 31110233444445555555555555555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.04 E-value=7.8 Score=31.92 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=47.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-hHHHH--HHHHHcCCChH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-VYGKV--IGLYRDNGMWK 234 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--l~~~~~~~~~~ 234 (532)
+.+..++|+.-|..+.+.|...-++ ..--......+.|+...|...|++.-.....|-.. -...| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555543321111 11112223344555555555555554432222211 00000 11223444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
......+-+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444333332222222333344444445555555555554443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.0046 Score=50.27 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (532)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 416 (532)
..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444444444555555444333344445555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.63 Score=26.94 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
|+.|...|.+.|++++|.+++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.84 E-value=7.5 Score=36.06 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCCHH-HHH-
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMG-----LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPDIV-TWN- 291 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-~~~- 291 (532)
+..++...+.++++++.|+...+.. ......++..|...|.+..|+++|.-+..+..+. ++. |.. -|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 4445555555566655555554321 1122345666666666666666665544433221 111 111 111
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 292 ----SLIRWHCKAGDVAKALELFTQMQ----EQGFYP-DPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 292 ----~li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
.|.-++-..|....|.+.-++.. +.|-.+ -......+.+.|...|+.+.+..-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23334555566555555555432 233222 1233445555666666666666655554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.84 E-value=17 Score=35.52 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
..++...-+..+.+.-+++-.+..+. .||- ..|..|.. -......+|.++|++..+.|- ...--..... .
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE--~~lg~s~~~~---~ 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE--ASLGKSQFLQ---H 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH--Hhhchhhhhh---c
Confidence 35566666778888888887777765 3432 22322221 123456788888888776441 0000000000 0
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHcCCChHHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
.|. .++.+......+-..+-..+...+-+.|+.++|.+.+.+|.+.... -.......|+.++...+.+.++..
T Consensus 243 ~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 111 1111111111122223344555666778888888888887654322 133456677777777788887777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHH
Q 009556 239 IVEEIREMGLSL-DRQIYNSII 259 (532)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~~~li 259 (532)
++.+..+...+. -...|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 777765433222 233455433
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.14 E-value=26 Score=36.40 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-------TLEADAIFQEMVCFGFNPKLR 148 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~~~~~g~~~~~~ 148 (532)
+...| .+|-.|.|+|++++|.++..+.... .......+...+..+....+ -++...-|++..+.....|+.
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 6788889999999999999555443 34455667777888776532 234555555555443222432
Q ss_pred ---hHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCcCHH--HHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCC
Q 009556 149 ---FYNILLRGFLKKGLLGLGS-RLLMVMEDMGICRNQE--TYEILLDYHVNAG---------RLDDTWLIINEMRSKGF 213 (532)
Q Consensus 149 ---~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~--~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~ 213 (532)
+|..+ +++.-...-. .+. .+.. .|-.|.-.-.... .+++..+.+.+.-+..+
T Consensus 189 K~AvY~il----g~cD~~~~~~~~V~---------~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F 255 (613)
T PF04097_consen 189 KRAVYKIL----GRCDLSRRHLPEVA---------RTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHF 255 (613)
T ss_dssp HHHHHHHH----HT--CCC-S-TTC-----------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGC
T ss_pred HHHHHHHH----hcCCccccchHHHh---------CcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhc
Confidence 22222 2222111000 111 1111 2222211111110 11222222222222223
Q ss_pred CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHH
Q 009556 214 QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNS 292 (532)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ 292 (532)
.+ ..........+.-.|++|.|.+.+-. ..+...+.+.+...+..|.-.+-.+... ..+.... -.|....+..
T Consensus 256 ~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~ar 329 (613)
T PF04097_consen 256 NA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFAR 329 (613)
T ss_dssp TT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHH
T ss_pred cc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHH
Confidence 33 11122334455678889999888766 2222345555555554443222211111 2222110 0111255777
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHC
Q 009556 293 LIRWHCKA---GDVAKALELFTQMQEQ 316 (532)
Q Consensus 293 li~~~~~~---g~~~~A~~~~~~m~~~ 316 (532)
||..|.+. .++.+|++++--+...
T Consensus 330 LI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 330 LIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 88888773 4677888887766543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.6 Score=30.69 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.55 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=12.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEAD 132 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~ 132 (532)
+-|..+|+.+...+...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.2 Score=31.36 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.82 E-value=4 Score=40.41 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 252 RQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
..-|..|.++..+.+++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33444455555555555555444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.75 E-value=7 Score=35.49 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 009556 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES---IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK 323 (532)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 323 (532)
|.+.+..+...++..-....+++++...+-++.... ..|+...+ +.++.+ -.-++++++.++..=..-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 333344444444444444555666666555554320 11111111 122222 2235556666666656666666666
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
+++.+++.+.+.+++.+|.++...+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666666665555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.58 E-value=9.4 Score=34.70 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
+.++++.++..=+..|+-||..+++.+++.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455666666655666666666666666666666666666666555444
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.11 E-value=14 Score=33.32 Aligned_cols=146 Identities=10% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChHhHHHHHHHHHh-cC-ChhHHHHHHHHHHHc-CCCcCHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVC-FGFNPKLRFYNILLRGFLK-KG-LLGLGSRLLMVMEDM-GICRNQETYEILLD 190 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-~~~~~~~~~~~li~ 190 (532)
|..++. ++....+|+.+|+.... ..+--|..+-..+++.... .+ ....-.++.+-+... +..++..+-..++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 444443 33445667777763221 2234566666666666655 22 222233333333322 34467777778888
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHcCCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHh
Q 009556 191 YHVNAGRLDDTWLIINEMRSK-GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE-----IREMGLSLDRQIYNSIIDTFG 263 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~ 263 (532)
.+++.+++..-+++++..... +..-|...|...|+...+.|+..-..++.++ +.+.++..+...-.++-..+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888888888888888877655 5556788888888888888887766666553 234456666665555554443
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=88.06 E-value=18 Score=37.11 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..|..-+..+..+++.. ....+.+..+-...+...-..++..|.+.|..+.|.++.+.+-..-+ ...-|..-+.-+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34555555555444333 45555554443344555566677777777777777777665543311 123345555566
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCCHHHHHH---------------HHHH---HHhcCCcChHHHHHHHHHhCCCCC
Q 009556 438 GVAGKYKEALSVYHLMKDI----GISPDLVTYST---------------LMKA---FIRAKKFHKVPEIYKQMESSGCTP 495 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~---------------l~~~---~~~~g~~~~a~~~~~~m~~~g~~p 495 (532)
.++|+......+-+.+.+. |...+....+. -..- ..+.|++.+|.+.+-.+.+.++.|
T Consensus 449 ~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~P 528 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAP 528 (566)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCc
Confidence 6666666655544444321 21111111111 1111 134588888888888888889999
Q ss_pred CHHHHHHHHHHHHHHhhhhhcc
Q 009556 496 DRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 496 ~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
...-...|.+++--++..+...
T Consensus 529 k~f~~~LL~d~lplL~~~~~~f 550 (566)
T PF07575_consen 529 KSFWPLLLCDALPLLESDEVIF 550 (566)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhCCCCCcc
Confidence 9988888888887777644443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.78 E-value=14 Score=30.22 Aligned_cols=68 Identities=25% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISY-ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
.+.++.+++..+++.+.-. .|..... ..-...+...|++.+|..+|+++.+.+ |.......|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 4567888888888877765 4443332 223345667788888888888876543 444444455555444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.67 E-value=38 Score=35.16 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=72.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHP---SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
--|+.+.+.+.+++|++..+.-... .+ -...+...|..+...|++++|-...-.|.. .+..-|...+.-+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc
Confidence 3477888999999999888765543 33 234677888999999999999999888873 56666777776666
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
..+..... +.-++......+...|..++..+..
T Consensus 435 e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 435 ELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 66654433 2233333223456678888887776
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.29 E-value=43 Score=35.40 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=115.1
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 009556 262 FGKYGELVEALEVFEKMQQESIRPD-------IVTWNSLIRW-HCKAGDVAKALELFTQMQEQ----GFYPDPKIFITII 329 (532)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~ll 329 (532)
.....++++|..++.++...-..|+ ...|+.+-.. ....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888888887765422221 1234433222 23467889999888876643 2333455566667
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHhH---HHHH--HHHHHhcCCcc--cHHHHHHHHHHcC--CCC----CHHHHH
Q 009556 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAI---YAIL--VDIYGQYGRFR--DPEECIAALKLEG--LQP----SGSMFC 396 (532)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~~~--~a~~~~~~~~~~~--~~~----~~~~~~ 396 (532)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+...|+.. +.+..|....... -.| -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999988877765422222222 2222 22344456322 2223333332211 011 122344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhccCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 009556 397 ILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVML--NVLINAFGVAGKYKEALSVYHLMKDIGISP----DLVTYSTLM 469 (532)
Q Consensus 397 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~ 469 (532)
.++.++.+. +...++..-+.--......|-...+ ..|+......|+.++|...++++......+ +-..-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1122222222222222222222222 266778888999999999999887543332 222222233
Q ss_pred HHH--HhcCCcChHHHHHHH
Q 009556 470 KAF--IRAKKFHKVPEIYKQ 487 (532)
Q Consensus 470 ~~~--~~~g~~~~a~~~~~~ 487 (532)
+.. ...|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 322 245666666555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.83 E-value=1.1 Score=25.24 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
+|..+..+|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.87 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.175 Sum_probs=13.1
Q ss_pred CCChHhHHHHHHHHHhcCChhHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
+.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.66 E-value=6.6 Score=28.69 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555556666666677777777777777777777777777776653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.66 E-value=2 Score=24.18 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
+|..+...|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.35 E-value=6.4 Score=33.74 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRG 156 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~ 156 (532)
.+..++.+.+.+.+.+|+...+.-.+.. +.|...-..+++.+|-.|++++|..-++..-+.. ..+...+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4566778888899999998888766663 5566677788899999999999887777665432 23445666666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.80 E-value=5.5 Score=36.54 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=56.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
-+.|.++|.+++|++.|....... +.|++++..-..+|.+..++..|..-.......+ ..-+..|.--+.+--..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456889999999999998877653 3488999989999999988887777666655422 11112222222222233445
Q ss_pred hHHHHHHHHHHH
Q 009556 164 GLGSRLLMVMED 175 (532)
Q Consensus 164 ~~A~~~~~~m~~ 175 (532)
.+|.+=++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555554444444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.4 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.3 Score=25.20 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777664
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.68 E-value=16 Score=36.51 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=112.7
Q ss_pred CCChhhHHHHHHH-----HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 009556 74 EFSGNSYNKSIQY-----CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148 (532)
Q Consensus 74 ~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~ 148 (532)
+.++..|..++.. ..-.|+++.|..++..+.+ ..-+.++.-+-++|-.++|+++-. .||.
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s~-------D~d~- 642 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELST-------DPDQ- 642 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcCC-------Chhh-
Confidence 3455555444433 3456888888876655542 234566777778888887776521 2221
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
-.....+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+..+ |..|+-.+.
T Consensus 643 ----rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t 703 (794)
T KOG0276|consen 643 ----RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYT 703 (794)
T ss_pred ----hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhh
Confidence 123445779999998876554 3667899999999999999999999987654 456777788
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
..|+.+....+-....+.|.. |. . .-+|...|+++++.+++..-.
T Consensus 704 ~~g~~~~l~~la~~~~~~g~~-N~-A----F~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLAKKQGKN-NL-A----FLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hcCChhHHHHHHHHHHhhccc-ch-H----HHHHHHcCCHHHHHHHHHhcC
Confidence 888877776676777766642 32 2 234667899999999886653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.57 E-value=23 Score=30.55 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=76.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CcCHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI-CRNQETYEILLD 190 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~ 190 (532)
+..||-+.--+...|+++.|.+.|+...+....-+-...|--| ++.--|++..|.+=|...-+.+. .|=...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4567777777777777777777777777654222222222222 22234677777665555444321 122223332222
Q ss_pred HHHhcCChHHHHHH-HHHHHHCCCCcCHHhHHHHHHHHH-cCCChHHHHHHHHHHHHcCC------CCCHHHHHHHHHHH
Q 009556 191 YHVNAGRLDDTWLI-INEMRSKGFQLNSFVYGKVIGLYR-DNGMWKKAVGIVEEIREMGL------SLDRQIYNSIIDTF 262 (532)
Q Consensus 191 ~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~~ 262 (532)
..-++.+|..- .++.... |..-|...|-.+. ..=..+. +++.+....- +.=..+|--+.+-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 23345555433 3333332 4333433332222 1111111 2222221110 00134677777788
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 009556 263 GKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (532)
...|+.++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8888888888888777665
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=85.55 E-value=35 Score=35.10 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 308 ELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
..++.+...-...+......++..|.+.|-.+.+..+.+.+-.+-. ...-|..-+..+.++|+...+..+.+.+
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333443332333555666777777777777777777665543321 1223445555556666655544444433
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.18 E-value=2.2 Score=25.29 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQ 104 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (532)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666665544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.73 E-value=1.2 Score=27.18 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009556 433 LINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.68 E-value=2.8 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
|..+-..+.+.|++++|++.|++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445555666666666666666665544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.64 E-value=12 Score=31.85 Aligned_cols=74 Identities=5% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCcChHH
Q 009556 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI---GISPDLVTYSTLMKAFIRAKKFHKVP 482 (532)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (532)
-+.|.+.|-.+...+.--++.....|...|. ..+.++|..++.+..+. +-.+|+..+.+|++.+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3556666666665554444444444443333 55667777776666532 23566777777777777777776653
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.29 E-value=32 Score=31.27 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEAL 447 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~ 447 (532)
.+|..|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45667777777777665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=36 Score=31.16 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=49.2
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 216 NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG-ELVEALEVFEKMQQESIRPDIVTWNSLI 294 (532)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li 294 (532)
+..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.++.+.+ +.+.+...+..+... ++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 33444444444444444 2333333333331 23333333444444332 123344444333322 2444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.++.+.|+ ..|+..+-+..+.+. .....+.++...|.. ++...+..+.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555554 234443333333221 123444555555553 34444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.88 E-value=21 Score=30.33 Aligned_cols=107 Identities=11% Similarity=0.050 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----ChHhHHHHHHHHHhcCChhHHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP----KLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
-+.++.-.+.+...| .-+.+.|++++|..-|...++.-.+. ....|..-..++.+.+.++.|+.
T Consensus 88 k~k~~~kad~lK~EG------------N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEG------------NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHHHHHHHHHH------------HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 344555555555543 34567888888888888887653111 12345555567778888888888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
-..+..+.+. .......--..+|.+...+++|++-|+.+.+..
T Consensus 156 dcsKaiel~p-ty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 156 DCSKAIELNP-TYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHhhHhcCc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 7777777543 122233334557888888899999888888763
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.85 E-value=10 Score=28.10 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
-+..+-+..+....+.|+.....+.+++|.+.+++.-|.++|+-.+.+ ..+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 355555666666667778888888888888888888888888776543 2222225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.84 E-value=38 Score=31.01 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=63.0
Q ss_pred cCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh-----HHHHHHHHHHHHcCCCC
Q 009556 180 RNQETYEILLDYHVNAGRL----DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW-----KKAVGIVEEIREMGLSL 250 (532)
Q Consensus 180 ~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~ 250 (532)
+|...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 3444444455555555542 3455555544322 23444444444444433211 122222222222 22
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG-DVAKALELFTQMQEQGFYPDPKIFITII 329 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll 329 (532)
+..+-...+.++++.++ +++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555555655555 3444444444432 23333333344444332 13344444444442 33555555555
Q ss_pred HHHHccCC
Q 009556 330 SCLGELGK 337 (532)
Q Consensus 330 ~~~~~~~~ 337 (532)
.++.+.++
T Consensus 214 ~aLg~~~~ 221 (280)
T PRK09687 214 IGLALRKD 221 (280)
T ss_pred HHHHccCC
Confidence 56666555
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.19 E-value=22 Score=30.28 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCChH
Q 009556 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQETYEILLDYHVNAGRLD 199 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~ 199 (532)
.+.|+ +.|.+.|-.+...+.-.++.....|...|. ..+.+++..++-...+. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 678888888887775556666666666665 57788888888877654 33578888999999999999988
Q ss_pred HHH
Q 009556 200 DTW 202 (532)
Q Consensus 200 ~a~ 202 (532)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=82.03 E-value=45 Score=31.26 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=58.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHH----cCCCCCHHHHH--
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGH-----GKIGAIYAILVDIYGQYGRFRDPEECIAALKL----EGLQPSGSMFC-- 396 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~-- 396 (532)
+..+....+.++++.+.|+...+... .....++..|...|.+..++++|.-+.....+ .++.....-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33344444455555555555443211 11234455566666666666655544333221 12221111122
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhc----cCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 397 ---ILANAYAQQGLCEQTVKVLQLME----PEGIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 397 ---~li~~~~~~g~~~~A~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+.-++...|..-.|.+.-++.. ..|-.+ -....-.+.+.|...|+.+.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22334555555555544444332 222111 12234456667777788877777776543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.56 E-value=67 Score=32.94 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHH--HHH-HHhcCChHHHHHHHHHHHH-------CCCCcCHHhHHHHHHHHHcCC-
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEIL--LDY-HVNAGRLDDTWLIINEMRS-------KGFQLNSFVYGKVIGLYRDNG- 231 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~l--i~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~- 231 (532)
...|.+.++...+.|.. ........ ..+ +....+.+.|+..|+.... .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888887776531 11111111 122 4466788999999988866 44 3335556666666643
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCC
Q 009556 232 ----MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC----KAGD 302 (532)
Q Consensus 232 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~ 302 (532)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 56778888888887763 344444333333333 34677888888888877653 22222222221 2236
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
.+.|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+...+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 788888888888877 3332222333334444 66666666666665554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.24 E-value=27 Score=28.13 Aligned_cols=53 Identities=23% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
...++++++..+++.|.-. .|+..- -..-...+...|++.+|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4578888888888887765 444332 2223345667888888888888887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.75 E-value=44 Score=30.31 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
...+.|...|.+.+|.++.+.....+ +.+...+-.++..+...||--+|.+.++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456666777777777776666654 4455666666666666666555555555543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.44 E-value=29 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=21.3
Q ss_pred cCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 370 YGRFRDPEECIAALKLEGLQ-PSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
.++.+++..+++.+.-..+. +...++. ...+...|++++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555433111 1111221 22234455555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.16 E-value=0.59 Score=37.77 Aligned_cols=82 Identities=13% Similarity=-0.007 Sum_probs=46.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+|+.+.+.+.+..+...++.+...+...+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666666677777777777777665455566777777777777666666665551 111222344455555555
Q ss_pred hhHHHHHHH
Q 009556 163 LGLGSRLLM 171 (532)
Q Consensus 163 ~~~A~~~~~ 171 (532)
+++|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 1e-14
Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 4/197 (2%)
Query: 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI 258
+ + R +++ + + LS +Q +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 259 IDTFGKYGELVEA---LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315
+L A L V +Q+ + +N+++ + G + + + +++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 316 QGFYPDPKIFITIISCLGELGK-WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374
G PD + + C+G + I++ E M G A+L+ + +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 375 DPEECIAALKLEGLQPS 391
+ L P
Sbjct: 254 AVHKVKPTFSLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 5e-12
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 4/153 (2%)
Query: 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407
+ A L+ + L
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 408 CEQTVKVLQL---MEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVT 464
+L + + L M N ++ + G +KE + V ++KD G++PDL++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 465 YSTLMKAFIRAKKFHKVPEIY-KQMESSGCTPD 496
Y+ ++ R + E +QM G
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 2e-11
Identities = 35/351 (9%), Positives = 95/351 (27%), Gaps = 21/351 (5%)
Query: 65 SPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124
+ E + +Q +D A Q + +
Sbjct: 80 EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139
Query: 125 VGRTLEADAIFQ---EMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN 181
+ A + L YN ++ G+ ++G +L +++D G+ +
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199
Query: 182 QETYEILLDYHVNAGRLDDT-WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240
+Y L + T + +M +G +L + ++ + K +
Sbjct: 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
Query: 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300
+ ++ V ++ ++ + + +
Sbjct: 260 PTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL-----FEKQLHMELAS 314
Query: 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360
++E T ++ + + L + +++ ++ + ++Y
Sbjct: 315 RVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA--LRETKNRLEREVYEGRFSLY 372
Query: 361 AILVDIYGQYGRFRDPEEC--IAALKLEGLQPSGSMFCILANAYAQQGLCE 409
L + D E + L+ L G F LA + +
Sbjct: 373 PFLCLL--------DEREVVRMLLQVLQALPAQGESFTTLARELSARTFSR 415
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 3e-10
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 3/112 (2%)
Query: 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448
P L + + + L + + A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 449 V---YHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497
+ +H + L Y+ +M + R F ++ + ++ +G TPD
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 3e-10
Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 4/231 (1%)
Query: 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330
A + + +Q P L++ + Q + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 331 CLGELGKWD---VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
C + + + + +Y ++ + + G F++ + +K G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 388 LQPSGSMFCILANAYAQQGLCEQTV-KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
L P + +Q T+ + L+ M EG++ + VL++ A K
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497
V P V S L++ P+++ +++ C ++
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-12
Identities = 63/419 (15%), Positives = 136/419 (32%), Gaps = 91/419 (21%)
Query: 134 IFQEMVCFGFNPKLRFYNI--LLRGFLKKG----LLGLGS------RLLMVMEDMGICRN 181
+F++ F ++ + + L K ++ RL + +
Sbjct: 24 VFED----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQ 75
Query: 182 QETYEILLDYHVNAGRLDDTWL---IINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK-AV 237
+E + ++ R++ +L I E R ++ + LY DN ++ K V
Sbjct: 76 EEMVQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNV 131
Query: 238 GIVEEIREM--GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295
++ ++ L R N +ID G+ AL+V + + + W +L
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK 355
+ + +L Q+ + + I + + + +K + +
Sbjct: 192 CNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAE---LRRL--LKSKPYEN 245
Query: 356 IGAIYAILV--DIYGQYGRFRDPEECIAALKLEGLQPSGSMFC-ILA---NAYAQQGLCE 409
+LV ++ + + A L C IL L
Sbjct: 246 -----CLLVLLNVQ-------NA-KAWNAFNLS---------CKILLTTRFKQVTDFLSA 283
Query: 410 QTVKVLQLME-PEGIEPNLVMLNVLINAFGVAGKY--KEALSVYHLMKDIGISPDLVTYS 466
T + L + P+ V ++L+ + +E L+ +P +
Sbjct: 284 ATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLT---------TNPRRL--- 330
Query: 467 TLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL---EQRRCKQRLDIF 522
+++ IR + +K + K I++S+L VL E R+ RL +F
Sbjct: 331 SIIAESIR--DGLATWDNWKHVNCD------KLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 6e-09
Identities = 84/581 (14%), Positives = 168/581 (28%), Gaps = 182/581 (31%)
Query: 11 PIHGTSPLSVFFSTHSSSREHAGHKLNSSCHS----------GMRRCVKEGYAYS-LGNK 59
++ + + F+ ++ SR KL + G+ K A +
Sbjct: 118 RLYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 60 NLSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119
+ K I + L + + +L +Q L + ++ S
Sbjct: 175 KVQCKMDFK---------------I-FWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179
+ N KLR ++I + L RLL
Sbjct: 218 D--------------------HSSNIKLRIHSI------QAEL----RRLLK-------- 239
Query: 180 RNQETYEI-LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238
+ YE LL L + N F L+ K++ R +
Sbjct: 240 --SKPYENCLLV-------LLNVQ---NAKAWNAFNLSC----KILLTTRFKQVTDFLSA 283
Query: 239 -----IVEEIREMGLSLD--RQIYNSIIDTFGKYGEL-VEALEVFE---KMQQESIRPDI 287
I + M L+ D + + +D + +L E L + ESIR +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 VTWNSLIRW-HCKAGDVAKALELFTQMQE----QGFYPDPKIF-----ITII-------- 329
TW+ W H + +E + E + + +F I I
Sbjct: 342 ATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 330 -------SCLGELGKWDVIKKNFENMKDRGHG----------KIGAIYAILVDIYGQYGR 372
+ +L K+ +++K + A++ +VD Y +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPK 457
Query: 373 FRDPEECIAALKLEGLQPSGSMFCILANAY----AQQGLCEQTVKVLQLMEPEGIEPNLV 428
D ++ I + + + + +++ L +
Sbjct: 458 TFDSDDLIP------PYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFL--------DFR 501
Query: 429 MLNVLINAFGVAGKYKEALSVYHLMKDIG-----ISPDLVTYSTLMKAFIRAKKFHKVPE 483
L I A + + S+ + ++ + I + Y L+ A + F +P+
Sbjct: 502 FLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DF--LPK 554
Query: 484 IYKQMESSGCTPDRKARQILQSAL------VVLEQRRCKQR 518
I + + S T +L+ AL + E + QR
Sbjct: 555 IEENLICSKYT------DLLRIALMAEDEAIFEEAHKQVQR 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 27/215 (12%), Positives = 78/215 (36%), Gaps = 17/215 (7%)
Query: 255 YNSIIDTFGKYGELVEALEVFEKM--QQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312
+ ++ G+ + + K+ Q I+ + + + + +A E + +
Sbjct: 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225
Query: 313 -MQEQGFYPDPKIFITIISCLGELGKWD-VIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370
+ + + L +WD V+K N+ + ++Y + ++
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285
Query: 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQ----TVKVLQLMEPEGIEPN 426
R E+ ++++ GL+ S + A+ + T K+L++ +P N
Sbjct: 286 DELRRAEDYLSSI--NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-DPY----N 338
Query: 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461
L + + + + +G+ + + + + P+
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISN--DLVDRHPE 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 8e-06
Identities = 65/404 (16%), Positives = 118/404 (29%), Gaps = 75/404 (18%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
L + + QA G P + + AS ++ + +
Sbjct: 340 ALETVQRLLP--VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ---------- 387
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL--DDTWLII 205
GL ++ + G + ET + LL A L D I
Sbjct: 388 --------------AHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 433
Query: 206 NEMRSKGFQ-LNSF-----VYGKVIGL-------YRDNGMWKKAVGIVEE-----IREMG 247
+ G Q L + V + GL + K+A+ V++ + G
Sbjct: 434 S--HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG 491
Query: 248 LSLDR-QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAK 305
L+ D+ S I + L V Q + PD +V S V +
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQR 549
Query: 306 ALELFTQMQEQGFYPDPKIFITII-SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364
L + Q G PD + I L + ++ AI + +
Sbjct: 550 LLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI- 606
Query: 365 DIYGQYGRFRDPEECIAAL-KLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ-----LM 418
G + + L + GL P+ A A +Q ++ +Q L
Sbjct: 607 ---GGKQALETVQRLLPVLCQAHGLTPA------QVVAIASHDGGKQALETVQRLLPVLC 657
Query: 419 EPEGIEPNLVM-LNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461
+ G+ P+ V+ + + L V + G++ +
Sbjct: 658 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTQE 699
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.35 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.06 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.87 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.79 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.56 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.46 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.15 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.77 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.37 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.37 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.37 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.13 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.34 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.02 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.95 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.82 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.79 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.31 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.42 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.75 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.39 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.35 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.13 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.11 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.1 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.81 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.69 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.38 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.1 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.95 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.12 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.03 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=324.83 Aligned_cols=431 Identities=10% Similarity=0.003 Sum_probs=369.3
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
+.++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|.++|+.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 3467889999999999999999999999999865 578899999999999999999999999988643 688999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHH-Hc--------------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVME-DM--------------GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~-~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 217 (532)
++.+|.+.|++++|.++|+++. .. +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 9999999999999999999532 21 22346889999999999999999999999999886432 33
Q ss_pred HhHHHH--------------------------------------HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 218 FVYGKV--------------------------------------IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 218 ~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
..+..+ +..|.+.|++++|.++|+++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 333222 44556778899999999998876 57899999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
.+|.+.|++++|.++|+++.+.+.. +..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999876533 67789999999999999999999999998653 457888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 4568899999999999999999999999998764 4577889999999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 764 457889999999999999999999999999765 66787 7899999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhc
Q 009556 494 TPDRKARQILQSALVVLEQRRCK 516 (532)
Q Consensus 494 ~p~~~t~~~l~~a~~~~~~~~~~ 516 (532)
+.+..++..+..++...++.+.+
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHH
Confidence 33788899999999888775544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=311.82 Aligned_cols=420 Identities=12% Similarity=0.036 Sum_probs=365.6
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-C----------
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC-F---------- 141 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~---------- 141 (532)
..|+..+|+.++..|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|.++|+++.. .
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 3567789999999999999999999999998654 68899999999999999999999999995322 1
Q ss_pred ----CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH-----------------------------
Q 009556 142 ----GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL----------------------------- 188 (532)
Q Consensus 142 ----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----------------------------- 188 (532)
|.+++..+|+.++.+|.+.|++++|.++|+++.+.+. .+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2334688999999999999999999999999988653 233333333
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 189 ---------LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 189 ---------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
+..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|.++|+++.+.+ +.+..+++.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 55566788999999999998876 5799999999999999999999999999999876 34778899999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 3478899999999999999999999999998753 346889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 5678899999999999999999999999998875 4578899999999999999999999999997
Q ss_pred cC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 420 PE----GIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 420 ~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+ +
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--I 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c
Confidence 65 56777 7899999999999999999999999998864 34889999999999999999999999999998 5
Q ss_pred CCCH-HHHHHHHH
Q 009556 494 TPDR-KARQILQS 505 (532)
Q Consensus 494 ~p~~-~t~~~l~~ 505 (532)
.|+. ..+..+.+
T Consensus 580 ~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 580 SPNEIMASDLLKR 592 (597)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 6654 44444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-31 Score=260.84 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 98 ALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.+.+++.+++....+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 3444444444433332 34555555555555555555555555555555555555555555544432110
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (532)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0112245566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-27 Score=231.15 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=295.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556778899999999999988774 4556677778888889999999999999888765 5678899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+++|.+.|+++.+..+ .+..+|..+...+.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999887542 45667889999999999999999999998876322 455667777888888999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
+.+.. +.+..+|+.+...+.+.|++++|...|+++.+.+. .+...|..+...+...|++++|...+++..+.. +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 88764 34677888888888888999999988888877543 256778888888888888888888888877653 2356
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (532)
.++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 777778888888888888888888887764 4456677777788888888888888888777664 45667777777777
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009556 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (532)
...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 77788888888877777653 4456677777777777777788877777777642 224555666665555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=260.61 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCChH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---------TLEADAIFQEMVCFGFNPKLR 148 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~~~A~~~~~~~~~~g~~~~~~ 148 (532)
..++.+|++|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46889999999999999999999999999999999999999999997765 577888888888888888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
+.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888777778888887777777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-27 Score=226.62 Aligned_cols=380 Identities=14% Similarity=0.052 Sum_probs=328.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+... .+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 3566778999999999999998765 45667788888999999999999999999887643 678899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
+++|.+.|+++.+... .+..++..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999987632 256689999999999999999999999999875 33566788888999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 009556 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (532)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (532)
+.+... .+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+.+..+.. +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 987633 367889999999999999999999999999864 3357788899999999999999999999998875 4568
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
.++..+...|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+++.+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 889999999999999999999999999865 3457789999999999999999999999998764 66889999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVV 509 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~ 509 (532)
...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+ +.|+ ...+..+...+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 99999999999999998752 34678899999999999999999999999997 5664 4455555554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-24 Score=214.68 Aligned_cols=414 Identities=10% Similarity=-0.012 Sum_probs=328.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|-.....+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4456778888999999999999999999885 799999999999999999999999999999876 5677899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------------------
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------------------------- 211 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------- 211 (532)
+.+.|++++|...|+++...+. ++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998764 34444444444444333222222222111100
Q ss_pred ----------CC---------CcCHHhHHHHHHHHHc---CCChHHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 009556 212 ----------GF---------QLNSFVYGKVIGLYRD---NGMWKKAVGIVEEIRE-----MGL--------SLDRQIYN 256 (532)
Q Consensus 212 ----------~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 256 (532)
.. +.+...+......+.. .|++++|...++++.+ ..- +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1113344444444444 8999999999999988 311 22356788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
.+...+...|++++|...|+++.+... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999987643 38888999999999999999999999998764 346678888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (532)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 416 (532)
++++|...++.+.+.. +.+...+..+...|...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 4467788999999999999999999999998764 3356778899999999999999999999
Q ss_pred HhccCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 417 LMEPEGI-EPN----LVMLNVLINAFGV---AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 417 ~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
++.+... .++ ...+..+...+.. .|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8875421 111 3488899999999 999999999999998753 346778899999999999999999999999
Q ss_pred HhCCCCCCHHHHHH
Q 009556 489 ESSGCTPDRKARQI 502 (532)
Q Consensus 489 ~~~g~~p~~~t~~~ 502 (532)
.+ +.|+......
T Consensus 476 ~~--~~~~~~~~~~ 487 (514)
T 2gw1_A 476 AD--LARTMEEKLQ 487 (514)
T ss_dssp HH--HCSSHHHHHH
T ss_pred HH--hccccHHHHH
Confidence 98 5676554433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-22 Score=196.66 Aligned_cols=315 Identities=10% Similarity=0.051 Sum_probs=183.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777788888888888888888877663 4567777888888888888888888888887765 44567777778
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQ---ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.+|.+.|++++|.+.|+++.+... .+. ..+..+...+... .+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 888888888888888887776432 233 4555554442111 1112233445556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665543 2355566666666666666666666666665432 1245666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCCccc
Q 009556 312 QMQEQGFYPDPKIFITI------------ISCLGELGKWDVIKKNFENMKDRGHGKI----GAIYAILVDIYGQYGRFRD 375 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 375 (532)
++.+.. +.+...+..+ ...+.+.|++++|...++.+.+.... + ...+..+..++.+.|++++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHH
Confidence 665432 1122222222 44445555555555555555443211 1 2234444555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 376 PEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
|...++.+.+.. +.+...|..+..+|...|++++|.+.++++.+
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555544432 22344455555555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-22 Score=196.20 Aligned_cols=393 Identities=13% Similarity=0.066 Sum_probs=279.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 009556 94 DEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (532)
..+...+.++.... +.+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444455544432 4556677777777777788888888887777653 456677777777777777777777777777
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH---HhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 009556 174 EDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS---FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (532)
Q Consensus 174 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (532)
.+.+. .+..++..+...|.+.|++++|.+.|+++.+.... +. ..+..+...+..
T Consensus 87 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH---------------------
Confidence 76543 35667777777777777777777777777665221 22 333333333211
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 330 (532)
..+..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1223345568889999999999999987533 378889999999999999999999999998753 446889999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHH------------HHHHHhcCCcccHHHHHHHHHHcCCCCC----HHH
Q 009556 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAIL------------VDIYGQYGRFRDPEECIAALKLEGLQPS----GSM 394 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 394 (532)
.+...|++++|...++.+.+.. +.+...+..+ ...+.+.|++++|...|+.+.+.... + ...
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~ 297 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRS 297 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 9999999999999999998765 3445555555 88899999999999999999886422 2 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH--
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKA-- 471 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~-- 471 (532)
+..+...+.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|.+.++++.+. .| +...+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 8888999999999999999999988753 457899999999999999999999999999885 34 45566666533
Q ss_pred ----------HHhcC-----CcChHHHHHHHH-HhC--CCCCC-------HHHHHHHHHHHHHHhhhhhccccc
Q 009556 472 ----------FIRAK-----KFHKVPEIYKQM-ESS--GCTPD-------RKARQILQSALVVLEQRRCKQRLD 520 (532)
Q Consensus 472 ----------~~~~g-----~~~~a~~~~~~m-~~~--g~~p~-------~~t~~~l~~a~~~~~~~~~~~~~~ 520 (532)
|...| +.+++.+.++++ .+. ...|+ ...+..+..++-.+++.+...+-|
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd 448 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC----
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhcc
Confidence 33344 556778888863 332 11122 236777888888877776655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-22 Score=199.99 Aligned_cols=402 Identities=11% Similarity=0.052 Sum_probs=313.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35667888999999999999999999999875 5678999999999999999999999999999876 567889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCcCHHh----------
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQLNSFV---------- 219 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~---------- 219 (532)
++...|++++|.+.|+.+... |+ .....+..+...+...+|...++.+... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999744221 22 2222344555556667788888877442 11222221
Q ss_pred --------------------HHHHHHHHHc--------CCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhc
Q 009556 220 --------------------YGKVIGLYRD--------NGMWKKAVGIVEEIREMGLSLD-------RQIYNSIIDTFGK 264 (532)
Q Consensus 220 --------------------~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 264 (532)
...+...+.. .|++++|..+++++.+.... + ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 1111112111 24788999999999876422 2 2356677788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN 344 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 344 (532)
.|++++|...|++..+. .|+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999885 4567888899999999999999999999998764 34678899999999999999999999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC--
Q 009556 345 FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-- 422 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 422 (532)
++.+.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99999875 4457788999999999999999999999998875 3456788899999999999999999999886532
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 423 ---IEPNLVMLNVLINAFGVA----------GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 423 ---~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
.......+..+...+... |++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112233345556777888 99999999999998763 3467789999999999999999999999999
Q ss_pred hC
Q 009556 490 SS 491 (532)
Q Consensus 490 ~~ 491 (532)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 84
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-21 Score=194.32 Aligned_cols=375 Identities=9% Similarity=-0.038 Sum_probs=299.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
|+...|..+...|.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+.+.+.+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 578899999999999999999999999999875 5677899999999999999999999999999876 34555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----------------------------------cCC---------CcCHHHHHHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMED-----------------------------------MGI---------CRNQETYEILLD 190 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~-----------------------------------~~~---------~~~~~~~~~li~ 190 (532)
..+.+......+.+.+..+.. ... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 544443322222222211110 000 112444445555
Q ss_pred HHHh---cCChHHHHHHHHHHHH-----CCC--------CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 191 YHVN---AGRLDDTWLIINEMRS-----KGF--------QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 191 ~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
.+.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|...++++.+.... ...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 5554 8999999999999987 311 123567788889999999999999999999987543 888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 99999999999999999999999987643 366788999999999999999999999998864 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHh---cC
Q 009556 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQ---QG 406 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 406 (532)
.|++++|...++.+.+.. +.+...+..+...|...|++++|...++.+.+.... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998765 456788899999999999999999999998764321 11 3378899999999 99
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
++++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++.+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999988764 4577888999999999999999999999998853
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-19 Score=181.50 Aligned_cols=389 Identities=12% Similarity=0.111 Sum_probs=298.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+.+. .+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4567888899999999999999999999876 56889999999999999999999999999998754 577899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCCCHH------------
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM------GLSLDRQ------------ 253 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~------------ 253 (532)
+...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999643 32 2221 122233444455557777777777542 1112211
Q ss_pred ------------------HHHHHHHHHhcc--------CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHc
Q 009556 254 ------------------IYNSIIDTFGKY--------GELVEALEVFEKMQQESIRPD-------IVTWNSLIRWHCKA 300 (532)
Q Consensus 254 ------------------~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~ 300 (532)
....+...+... |++++|..+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 222233332222 4789999999998875332 2 23466777888999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
|++++|.+.+++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999986 4568888889999999999999999999999876 556888999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 009556 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG--- 457 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 457 (532)
+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998875 3355778899999999999999999999998764 4567789999999999999999999999987542
Q ss_pred --CCCCHHHHHHHHHHHHhc----------CCcChHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhhhhh
Q 009556 458 --ISPDLVTYSTLMKAFIRA----------KKFHKVPEIYKQMESSGCTP-DRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 458 --~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~a~~~~~~~~~ 515 (532)
.......+..+...+.+. |++++|...++++.+. .| +...+..+...+...++.+.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 111222344556677777 9999999999999974 34 56677788888877766444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-18 Score=165.13 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=210.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788888899999999999999988774 5567888889999999999999999999988764 446788888889
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGIC--RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (532)
.+...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999988875320 12333333321100 01122233444555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555443 2344555555555555555555555555555442 224455555555555666666666666555
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHccCCHHHHHHHHHHHHhcCCCCCH----hHHHHHHHHHHhcCCcccHH
Q 009556 314 QEQGFYPDPKIFI------------TIISCLGELGKWDVIKKNFENMKDRGHGKIG----AIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 314 ~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~ 377 (532)
.+.. +.+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5432 11222211 2244566777777777777777665422 22 22445667777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (532)
..++...+.. +.+...+..+...+...|++++|.+.++++.+.. +-+...+..+..+...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 7777777653 3356677777777888888888888888777653 3345555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-18 Score=162.65 Aligned_cols=334 Identities=13% Similarity=0.045 Sum_probs=255.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
|+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+... .+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 34567777788888888888888888887754 45677788888888888888888888888776542 35667777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
.+...|++++|...|++..+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888888888888888887765320 12222222221100 11233456788899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987643 377889999999999999999999999998763 457888999999999999999999999999
Q ss_pred HhcCCCCCHhHHH------------HHHHHHHhcCCcccHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 009556 349 KDRGHGKIGAIYA------------ILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTV 412 (532)
Q Consensus 349 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 412 (532)
.+.. +.+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8875 33344333 2367799999999999999999886533 33 23556788999999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
+.+++..+.. +.+..++..+...+...|++++|.+.|+++.+.. +-+...+..+..+....
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence 9999998763 4578899999999999999999999999999863 22466677776665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-16 Score=159.01 Aligned_cols=353 Identities=12% Similarity=0.043 Sum_probs=270.9
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 009556 76 SGNSYNKSIQYCCK----LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKL 147 (532)
Q Consensus 76 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~ 147 (532)
++..+..+-..|.. .+++++|+..|++..+.| ++..+..+...|.. .++.++|.++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45556667777777 788999999998888764 56777888888888 888999999998888754 55
Q ss_pred HhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 148 RFYNILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 148 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 667777788877 778889999998888764 56677777777776 778888988888888764 6677
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009556 220 YGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWN 291 (532)
Q Consensus 220 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (532)
+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777777 788888888888888765 56677777777775 778888888888887753 456666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCCHhHHHH
Q 009556 292 SLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL-----GKWDVIKKNFENMKDRGHGKIGAIYAI 362 (532)
Q Consensus 292 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (532)
.+...|.. .+++++|+++|++..+.| +...+..+...+... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 788888888888887654 455666666667666 78888888888888765 3556667
Q ss_pred HHHHHHhcC---CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 009556 363 LVDIYGQYG---RFRDPEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLIN 435 (532)
Q Consensus 363 li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (532)
+...|...| +.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776655 6778888888887753 45677777788877 788888888888887754 5667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCC
Q 009556 436 AFGV----AGKYKEALSVYHLMKDIGI 458 (532)
Q Consensus 436 ~~~~----~g~~~~A~~~~~~m~~~~~ 458 (532)
.|.. .+++++|...|++..+.+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8877 7888888888888877653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-16 Score=157.88 Aligned_cols=366 Identities=11% Similarity=0.005 Sum_probs=309.5
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh----cCChhHHH
Q 009556 96 AMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK----KGLLGLGS 167 (532)
Q Consensus 96 A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 167 (532)
+++.+....+. .++..+..+...+.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 35555555554 477788888888887 899999999999999864 56788888999998 89999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc----CCChHHHHHH
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD----NGMWKKAVGI 239 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~ 239 (532)
+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 66777888888888 789999999999998876 56778888888887 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFT 311 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 311 (532)
|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|.++|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 78888889999987 899999999999998864 66778888888886 789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-----CCcccHHHHHHH
Q 009556 312 QMQEQGFYPDPKIFITIISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY-----GRFRDPEECIAA 382 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 382 (532)
+..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|... ++.++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998764 45666677777776 889999999999998765 466777888888887 899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 009556 383 LKLEGLQPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKD 455 (532)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 455 (532)
..+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98865 4567777888888766 7899999999998764 67888899999998 8999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCcChHHHHHHHHHhCCCC
Q 009556 456 IGISPDLVTYSTLMKAFIR----AKKFHKVPEIYKQMESSGCT 494 (532)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 494 (532)
.| +...+..|...|.+ .+++++|.+.|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 75 57788889999988 89999999999999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-17 Score=163.23 Aligned_cols=407 Identities=9% Similarity=0.055 Sum_probs=296.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|..+|+++.+.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678999998 478999999999999999873 6678889999999999999999999999999764 68778877775
Q ss_pred HH-HhcCChhHHHH----HHHHHHHc-CCCc-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 156 GF-LKKGLLGLGSR----LLMVMEDM-GICR-NQETYEILLDYHVN---------AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 156 ~~-~~~g~~~~A~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
.. ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45688877765 77766543 4433 56688888877665 6889999999999988321111233
Q ss_pred HHHHHHHH-------------HcCCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHhcc----
Q 009556 220 YGKVIGLY-------------RDNGMWKKAVGIVEEIR------EMG---LSLD--------RQIYNSIIDTFGKY---- 265 (532)
Q Consensus 220 ~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 265 (532)
|....... ...++++.|..++.+.. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 33322211 12345677777766532 211 2333 24555555433221
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 009556 266 GEL----VEALEVFEKMQQESIRPDIVTWNSLIRWHCK-------AGDVA-------KALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 266 g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
++. +.|..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 46778888877652 2367788888887775 68877 89999999886322345788888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGHGKI-GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA-YAQQ 405 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 405 (532)
++..+.+.|++++|..+|+++.+.. +.+ ...|..++..+.+.|+.++|.++|++..+... .+...|...+.. +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHc
Confidence 8889999999999999999999864 223 35888888988899999999999999987532 222333322222 3468
Q ss_pred CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCcChHH
Q 009556 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPD--LVTYSTLMKAFIRAKKFHKVP 482 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~ 482 (532)
|+.++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999887753 34678899999999999999999999999987632 232 447888888888899999999
Q ss_pred HHHHHHHh
Q 009556 483 EIYKQMES 490 (532)
Q Consensus 483 ~~~~~m~~ 490 (532)
++++++.+
T Consensus 484 ~~~~r~~~ 491 (530)
T 2ooe_A 484 KVEKRRFT 491 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-18 Score=158.77 Aligned_cols=292 Identities=11% Similarity=-0.068 Sum_probs=224.1
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455567788888899999999999999988775 4566677788888899999999999999998765 4567888889
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 154 LRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 154 i~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
...+...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 89999999999887643 45678888889999999999999999988876432 45666678888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES--------IRPDIVTWNSLIRWHCKAGDVA 304 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~ 304 (532)
+++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888764 3467778888888888888888888888776531 1233567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HhcCC
Q 009556 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY-GQYGR 372 (532)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 372 (532)
+|.+.+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 8888888877653 2355667777777777888888888877776654 34566666666666 33443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-18 Score=159.50 Aligned_cols=301 Identities=9% Similarity=-0.048 Sum_probs=172.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+... .+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 3455566666777777777777777777776654 34455566666666777777777777777666432 345566666
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 189 LDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 189 i~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
...+...| ++++|.+.|++..+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 66666666 666677666666654321 344555566666666666666666666655432 233444445555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFEN 347 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (532)
+++|.+.+++..+... .+...+..+...+...|++++|...+++..+..... +.
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~---------- 228 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI---------------GN---------- 228 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT---------------SC----------
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc---------------cc----------
Confidence 5555555555554322 234455555555555555555555555544320000 00
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH
Q 009556 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (532)
....+....++..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+.
T Consensus 229 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 304 (330)
T 3hym_B 229 --EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDT 304 (330)
T ss_dssp --SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCH
T ss_pred --cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCch
Confidence 00012234556666666666666666666666666543 2345566677777777777777777777776653 3355
Q ss_pred HHHHHHHHHH-HhcCCH
Q 009556 428 VMLNVLINAF-GVAGKY 443 (532)
Q Consensus 428 ~~~~~li~~~-~~~g~~ 443 (532)
..+..+..++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 6666666666 344443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=160.43 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=155.5
Q ss_pred HHHcCChHHHHH-HHHHHHHcCC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 87 CCKLGDIDEAMA-LLAQMQALGF-HP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 87 ~~~~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...|++++|++ .|++...... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888887 7776554321 11 34567788888888899999999998888765 5567788888888888899
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHH---------------HHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK---------------VIGLY 227 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~ 227 (532)
+++|.+.|+++.+... .+..++..+...+...|++++|.+.++++...... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999988888887653 46778888888888888999998888888876432 2222211 12222
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
...|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+... .+...|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 25556666666666655543211 355555555566666666666666655554321 2345555555555556666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 307 LELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.+.++++.+.. +.+...+..+...+.+.|++++|...++.+.+
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66665555432 22344555555555555555555555555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-16 Score=155.31 Aligned_cols=403 Identities=10% Similarity=0.069 Sum_probs=290.1
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009556 100 LAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179 (532)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 179 (532)
|++..+.. +-+...|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|+++.|.++|++.....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44544443 5578899999984 78999999999999999764 5677889999999999999999999999998854
Q ss_pred cCHHHHHHHHHHH-HhcCChHHHHH----HHHHHHH-CCCCc-CHHhHHHHHHHHHc---------CCChHHHHHHHHHH
Q 009556 180 RNQETYEILLDYH-VNAGRLDDTWL----IINEMRS-KGFQL-NSFVYGKVIGLYRD---------NGMWKKAVGIVEEI 243 (532)
Q Consensus 180 ~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 243 (532)
|+...|..++... ...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777888887644 45677776665 7776654 35444 45677777766554 68899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHH
Q 009556 244 REMGLSLDRQIYNSIIDTF-------------GKYGELVEALEVFEKMQ------QES---IRPD--------IVTWNSL 293 (532)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~p~--------~~~~~~l 293 (532)
++.........|....... .+.++++.|..++..+. +.. +.|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832111123444332211 13456777877776632 221 2343 2456555
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhc
Q 009556 294 IRWHCKA----GDV----AKALELFTQMQEQGFYPDPKIFITIISCLGE-------LGKWD-------VIKKNFENMKDR 351 (532)
Q Consensus 294 i~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~ 351 (532)
+...... ++. +++..+|++..... +-+...|......+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433332 232 47788999988752 3467777777777765 78887 899999999874
Q ss_pred CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHH
Q 009556 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS--GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM 429 (532)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 429 (532)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 34567889999999999999999999999999985 343 3578889999999999999999999998753 223333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC-CCCC--HHHHHHHHH
Q 009556 430 LNVLINA-FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPD--RKARQILQS 505 (532)
Q Consensus 430 ~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~l~~ 505 (532)
|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3333222 346899999999999998753 3367889999999999999999999999999863 3343 335555555
Q ss_pred HHHHHhh
Q 009556 506 ALVVLEQ 512 (532)
Q Consensus 506 a~~~~~~ 512 (532)
.....|+
T Consensus 472 ~e~~~G~ 478 (530)
T 2ooe_A 472 FESNIGD 478 (530)
T ss_dssp HHHHSSC
T ss_pred HHHHcCC
Confidence 5554444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=157.71 Aligned_cols=267 Identities=11% Similarity=0.009 Sum_probs=188.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998875 5678899999999999999999999999998865 45688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCH----------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHhHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQ----------ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKV 223 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 223 (532)
..|...|++++|.+.|+++.+... .+. ..+..+...+...|++++|.+.|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999887432 111 12233466777777888888888877765332 146677777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009556 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (532)
...+...|++++|.+.++++.+.. +.+..+|+.+...|.+.|++++|...|++..+... .+..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 777777777777777777777654 33566777777777777777777777777766422 2466677777777777777
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 304 AKALELFTQMQEQGFY-----------PDPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
++|...|+++.+.... .+...+..+..++...|+.+.+..+..
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777776643100 023445555556666666655555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-17 Score=154.32 Aligned_cols=266 Identities=14% Similarity=0.030 Sum_probs=220.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678889999999999999999999999875 5678899999999999999999999999999876 567889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHh
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEI---------------LLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFV 219 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~ 219 (532)
.+...|++++|.+.|+++...... +...+.. .+..+...|++++|...|+++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999999999986532 2222221 2444448999999999999998864332 5788
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+...|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 44688999999999999999999999999887532 367889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 300 AGDVAKALELFTQMQEQGFYP----------DPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
.|++++|...++++.+..... ...++..+..++...|+.++|..++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 999999999999987542111 15667777777777777777776655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=158.88 Aligned_cols=352 Identities=13% Similarity=0.127 Sum_probs=148.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5577888888888873 234788888888888888888888854 2566788888888888888888888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77666653 3556778888888888888888887774 356678888888888888888888888866
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009556 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328 (532)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (532)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 257888888888888888888888872 778888888888888888888554443 22344445567
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC--CcccHHHHHHHHHHcCCCC------CHHHHHHHHH
Q 009556 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG--RFRDPEECIAALKLEGLQP------SGSMFCILAN 400 (532)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~------~~~~~~~li~ 400 (532)
+..|.+.|+++++..+++...... +-....|+.+.-+|++-. +..+.++.|.. +.+++| +...|.-+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887665 556777777777777642 23333333321 111111 2356778888
Q ss_pred HHHhcCCHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 401 AYAQQGLCEQTVKVLQLMEPEG-----------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
.|.+.++++.|....-+-.... -..|...|-..+.-|... .+..--.++.-+.. ..| .+..+
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l~~---~ld---~~r~v 363 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSP---RLD---HTRAV 363 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGG---GCC---HHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHh---ccC---cHHHH
Confidence 8888888887776443322110 023445555555555411 11111111111111 112 23444
Q ss_pred HHHHhcCCcChHHHHHHHHHhC
Q 009556 470 KAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
..+.+.|...-+...++.....
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTT
T ss_pred HHHHHcCCcHHHHHHHHHHHHh
Confidence 5556666666666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=178.58 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQA---LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
-..+||++|++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC------HHhHHHHHH
Q 009556 153 LLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN------SFVYGKVIG 225 (532)
Q Consensus 153 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~ 225 (532)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766553 444444444 3345544 455556666
Q ss_pred HHHcCC
Q 009556 226 LYRDNG 231 (532)
Q Consensus 226 ~~~~~~ 231 (532)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 776655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-17 Score=150.69 Aligned_cols=265 Identities=9% Similarity=0.010 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567788889999999999999999998875 5577889999999999999999999999998875 557788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCcCHHhH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL--------------LD-YHVNAGRLDDTWLIINEMRSKGFQLNSFVY 220 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 220 (532)
.+...|++++|.+.++++.+... .+...+..+ .. .+...|++++|.+.++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999987543 222233332 11 244555666666666666554322 45555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (532)
..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 555566666666666666666655543 22455555555556666666666666655554321 2345555555555556
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYP-----------DPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
|++++|.+.++++.+..... +...+..+..++.+.|+.++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666665555554332110 23444445555555555555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=152.61 Aligned_cols=267 Identities=11% Similarity=-0.012 Sum_probs=157.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34558888888888999999999999888765 45778888888888888999999988888887643 45778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHH----------hHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSF----------VYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSII 259 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 259 (532)
.|...|++++|.+.|+++.+.... +.. .+..+...+...|++++|.+.++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888888764211 111 1122344455555555555555555544211 1344455555
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..|.+.|++++|.+.|++..+... .+..+|..+...|...|++++|++.|+++.
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------------- 274 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRAL------------------------- 274 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------
Confidence 555555555555555555444321 134444455555555555555555555444
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCH
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-----------PSGSMFCILANAYAQQGLC 408 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~ 408 (532)
+.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.
T Consensus 275 ----------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 275 ----------EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp ----------HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred ----------hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 432 223444445555555555555555555544332110 1245677777777777777
Q ss_pred HHHHHHHHH
Q 009556 409 EQTVKVLQL 417 (532)
Q Consensus 409 ~~A~~~~~~ 417 (532)
+.+.+....
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=174.43 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=104.9
Q ss_pred CCCHhHHHHHHHHHHhcCCcccHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH
Q 009556 354 GKIGAIYAILVDIYGQYGRFRDPEECIAALK---LEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML 430 (532)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 430 (532)
.....+|+++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3346678888888888888888888887765 3467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 431 NVLINAFGVAGKY-KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 431 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
|++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 8888888888874 67788888888888888888888887665554 344444444 3455554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-16 Score=145.56 Aligned_cols=280 Identities=10% Similarity=-0.034 Sum_probs=169.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 3456677888888999999999999988765 45777888888889999999999999998887643 467788888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID--TFGKYGELV 269 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~ 269 (532)
+...|++++|.+.++++.+.... +...+..+...+ ++......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 88889999999988888776322 222222220000 00000111111 244455555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
+|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544322 144555555555555555666655555555432 2234555555555566666666666666555
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 350 DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-----------SGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 350 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
+.. +.+...+..+...|...|++++|.+.++++.+..... +...|..+...+...|++++|..++++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 543 3345555666666666666666666666655443221 3556667777777777777777776644
Q ss_pred c
Q 009556 419 E 419 (532)
Q Consensus 419 ~ 419 (532)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-15 Score=149.02 Aligned_cols=391 Identities=10% Similarity=-0.032 Sum_probs=240.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL--------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-----G 142 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g 142 (532)
....||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999887542 12334568899999999999999999999887642 1
Q ss_pred -C-CCChHhHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCc
Q 009556 143 -F-NPKLRFYNILLRGFLKK--GLLGLGSRLLMVMEDMGICRNQETYEILLDY---HVNAGRLDDTWLIINEMRSKGFQL 215 (532)
Q Consensus 143 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~ 215 (532)
. .....++..+..++.+. +++++|.+.|++..+..+ -+...+..+... +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 1 12345666665566554 468899999999887543 344455554444 34567778888888887765322
Q ss_pred CHHhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009556 216 NSFVYGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN 291 (532)
Q Consensus 216 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (532)
+..++..+...+.. .+++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.... +...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555544443 467788888888887764 446778888888899999999999999888765322 455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 009556 292 SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (532)
.+...|...+.... ... ... ........+..+.|...++...+.. +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555532211110 000 000 0000111223567778888877665 445667788888899999
Q ss_pred CcccHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009556 372 RFRDPEECIAALKLEGLQPSGS--MFCILAN-AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (532)
++++|+..|++..+....+... .+..+.. .....|+.++|+..+++..+. .|+...... ....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHH
Confidence 9999999999888765433221 2222222 234678899999999888764 454433222 2234455
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC-CCCCHHH
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPDRKA 499 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t 499 (532)
++++..+.. +.+..+|..|..+|...|++++|.+.|++..+.| ..|+..+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 566655542 3467788999999999999999999999998754 3455443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=139.46 Aligned_cols=253 Identities=11% Similarity=0.080 Sum_probs=174.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
|+-....|+++.|+..++..... .|+. .....+.+++...|+++.|+..++.. -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 45556778888888888776543 2332 34456678888888888888766441 3567777888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887765434 455666667788888888888888876 346677777778888888888888888
Q ss_pred HHHHHcCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 241 EEIREMGLSLDRQI---YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 241 ~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
+.+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.+++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887764 33211 122334444557777777777777765 23466777777777777777777777777776653
Q ss_pred CCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhcC
Q 009556 318 FYPDPKIFITIISCLGELGKWDV-IKKNFENMKDRG 352 (532)
Q Consensus 318 ~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 352 (532)
+-+..++..++..+...|+.++ +.++++++.+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3356667777777777777654 456666666554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=139.24 Aligned_cols=252 Identities=13% Similarity=0.155 Sum_probs=165.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 119 IEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 119 i~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|...++.. -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 44555678888888777665432 2332 34455677788888888877655441 2356667777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 197 RLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|+.++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877765444 444555566777777888887777766 346667777777777777777777777
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 276 EKMQQESIRPDIVTW---NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 276 ~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...+..+..++.+.|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7776653 332211 11223333446777777777777765 34466667777777777777777777777777654
Q ss_pred CCCCHhHHHHHHHHHHhcCCccc-HHHHHHHHHHc
Q 009556 353 HGKIGAIYAILVDIYGQYGRFRD-PEECIAALKLE 386 (532)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 386 (532)
+.+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4456666677777777777654 45666666655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-14 Score=146.86 Aligned_cols=349 Identities=10% Similarity=0.104 Sum_probs=241.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
++.--...+++|...|.+.+|+++++++.-.+ +..+...-+.++....+. +.....+...+.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 33444566788888888888888888888432 113345556666666665 445555555554421 1 3346
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...+...|.+++|..+|++... .....+.++ -..+++++|.++.++. -+..+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 6777888888888888888521 222222232 2667788888887755 2567788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
++|.+.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 8888888664 267778888888888888888888888776643 33333445788888888887644442
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 1 334556667888888888888888888875 358888888888888888888888763 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALV 508 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~ 508 (532)
+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... .-....+.-|...+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 888888888888888888776543 23356667788888888888888888887776432 223345555666666
Q ss_pred HHhhhhhcc
Q 009556 509 VLEQRRCKQ 517 (532)
Q Consensus 509 ~~~~~~~~~ 517 (532)
+....+-.+
T Consensus 1326 Ky~peklmE 1334 (1630)
T 1xi4_A 1326 KFKPQKMRE 1334 (1630)
T ss_pred hCCHHHHHH
Confidence 665554444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=146.25 Aligned_cols=267 Identities=13% Similarity=0.090 Sum_probs=134.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .+++.+.+.++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3458999999999999999999999653 57779999999999999999999988777764 466888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|++++
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 9999999999998885 277789999999999999999999999976 479999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|..+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999988 288999999999999999999976655433 2444456799999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 316 QGFYPDPKIFITIISCLGEL--GKWDVIKKNFENMKDRGHGK------IGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
.. +-....|+-+...+++- ++..+..+.|.. +.++++ +...|..++-.|.+.++++.|....
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 54 44566777776666654 334444444331 122222 4567899999999999999887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-14 Score=142.46 Aligned_cols=374 Identities=11% Similarity=-0.045 Sum_probs=244.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCF--------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM----- 176 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 176 (532)
.....||.+...+...|++++|++.|++..+. .-+....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999887642 11234578899999999999999999999887653
Q ss_pred C-CC-cCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCcCHHhHHHHHHH---HHcCCChHHHHHHHHHHHHcCCC
Q 009556 177 G-IC-RNQETYEILLDYHVNA--GRLDDTWLIINEMRSKGFQLNSFVYGKVIGL---YRDNGMWKKAVGIVEEIREMGLS 249 (532)
Q Consensus 177 ~-~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 249 (532)
+ .. ....++..+..++... +++++|.+.|++..+.... +...+..+..+ +...++.++|++.+++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 01 2345666665555554 5689999999998876422 44455444444 445678888999999888765 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009556 250 LDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF 325 (532)
Q Consensus 250 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (532)
.+..++..+...+.. .++.++|.+.+++...... .+...+..+...|...|++++|.+.+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 356666666555544 4577889999988776533 367788889999999999999999999988753 2345556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009556 326 ITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ 405 (532)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (532)
..+...|...+.... ... ...........+..+.|...++...+.+ +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 555554432111100 000 0000111111233567888888887764 33456688899999999
Q ss_pred CCHHHHHHHHHHhccCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHH
Q 009556 406 GLCEQTVKVLQLMEPEGIEPNLV--MLNVLIN-AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVP 482 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (532)
|++++|.+.|++..+....+... .+..+.. .....|++++|+..|++..+. .|+.......+ +.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHH
Confidence 99999999999988764333221 2233332 345789999999999999874 45543333222 2344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhc
Q 009556 483 EIYKQMESSGCTPDRKARQILQSALVVLEQRRCK 516 (532)
Q Consensus 483 ~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~ 516 (532)
+++++..+.. +.+..++..+...+...|+.+.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555555432 33567888888888877765443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-13 Score=143.46 Aligned_cols=338 Identities=12% Similarity=0.117 Sum_probs=237.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
--...+++|...|++.+|++++++..-.+ +.-+....+.++....+. +..+..+....... .+ ..-+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHHHHH
Confidence 33568899999999999999999998442 113445666677666666 55666666555442 11 3346777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 888899999999888853 12222333332 667888888888755 2577888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 8888553 367778888888888888888888888766653 23223335888888888877544332 2
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFC 396 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (532)
.++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 345566677888888888888888888874 36888888888888888888888875 3447788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
.+..+|...|++..|....... ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...+.+
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 8888888888888777765532 3355667788888888888888888887766443 2233455555555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=127.24 Aligned_cols=225 Identities=13% Similarity=0.024 Sum_probs=161.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHhH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFY 150 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~----~~~~ 150 (532)
...|..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|.+.+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567778888888899999999999888876 6778888888888899999999998888876431 111 4677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..+...+.+.|++++|.+.|++..+.. |+. ..+.+.|++++|...++++..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 788888888888888888888887743 332 345556777788888877776521 2455666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
|++++|...++++.+.. +.+..++..+...+.+.|++++|...|++..+... .+...|..+...+...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777777654 33566677777777777777777777777665432 24566667777777777777777777
Q ss_pred HHHHH
Q 009556 311 TQMQE 315 (532)
Q Consensus 311 ~~m~~ 315 (532)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=125.32 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=128.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45567777778888888888888888887764 5567778888888888888888888888887765 446677777777
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 009556 156 GFLKK-----------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (532)
Q Consensus 156 ~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 224 (532)
.+.+. |++++|...|++..+..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 777777777777666433 345566666667777777777777777766655 4566666666
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
.++...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666677777776666666653 235556666666666666666666666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-14 Score=126.81 Aligned_cols=221 Identities=12% Similarity=0.034 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI--RPD----IVTWNSL 293 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 293 (532)
+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.+++..+... .++ ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3333444444444444444444444433 3344444444444444444444444444433210 011 3445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCc
Q 009556 294 IRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRF 373 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 373 (532)
...+...|++++|.+.+++..+. .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 55555555555555555555543 2221 12333444555555555544432 22333444444455555555
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 374 RDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
++|...+++..+.. +.+...|..+...|...|++++|.+.+++..+.. +.+...|..+..++...|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555544432 2234444445555555555555555555444432 223444445555555555555555555544
Q ss_pred H
Q 009556 454 K 454 (532)
Q Consensus 454 ~ 454 (532)
.
T Consensus 234 ~ 234 (258)
T 3uq3_A 234 R 234 (258)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=139.58 Aligned_cols=348 Identities=17% Similarity=0.113 Sum_probs=217.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT---LEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.+...+.+.|++++|+++|++..+.| ++..+..+...+...|+. ++|.++|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677788999999999999998876 344555666667777887 8999999988853 5566677777555
Q ss_pred hcC-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 159 KKG-----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD---DTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 159 ~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..| +.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 77899999999988654 226667777777665543 3444455444443 345666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG---ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA----GDV 303 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~ 303 (532)
+.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 755544444333322211223337777888888888 888899988888887643 555445666666544 688
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-----Cccc
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISC-L--GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG-----RFRD 375 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 375 (532)
++|+++|++.. .| +...+..+... + ...++.++|...|++..+.+ +...+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88998888877 33 33444455554 3 45788888888888888776 5666777777776 44 7888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 009556 376 PEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEAL 447 (532)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 447 (532)
|...|++.. ..+...+..|...|.. ..++++|.+.|+...+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888888766 3355666667666665 338888888888888766 23344555666653 45788888
Q ss_pred HHHHHHHHCCC
Q 009556 448 SVYHLMKDIGI 458 (532)
Q Consensus 448 ~~~~~m~~~~~ 458 (532)
.+|+...+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 88888877663
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-14 Score=123.91 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=115.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+++...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..+ .+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4566677777788888888888888888877665 45667777788888888888888888887777543 455677777
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009556 189 LDYHVNA-----------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (532)
Q Consensus 189 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (532)
...+.+. |++++|...|++..+.... +...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777766 6666666666665554221 34455555555555555555555555555554 35555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+...|...|++++|...|++..+... .+...+..+...+...|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555554321 13444555555555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-12 Score=118.27 Aligned_cols=224 Identities=11% Similarity=-0.006 Sum_probs=151.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
++..+..+...|.+.|++++|++.|++..+. .+..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3455666777777788888888888887763 355667777777777 788888888888877754 566777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHhHHHH
Q 009556 152 ILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (532)
Q Consensus 152 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 223 (532)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777653 56667777777777 777777777777776654 44555566
Q ss_pred HHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 224 IGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 224 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777666653 44556666666666 666666666666666542 2445555666
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCC
Q 009556 296 WHCK----AGDVAKALELFTQMQEQG 317 (532)
Q Consensus 296 ~~~~----~g~~~~A~~~~~~m~~~~ 317 (532)
.|.. .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-14 Score=137.32 Aligned_cols=345 Identities=10% Similarity=0.020 Sum_probs=235.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998876 334445566667778888 8999999998863 5566677777555
Q ss_pred hcC-----ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 194 NAG-----RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW---KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 194 ~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
..+ ++++|...|++..+.|.. ..+..+...|...+.. .++.+.+....+.| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 788999999999987643 3666777777765543 34555566655555 344566777777777
Q ss_pred CC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---
Q 009556 266 GE----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG---DVAKALELFTQMQEQGFYPDPKIFITIISCLGEL--- 335 (532)
Q Consensus 266 g~----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 335 (532)
+. .+.+..+++..... +...+..+...|...| +.++|+++|++..+.| .++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 74 44455555544432 3337888889999999 9999999999999887 44565556666666554
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHH-H--HhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 009556 336 -GKWDVIKKNFENMKDRGHGKIGAIYAILVDI-Y--GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG----- 406 (532)
Q Consensus 336 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 406 (532)
++.++|...|+... . -++..+..+... | ...++.++|.+.|++..+.| +...+..|...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 78999999999987 3 356667777776 4 56899999999999998876 5667777887777 55
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCc
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----AKKF 478 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~ 478 (532)
++++|.+.|++.. .| +...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999988 44 66777788877776 4499999999999988764 3445566666654 4578
Q ss_pred ChHHHHHHHHHhCCCC
Q 009556 479 HKVPEIYKQMESSGCT 494 (532)
Q Consensus 479 ~~a~~~~~~m~~~g~~ 494 (532)
++|..+|+...+.|..
T Consensus 375 ~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHCCCH
Confidence 8899999998887743
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-13 Score=125.98 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=193.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
...|+.+...+.+.|++++|++.|+++.+.. +.+...|+.+..++...|+ +++|++.|+++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4568888889999999999999999999875 5568899999999999997 999999999999876 557889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc-CCChH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD-NGMWK 234 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~ 234 (532)
++.+.|++++|+..|+++.+... .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998754 57889999999999999999999999999987543 77888888888888 66657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------
Q 009556 235 KA-----VGIVEEIREMGLSLDRQIYNSIIDTFGKYG--ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG------ 301 (532)
Q Consensus 235 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 301 (532)
+| +..+++.++.. +-+...|+.+...+.+.| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788887765 346778888888888877 588888888887 33 3346677788888888764
Q ss_pred ---CHHHHHHHHHHH-HH
Q 009556 302 ---DVAKALELFTQM-QE 315 (532)
Q Consensus 302 ---~~~~A~~~~~~m-~~ 315 (532)
..++|+++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 257888888887 54
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-12 Score=115.27 Aligned_cols=223 Identities=13% Similarity=0.011 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
...+..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444555555555555555555555542 233445555555555 555555555555555543 4445555
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 328 IISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFCILA 399 (532)
Q Consensus 328 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (532)
+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 556666666666555543 45555556666666 666666666666666544 345556666
Q ss_pred HHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 400 NAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (532)
Q Consensus 400 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (532)
..|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66666 677777777777776653 45666777777777 788888888888877754 25566777777
Q ss_pred HHh----cCCcChHHHHHHHHHhCC
Q 009556 472 FIR----AKKFHKVPEIYKQMESSG 492 (532)
Q Consensus 472 ~~~----~g~~~~a~~~~~~m~~~g 492 (532)
|.. .+++++|.+.+++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 788888888888887754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-13 Score=119.28 Aligned_cols=200 Identities=10% Similarity=-0.013 Sum_probs=133.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667788888888899999999998888764 4567778888888888888888888888887664 3456677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777788888877777776622223 345666666667777777777777766665431 134555555556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
|...++.+.+.. +.+...+..+...+.+.|+.++|.+.++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666555442 23444555555555555555555555555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-13 Score=116.35 Aligned_cols=200 Identities=8% Similarity=-0.108 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456666667777777777777777766653 3445666666777777777777777777766543 3345566666666
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 157 FLKK-GLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 157 ~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666665521112 234555555555666666666666655554321 13444444445555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555554443211234444444444444444544444444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-11 Score=122.52 Aligned_cols=427 Identities=9% Similarity=0.053 Sum_probs=296.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCChHhH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---TLEADAIFQEMVCFG-FNPKLRFY 150 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g-~~~~~~~~ 150 (532)
-|...|..++..+.+.++++.|..+|+++... .+.+...|...+..-.+.++ ++.+.++|++..... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999999999999999999999987 46778889999999888888 999999999998754 24888889
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-Cc-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 009556 151 NILLRGFLKKGLL--------GLGSRLLMVMED-MGI-CR-NQETYEILLDYHVN---------AGRLDDTWLIINEMRS 210 (532)
Q Consensus 151 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 210 (532)
...+....+.++. +...++|+.... .|. .+ +...|...+..... .++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888777666654 334577877654 355 44 35688888876543 3457788899999885
Q ss_pred CCCCcCHHhHHHHHHHHHc-------------CCChHHHHHHHHHHHHc--CCC---------------C-----C---H
Q 009556 211 KGFQLNSFVYGKVIGLYRD-------------NGMWKKAVGIVEEIREM--GLS---------------L-----D---R 252 (532)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~--~~~---------------~-----~---~ 252 (532)
.....-..+|......-.. ..+++.|...+.++... ++. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222122333222211111 11233444455443221 111 1 0 2
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 009556 253 QIYNSIIDTFGKYG-------ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL-ELFTQMQEQGFYPDPKI 324 (532)
Q Consensus 253 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~ 324 (532)
..|...+..--..+ ..+.+..+|++.... .+-+...|-..+.-+...|+.++|. ++|++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555555433322 123456678777664 3336778888888888899999997 999998864 3446666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC----------CCC-----------CHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 325 FITIISCLGELGKWDVIKKNFENMKDRG----------HGK-----------IGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
+...+....+.|+++.|..+|+.+.... .+. ...+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888889999999999999987641 121 2346888888888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 009556 384 KLEGLQPSGSMFCILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-- 460 (532)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-- 460 (532)
.+.........|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8761112233444333333344 4589999999998876 34466777888888888999999999999998764322
Q ss_pred CHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
....|..++..-.+.|+.+.+.++.+++.+ ..|+......+.+-+
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHh
Confidence 345788888888899999999999999998 456655666665444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=123.11 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=133.6
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
........|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ------------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 345566778888888999999999999999998764 5567888889999999999999999999988765 45677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+... .+...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcC
Confidence 888888888999999888888877643 4566777777888888888888888887766532 24556666666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777776666553 234555666666666666666666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-12 Score=117.03 Aligned_cols=201 Identities=13% Similarity=0.008 Sum_probs=162.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567788888899999999999999998765 45778888999999999999999999999887643 467788888889
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887733344 45667777888888888888888888888764 3357778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888776533 36667777788888888888888888888765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-12 Score=113.99 Aligned_cols=204 Identities=10% Similarity=-0.077 Sum_probs=141.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 345667777888888888888888888887654 44567777788888888888888888888776543 4566777777
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 190 DYHVNA-GRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 190 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
..+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 777888 88888888888777632223 24566667777777777777777777776653 2346666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
+++|...+++..+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777665432135555666666666777777777777766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-13 Score=121.73 Aligned_cols=234 Identities=13% Similarity=0.029 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~ 156 (532)
.+......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556677888899999999999888764 44566788888888889999999999988887431122 2337788888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+...|++++|.+.|++..+... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877543 455678888888888888888888888877652 22455666666344444578888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGE---LVEALEVFEKMQQES-IRPD------IVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A 306 (532)
.+.++++.+.. +.+...+..+...+...|+ .++|...+++..+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888777764 2345666666666666666 666666666655421 0112 24556666677777777777
Q ss_pred HHHHHHHHHC
Q 009556 307 LELFTQMQEQ 316 (532)
Q Consensus 307 ~~~~~~m~~~ 316 (532)
.+.+++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=126.37 Aligned_cols=247 Identities=13% Similarity=-0.027 Sum_probs=183.4
Q ss_pred HcCChHHHHHHHHHHHHcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhH
Q 009556 89 KLGDIDEAMALLAQMQALGF---HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (532)
..|++++|++.|+++.+... +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34889999999999987632 1246678889999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
|.+.|++..+... .+...|..+...+.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988643 467789999999999999999999999998763 4444444455555677899999999987776
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP---DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
.. +++...+. ++..+...++.++|.+.+++..+..... +...|..+...|...|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 23333343 6667778888888888888876542110 14667778888888888888888888887653 322
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122244555666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=124.19 Aligned_cols=249 Identities=9% Similarity=0.066 Sum_probs=190.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL-LGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
...|..+...+...|++++|++.++++++.. +.+...|+.+..++.+.|+ +++|+..|+++.+... .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4567788888889999999999999999876 5577889999999999996 9999999999988654 56788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELV 269 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 269 (532)
++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +.+...|+.+...+.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999887433 77888888889999999999999999998875 3477888888888888 55546
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------
Q 009556 270 EA-----LEVFEKMQQESIRPDIVTWNSLIRWHCKAG--DVAKALELFTQMQEQGFYPDPKIFITIISCLGELG------ 336 (532)
Q Consensus 270 ~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------ 336 (532)
+| ++.|++....... +...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777664322 5667777777777777 578888888777 32 3445667777777777653
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCCHhHHHHHHHHHH
Q 009556 337 ---KWDVIKKNFENM-KDRGHGKIGAIYAILVDIYG 368 (532)
Q Consensus 337 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~ 368 (532)
..++|.++++++ .+.+ +.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 247788888777 4443 334455555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=118.70 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC--HHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--QETYEILLDY 191 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~ 191 (532)
.+......+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566666777777777777766653 33444666666666666777777766666665321111 2235666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (532)
+...|++++|.+.|++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554221 34455555555666666666666665555442 22344444444122223355555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHHH
Q 009556 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGD---VAKALELFTQMQEQG-FYPD------PKIFITIISCLGELGKWDVI 341 (532)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a 341 (532)
.+.|++..+... .+...+..+...+...|+ +++|...+++..+.. -.|+ ...+..+...+...|++++|
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 555555554321 124444445555555554 445555555544321 0111 12333344444444444444
Q ss_pred HHHHHHHHhc
Q 009556 342 KKNFENMKDR 351 (532)
Q Consensus 342 ~~~~~~~~~~ 351 (532)
...++++.+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=117.22 Aligned_cols=201 Identities=12% Similarity=0.009 Sum_probs=124.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 44566677777778888888888888887654 44677777788888888888888888888776543 45667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777888888887777766532 255666667777777777777777777776653 2355666666667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
|...|++..+... .+..++..+...+...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777766655422 24556666666666777777777777666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-13 Score=129.00 Aligned_cols=299 Identities=17% Similarity=0.065 Sum_probs=195.1
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFNP 145 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~~ 145 (532)
+.....+......+.+.|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455667777888899999999999999998874 333 357888889999999999999999887542 2122
Q ss_pred -ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCC--------------------hH
Q 009556 146 -KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGR--------------------LD 199 (532)
Q Consensus 146 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~~~--------------------~~ 199 (532)
...++..+...|...|++++|...+++..+.... + ...++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457788888999999999999998887653110 1 13477888888888888 88
Q ss_pred HHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHH
Q 009556 200 DTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLD----RQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 200 ~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 269 (532)
+|.+.+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776432 1111 234566677777788888888888777654311 011 235666777777777877
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHH
Q 009556 270 EALEVFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWD 339 (532)
Q Consensus 270 ~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~ 339 (532)
+|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+... ..+ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 777777766532 1000 134566667777777777777777776653210 111 345555666666777777
Q ss_pred HHHHHHHHHHhc----CC-CCCHhHHHHHHHHHHhcCCc
Q 009556 340 VIKKNFENMKDR----GH-GKIGAIYAILVDIYGQYGRF 373 (532)
Q Consensus 340 ~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~ 373 (532)
+|...+++..+. +. +....++..+...+...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777766665432 10 11133444455555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-13 Score=120.89 Aligned_cols=225 Identities=10% Similarity=-0.044 Sum_probs=178.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 46788899999999999999999999999875 5578899999999999999999999999999875 457889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHH
Confidence 9999999999999999998854 444445555566677899999999998887653 2333333 46777788888999
Q ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 236 AVGIVEEIREMGLS---LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 236 a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
|.+.++...+.... .+...+..+...|.+.|++++|...|++..+.. |+. +.....++...|++++|++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999888654321 125788889999999999999999999998763 322 333455677788888887766
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=126.36 Aligned_cols=238 Identities=13% Similarity=0.048 Sum_probs=154.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF----GF-NPK 146 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~-~~~ 146 (532)
....+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|.+.+++..+. +. +..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667778899999999999999998874 3333 47888889999999999999999988753 11 224
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCC-----------------hHHHHHH
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQETYEILLDYHVNAGR-----------------LDDTWLI 204 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~ 204 (532)
..++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567788888999999999999998887653 1 11234467778888888888 7777777
Q ss_pred HHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHH
Q 009556 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 205 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
+++..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7765432 1111 2235556666677777777777777666543100 01 12455556666666666666666
Q ss_pred HHHHHhCCC--C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 275 FEKMQQESI--R---PDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 275 ~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+++..+... . ....++..+...+...|++++|.+.+++..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 655543200 0 012344555555556666666666555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-11 Score=110.32 Aligned_cols=235 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-------cCCH-------HHHHHHH
Q 009556 78 NSYNKSIQYCCKL----GDI----DEAMALLAQMQALGFHPSSISYASLIEALAS-------VGRT-------LEADAIF 135 (532)
Q Consensus 78 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~ 135 (532)
..|...+..-.+. ++. ++|+.+|+++.... +.++..|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666654443 233 68888999988764 5677888888877763 4775 8899999
Q ss_pred HHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 136 QEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 136 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
++..+.-.+.+...|..++..+.+.|++++|.++|++..+... .+.. .|..++..+.+.|++++|..+|++..+...
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 9988731144566888888888889999999999998887432 1233 788888888888889999999888887643
Q ss_pred cCHHhHHHHHHHH-HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCC--CHHHH
Q 009556 215 LNSFVYGKVIGLY-RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRP--DIVTW 290 (532)
Q Consensus 215 ~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~ 290 (532)
.+...|....... ...|++++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++..... ..| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2344443333322 23688888888888877653 3367777888888888888888888888887752 333 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 291 NSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..++....+.|+.+.|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777788888888888877764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=126.64 Aligned_cols=303 Identities=14% Similarity=0.053 Sum_probs=170.6
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH
Q 009556 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN----QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG 221 (532)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 221 (532)
....+......+...|++++|...|++..+... .+ ...|..+...+...|++++|...+++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 334445555556666666666666666655422 11 2345555555555666666665555543210
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIR 295 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~ 295 (532)
...+.. ....++..+...|...|++++|...+++..+... .++ ..++..+..
T Consensus 78 ----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 000000 0122344444455555555555555544432100 001 234555566
Q ss_pred HHHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 296 WHCKAGD--------------------VAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 296 ~~~~~g~--------------------~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.|...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666654321 1111 123455566666777777777777766653
Q ss_pred cCC-----CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 351 RGH-----GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 351 ~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
... .....++..+...|...|++++|...+++....... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011236667777778888888888887776542110 11 45677788888899999999988887754
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCh
Q 009556 421 EGI-EPN----LVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISP-DLVTYSTLMKAFIRAKKFHK 480 (532)
Q Consensus 421 ~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 480 (532)
... .++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 310 111 457778888999999999999999887642 2222 23466777788888887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=126.46 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCcCHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQE 183 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 183 (532)
..+..+...+...|++++|.+.|+++.+.+ +.+. ..+..+...|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778889999999999999998864 2333 47888889999999999999999887653 1 112345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CcCHHhHHHHHHHHHcCCC-----------------hHHHHHHHH
Q 009556 184 TYEILLDYHVNAGRLDDTWLIINEMRSK----GF-QLNSFVYGKVIGLYRDNGM-----------------WKKAVGIVE 241 (532)
Q Consensus 184 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 241 (532)
.+..+...|...|++++|...+++..+. +- .....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888888899999999888877543 11 1123456666677777777 666666666
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 242 EIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 242 ~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
+..+. +. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 10 11123455555555666666666666555443200 001 1234445555555555555555555
Q ss_pred HHH
Q 009556 312 QMQ 314 (532)
Q Consensus 312 ~m~ 314 (532)
+..
T Consensus 288 ~al 290 (411)
T 4a1s_A 288 RTL 290 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-12 Score=120.19 Aligned_cols=234 Identities=17% Similarity=0.086 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHh
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFN-PKLRF 149 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~-~~~~~ 149 (532)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556677888999999999999988874 233 356778888999999999999998887642 211 23456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGIC-RN----QETYEILLDYHVNAGR--------------------LDDTWLI 204 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 204 (532)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 778888888889999998888876543110 11 3367777777777787 7777777
Q ss_pred HHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHH
Q 009556 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 205 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
+++.... +..+ ...++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665331 1111 1234455555566666666666666555432100 01 12444444555555555555555
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 275 FEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 275 ~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+++..+... ..+ ..++..+...+...|++++|...+++.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 554432100 001 223344444444555555555544443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-10 Score=112.34 Aligned_cols=414 Identities=10% Similarity=0.082 Sum_probs=280.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC---hhHHH
Q 009556 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL---LGLGS 167 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 167 (532)
....+.+..|++....+ +-|..+|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.|. ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 33455566667766665 6799999999999999999999999999999763 6677889999998889898 99999
Q ss_pred HHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CcC-HHhHHHHHHHHHc------
Q 009556 168 RLLMVMEDMG-ICRNQETYEILLDYHVNAGRL--------DDTWLIINEMRS-KGF-QLN-SFVYGKVIGLYRD------ 229 (532)
Q Consensus 168 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~ll~~~~~------ 229 (532)
++|++..... ..|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999998764 247888999988877665553 334477777553 466 554 4677777765442
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHh----------ccCCHHHHHHHHHHHHh--CCCC-------
Q 009556 230 ---NGMWKKAVGIVEEIREMGLSLDRQIYNSI---IDTFG----------KYGELVEALEVFEKMQQ--ESIR------- 284 (532)
Q Consensus 230 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~----------~~g~~~~A~~~~~~m~~--~~~~------- 284 (532)
.++++.+..+|+.++......-..+|... ...+. ...+++.|...+.++.. .++.
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34567888999998864222122333222 21110 01233445555554332 1111
Q ss_pred --------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009556 285 --------P-----D---IVTWNSLIRWHCKAG-------DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (532)
Q Consensus 285 --------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 341 (532)
| + ...|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|+.+.|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 1 234555554332222 124456778887765 344677888888888888999999
Q ss_pred H-HHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC---------CCCC------------HHHHHHHH
Q 009556 342 K-KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG---------LQPS------------GSMFCILA 399 (532)
Q Consensus 342 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li 399 (532)
. .++++..... |.+...|-..+....+.|++++|.++|+.+.... ..|+ ..+|...+
T Consensus 363 ~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 9999998753 5677778889999999999999999999987631 0132 34688888
Q ss_pred HHHHhcCCHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVA-GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (532)
....+.|+.+.|..+|..+.+. + .+....|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 8888899999999999999865 2 22233443333333344 4599999999999876 44467777888888888999
Q ss_pred cChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 478 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
.+.|..+|++...... +......+...+..++.
T Consensus 520 ~~~AR~lferal~~~~--~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 520 ESQVKSLFESSIDKIS--DSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHHHHHHHTTTSS--STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence 9999999999987543 22233345555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-11 Score=102.58 Aligned_cols=167 Identities=14% Similarity=0.047 Sum_probs=108.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
++..|..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44567777777777777777777777777664 4456677777777777777777777777776554 345556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+...++++.|...+.+...... .+...+..+...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 66777777777777776665432 34556666666666666666666666666554321 45555666666666666666
Q ss_pred HHHHHHHHHHc
Q 009556 236 AVGIVEEIREM 246 (532)
Q Consensus 236 a~~~~~~~~~~ 246 (532)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666665553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-12 Score=117.29 Aligned_cols=275 Identities=14% Similarity=0.068 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-cCHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQET 184 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~ 184 (532)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44555677788899999999999888764 223 356778888888889999988888876542 111 12446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cC----HHhHHHHHHHHHcCCC--------------------hHHHHHH
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LN----SFVYGKVIGLYRDNGM--------------------WKKAVGI 239 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~ 239 (532)
+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777777888888888888887776542100 11 2355566666666666 6666666
Q ss_pred HHHHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 009556 240 VEEIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALEL 309 (532)
Q Consensus 240 ~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 309 (532)
+++..+. +. .....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5554321 10 01122344444555555555555555554432100 001 11344444444445555555544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC
Q 009556 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (532)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 388 (532)
+++..+... ..+. .....++..+...|...|++++|...+++..+...
T Consensus 246 ~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444332100 0000 00133444555555555666665555555433210
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 389 -----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 389 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
.....++..+...|...|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00123456666777777777777777776654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-11 Score=115.11 Aligned_cols=225 Identities=11% Similarity=-0.037 Sum_probs=121.9
Q ss_pred HHcCChHHHHHHHHHHHHcC--CCCCH--hHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCChHh-
Q 009556 88 CKLGDIDEAMALLAQMQALG--FHPSS--ISYASLIEA--LASVGRTLEAD-----------AIFQEMVCFGFNPKLRF- 149 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~--~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~~g~~~~~~~- 149 (532)
.+.+++++|..+++++.+.- +..|. ..|-.++.. ..-.++++.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 57899999999999986642 22333 333333322 12223344444 5666654321 11111
Q ss_pred -----HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----C
Q 009556 150 -----YNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-----Q 214 (532)
Q Consensus 150 -----~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~ 214 (532)
+......+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+++..+.-. .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 122455566778888888888777653 1111 234667777777777777777777776643210 0
Q ss_pred c-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-
Q 009556 215 L-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEVFEKMQQE----SI- 283 (532)
Q Consensus 215 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~- 283 (532)
+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|.+.|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1 1235555666666666666666666665532100 01 124555555666666666666666555441 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 284 RPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+....++..+...+.+.|++++|.+.+++..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2223445555555666666666666555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-11 Score=116.88 Aligned_cols=227 Identities=7% Similarity=0.009 Sum_probs=107.8
Q ss_pred HHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CC----CCCHHHHHHHH
Q 009556 226 LYRDNGMWKKAVGIVEEIREM----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQE--SI----RPDIVTWNSLI 294 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~p~~~~~~~li 294 (532)
.+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. .. .....+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344455555555555555432 1000 1234555555555555555555555554431 00 00123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CCCHhHHHHHH
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAILV 364 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li 364 (532)
..|...|++++|++.+++..+... .++ ..++..+...+...|++++|...+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 666666666666666665543200 011 124455555566666666666666555541 11 22344455555
Q ss_pred HHHHhcCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 365 DIYGQYGRFRDPEECIAALKLEG----LQPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..|.+.|++++|...+++..+.. .+.....+..+...|...|+ +++|..++++.... +.....+..+...|
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y 349 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHH
Confidence 55556666666655555543321 01111123344445555555 45555555544210 11223444555556
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMK 454 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~ 454 (532)
...|++++|.+.+++..
T Consensus 350 ~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666655554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=119.20 Aligned_cols=170 Identities=12% Similarity=0.029 Sum_probs=131.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------G 142 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------g 142 (532)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677889999999999999999999998873 22344567888999999999999999999988764 2
Q ss_pred C-CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 009556 143 F-NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------GI-CRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--- 211 (532)
Q Consensus 143 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 211 (532)
- +....++..+...|...|++++|.+.|++..+. +. +.....+..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888889999999999999999888764 11 223456778888888889999998888887654
Q ss_pred ---CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 212 ---GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 212 ---~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
+..| ...++..+...+...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 344667777788888888888888887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-10 Score=104.21 Aligned_cols=217 Identities=13% Similarity=0.062 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 129 LEADAIFQEMVCFGFNPKLRFYNILLRGFLK-------KGLL-------GLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 129 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
++|..+|+++.+.. +.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777643 4456666666666543 4664 6666666666652111344566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCcC-HH-hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLN-SF-VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG-KYGELVEA 271 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 271 (532)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666653 232 22 555555555566666666666666655432 22333332222211 24555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-FYP--DPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
.++|++..+... .+...|..++..+.+.|++++|..+|++..... +.| ....+..++....+.|+.+.+..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544311 134445555555555555555555555555431 222 2334444444444455555555555554
Q ss_pred Hh
Q 009556 349 KD 350 (532)
Q Consensus 349 ~~ 350 (532)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=122.02 Aligned_cols=216 Identities=11% Similarity=0.003 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
.++++.+.++...... +.+...+..+...+...|++ ++|.+.|++..+... .+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777666543 34677778888888888888 888888888777543 45677888888888888888888888
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHcC---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCH
Q 009556 206 NEMRSKGFQLNSFVYGKVIGLYRDN---------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY--------GEL 268 (532)
Q Consensus 206 ~~m~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 268 (532)
++..+.. |+...+..+...+... |++++|.+.+++..+.. +.+...|..+...|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8887763 5567777777788887 88888888888887764 34677788888888777 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIR--PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
++|++.|++..+.... .+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887764220 267778888888888888888888888877653 2355667777777888888888877655
Q ss_pred HH
Q 009556 347 NM 348 (532)
Q Consensus 347 ~~ 348 (532)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-11 Score=99.60 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=92.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
++..|..+...+...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45556666666666666666666666666554 34555666666666666666666666666655432 33445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+...++++.|.+.+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555666666666666555543211 34445555555555555555555555555443 2244455555555555555555
Q ss_pred HHHHHHHHHh
Q 009556 271 ALEVFEKMQQ 280 (532)
Q Consensus 271 A~~~~~~m~~ 280 (532)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-11 Score=118.11 Aligned_cols=212 Identities=12% Similarity=0.008 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL-VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
+++.+.+++..... +.+...+..+...|...|++ ++|++.|++..+... .+...|..+...|...|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444332 23555666666666666666 666666666655422 1455666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc--------CCccc
Q 009556 313 MQEQGFYPDPKIFITIISCLGEL---------GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY--------GRFRD 375 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 375 (532)
..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 34555566666666666 66666666666666554 33455566666666655 66666
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 376 PEECIAALKLEGLQ--PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 376 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
|...|++..+.... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666554310 355566666666666666666666666665542 3344556666666666666666665443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=114.70 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=54.7
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 009556 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-------GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------G 212 (532)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 212 (532)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677777777777777666552 12223445566666666666666666666665432 1
Q ss_pred C-CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 213 F-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 213 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
- .....++..+...+...|++++|...++++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 11233444445555555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-10 Score=108.50 Aligned_cols=241 Identities=13% Similarity=-0.012 Sum_probs=120.8
Q ss_pred CCChhhHHHHHHHH--HHcCChHHHHHHHHHHHHcC--CCCC--HhHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 009556 74 EFSGNSYNKSIQYC--CKLGDIDEAMALLAQMQALG--FHPS--SISYASLIEA--LASVGRTLEAD---------AIFQ 136 (532)
Q Consensus 74 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~--~~~~--~~~~~~li~~--~~~~~~~~~A~---------~~~~ 136 (532)
.|+...-+.+-..| .+.+++++|.++++++.... +..| ...|-.++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555556666676 78899999999999876532 2223 2333333332 11112222222 4455
Q ss_pred HHHHCCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 137 EMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 137 ~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
.+.....+.+. ..+-.....+...|++++|...|++..+.... + ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54322101010 11222344455667777777777776543110 1 233566666667777777777766666
Q ss_pred HHHC----C-CCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 009556 208 MRSK----G-FQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----GLS-LDRQIYNSIIDTFGKYGELVEALEVFE 276 (532)
Q Consensus 208 m~~~----~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (532)
..+. + ..+ ...++..+...+...|++++|.+.+++..+. +.. ....+++.+...|...|++++|.+.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5432 1 011 1334555556666666666666666655432 100 012344455555555566666555555
Q ss_pred HHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 277 KMQQ-----ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 277 ~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
+..+ .... ...++..+...+.+.|++++|...+++..+
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544 2111 234445555555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-09 Score=103.49 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=166.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hHhHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSI----SYASLIEALASVGRTLEADAIFQEMVCFGF-NPK----LRFYNI 152 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~~~----~~~~~~ 152 (532)
.....+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+++..+..- ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999987764222222 456677788889999999999988764210 111 233566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--c--CHHhHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDM----GIC--R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ--L--NSFVYG 221 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~~~ 221 (532)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888889999998888877653 221 2 2345666777888888888888888887654221 1 234566
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSL-D-RQIYN----SIIDTFGKYGELVEALEVFEKMQQESIRP---DIVTWNS 292 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ 292 (532)
.+...+...|++++|...+++..+....+ . ..... ..+..+...|+.++|...+++.......+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 66777778888888888888776531111 1 11111 22334667788888888877766532211 1224556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 293 LIRWHCKAGDVAKALELFTQMQEQ----GFYPDP-KIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
+...+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666777777777777777765432 111111 234444455556666666666665554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-09 Score=104.87 Aligned_cols=272 Identities=11% Similarity=-0.020 Sum_probs=116.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH----hHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH----HHHHH
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDR----QIYNS 257 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 257 (532)
.....+...|++++|...+++........+.. ++..+...+...|++++|.+.+++..+... ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444555666666666666655543221221 233444455555666666665555543210 0111 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQE----SIR--P-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 330 (532)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+.....
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------- 168 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---------- 168 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS----------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc----------
Confidence 444445555555555555544321 111 1 11223334444445555555555555444321100
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC-CHHHHH-----HHHHHHHh
Q 009556 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-SGSMFC-----ILANAYAQ 404 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~ 404 (532)
+.+.....+..+...+...|++++|...+++.......+ ....+. ..+..+..
T Consensus 169 ---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 169 ---------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp ---------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 000012233444444455555555555555443321111 000111 11222445
Q ss_pred cCCHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcC
Q 009556 405 QGLCEQTVKVLQLMEPEGIEP---NLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPDL-VTYSTLMKAFIRAK 476 (532)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g 476 (532)
.|++++|...+++.......+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 555655555555554332111 1223444555555556666666555554321 111122 13444445555556
Q ss_pred CcChHHHHHHHHH
Q 009556 477 KFHKVPEIYKQME 489 (532)
Q Consensus 477 ~~~~a~~~~~~m~ 489 (532)
+.++|...+++..
T Consensus 308 ~~~~A~~~l~~al 320 (373)
T 1hz4_A 308 RKSDAQRVLLDAL 320 (373)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-10 Score=96.57 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777778888888888888776653 4456677777777888888888888888777654 34566677777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766532 355566666666777777777777776666543 224455555666666666666666
Q ss_pred HHHHHHHH
Q 009556 238 GIVEEIRE 245 (532)
Q Consensus 238 ~~~~~~~~ 245 (532)
..++.+.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-10 Score=106.85 Aligned_cols=227 Identities=9% Similarity=-0.012 Sum_probs=105.5
Q ss_pred HHHcCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-CC-CHHHHHHHH
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGL-SL----DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SI-RP-DIVTWNSLI 294 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p-~~~~~~~li 294 (532)
.+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+++..+. +. .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 33445555555555555543210 01 1234455555555566666655555554321 00 00 123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCCHhHHHHHHH
Q 009556 295 RWHCKAGDVAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVD 365 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 365 (532)
..|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 6666666666666666654431 1000 1233444555555566666666655555441 11222444555555
Q ss_pred HHHhcCCcccHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 009556 366 IYGQYGRFRDPEECIAALKLEGL----QPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (532)
.|.+.|++++|...+++..+... +.....+..+...|...++ +.+|...+++... .+.....+..+...|.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHH
Confidence 55555555555555555544211 1111223333334444444 4555555544211 0111233445555566
Q ss_pred hcCCHHHHHHHHHHHH
Q 009556 439 VAGKYKEALSVYHLMK 454 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~ 454 (532)
..|++++|.+.|++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666555554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-10 Score=117.04 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|+.+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5679999999999999999999999999874 4568899999999999999999999999999875 4568899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
|.+.|++++|++.|++..+... -+...|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999988653 46789999999999999999999999999886432 678899999999999999999
Q ss_pred HHHHHHHHH
Q 009556 237 VGIVEEIRE 245 (532)
Q Consensus 237 ~~~~~~~~~ 245 (532)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-10 Score=93.25 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345555666666677777777666665443 33455666666666666666666666666655422 3445555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (532)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 56666666666665555432 1234444444445555555555555555544432 223344444444444444444444
Q ss_pred HHHHHH
Q 009556 273 EVFEKM 278 (532)
Q Consensus 273 ~~~~~m 278 (532)
+.+++.
T Consensus 165 ~~~~~~ 170 (186)
T 3as5_A 165 PHFKKA 170 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-10 Score=114.51 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=147.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.+..+|+.+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++..+... -+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3456789999999999999999999999999875 45678999999999999999999999999988653 467899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...|.+.|++++|++.|++..+.... +..++..+..++...|++++|++.|++..+.. +-+...+..+...|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999886433 67889999999999999999999999999875 34688899999999999999
Q ss_pred HHHHHHHHHHHh
Q 009556 269 VEALEVFEKMQQ 280 (532)
Q Consensus 269 ~~A~~~~~~m~~ 280 (532)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-09 Score=92.02 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 288 VTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
..+......+...|++++|++.|++..+....++...+..+..++...|++++|...++...+.. +.+...+..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 44444444445555555555555554443322344444444445555555555555555554433 22344455555555
Q ss_pred HhcCCcccHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC---HHHHHHHHHHH
Q 009556 368 GQYGRFRDPEECIAALKLEGLQPSG-------SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN---LVMLNVLINAF 437 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 437 (532)
...|++++|...+++..+... .+. ..|..+...+...|++++|.+.+++..+. .|+ ...|..+..+|
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 555555555555555554421 122 23555666667777777777777777664 343 45556666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
...| ..+++++...+ ..+...|.... ....+.+++|...+++..+ +.|+...
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~ 215 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTE 215 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHH
Confidence 5433 33344444432 12333343332 2334556777777777776 4555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-09 Score=91.71 Aligned_cols=194 Identities=10% Similarity=-0.041 Sum_probs=151.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
|+..|......+.+.|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5577888889999999999999999999988633788888889999999999999999999999875 446788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHhHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQ-------ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIG 225 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~ 225 (532)
.|...|++++|.+.|++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 99999999999999999988643 334 45788888899999999999999999876 444 456666666
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
.+... +..+++++...+ ..+...|.... ....+.+++|...|++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66544 344455555543 22444444443 23456689999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-10 Score=102.54 Aligned_cols=227 Identities=12% Similarity=0.015 Sum_probs=153.9
Q ss_pred HcCChHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCChHhHHHHH
Q 009556 89 KLGDIDEAMALLAQMQA-------LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------GF-NPKLRFYNILL 154 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------g~-~~~~~~~~~li 154 (532)
..|++++|+..|++..+ ...+....++..+...+...|++++|.+.++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555556555555443 222334667888999999999999999999988754 22 23456788899
Q ss_pred HHHHhcCChhHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCc-CHHhH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDM------G-ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQL-NSFVY 220 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~ 220 (532)
..|...|++++|.+.|++..+. . .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 1 1234567888999999999999999999998764 1122 35678
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHhCCCCCC
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREM-------GL-SLDRQIYNSIIDTFGKYGE------LVEALEVFEKMQQESIRPD 286 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~ 286 (532)
..+...+...|++++|...++++.+. .. ......+..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88889999999999999999988763 11 1122233333333332222 33333333322211 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456888999999999999999999987753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-10 Score=100.85 Aligned_cols=228 Identities=9% Similarity=-0.021 Sum_probs=157.5
Q ss_pred hcCCHHHHHHHHHHHHHC-------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CcCHHHHHHHH
Q 009556 124 SVGRTLEADAIFQEMVCF-------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------GI-CRNQETYEILL 189 (532)
Q Consensus 124 ~~~~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 189 (532)
..|++++|.+.|++..+. ..+....++..+...|...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777666542 22334678889999999999999999999998764 21 23456889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CC-CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc------C-CCCCHHHH
Q 009556 190 DYHVNAGRLDDTWLIINEMRSK------GF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM------G-LSLDRQIY 255 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 255 (532)
..|...|++++|.+.+++.... .. +....++..+...+...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 224667888889999999999999999998765 1 12235678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HH-CC--CCCCH
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQE-------SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQM--QE-QG--FYPDP 322 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~-~~--~~~~~ 322 (532)
..+...|...|++++|...+++..+. ...+ ....|..+...+...+....+..+.... .+ .+ .+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999988753 1111 2223333333333333322222211111 11 11 11234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
.++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788889999999999999999988754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.7e-09 Score=82.95 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46777888888888888888888887764 4567777888888888888888888888887765 445667777788888
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888776543 35666777777777778888887777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-08 Score=95.24 Aligned_cols=370 Identities=8% Similarity=-0.010 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHC-CCC-CChHhHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCF-GFN-PKLRFYNILL 154 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~-g~~-~~~~~~~~li 154 (532)
..|...+..+-. |+++.|..+|++.... .|+...|...+....+.+. .+....+|+..... |.. .+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 345566665544 7788888888877764 4677777777776666553 34566677766643 422 3556666666
Q ss_pred HHHH----hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 155 RGFL----KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 155 ~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..+. ..|+++.+.++|++........-...|......- +......+.+++.+..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~--------------------- 150 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL--------------------- 150 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------
Confidence 5543 2355667777777777632111111222222111 1111112222221110
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG--E-----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (532)
+.+..|..+++++...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+.|++
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 122333444443332100013345555544432211 0 344667787777642 33567777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC------------CCCCHhHHHHHHHHHHhcC
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG------------HGKIGAIYAILVDIYGQYG 371 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g 371 (532)
++|..++++.... |....+.. .|....+.++. ++.+.+.- ......+|...+..+.+.+
T Consensus 230 ~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 230 EKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 9998888888876 33322211 12221111111 22222110 0112345666777777778
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 372 RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (532)
..+.|..+|+.. .. ...+...|...+..-... ++.+.|.++|+...+.. +-+...|...++...+.|+.+.|..+|
T Consensus 301 ~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999988 32 223444554333322223 36999999999887652 224556677788788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 378 er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9873 2567788888777788999999998888874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=93.58 Aligned_cols=97 Identities=11% Similarity=-0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCc-C----HHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-----
Q 009556 184 TYEILLDYHVNA-GRLDDTWLIINEMRSKGFQL-N----SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR----- 252 (532)
Q Consensus 184 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 252 (532)
+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 444445555553 55555555555443321000 0 233445555555555555555555555554322111
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 253 -QIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 253 -~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
..+..+..++...|++++|...|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344455555555666666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-07 Score=85.54 Aligned_cols=206 Identities=12% Similarity=0.023 Sum_probs=97.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
-..-.|.+..++.-. .+.....+......+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344467777766622 2222122223334445666666666531 11223333333333322 221
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666555443 33444445666666666777777766666654432 1234555556666666666666666666665
Q ss_pred hcCCCC-----CHhHHHHHHHHH--Hh--cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 350 DRGHGK-----IGAIYAILVDIY--GQ--YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 350 ~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
+.. | +..+...+..++ .. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 2 123333333331 11 22555555555555433 222112222222445555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-07 Score=85.30 Aligned_cols=145 Identities=10% Similarity=-0.019 Sum_probs=69.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
|+-..-.|++..++.-...+.. ......-..+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 5556667888888773332221 11222333445667777766531 11123322333222222 211
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555544433 233444445555566666666666666655444321 1344444555555555555555555555
Q ss_pred HHHc
Q 009556 243 IREM 246 (532)
Q Consensus 243 ~~~~ 246 (532)
|.+.
T Consensus 162 ~~~~ 165 (310)
T 3mv2_B 162 YTNA 165 (310)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-08 Score=86.68 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS----------------LIEALASVGRTLEADAIFQEMVCFGFN 144 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~~~~~~A~~~~~~~~~~g~~ 144 (532)
-.....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|...|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 344556678899999999999988763 223445555 5556666666666666666665543 3
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
.+...+..+...+...|++++|...|++..+..+ .+..+|..+...|...
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666655432 3444555555554433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-08 Score=78.26 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34555666666666666666666665543 33455555566666666666666666666655432 33445555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
..|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554321 1334444444555555555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-06 Score=82.30 Aligned_cols=342 Identities=11% Similarity=-0.017 Sum_probs=200.3
Q ss_pred CCChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHc-CC-CCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCC
Q 009556 74 EFSGNSYNKSIQYCCKLGD-IDEAMALLAQMQAL-GF-HPSSISYASLIEALA----SVGRTLEADAIFQEMVCFGFNPK 146 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~~g~~~~ 146 (532)
.|+...|...++...+.++ .+....+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+......-
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~ 123 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL 123 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence 5799999999998888774 45677888887764 42 346778888887654 34678899999999997321111
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 226 (532)
...|...... .+......+.++..+.. +.+..|..+++.+...-...+...|...+..
T Consensus 124 ~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 124 SELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 1222222111 11111222222222211 1223333333333211000122344443333
Q ss_pred HHcCC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 227 YRDNG--M-----WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 227 ~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
-...+ - .+.+..+|++++... +.+...|-..+..+.+.|+.+.|..++++.... +.+...|. .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 22211 1 234567787777653 445777777777778888888888888888776 22332222 2222
Q ss_pred cCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 300 AGDVAKALELFTQMQEQG---------FYP---DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~---------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
..+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +.. ..+..+|......-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2121221 22222110 011 1244566666666778899999999998 322 23444554333333
Q ss_pred HhcC-CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 368 GQYG-RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (532)
Q Consensus 368 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (532)
...+ +.+.|..+|+...+.. +-+...|...++.....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHH
Confidence 3333 6999999999998764 23455667778878889999999999999842 467788888877888999999
Q ss_pred HHHHHHHHH
Q 009556 447 LSVYHLMKD 455 (532)
Q Consensus 447 ~~~~~~m~~ 455 (532)
..+++++.+
T Consensus 404 r~v~~~~~~ 412 (493)
T 2uy1_A 404 RELVDQKMD 412 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988863
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-08 Score=90.92 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHH
Q 009556 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYPD-PKIFITIISCLGELGKWDVI 341 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 341 (532)
++++|...|++. ...|...|++++|.+.|.+..+. |..++ ..+|..+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888777665 33566788888888888876542 22211 45777888888888999999
Q ss_pred HHHHHHHHhcCCC---C--CHhHHHHHHHHHHhc-CCcccHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 009556 342 KKNFENMKDRGHG---K--IGAIYAILVDIYGQY-GRFRDPEECIAALKLEGLQP-S----GSMFCILANAYAQQGLCEQ 410 (532)
Q Consensus 342 ~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 410 (532)
...+++..+.... + ...+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887653211 1 135678888889886 99999999999876542111 1 3467888899999999999
Q ss_pred HHHHHHHhccCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcC
Q 009556 411 TVKVLQLMEPEGIEPNL------VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV------TYSTLMKAFI--RAK 476 (532)
Q Consensus 411 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~--~~g 476 (532)
|...+++..+....... ..|..+..++...|++++|...|++..+. .|+.. .+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999998775322211 25677888899999999999999998763 33321 2444555554 234
Q ss_pred CcChHHHHHHHH
Q 009556 477 KFHKVPEIYKQM 488 (532)
Q Consensus 477 ~~~~a~~~~~~m 488 (532)
++++|++.|+++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 566666666555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-08 Score=89.09 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=118.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C-CChHhH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGF-N-PKLRFY 150 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~-~~~~~~ 150 (532)
+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677788889999999999999998874 233 66788889999999999999999999987631 1 224567
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHH
Q 009556 151 NILLRGFLK--------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (532)
Q Consensus 151 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 222 (532)
..+..++.+ .|++++|...|+++.+..+ .+...+..+.. +...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 777888888 8999999999999887542 12222211100 0000000 0111334
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhC
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMGLSL--DRQIYNSIIDTFGKY----------GELVEALEVFEKMQQE 281 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 281 (532)
+...+.+.|++++|+..|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4555666666666666666665542211 233455555555544 6666666666666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-07 Score=80.84 Aligned_cols=223 Identities=6% Similarity=-0.005 Sum_probs=160.5
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChHhHHHHHHHH----Hhc
Q 009556 88 CKLGDI-DEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLEADAIFQEMVCFGFNPKLRFYNILLRGF----LKK 160 (532)
Q Consensus 88 ~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~~~ 160 (532)
.+.|.+ ++|+++++.+...+ +-+...|+.--..+...+ ++++++++++.+.... +-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 445554 68999999999875 456677998888888888 9999999999999865 45667777655555 555
Q ss_pred ---CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC---
Q 009556 161 ---GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM--- 232 (532)
Q Consensus 161 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--- 232 (532)
+++++++++++.+.+... .|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 788899999999888654 67788888888888888877 888888888877544 66677666666666665
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 233 ---WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQES--IRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
++++++.++.+.... +-|...|+-+-..+.+.|+..+ +.++.+++.+.+ -..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 777777777777665 3477777777777766666333 444555544322 123566667777777777777777
Q ss_pred HHHHHHHHH
Q 009556 307 LELFTQMQE 315 (532)
Q Consensus 307 ~~~~~~m~~ 315 (532)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-08 Score=87.42 Aligned_cols=212 Identities=9% Similarity=-0.036 Sum_probs=141.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cCHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC--RNQE 183 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~ 183 (532)
+.+...+......+.+.|++++|.+.|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777888888999999999999988764 223 567788888888999999999999988875321 1244
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 009556 184 TYEILLDYHVN--------AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY 255 (532)
Q Consensus 184 ~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 255 (532)
.+..+..++.. .|++++|...|++..+.... +......+. .+..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 66677777777 88888888888888775321 112211111 11111110 11225
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCC--
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQESIRP--DIVTWNSLIRWHCKA----------GDVAKALELFTQMQEQGFYPD-- 321 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 321 (532)
..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 667888999999999999999998753221 245677788888866 899999999999987532211
Q ss_pred HHHHHHHHHHHHccCCHHH
Q 009556 322 PKIFITIISCLGELGKWDV 340 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~ 340 (532)
......+-..+.+.++++.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 2334444445555444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-08 Score=85.14 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
...+......+...|++++|+..|++..+. .|+. ..+.. ..... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHH
Confidence 334444555677888888888888887764 2322 22221 00000 00011222334677
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC--H
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--Y 443 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~ 443 (532)
+|.+.|++++|...|++..+.+ +.+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|. .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 7777888888888888877764 3356677778888888888888888888877653 4456777777777765543 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 444 KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
+.+...++.... ..|....+..+..++...|++++|...|++..+ +.|+......+.
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 334444444432 222222334445556667888888888888876 667765544433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-08 Score=105.29 Aligned_cols=172 Identities=7% Similarity=-0.085 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 123 ASVGRTLEADAIFQEMV--------CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 55666777777776666 322 34455666666677777777777777776665432 345566666667777
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665322 45566666667777777777 77777776654 23566677777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 009556 275 FEKMQQESIRPD-IVTWNSLIRWHCKAG 301 (532)
Q Consensus 275 ~~~m~~~~~~p~-~~~~~~li~~~~~~g 301 (532)
|++..+. .|+ ...|..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7766654 233 445555555554433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=83.90 Aligned_cols=162 Identities=8% Similarity=-0.023 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-HH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-FL 158 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~ 158 (532)
+......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4566778889999999999999877664 4567888899999999999999999999887654 344433332222 22
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
..++...|...+++..+..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22334456777887776533 356778888888888888888888888888765433 3557777778888888888888
Q ss_pred HHHHHHHH
Q 009556 238 GIVEEIRE 245 (532)
Q Consensus 238 ~~~~~~~~ 245 (532)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-08 Score=99.66 Aligned_cols=173 Identities=15% Similarity=0.014 Sum_probs=144.2
Q ss_pred hccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 263 GKYGELVEALEVFEKMQ--------QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.|++..+.. +-+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999988 332 3356788889999999999999999999998753 3367888889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009556 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKV 414 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 414 (532)
.|++++|...|+++.+.. +.+...+..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 4567888999999999999999 99999998875 34677899999999999999999999
Q ss_pred HHHhccCCCCCC-HHHHHHHHHHHHhcCC
Q 009556 415 LQLMEPEGIEPN-LVMLNVLINAFGVAGK 442 (532)
Q Consensus 415 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 442 (532)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999876 454 5677777777766554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-06 Score=77.19 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH----Hhc---CC
Q 009556 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYH----VNA---GR 197 (532)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---~~ 197 (532)
..++|+++++.++..+ +.+...|+.--..+...| +++++++.++.+....+ .+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998875 456677888888888888 89999999999887654 4555676655555 444 67
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------HH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE------LV 269 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 269 (532)
+++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+.+.+. .|-..|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 78888888888776433 6666766666666777776 77777777777653 366677666666655555 66
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK-ALELFTQMQEQG--FYPDPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
++++.++++....+. |...|+.+-..+.+.|+... +.++..++.+.+ -..+...+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 666666666654333 56666666666666555333 333444433221 12244555555555555566666666666
Q ss_pred HHHh
Q 009556 347 NMKD 350 (532)
Q Consensus 347 ~~~~ 350 (532)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-07 Score=80.24 Aligned_cols=175 Identities=14% Similarity=-0.010 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC----ChhHHHHHH
Q 009556 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG----LLGLGSRLL 170 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 170 (532)
+|++.|++..+.| ++..+..+...+...+++++|+++|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666643 56666666777777777777777777776643 44555556666655 4 666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHc----CCChHHHHHHHH
Q 009556 171 MVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQ-LNSFVYGKVIGLYRD----NGMWKKAVGIVE 241 (532)
Q Consensus 171 ~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 241 (532)
++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665542 44455555555554 55666666666665554321 013444555555554 455555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHhC
Q 009556 242 EIREMGLSLDRQIYNSIIDTFGKY-G-----ELVEALEVFEKMQQE 281 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~ 281 (532)
+..+. ..+...+..|..+|... | +.++|...|+...+.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55544 11223344444444322 1 455555555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=82.49 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=91.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhH
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (532)
.+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3445577778887777766442 2234456667777788888888888888877664 4566777777777777788888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI-INEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
|...|++..+..+ -+...|..+...|.+.|+.++|.+. +++..+.... +..+|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 8777777776543 3456677777777777777655544 4555554221 4455555555544444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=96.38 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 009556 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLL 170 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (532)
|++++|++.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66777777777766553 3446667777777777777777777777777654 345666777777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC---CChHHHHHHHHHHHHcC
Q 009556 171 MVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GMWKKAVGIVEEIREMG 247 (532)
Q Consensus 171 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 247 (532)
++..+... .+...|..+...|.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 77766532 3456677777777777777777777777766532 2456666677777777 77777777777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=87.13 Aligned_cols=167 Identities=7% Similarity=-0.032 Sum_probs=121.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHH-H
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYE-I 187 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ 187 (532)
+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4455667777778888888888888888887765 4566778888888888888888888888876643 3433322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYG 266 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 266 (532)
....+.+.++.++|...+++...... .+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23335667777778888888777632 267778888888888888888888888888764321 2567888888888888
Q ss_pred CHHHHHHHHHHHH
Q 009556 267 ELVEALEVFEKMQ 279 (532)
Q Consensus 267 ~~~~A~~~~~~m~ 279 (532)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-07 Score=79.74 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---Hh
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RF 149 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~ 149 (532)
...+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|++.|+++.+.. +.+. ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHH
Confidence 3445567778889999999999999998763 32 3578888899999999999999999998764 1122 23
Q ss_pred HHHHHHHHHh------------------cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 150 YNILLRGFLK------------------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 150 ~~~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+..+..++.+ .|+.++|...|+++.+..+ -+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----------HHHHHH---
Confidence 4444444443 4556666666666665321 1111121111000 000000
Q ss_pred CCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 009556 212 GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 282 (532)
......+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456678889999999999999887642211 2467788889999999999999999888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-07 Score=78.01 Aligned_cols=176 Identities=11% Similarity=0.009 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 009556 130 EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG----RLDDTWLII 205 (532)
Q Consensus 130 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 205 (532)
+|++.|++..+. -+...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 455666666654 345566666666666777777777777766643 44555555555555 4 666666666
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 009556 206 NEMRSKGFQLNSFVYGKVIGLYRD----NGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGK----YGELVEALEVFE 276 (532)
Q Consensus 206 ~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 276 (532)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44555555555554 55666666666666655421 014555555555555 556666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 009556 277 KMQQESIRPDIVTWNSLIRWHCKA-G-----DVAKALELFTQMQEQG 317 (532)
Q Consensus 277 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 317 (532)
+..+.+ .+...+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 655541 1233444454444432 2 5666666666655544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-08 Score=81.84 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 411 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
|.+.+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555555432 2345666666667777777777777777666543322 23456666667777777777777666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=86.77 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=131.0
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH-H
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG-K 222 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ 222 (532)
+.+...+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|...+++.... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 45566777888888899999999999999887644 46678888999999999999999999988665 34443322 2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAG 301 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 301 (532)
....+...++.++|...+++..+.. +.+...+..+...|...|++++|++.|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667778888888898888775 4478888889999999999999999999988753321 2567888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 009556 302 DVAKALELFTQMQE 315 (532)
Q Consensus 302 ~~~~A~~~~~~m~~ 315 (532)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888887553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-08 Score=89.26 Aligned_cols=55 Identities=7% Similarity=0.023 Sum_probs=28.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
..|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..+++..
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455566666666666554432 1000 12345555555555666666666665544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-06 Score=76.78 Aligned_cols=188 Identities=9% Similarity=-0.024 Sum_probs=123.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH--HHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFN-P-KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ--ETYE 186 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 186 (532)
+...+..+...+...|++++|+..|+++.+.... + ....+..+..+|.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778888999999999999999875411 1 1356778889999999999999999999876432211 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 187 ILLDYHVN------------------AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 187 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
.+...+.+ .|++++|...|+++.+.... +.......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 44444443 45666777777766655211 11111111100 00000000
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
.....+...|.+.|++++|...|+++.+...... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456788999999999999999987532211 2467889999999999999999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-08 Score=79.65 Aligned_cols=142 Identities=11% Similarity=-0.069 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHH
Q 009556 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD 200 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 200 (532)
.+...|++++|++.++...... +.+...+-.+...|.+.|++++|.+.|++..+..+ -+..+|..+...|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 3344566666666666655432 12334455566666666777777777666665433 355566666666666666666
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 009556 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI-VEEIREMGLSLDRQIYNSIIDTFGKYG 266 (532)
Q Consensus 201 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (532)
|...|++..+.... +..++..+...+.+.|+++++.+. +++..+.. +-+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666654322 455566666666666666544433 35555543 224455554444444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-07 Score=84.83 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=112.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
.|++++|.+++++..+.. +.. +.. .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467788888888776532 110 011 34455555554443 233444555555555
Q ss_pred HHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHH
Q 009556 169 LLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 169 ~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
.|.+..+. +-.+ -..+|+.+...|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 55544332 1000 1234555555555556665555555554321 1110 12345555555555 66666666
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 009556 239 IVEEIREMGLSL-----DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 239 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~ 308 (532)
.|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666654421100 1345666666677777777777777665542 11111 1245555566666677777777
Q ss_pred HHHHHHHCCCC--CC--HHHHHHHHHHHHccCCHHHHHH
Q 009556 309 LFTQMQEQGFY--PD--PKIFITIISCLGELGKWDVIKK 343 (532)
Q Consensus 309 ~~~~m~~~~~~--~~--~~~~~~ll~~~~~~~~~~~a~~ 343 (532)
.|++.. .... .. ......++.++ ..++.+....
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777765 3211 11 12233444444 4556555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.7e-07 Score=77.07 Aligned_cols=131 Identities=11% Similarity=-0.105 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..+..+...+.+.|++++|++.|++.. .|+...+..+...+...|++++|.+.|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778889999999999998874 5688899999999999999999999999998765 55778899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 009556 158 LKKGLLGLGSRLLMVMEDMGIC--------------R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 213 (532)
...|++++|.+.|++..+.... | ....+..+...+.+.|++++|.+.|++..+...
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999875321 1 226788888899999999999999999887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=92.52 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 009556 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI 204 (532)
Q Consensus 125 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 204 (532)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 45678899999999999999999999999988643 4677899999999999999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHhC
Q 009556 205 INEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY---GELVEALEVFEKMQQE 281 (532)
Q Consensus 205 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 281 (532)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999886432 67888999999999999999999999998875 34678888999999999 9999999999998875
Q ss_pred C
Q 009556 282 S 282 (532)
Q Consensus 282 ~ 282 (532)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-05 Score=73.83 Aligned_cols=183 Identities=10% Similarity=-0.035 Sum_probs=129.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
++.+-....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3443334444556678999999999885 556777888888888888 5999999999999876 567788888777777
Q ss_pred hc-C-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 159 KK-G-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--------DTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 159 ~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
+. + ++++++++++.+.+... .|..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 76 7 88899999999987654 57778877666666655555 777777777776443 6666766666666
Q ss_pred cCCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 229 DNGM-------WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 229 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
+.+. ++++++.++++.... +-|...|+-+-..+.+.|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6654 566666666666654 3366666655555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-07 Score=73.13 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4557778888888999999999999888764 4567788888888888999999999998888765 4567778888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYE--ILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
+...|++++|.+.|++..+... .+...+. .+...+.+.|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888877543 2344443 33334666777788777776653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.6e-07 Score=69.76 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456777778888888888888888887765 5567788888888888888888888888888765 45667788888888
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 009556 158 LKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~ 177 (532)
...|++++|.+.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 88888888888888877753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-06 Score=68.47 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777788888888888888888887764 4466777788888888888888888888877654 4466677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
+...|++++|...|+++.+... .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 8888888888888877766532 3344444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.3e-07 Score=69.76 Aligned_cols=122 Identities=9% Similarity=-0.053 Sum_probs=97.5
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
....+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345567788999999999999999999999998764 4577888899999999999999999999998765 45678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
.+..++.+.|++++|.+.|++..+... .+...+..+...+.+.|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 888899999999999999998877532 33455666666555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.5e-06 Score=74.85 Aligned_cols=160 Identities=10% Similarity=0.002 Sum_probs=68.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-C----HHhHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGI-CRNQ----ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-N----SFVYGKV 223 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~----~~~~~~l 223 (532)
+..+...|++++|.+++++..+... .|+. ..+..+...+...+++++|+..|++........ + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555556666655555554211 1111 112223444444455555555555555422111 1 1134455
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 009556 224 IGLYRDNGMWKKAVGIVEEIREM-----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNS 292 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 292 (532)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555555555555554421 0000 1123444444555555555555554443321 11111 334444
Q ss_pred HHHHHHHcCC-HHHHHHHHHHH
Q 009556 293 LIRWHCKAGD-VAKALELFTQM 313 (532)
Q Consensus 293 li~~~~~~g~-~~~A~~~~~~m 313 (532)
+..++.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 4444444442 34554444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-05 Score=70.71 Aligned_cols=172 Identities=10% Similarity=-0.002 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-C-ChHHHH
Q 009556 126 GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-G-RLDDTW 202 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~ 202 (532)
+..++|+++++.++..+ +.+..+|+.--..+...| ++++++++++.+..... .+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34468999999999876 456677888888888888 59999999999998755 5777888887777776 6 889999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-------
Q 009556 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--------KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE------- 267 (532)
Q Consensus 203 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 267 (532)
++++.+.+...+ |..+|+.-.-.+.+.+.++ ++++.++++.+.. +.|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 999999877543 6667766555555555555 7888888888775 3477788887777777765
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGD 302 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 302 (532)
++++++.+++....... |...|+-+-..+.+.|.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67777777777665332 66667665555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-06 Score=77.78 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=60.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hHhHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGF-HPSS----ISYASLIEALASVGRTLEADAIFQEMVCFGFN-PK----LRFYNI 152 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-~~----~~~~~~ 152 (532)
.+..+...|++++|...+++...... .++. ..+..+...+...+++++|++.|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 34555666666666666666554321 1111 11223444444555666666666666553211 11 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDM-----GICR-NQETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
+...|...|++++|...|+++.+. +..+ ...+|..+...|.+.|++++|...+++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555666666666666655555421 1111 1124444555555555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=67.92 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=88.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45567777888888888888888888887764 4467778888888888888888888888887754 445677777788
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
.+.+.|++++|.+.|++..+... .+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 88888888888888888776543 355566666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-07 Score=75.43 Aligned_cols=135 Identities=9% Similarity=0.092 Sum_probs=98.0
Q ss_pred HhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 009556 368 GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA-FGVAGKY--K 444 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 444 (532)
...|++++|...++...+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 35678888888888877764 3466778888888889999999999998887653 3466777778888 7788888 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+......++..+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence 9999999888753 235677888888899999999999999998873 44433333444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-06 Score=72.44 Aligned_cols=129 Identities=13% Similarity=-0.050 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+..+...+...|++++|.+.|++.. .|+...+..+...|.+.|++++|.+.|++..+... .+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 35566777788899999999888774 56788888899999999999999999998887643 56778888888899
Q ss_pred hcCChHHHHHHHHHHHHCCCC--------------c-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 194 NAGRLDDTWLIINEMRSKGFQ--------------L-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
..|++++|.+.|++..+.... | ....+..+..++...|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999888875322 1 12567777778888888888888888887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-07 Score=81.48 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556677777788888888888888877763 3467777777888888888888888888877654 4456677777777
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~ 175 (532)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777787777777777665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-05 Score=72.78 Aligned_cols=164 Identities=7% Similarity=-0.027 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---CC--Hh
Q 009556 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-----KIFITIISCLGELGKWDVIKKNFENMKDRGHG---KI--GA 358 (532)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 358 (532)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566667777777777777766654221111 11222334445556666666666665532111 11 22
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC----CCC-CH
Q 009556 359 IYAILVDIYGQYGRFRDPEECIAALKL---EGLQ-P--SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG----IEP-NL 427 (532)
Q Consensus 359 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 427 (532)
+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444555555555555555555554431 1100 0 01234444445555555555555544433210 000 13
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEA-LSVYHL 452 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A-~~~~~~ 452 (532)
.+|..+..+|...|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3444444455555555554 333443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=72.82 Aligned_cols=122 Identities=7% Similarity=0.012 Sum_probs=99.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-HHhcCCh--h
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-FLKKGLL--G 164 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 164 (532)
...|++++|+..+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45789999999999988775 5677889999999999999999999999998765 4567788888888 7788998 9
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
+|...|++..+... .+...+..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999887643 456788888899999999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-06 Score=75.54 Aligned_cols=156 Identities=14% Similarity=-0.050 Sum_probs=91.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHhHHHHHHHHHhcCC
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF----GFN-PKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~ 162 (532)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888888855554332 1234567778888888888888888888877651 111 234556677777777888
Q ss_pred hhHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHcCC
Q 009556 163 LGLGSRLLMVMEDM----GICR--NQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNG 231 (532)
Q Consensus 163 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~ 231 (532)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.... +... -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88887777776543 1111 2334666666777777777777777665432 1100 1122344455555556
Q ss_pred ChHHHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIR 244 (532)
Q Consensus 232 ~~~~a~~~~~~~~ 244 (532)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=71.02 Aligned_cols=98 Identities=8% Similarity=-0.055 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|++.|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455666666777777777777777777664 4456677777777777777777777777777654 3456666777777
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 009556 157 FLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~ 176 (532)
|.+.|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-05 Score=73.30 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=56.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC---cC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH---C-CCCc--CHHhHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGIC---RN--QETYEILLDYHVNAGRLDDTWLIINEMRS---K-GFQL--NSFVYG 221 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~ 221 (532)
+...+...|++++|...+++..+.... +. ..+|+.+...|...|++++|...|++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 334444445555555555544432110 11 22445555555555555555555554431 1 0000 113445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhccCCHHHH-HHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMG----LSL-DRQIYNSIIDTFGKYGELVEA-LEVFEKM 278 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 278 (532)
.+...|...|++++|...+++..+.. ... -..+|..+...|.+.|+.++| ...+++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55555555555555555555544321 000 134555555556666666555 4444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-06 Score=69.10 Aligned_cols=128 Identities=6% Similarity=-0.010 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345566667777777777777777776654 34566667777777777777777777777666432 3455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHcCCChHHHHHHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYG--KVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
...|++++|...|++..+.... +...+. .....+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677777777776666654221 222332 2222244455555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-07 Score=71.70 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
..+..+...+.+.|++++|.+.|++..... +.+...|..+..+|...|++++|...|++..+... .++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 456666677777788888888887777653 44667777777788888888888888887776532 2456677777778
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHH
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
.+.|++++|.+.|++..+ +.||..
T Consensus 115 ~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 888888888888888776 446654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-06 Score=65.77 Aligned_cols=97 Identities=8% Similarity=-0.134 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
..+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345566667777777777777777776654 44566666677777777777777777776666433 3455666666666
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 009556 193 VNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~ 211 (532)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.3e-06 Score=64.86 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4556666667777777777777777776543 34556666666677777777777777766665432 345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 009556 192 HVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~ 211 (532)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=76.59 Aligned_cols=187 Identities=10% Similarity=-0.078 Sum_probs=106.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASL-------IEALASVGRTLEADAIFQEMVCFGFNPK--------------- 146 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~~~~~g~~~~--------------- 146 (532)
+.++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788999999999988875 4556778777 4666666666666655555443 2221
Q ss_pred -------hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--H
Q 009556 147 -------LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN--S 217 (532)
Q Consensus 147 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~ 217 (532)
......+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123345556666777777777776665533 332244444556666677777776666433321 110 2
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455555566666666666666666654322132 223444445555666666666666666553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-06 Score=78.40 Aligned_cols=129 Identities=9% Similarity=-0.076 Sum_probs=68.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---------------LRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
...+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555433 111 345555555666666666666666655554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH-HHHHHHH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA-VGIVEEI 243 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~ 243 (532)
.. .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|+.+++ ...++.|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 34555555555666666666666666665554221 444555555555555555555 3344444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=78.37 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=71.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45566777777778888888888888877654 34667777777778888888888888877776533 45667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 009556 191 YHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=73.46 Aligned_cols=86 Identities=10% Similarity=-0.060 Sum_probs=44.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCC
Q 009556 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGR 197 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~ 197 (532)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777774444432 11124456666666667777777777766665541 111 123345555555666666
Q ss_pred hHHHHHHHHHHH
Q 009556 198 LDDTWLIINEMR 209 (532)
Q Consensus 198 ~~~a~~~~~~m~ 209 (532)
+++|.+.+++..
T Consensus 82 ~~~A~~~~~~al 93 (203)
T 3gw4_A 82 WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=6.8e-06 Score=64.29 Aligned_cols=118 Identities=5% Similarity=-0.149 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4455666666667777777777777766543 33556666666666666777777666666665432 345556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
+...|++++|...|++..+... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655422 134444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=70.88 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|++.|++..+.. +.+...+..+..+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 333444444444444444444444332 2334444444444444444444444444444332 22333444444444444
Q ss_pred CChhHHHHHHHHHH
Q 009556 161 GLLGLGSRLLMVME 174 (532)
Q Consensus 161 g~~~~A~~~~~~m~ 174 (532)
|++++|.+.|+...
T Consensus 103 g~~~~A~~~~~~al 116 (148)
T 2vgx_A 103 GELAEAESGLFLAQ 116 (148)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=9.7e-06 Score=62.06 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677777788888888888888877664 4466777777778888888888888888877654 3456677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+...|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777776643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-06 Score=64.42 Aligned_cols=98 Identities=13% Similarity=-0.028 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456677777888888888888888887764 4567788888888888888888888888888765 4456777788888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 009556 157 FLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~ 176 (532)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00014 Score=66.60 Aligned_cols=138 Identities=9% Similarity=0.040 Sum_probs=88.9
Q ss_pred HHcCChH-HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 88 CKLGDID-EAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 88 ~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
.+.|+++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556665 7888888888764 3445566655444444333 567777777777654 4566777776666
Q ss_pred HHhcCC--hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 009556 157 FLKKGL--LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 157 ~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 229 (532)
+.+.|+ +++++.+++.+.+... .|..+|+.-..++...|. ++++++.++++.+..+. |...|+.....+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 666663 6777777777777654 566677777666667776 47777777777766433 55566555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.8e-06 Score=65.03 Aligned_cols=100 Identities=7% Similarity=-0.091 Sum_probs=66.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 345566677777777777777777777776653 34566666677777777777777777777666432 3455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 009556 190 DYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..+.+.|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 6666777777777776666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-06 Score=66.26 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=93.0
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009556 99 LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI 178 (532)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 178 (532)
.|+++.... +.+...+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|...|++......
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455555442 3345677888899999999999999999998875 56788999999999999999999999999988654
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 179 CRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 179 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
.+...|..+..+|...|++++|.+.|++..+.
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998775
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.1e-06 Score=72.57 Aligned_cols=187 Identities=10% Similarity=-0.010 Sum_probs=117.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHhHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCcC---------------
Q 009556 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNIL-------LRGFLKKGLLGLGSRLLMVMEDMGICRN--------------- 181 (532)
Q Consensus 124 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------- 181 (532)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999875 4556778777 4555555555555554444333 2221
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CH
Q 009556 182 -------QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL--DR 252 (532)
Q Consensus 182 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 252 (532)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .| ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445667777888888888887776643 333244455556777778888877776544321 11 02
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 253 QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666777777777777777777764322133 234455666677777777777777777764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.7e-06 Score=62.31 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHhHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILL 154 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~li 154 (532)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455667777778888888888888877664 4456677777778888888888888888877654 33 466777777
Q ss_pred HHHHhc-CChhHHHHHHHHHHHcC
Q 009556 155 RGFLKK-GLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 155 ~~~~~~-g~~~~A~~~~~~m~~~~ 177 (532)
..+.+. |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.5e-06 Score=65.25 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|+...+.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445566677788888888888888887764 4567778888888888888888888888888765 4566777778888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 009556 157 FLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~ 176 (532)
|...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=63.05 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (532)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|++.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456777788888888888888888887764 45677788888888888888888888887765320 111 13455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566666666777777777666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.5e-06 Score=64.12 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG--ISPD----LVTYST 467 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 467 (532)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35556666777777777777777766543 3456667777777777777777777777765431 1111 124556
Q ss_pred HHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHH
Q 009556 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (532)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 501 (532)
+..++...|++++|++.|++..+ ..||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 66677777777777777777765 445654443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-05 Score=61.10 Aligned_cols=99 Identities=8% Similarity=-0.033 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566667777777777777777777766553 3456677777777777777777777777776643 22566677777
Q ss_pred HHHHhcCCcChHHHHHHHHHh
Q 009556 470 KAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~ 490 (532)
.++...|++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-05 Score=61.95 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (532)
.|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34555556666666666666666665543 3355666666666667777777777776666542 224556666666666
Q ss_pred hcCCcChHHHHHHHHHh
Q 009556 474 RAKKFHKVPEIYKQMES 490 (532)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (532)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777666665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=74.47 Aligned_cols=130 Identities=6% Similarity=-0.087 Sum_probs=70.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--------------QETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555555556666666666666666555432111 3555556666666666666666666655542
Q ss_pred CCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHH
Q 009556 213 FQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA-LEVFEKM 278 (532)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m 278 (532)
. .+...+..+..++...|++++|...|+++.+.. +.+...+..+...+.+.|+.++| ...|..|
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 145555555566666666666666666655543 22445555555555555655555 2344443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=68.89 Aligned_cols=129 Identities=10% Similarity=-0.036 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----------------ISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
...|..+...+.+.|++++|+..|++..+.. +.+. ..|..+..++...|++++|+..++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456777788888999999999999988753 1222 5677777777777888888888777776
Q ss_pred CCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH-HHHHHH
Q 009556 141 FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW-LIINEM 208 (532)
Q Consensus 141 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m 208 (532)
.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+...+...++.+++. ..+..+
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44566777777777777777777777777766432 34555666666665555554444 333333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-05 Score=65.24 Aligned_cols=101 Identities=8% Similarity=-0.034 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356678888889999999999999999988875 4578888999999999999999999999998875 45678888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999887753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.5e-06 Score=63.78 Aligned_cols=108 Identities=9% Similarity=0.034 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (532)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456777778888888888888888887764 45677777888888888888888888888775431 111 55666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
.+...+.+.|++++|.+.|+...+.. |+...+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 67777777777777777777776643 344444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-05 Score=62.34 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45667777777788888888888888777664 4456777777777778888888888887777654 345667777777
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~ 175 (532)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.4e-05 Score=58.23 Aligned_cols=98 Identities=13% Similarity=-0.011 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4456666677777777777777777776654 34566666677777777777777777777666432 345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 009556 192 HVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~ 211 (532)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=62.74 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI--SPD----LVTYS 466 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 466 (532)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777766543 34566677777777777777777777777765321 112 55667
Q ss_pred HHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 009556 467 TLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (532)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~ 510 (532)
.+..++...|++++|.+.+++..+ ..|+......+.......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 777777778888888888877776 345655555555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.4e-06 Score=65.63 Aligned_cols=98 Identities=17% Similarity=0.054 Sum_probs=68.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++...... .+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3445566667777788888888877777654 44666777777777777777777777777776543 455566677777
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 009556 192 HVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~ 211 (532)
+...|++++|.+.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-05 Score=61.60 Aligned_cols=100 Identities=14% Similarity=0.014 Sum_probs=84.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~ 150 (532)
.+...|..+...+.+.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45677888899999999999999999999876 355 6778888889999999999999999988764 4467788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
..+..++...|++++|.+.|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888999999999999998887753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0015 Score=59.81 Aligned_cols=188 Identities=7% Similarity=-0.027 Sum_probs=121.5
Q ss_pred hcCCH-HHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 124 SVGRT-LEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL----------LGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 124 ~~~~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
+.|.+ ++|+++++.+...+ +.+..+|+.--..+...+. +++++.+++.+....+ .+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 44555 47899999998765 3455566654444443333 5678888888877544 5677888777777
Q ss_pred HhcCC--hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----
Q 009556 193 VNAGR--LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM-WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY---- 265 (532)
Q Consensus 193 ~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 265 (532)
.+.++ +++++++++.+.+.... |..+|+.-.-.+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 77774 78888888888876543 66777766666777777 578888888888775 34777777666655544
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHC
Q 009556 266 ----------GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA-----------GDVAKALELFTQMQEQ 316 (532)
Q Consensus 266 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 316 (532)
+.++++++.++......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777766654322 555565443333333 2345666666666553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-05 Score=60.65 Aligned_cols=99 Identities=7% Similarity=0.019 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc--CHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR--NQETYEIL 188 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 188 (532)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+... . +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 34455556666666666666666666666543 33455566666666666666666666666655432 2 34555556
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHC
Q 009556 189 LDYHVNA-GRLDDTWLIINEMRSK 211 (532)
Q Consensus 189 i~~~~~~-~~~~~a~~~~~~m~~~ 211 (532)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.5e-05 Score=63.34 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (532)
.+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 2244445555555555555555555555554432 113444555555555
Q ss_pred hcCCcChHHHHHHHHHh
Q 009556 474 RAKKFHKVPEIYKQMES 490 (532)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (532)
..|++++|.+.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-06 Score=73.45 Aligned_cols=120 Identities=11% Similarity=-0.084 Sum_probs=59.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------HhHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----------------RFYN 151 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~----------------~~~~ 151 (532)
...|++++|.+.++.-.... ......+..+...+...|++++|.+.|++..+... .+. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHH
Confidence 34466666666555322210 12345667777888888999999999988886431 111 3444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 210 (532)
.+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|.+.|++..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444455555555555544444321 2333444444444444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=62.28 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.+-.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35567778889999999999999998875 5578888899999999999999999999998875 456778888889999
Q ss_pred hcCChhHHHHHHHHHHHc
Q 009556 159 KKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~ 176 (532)
+.|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.7e-05 Score=71.93 Aligned_cols=196 Identities=10% Similarity=-0.055 Sum_probs=123.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPS----------------SISYASLIEALASVGRTLEADAIFQEMVCFG-FNPK 146 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~~~ 146 (532)
.+.+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999987642111 1246778889999999999999888776421 1112
Q ss_pred h----HhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C--
Q 009556 147 L----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKG--F-- 213 (532)
Q Consensus 147 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-- 213 (532)
. .+.+.+...+...|+.+.|.++++..... +..+ -..++..+...|...|++++|..++++....- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333334444567888888887776532 2222 24466777888888888888888887765421 1
Q ss_pred Cc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 214 QL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG--LSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 214 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
.+ ...++..++..|...|++++|..+++...... ...+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 23456667777777777777777777665321 1111 2344555556666677777766665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00014 Score=56.59 Aligned_cols=94 Identities=16% Similarity=-0.011 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILL 154 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---~~~~~~li 154 (532)
-.+...+.+.|++++|+..|+++.+.. +.+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345666778888888888888887763 2233 467777788888888888888888887754 223 55677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.++.+.|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888887764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00014 Score=58.18 Aligned_cols=100 Identities=13% Similarity=-0.061 Sum_probs=77.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 184 (532)
+.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...|...|++++|...+++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 3456778888888889999999999999988754 44 56777788888888888888888888776532 35667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
|..+...+...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777888888888888888877765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=63.20 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH-PS----SISYASLIEALASVGRTLEADAIFQEMVCFG----FNP-K 146 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~~-~ 146 (532)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677788888889999998888887654100 11 1356777777788888888888887765421 001 1
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 334555666666667777776666665432 100 01223444444555555555555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.5e-05 Score=59.00 Aligned_cols=95 Identities=11% Similarity=-0.039 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++..+... .+...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4455666777788888888888777654 44667777777777777888888877777776543 355677777777777
Q ss_pred cCChHHHHHHHHHHHHC
Q 009556 195 AGRLDDTWLIINEMRSK 211 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~ 211 (532)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00026 Score=68.53 Aligned_cols=165 Identities=11% Similarity=-0.008 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCcCH----HhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHH
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNS----FVYGKVIGLYRDNGMWKKAVGIVEEIREM----GLSL-DRQI 254 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 254 (532)
+..+...|.+.|++++|.+.+..+...- ..++. .+.+.+-..+...|+++++..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555666666665555543210 00111 11122222333456666666666655432 2121 2445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HH
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GFYPD----PK 323 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~ 323 (532)
+..+...|...|++++|..+++++... +-.+ ....+..++..|...|++++|..++++.... .+..+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777766532 1111 2345677777788888888888887776532 11111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
.+..+...+...++++.|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455556667777877777666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-05 Score=57.91 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD---LVTYSTLMK 470 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 470 (532)
.+...+...|++++|.+.|+...+.. +.+. ..+..+..++...|++++|...|+++.+.... + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34455666677777777776665542 1122 35556666777777777777777776654211 2 445666666
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
++...|++++|.+.++++.+. .|+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 111 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ--YPGSDA 111 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCChH
Confidence 777777777777777777653 354443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=78.51 Aligned_cols=119 Identities=11% Similarity=-0.001 Sum_probs=92.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChh
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (532)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988874 4568889999999999999999999999999875 456788889999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDY--HVNAGRLDDTWLIIN 206 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 206 (532)
+|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887643 233455555555 777888888888887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.7e-05 Score=70.84 Aligned_cols=121 Identities=7% Similarity=-0.070 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL---------------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF 143 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 143 (532)
.|..+...+.+.|++++|++.|++..+. --+.+..+|..+..++.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3666777778888888888888877651 001233455555566666666666666666665543
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 201 (532)
+.+...+..+..+|...|++++|.+.|++..+... .+...+..+...+.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555666666666666666665555422 2344444444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.7e-05 Score=61.47 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPE--------G---------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
+......+.+.|++++|...|.+.... . -+.+...|..+..+|.+.|++++|...+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 334444555555555555555544432 0 01234567788888888899999999888888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 009556 458 ISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK-ARQILQSAL 507 (532)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~a~ 507 (532)
+.+...|..+..++...|++++|.+.|++..+ +.|+.. .....+..+
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 33577888888888899999999999888887 566654 444333333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0001 Score=60.33 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-------CC----------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GF----------HPSSISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
...+......+.+.|++++|+..|++.... +. +.+...|..+..++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998764 00 1223566777777777777777777777777
Q ss_pred HCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 140 CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 140 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 445667777777777777777777777777664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=8.8e-05 Score=72.38 Aligned_cols=88 Identities=7% Similarity=-0.126 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 009556 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY 227 (532)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 227 (532)
..|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4445555555555555555555555554332 24445555555555555555555555555543211 334444444555
Q ss_pred HcCCChHHHH
Q 009556 228 RDNGMWKKAV 237 (532)
Q Consensus 228 ~~~~~~~~a~ 237 (532)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=60.47 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=62.0
Q ss_pred HcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHH
Q 009556 89 KLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (532)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887753 13345667778888888888888888888887765 44567777788888888888888
Q ss_pred HHHHHHHHHc
Q 009556 167 SRLLMVMEDM 176 (532)
Q Consensus 167 ~~~~~~m~~~ 176 (532)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.6e-05 Score=61.03 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
+..+...+...|++++|.+.+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4444444444455555554444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.5e-05 Score=74.85 Aligned_cols=117 Identities=9% Similarity=0.019 Sum_probs=60.6
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (532)
+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555556666555555542 2235555666666666666666666666655542 33455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcChHHHHHH
Q 009556 447 LSVYHLMKDIGISPDLVTYSTLMKA--FIRAKKFHKVPEIYK 486 (532)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 486 (532)
.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666654321 122233333333 555566666666655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=58.12 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=52.0
Q ss_pred cCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009556 370 YGRFRDPEECIAALKLEG--LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (532)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|.+.+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777666543 12234456666666777777777777777766553 334566666677777777777777
Q ss_pred HHHHHHHHC
Q 009556 448 SVYHLMKDI 456 (532)
Q Consensus 448 ~~~~~m~~~ 456 (532)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=57.03 Aligned_cols=95 Identities=16% Similarity=0.028 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------H-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--------S-----ISYASLIEALASVGRTLEADAIFQEMVCF--- 141 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 141 (532)
..+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345666777888899999999999887763 32 2 26667777777777777777777766654
Q ss_pred ----CCCCChHhH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 142 ----GFNPKLRFY----NILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 142 ----g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
. +.+...| .....++...|++++|+..|++..+
T Consensus 90 ~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2233344 4555555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0011 Score=66.18 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=127.4
Q ss_pred HcCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 89 KLGD-IDEAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 89 ~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
+.|+ .++|++.++++...+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 467899999998875 4556778877777777776 889999999998765 56778888888888
Q ss_pred HhcC--ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC----
Q 009556 158 LKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---- 230 (532)
Q Consensus 158 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---- 230 (532)
.+.| +++++++.++++.+... .|..+|+.-..++.+.| .++++++.++++.+..+. |..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 8888 66999999999988765 67888888888888888 788888888888776544 667777666655542
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 231 ----------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 231 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
+.++++.+.++.+.... +-+...|+-+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666554 3355666666666655554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.3e-05 Score=70.65 Aligned_cols=147 Identities=9% Similarity=-0.008 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 4555666666777788888777776654 233221 11122222222111 0 125666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL-YRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~ 237 (532)
+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776532 45667777777777777888887777776554211 33344444433 23345566677
Q ss_pred HHHHHHHHc
Q 009556 238 GIVEEIREM 246 (532)
Q Consensus 238 ~~~~~~~~~ 246 (532)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00031 Score=68.54 Aligned_cols=146 Identities=10% Similarity=-0.068 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...|..+...+.+.|++++|...|++..+.. |+...+ . -+... .... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHHH----HHHHHHHHHHHH
Confidence 3455666666666777777777776666432 111000 0 00000 1110 124577888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (532)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+++.+.. +.+...+..+...+.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988888876432 67778888888888999999999998888764 23556777788888888887776
Q ss_pred HH-HHHHHHh
Q 009556 272 LE-VFEKMQQ 280 (532)
Q Consensus 272 ~~-~~~~m~~ 280 (532)
.+ .+..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 63 4555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00027 Score=66.66 Aligned_cols=138 Identities=7% Similarity=-0.045 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+..+...+.+.|++++|++.|++..+.- +.. ......+.+.+ .. +.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~----~~----~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK----LQ----PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG----GH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH----HH----HHHHHHHHHHHHHHH
Confidence 46677888889999999999998887520 000 00000000000 00 023445666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
+.|++++|++.+++..+... .+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+.+.++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766666665432 245566666666777777777777777666653 2255566666666666666655543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.2e-05 Score=56.86 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------hH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-------LR 148 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-------~~ 148 (532)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|++.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 44567778888888899999999998888764 4567788888888888899999999888888754 33 44
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLM 171 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~ 171 (532)
.+..+..++...|+.+.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555666666666655554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0037 Score=62.47 Aligned_cols=172 Identities=8% Similarity=0.032 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--
Q 009556 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM----------WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG-- 266 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 266 (532)
++|++.++++...... +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4555555555544222 23334333333333333 566666666666654 235566666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------
Q 009556 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG-DVAKALELFTQMQEQGFYPDPKIFITIISCLGEL---------- 335 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------- 335 (532)
+++++++.++++.+.... +...|+.-...+.+.| .++++++.++++.+.. +-|...|......+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 556677777666665433 5666666666666666 6666666666666543 22445554444444332
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCccc
Q 009556 336 ----GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRD 375 (532)
Q Consensus 336 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 375 (532)
+.++++.+.+..+.... +.+...|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44677888888777765 5567788887777777776444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00014 Score=67.84 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
...+..+...+.+.|++++|...|.+..+.. |+... +...++.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 4556666677778888888888888877653 22111 11222222222211 1 1257778888
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCcC
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKA-FIRAKKFH 479 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 479 (532)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888887653 446778888888889999999999988888764 333 3344444444 23455667
Q ss_pred hHHHHHHHHHh
Q 009556 480 KVPEIYKQMES 490 (532)
Q Consensus 480 ~a~~~~~~m~~ 490 (532)
++.++|+.|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 77888888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00025 Score=69.12 Aligned_cols=87 Identities=15% Similarity=-0.039 Sum_probs=46.8
Q ss_pred HHcCChHHHHHHHHHHHHcC---C---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHhHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALG---F---HP-SSISYASLIEALASVGRTLEADAIFQEMVCF-----G-FNPK-LRFYNIL 153 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~---~---~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~~~-~~~~~~l 153 (532)
..+|++++|+.++++..+.. + .| ...+++.|..+|...|++++|..++++.++. | -.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35566777766666654421 1 11 1335666666666666666666666665431 2 0121 2345555
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~ 174 (532)
...|...|++++|..++++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666665555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0023 Score=50.45 Aligned_cols=109 Identities=11% Similarity=0.004 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALE 273 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 273 (532)
+++|++.|++..+.| .|+.. +...|...+..++|.++|++..+.| +...+..|...|.. .++.++|.+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444555555544443 11111 3333444444444555555554443 44444444444444 445555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 009556 274 VFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQG 317 (532)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 317 (532)
.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555554442 34444445555544 455555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00069 Score=48.68 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666777777778888887777776654 3456667777777777777777777777776653 3345555555554
Q ss_pred HHh
Q 009556 157 FLK 159 (532)
Q Consensus 157 ~~~ 159 (532)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0011 Score=53.15 Aligned_cols=97 Identities=9% Similarity=-0.105 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----Ch-----HhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFN-P-----KL-----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----- 176 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-~-----~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 176 (532)
..+......+.+.|++++|++.|++.++.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34566677788889999999999988865311 0 11 25666666666666666666666665553
Q ss_pred CCCc-CHHHH----HHHHHHHHhcCChHHHHHHHHHHH
Q 009556 177 GICR-NQETY----EILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 177 ~~~~-~~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
.+.| +...| .....++...|++++|+..|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 0012 23344 445555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00036 Score=53.11 Aligned_cols=79 Identities=13% Similarity=-0.036 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 009556 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (532)
+|++.|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776654 4567777888888888888888888888887764 4456677778888888888888888887776
Q ss_pred H
Q 009556 175 D 175 (532)
Q Consensus 175 ~ 175 (532)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=9.4e-05 Score=55.84 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-------LVTY 465 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~ 465 (532)
..+..+...+...|++++|.+.+++..+.. +.+...|..+..++...|++++|.+.+++..+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 345555666666666666666666665542 335566666666666777777777776666653 232 3344
Q ss_pred HHHHHHHHhcCCcChHHHHH
Q 009556 466 STLMKAFIRAKKFHKVPEIY 485 (532)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~ 485 (532)
..+..++...|+++.|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555555554433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0023 Score=50.48 Aligned_cols=77 Identities=10% Similarity=-0.067 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh----cCChhHH
Q 009556 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK----KGLLGLG 166 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 166 (532)
+++++|++.|++..+.| .++. . +...|...+..++|.++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34455555555555444 1211 1 3344444444444555555544432 33334444444444 3444444
Q ss_pred HHHHHHHHH
Q 009556 167 SRLLMVMED 175 (532)
Q Consensus 167 ~~~~~~m~~ 175 (532)
.+.|++..+
T Consensus 81 ~~~~~~Aa~ 89 (138)
T 1klx_A 81 AQYYSKACG 89 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00034 Score=68.22 Aligned_cols=123 Identities=9% Similarity=0.060 Sum_probs=55.8
Q ss_pred HccCCHHHHHHHHHHHHhc-------CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc-----CC-CC-CHHHHHHH
Q 009556 333 GELGKWDVIKKNFENMKDR-------GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE-----GL-QP-SGSMFCIL 398 (532)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l 398 (532)
...|++++|..++++.++. ..+....+++.|..+|...|++++|+.++++..+. |. .| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666666555554432 11112334555555555555555555555544321 10 11 12334555
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEP-----EGI-EPNL-VMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
...|...|++++|..++++..+ .|. .|+. .+.+.+-.++...+.+++|..++.++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554332 110 1111 2233444455555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00042 Score=55.37 Aligned_cols=99 Identities=10% Similarity=0.000 Sum_probs=75.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT----------LEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 46678999999999998886 66888999888888888765 48888888888875 44677888888888
Q ss_pred HhcC-----------ChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 158 LKKG-----------LLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 158 ~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
...| ++++|.+.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 778888888877764 355444443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0017 Score=49.28 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 376 PEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444332 2233444444444555555555555554444332 2233444444445555555555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0019 Score=46.19 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456666667777777777777777776554 34556666666677777777777777776665432 234444444444
Q ss_pred HH
Q 009556 192 HV 193 (532)
Q Consensus 192 ~~ 193 (532)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00056 Score=54.64 Aligned_cols=70 Identities=4% Similarity=-0.090 Sum_probs=32.5
Q ss_pred hcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 009556 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC----------EQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (532)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (532)
+.+++++|.+.++...+.+ +.+...|..+..++...+++ ++|+..|++..+.. +-+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3444555555555555543 23444555555555554432 34444444444432 223344444444444
Q ss_pred hc
Q 009556 439 VA 440 (532)
Q Consensus 439 ~~ 440 (532)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0025 Score=46.89 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456666666667777777777777766654 33455666666677777777777776666553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0037 Score=45.96 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=42.0
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666667777777777777777766654 33455666666666667777777666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.019 Score=52.79 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHH
Q 009556 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 502 (532)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...|+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 4466666666666666677777777777777654 5666666666677777777777777777766 5566665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.095 Score=55.03 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (532)
..++..+.+.|.+++|.++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555566666666666665442111 1122344567777777765443 2566777777777777
Q ss_pred CCHHHHHHHHHHHH
Q 009556 301 GDVAKALELFTQMQ 314 (532)
Q Consensus 301 g~~~~A~~~~~~m~ 314 (532)
++++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777777653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.053 Score=49.86 Aligned_cols=143 Identities=12% Similarity=0.006 Sum_probs=94.1
Q ss_pred CCCHhHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh---cC-Ch-hH---HHHHHHHHHH
Q 009556 109 HPSSISYASLIEALA--SVG---RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK---KG-LL-GL---GSRLLMVMED 175 (532)
Q Consensus 109 ~~~~~~~~~li~~~~--~~~---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g-~~-~~---A~~~~~~m~~ 175 (532)
+.+...|...+++.. ..+ +..+|..+|++..+.. +.....|..+.-+|.. .+ .. .. ....++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 567778887776654 223 3577899999998764 2334455544444421 11 11 11 1112222111
Q ss_pred c-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 176 M-GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 176 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 124567788888777777899999999999998875 67777878888889999999999999998886 456656
Q ss_pred HH
Q 009556 255 YN 256 (532)
Q Consensus 255 ~~ 256 (532)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.096 Score=55.00 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=99.4
Q ss_pred HHHHHcCChHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 85 QYCCKLGDIDEAMA-LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 85 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456789999877 54221 112233777888888999999887663211 113445678999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886543 4677899999999999999999999988743 334555555566666655555555
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 244 REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
...|. ++....+|.+.|++++|++++.++
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44431 233334455556666665555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.026 Score=40.92 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=49.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
....+.+.|++++|++.|+++.+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4556778899999999999988874 45667 88888999999999999999999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.019 Score=41.37 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 425 PNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 425 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
.|...+..+..++...++ .++|..++++..+... -++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666554443 5667777776665432 24555666666667777777777777777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.018 Score=55.16 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=49.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCC----ChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-Cc-CHHHHH
Q 009556 121 ALASVGRTLEADAIFQEMVCFG---FNP----KLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CR-NQETYE 186 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~ 186 (532)
.+.+.|++++|++++++..+.. +.| ...+++.|...|...|++++|..++++.... |. .| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665321 111 1245566666666666666666666655432 21 12 233566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
.|...|...|++++|..++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66677777777777777666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.01 Score=56.72 Aligned_cols=85 Identities=11% Similarity=-0.057 Sum_probs=45.4
Q ss_pred cCChHHHHHHHHHHHHcC---CCC---C-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHhHHHHHH
Q 009556 90 LGDIDEAMALLAQMQALG---FHP---S-SISYASLIEALASVGRTLEADAIFQEMVCF-----G-FNPK-LRFYNILLR 155 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~---~~~---~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~~~-~~~~~~li~ 155 (532)
.|++++|+.++++..+.. +.| + ..+++.+..+|...|++++|..++++.++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356667777666654421 111 1 245666666666667777666666665531 2 1122 234555555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~ 174 (532)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5555666655555555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.019 Score=45.29 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcChHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIGISP--DLVTYSTLMKAFIRAKKFHKVPE 483 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 483 (532)
..+.+-|.+....+ .++..+...+..++++.+ +.+++..+|++..+.. .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555554444 467777777777888877 5567888888777653 23 34455566677788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 484 IYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 484 ~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
.++.+.+ +.|+..--..|.+.+
T Consensus 93 y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 93 YVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHh--cCCCCHHHHHHHHHH
Confidence 8888887 677654444444333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.018 Score=55.10 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhccC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPE---GIEPN----LVMLNVLINAFGVAGKYKEALSVYHLMKD-----IG-ISPDL-VT 464 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~ 464 (532)
+..+...|++++|.+++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+ .| ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888887776532 12222 34677888888888888888888887753 12 12332 36
Q ss_pred HHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 465 YSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887763
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.016 Score=55.42 Aligned_cols=83 Identities=8% Similarity=-0.138 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CcC-HHHHHHHHHH
Q 009556 126 GRTLEADAIFQEMVCF---GFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CRN-QETYEILLDY 191 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~ 191 (532)
|++++|..++++.++. -+.|+ ..+++.|...|...|++++|..++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555666665555431 11111 234555555555555555555555554321 11 111 2234444444
Q ss_pred HHhcCChHHHHHHHHHH
Q 009556 192 HVNAGRLDDTWLIINEM 208 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m 208 (532)
|...|++++|..++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555554444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.041 Score=39.83 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLR-FYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
....+...|++++|.+.|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777777654 33455 67777777777777777777777776653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.11 Score=38.21 Aligned_cols=66 Identities=9% Similarity=-0.083 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALG------FHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
+...+-.+...+.+.|++..|+..|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455667777777888888888777765531 1234556677777777777777777777777654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.15 Score=36.47 Aligned_cols=66 Identities=15% Similarity=0.013 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 76 SGNSYNKSIQYCCKLGD---IDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
|+..+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|+..|+.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34445555555544433 567777777766654 4455666666666667777777777777766653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.1 Score=38.35 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMKDIG------ISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
.-.+...+.+.|+++.|...|++..+.- -.+....+..|..++.+.|++++|...+++..+ +.|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3455555566666666666665554320 112344556666666666666666666666655 44543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.76 Score=37.16 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
..+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34456666665555443 2445566666666666666666666555432 22333334444555444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
.++-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443333331 23333344445566665555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.58 Score=35.60 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
.++.+...|+-++-.+++..+.. +-+|++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444444221 123333334444444444444444444444444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.32 Score=42.91 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc-CCh
Q 009556 93 IDEAMALLAQMQALGFHPS---SISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK-GLL 163 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~ 163 (532)
...|...+++..+.. |+ ...|..+...|.. .|+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356666777777653 44 4567777777777 378888888888877765222366677777777774 777
Q ss_pred hHHHHHHHHHHHcCCC--cCHHHHH
Q 009556 164 GLGSRLLMVMEDMGIC--RNQETYE 186 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~--~~~~~~~ 186 (532)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888777776544 4443333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.21 Score=39.38 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHhcCChhHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALASVG---RTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~ 167 (532)
...+.+-|.+..+.| .++..+...+..++++.+ +.++++.+++...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666677666665 477888888888888887 5668889998888764 24 3455566677778889999999
Q ss_pred HHHHHHHHc
Q 009556 168 RLLMVMEDM 176 (532)
Q Consensus 168 ~~~~~m~~~ 176 (532)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888874
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.78 Score=34.90 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=78.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHH
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 377 (532)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+. .|. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 4457777777777776653 24455566655555555555555555554332 111 1233333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
..+-.+ ..+.......++.....|.-++-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 332221 112233455566666777777777777775332 25666767777777777777777777777777666
Q ss_pred CC
Q 009556 458 IS 459 (532)
Q Consensus 458 ~~ 459 (532)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.41 Score=42.19 Aligned_cols=91 Identities=7% Similarity=-0.022 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCh
Q 009556 128 TLEADAIFQEMVCFGFNPK---LRFYNILLRGFLK-----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRL 198 (532)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~ 198 (532)
...|..++++..+.. |+ -..|..+...|.+ .|+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 455666777776653 44 4577777777777 478888888888887765433467777777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--cCHHhH
Q 009556 199 DDTWLIINEMRSKGFQ--LNSFVY 220 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~--~~~~~~ 220 (532)
+++.+.+++....... |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888776555 444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.47 Score=36.92 Aligned_cols=54 Identities=4% Similarity=-0.041 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 215 (532)
++.++|.++|+.+.+.+-.- ...|......=.+.|+++.|.+++.+....+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665442222 4555555555566666666666666666655443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=1.3 Score=35.83 Aligned_cols=19 Identities=0% Similarity=-0.137 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQL 417 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~ 417 (532)
...+...|+++++.++|.+
T Consensus 96 f~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 3334444455555444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.8 Score=35.67 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 009556 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG 422 (532)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 422 (532)
++.++|.++|+.+.+..-.. ...|.....--.++|++..|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432121 3444444444445555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.00031 Score=65.94 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
+..|..|..+..+.+.+.+|++.|=+. .|+..|..+|.+..+.|.+++-+..+...++. ..+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 345777777777777777776554222 25556667777777777777777766655543 2344455667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------------------CCCcC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--------------------GFQLN 216 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~ 216 (532)
|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+..- .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777776655433321 145555555556666666655555554433110 00124
Q ss_pred HHhHHHHHHHHHcCCChHHHHH
Q 009556 217 SFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
..||..+-.+|...+.+..|.-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTH
T ss_pred hhHHHHHHHHHhCchHHHHHHH
Confidence 5566666667766666655543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.26 Score=37.31 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcChHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE---ALSVYHLMKDIGISP--DLVTYSTLMKAFIRAKKFHKVPE 483 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 483 (532)
..+.+-+.+....| .++..+--.+..++.+.....+ ++.++++..+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344444443333 3566666666677777666555 666777666543 12 22334455667777777777777
Q ss_pred HHHHHHhCCCCCCHH
Q 009556 484 IYKQMESSGCTPDRK 498 (532)
Q Consensus 484 ~~~~m~~~g~~p~~~ 498 (532)
.++.+.+ +.|+..
T Consensus 96 ~~~~lL~--~eP~n~ 108 (126)
T 1nzn_A 96 YVRGLLQ--TEPQNN 108 (126)
T ss_dssp HHHHHHH--HCTTCH
T ss_pred HHHHHHH--hCCCCH
Confidence 7777776 566543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.0019 Score=60.77 Aligned_cols=217 Identities=15% Similarity=0.166 Sum_probs=143.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-|+..|..+|....+.|.+++-+..+...++. ..++..=+.|+-+|++.++..+-.+++ ..|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 46677899999999999999999988877765 345555668999999999876544332 146666667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC--------------------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMG--------------------ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
.-|...|.++.|.-+|..+..-. -.-++.||-.+-.+|...+++.-|.-.--.+.-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 77888887777777666543211 1246678999999999999887776554444322
Q ss_pred cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCC------CH
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRP------DI 287 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p------~~ 287 (532)
..-...++..|-..|.+++-+.+++...... ......|+-|.-.|+|-. .++..+.++..-.+ +++. ..
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1122345566778888888888888776332 346777888887777763 34444444332221 1211 23
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 009556 288 VTWNSLIRWHCKAGDVAKAL 307 (532)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~ 307 (532)
..|..++-.|.+-.+++.|.
T Consensus 305 hLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHH
Confidence 34677777777777777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.7 Score=34.93 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=60.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChHhHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE---ADAIFQEMVCFGFNP--KLRFYNILLRGF 157 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~~g~~~--~~~~~~~li~~~ 157 (532)
++..-.....+..+.+-|.+....| .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 3444444455566667777666655 3677777777778887776655 788888877654 23 233444566677
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 009556 158 LKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~ 176 (532)
.+.|+++.|.+.++.+.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 7888888888888877764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.62 Score=43.79 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-----DIGISPDLV 463 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~ 463 (532)
...++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|.+.|+++. +.|+.|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3444555566666666666666655442 3455566666666666666666666666654 236666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.79 E-value=14 Score=38.64 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=154.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQI--YNSIIDTFGKYGELVEALEVFEKMQQESI-------RPDIVTWNSLIRW 296 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 296 (532)
+....|+.++++.+++.....+...+..+ -..+.-+....|..+++.+++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34567777777777766554211123332 22333344555655567777766554211 0111222233333
Q ss_pred HHHcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH--h
Q 009556 297 HCKAGD-VAKALELFTQMQEQGFYPDPKI--FI--TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG--Q 369 (532)
Q Consensus 297 ~~~~g~-~~~A~~~~~~m~~~~~~~~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~ 369 (532)
++-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++.+++ .
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 246666666666532 2211 22 22333456678888888887776542 3344444444444 7
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (532)
.|+.+.+..+++.+.... .|....-. .+.-+|+-.|+.....+++..+.+.. ..++.....+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 799999999998887642 23222222 23445677789888888998887642 233333333334555577777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-ChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKF-HKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
++++.+.+.+ .|.+..-..+.-+....|.. .++..++..+.. .+|..+....+-++-..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcC
Confidence 8887666653 45555445555566666665 468888888873 56777666666666555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.93 Score=42.57 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCcCHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED-----MGICRNQETYEI 187 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~ 187 (532)
...++..+...|++++|...+..+.... +.+...|..++.++.+.|+..+|++.|+...+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456666777777777777777776554 45667777788888888888888777777643 477777765443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.06 E-value=1.9 Score=30.76 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.+ +.+...+|..+++-+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 3344444555555555666666666666666666666666666665533 222233454444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.42 E-value=1.8 Score=44.26 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHhH-H-HHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-ChH-
Q 009556 81 NKSIQYCCKLGD-IDEAMALLAQMQALGFHPSSIS-Y-ASLIEALASVG-RTLEADAIFQEMVCF------GFNP-KLR- 148 (532)
Q Consensus 81 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~-~-~~li~~~~~~~-~~~~A~~~~~~~~~~------g~~~-~~~- 148 (532)
..+++.+...++ ++.|+.+|+++.... |...+ + ..++..+...+ +--+|.+++.+..+. ..++ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 444444445566 588999999998874 43333 2 22333332222 223355555544321 1111 111
Q ss_pred ---------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009556 149 ---------FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 149 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
....=.+.+...|+++.|+++-++.....+ -+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455678999999999999887532 457799999999999999999999888873
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.75 E-value=14 Score=35.19 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHhcc----CCCCCC--HHH
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQP-S----GSMFCILANAYAQQGLCEQTVKVLQLMEP----EGIEPN--LVM 429 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~ 429 (532)
..|...|...|++.+|.+++..+...-... + ...+...++.|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445566666666666666666654321111 1 12344555666666777777666665431 111222 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
+...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666777777666666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.39 E-value=2 Score=43.91 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
.-+...|+++-|+++.++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34555677777777777776652 345677777777777777777777777665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.35 E-value=3.4 Score=31.29 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
.-+..+-++.+...++.|++....+.+++|.+.+++..|.++++-.+.+ +.+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3344555555566667777777777777777777777777777777643 333344566665554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.13 E-value=5.6 Score=30.20 Aligned_cols=78 Identities=5% Similarity=-0.080 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHH
Q 009556 424 EPNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 500 (532)
.|+..+--.+..++.+..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 56777666677777777654 45777888777654222344566777788889999999999888887 67766544
Q ss_pred HHH
Q 009556 501 QIL 503 (532)
Q Consensus 501 ~~l 503 (532)
..|
T Consensus 115 ~~L 117 (134)
T 3o48_A 115 GAL 117 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.11 E-value=28 Score=36.49 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=104.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC---H--HHHHHHHHHHH
Q 009556 263 GKYGELVEALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQGF--YPD---P--KIFITIISCLG 333 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~---~--~~~~~ll~~~~ 333 (532)
...|+.++++.+++.....+...+ +..=..+.-+....|..+++.+++.......- .-+ . ..-..+.-++.
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 345566666666655443210112 22223333445556665667776666553211 001 1 11112222222
Q ss_pred ccCC-HHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCH
Q 009556 334 ELGK-WDVIKKNFENMKDRGHGKIG--AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILAN--AYAQQGLC 408 (532)
Q Consensus 334 ~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 408 (532)
-.|. -+++...+..+...... .. ..--++...+.-.|+.+....++..+.+.. +..+...+.- ++...|+.
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 2232 23444444444432211 11 111123333445566666666666655432 2233333333 34456777
Q ss_pred HHHHHHHHHhccCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVML--NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYK 486 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (532)
+.+..+++.+.... .|....- .++..+|+-.|+.....++++.+.+. ...++.....+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 77777777766531 2222211 23344566777877777788877764 22233333333334555677777777776
Q ss_pred HHHhC
Q 009556 487 QMESS 491 (532)
Q Consensus 487 ~m~~~ 491 (532)
.+.+.
T Consensus 619 ~L~~~ 623 (963)
T 4ady_A 619 LLSKS 623 (963)
T ss_dssp TGGGC
T ss_pred HHHhc
Confidence 66553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.10 E-value=3.4 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++.+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555556666666667777777777777777777777777777666432 222344554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.81 E-value=12 Score=40.80 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 138 (532)
++..+.+.+.++.|.++.... +.++..--.+..++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444555556655555443322 223333334455666667777777766553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.69 E-value=21 Score=38.97 Aligned_cols=216 Identities=10% Similarity=0.047 Sum_probs=132.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----C----------------
Q 009556 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR----G---------------- 352 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---------------- 352 (532)
++..+...+.++-+.++..-. +.++..--.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455566666555543322 234444445666788899999999999765311 0
Q ss_pred --CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 353 --HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 353 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
...-..-|..++..+.+.+.++.+.++-+...+.....+. ..|..+..++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0111234677888899999999999888777654332222 258888999999999999999998776543 34
Q ss_pred HHHHHHHHHHHHhcCCHHH------------HHHHHHHHH-HC-CCCCCHHHHHHHHHHHHhcCCcChHHHH-HHHHHhC
Q 009556 427 LVMLNVLINAFGVAGKYKE------------ALSVYHLMK-DI-GISPDLVTYSTLMKAFIRAKKFHKVPEI-YKQMESS 491 (532)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~------------A~~~~~~m~-~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 491 (532)
...+..|+...+..|..+. ..+++..-. .. .+...+.-|..|-.-+...|++..|-.+ |+...+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 5667778877777665444 344443221 11 1111223466677777788888776554 5555432
Q ss_pred C---CCC-------CHHHHHHHHHHHHHHhhhhh
Q 009556 492 G---CTP-------DRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 492 g---~~p-------~~~t~~~l~~a~~~~~~~~~ 515 (532)
+ -.+ -...|-+++++|.-.+.+.+
T Consensus 1051 ~~~~~~~~~~~~~~q~~~yL~~INaLslvd~~~a 1084 (1139)
T 4fhn_B 1051 ISTTELIGKKERTFIIEHYLIVLNTLELLPKEDT 1084 (1139)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred hhccccccchhHHHHHHHHHHHHHHHhcCChhhC
Confidence 1 111 12467778888877765443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.38 E-value=10 Score=30.10 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSS-------ISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
+-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455778889999999999888865432 12332 2566778899999999999999999753
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.31 E-value=13 Score=35.28 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCcCHHH--HH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQET--YE 186 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~--~~ 186 (532)
+...+...+.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666666677777777777666643 22223455666666666677777766666665432 21122111 00
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~ 210 (532)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111122345677777776666543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.10 E-value=13 Score=28.16 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
|.-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++++-+..+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555566666666778888888888888888888888888887776543 223445655544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.95 E-value=16 Score=28.20 Aligned_cols=78 Identities=5% Similarity=-0.080 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHH
Q 009556 424 EPNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 500 (532)
.|+..+--.+..++.+..+. .+++.++++..+.+..-.....-.|.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 46666666667777776654 45677777776643222333445566788888888888888888887 66765443
Q ss_pred HHH
Q 009556 501 QIL 503 (532)
Q Consensus 501 ~~l 503 (532)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.12 E-value=33 Score=30.71 Aligned_cols=111 Identities=5% Similarity=-0.082 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCChHhHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAI----FQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~g~~~~~~~~~~li~ 155 (532)
|.++..-|.+++++++|++++..- ...+.+.|+...|-++ .+-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555555555544331 2223344555444443 334445566666666666666
Q ss_pred HHHhcCChh-HHHHHHHHHH----HcC--CCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 156 GFLKKGLLG-LGSRLLMVME----DMG--ICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 156 ~~~~~g~~~-~A~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
.+.....-+ .=.++.+++. +.| ..-++.....+...|.+.+++.+|..-|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 555432211 1122222222 221 1134455555666666666666655544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.03 E-value=18 Score=34.34 Aligned_cols=62 Identities=5% Similarity=-0.162 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009556 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDM--GICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
.+...+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35667778888888888888888887754 233344566677777777777777777776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.27 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.26 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.77 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.05 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.62 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.81 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.32 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.27 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.58 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.7 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.71 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.68 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.8e-21 Score=185.36 Aligned_cols=383 Identities=15% Similarity=0.057 Sum_probs=289.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...+.+.|++++|++.|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4566788999999999999998874 4567889999999999999999999999998865 4567889999999999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+++|.+.+....+... .+...+..........+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 9999999999888654 44445555555566666666666665555544322 444455556667777888888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
..... +.+...+..+...+...|+.++|...+++..+... -+...|..+...+...|++++|+..+++..... ..+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 77654 34667778888888888999999998888776532 256678888888888899999988888887654 3456
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (532)
..+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 677777788888888888888888887764 4456777778888888888888888888776654 45666777777788
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 009556 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKK 477 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 477 (532)
...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|.+.|++..+. .| +...|..+..+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888777653 335667777778888888888888888877764 34 45677777777777664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.9e-20 Score=178.14 Aligned_cols=382 Identities=14% Similarity=0.058 Sum_probs=312.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
+...+.+.|++++|.+.++++.+.. +.+...+..+..+|.+.|++++|...|++..+..+ .+..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 4566778899999999999998765 45678899999999999999999999999988653 467789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
+++|.+.+......... +..............+....+............ ................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 99999999999886433 444455555555566666666666665555443 3444555566677788888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 009556 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (532)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (532)
...... .+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+....... +.+.
T Consensus 161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 766532 356778888899999999999999999988753 3356788889999999999999999999998875 4567
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 788889999999999999999999998764 3467788999999999999999999999887764 66788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHh
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~~~ 511 (532)
...|++++|.+.|++..+.. +-+..++..+..++.+.|++++|.+.|++..+ +.|+ ...+..+..++...+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999998753 23567889999999999999999999999987 6775 567888888776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.8e-13 Score=122.05 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=143.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|.+..+.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556789999999999999999875 5568899999999999999999999999998865 456788899999999999
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHhHHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICRNQET----------------YEILLDYHVNAGRLDDTWLIINEMRSKGF-QLNSFVYGKVI 224 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~----------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll 224 (532)
++++|.+.++....... +... ....+..+...+...+|.+.|.+...... .++..++..+.
T Consensus 102 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTP--AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTST--TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhcc--chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999999999887532 2111 01111122233344455555555443321 12344444555
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 009556 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (532)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (532)
..+...|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.|++..+... -+..+|..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555555443 22344555555555555555555555555544311 13444555555555555555
Q ss_pred HHHHHHHHHH
Q 009556 305 KALELFTQMQ 314 (532)
Q Consensus 305 ~A~~~~~~m~ 314 (532)
+|++.|++..
T Consensus 258 ~A~~~~~~al 267 (323)
T d1fcha_ 258 EAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.9e-12 Score=117.77 Aligned_cols=228 Identities=13% Similarity=0.047 Sum_probs=152.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
.....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|++..+..+ -+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45667889999999999999999875 45688999999999999999999999999988653 46778899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHh----------------HHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 009556 197 RLDDTWLIINEMRSKGFQLNSFV----------------YGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDRQIYNSII 259 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~~~~~----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li 259 (532)
++++|.+.+++...... +... ....+..+...+.+.++.+.+....+... ..+..++..+.
T Consensus 102 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTP--AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTST--TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhcc--chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999999999876532 1111 00111122233445556666655554322 23455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..+...|++++|+..|++...... -+...|..+...+...|++++|.+.|++..+.. +-+...+..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence 666666666666666666554322 145556666666666666666666666665532 123455556666666666666
Q ss_pred HHHHHHHHHHh
Q 009556 340 VIKKNFENMKD 350 (532)
Q Consensus 340 ~a~~~~~~~~~ 350 (532)
+|...|++.++
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.9e-09 Score=93.90 Aligned_cols=216 Identities=8% Similarity=-0.009 Sum_probs=167.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
...|+.+-..+.+.+.+++|+++++++.+.+ +-+...|+....++...| ++++|++.++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4567777778889999999999999999985 566778999999988876 5899999999998875 567889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC---
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM--- 232 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--- 232 (532)
.+.+.|++++|++.++++.+... .+...|..+...+.+.|++++|++.++++.+.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 99999999999999999998654 57889999999999999999999999999987433 66777777666666554
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 009556 233 ---WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHC 298 (532)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~ 298 (532)
+++|.+.+..+.+.. +.+...|+.+...+...| .+++.+.++...+.... .+...+..++..|.
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 567888888887765 346777777766655443 46666766666543222 23445555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=5.5e-09 Score=94.49 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALASV--------------GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------------~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.+.+..+|+++...- +.++..|..-+.-+-.. +..++|..+|++..+...+.+...|...+....
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345677788776652 45566666655544322 335778888888886554556677788888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH-HHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG-LYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~ 237 (532)
+.|+++.|..+|+.+.+.........|...+....+.|+.+.|.++|++..+.+.. +...|..... -+...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 88888899888888877544334557888888888888888888888888776433 3333333332 234567888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRP--DIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
.+|+.+.+.. +.+...|...++.+.+.|+.+.|..+|++..... ..| ....|...+.--...|+.+.+.++++++.
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887763 4467778888888888888888888888876653 222 24567777777677788888888887776
Q ss_pred H
Q 009556 315 E 315 (532)
Q Consensus 315 ~ 315 (532)
+
T Consensus 269 ~ 269 (308)
T d2onda1 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.5e-08 Score=90.82 Aligned_cols=266 Identities=12% Similarity=0.031 Sum_probs=183.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChHhHHHH
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPS-----SISYASLIEALASVGRTLEADAIFQEMVCFG----FNP-KLRFYNIL 153 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~~-~~~~~~~l 153 (532)
...+...|++++|++++++..+.. +.+ ...+..+...+...|++++|.+.|++..+.. ..+ ....+..+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 445678899999999999988763 222 2357778888999999999999999886531 111 13455667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CcCHHhHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDM----GICR---NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF----QLNSFVYGK 222 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~----~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ 222 (532)
...+...|++..+...+...... +... ....+..+...+...|+++.+...+........ ......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 77888899999999888876542 1111 123556677788899999999999888765422 223445556
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcC--CCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC---CCHHHHHHH
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMG--LSL----DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR---PDIVTWNSL 293 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~l 293 (532)
....+...++...+...+.+..... ... ....+..+...+...|+.++|...++........ .....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6667778888888888877665421 111 1234556667778889999999888876654222 123456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 294 IRWHCKAGDVAKALELFTQMQE----QGFYPD-PKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
...+...|++++|...+++... .+..|+ ...+..+...+.+.|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888889999999988887653 233333 34566677788888888888888887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.5e-08 Score=90.84 Aligned_cols=162 Identities=9% Similarity=-0.023 Sum_probs=81.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC--CCC----CHHHHHH
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGH----GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG--LQP----SGSMFCI 397 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~ 397 (532)
+...+...|+++.+...+........ ......+......+...++...+...+....... ... ....+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 33444445555555555444433211 1112233333444444555555555444432210 011 1123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHH
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEPEGIE---PNLVMLNVLINAFGVAGKYKEALSVYHLMKD----IGISPD-LVTYSTLM 469 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~ 469 (532)
+...+...|++++|...++........ .....+..+..++...|++++|...+++... .+..|+ ...+..+.
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 455566667777777776665543211 1233445566667777777777777766542 233333 23555666
Q ss_pred HHHHhcCCcChHHHHHHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~ 489 (532)
.+|.+.|++++|.+.+++..
T Consensus 299 ~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.9e-08 Score=89.66 Aligned_cols=215 Identities=9% Similarity=0.068 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
..++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..++...+... -+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 456666677778899999999999999876 567778899888888876 58999999999988654 568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE---- 267 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 267 (532)
+.+.|++++|++.++++.+.... +...|..+...+...|++++|++.++.+++.+ +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999987433 78899999999999999999999999999886 3477788877766665554
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 009556 268 --LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY-PDPKIFITIISCLG 333 (532)
Q Consensus 268 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~ 333 (532)
+++|++.+.+..+... .+...|+.+...+. ....+++.+.++...+.... .+...+..+...+.
T Consensus 200 ~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 6788888888776533 26677776655544 44467777888777654322 24455555555553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=2.1e-08 Score=90.50 Aligned_cols=185 Identities=9% Similarity=0.021 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+++.+.........|...+..+.+.|+.++|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444555544433333444444444445555555555555555444322222334444444444555555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHH-HHhcCCcccHHHHHHHHHHcCCCCCH
Q 009556 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI-YGQYGRFRDPEECIAALKLEGLQPSG 392 (532)
Q Consensus 314 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (532)
.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+.
T Consensus 161 l~~~~~------------------------------------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~ 203 (308)
T d2onda1 161 REDART------------------------------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 203 (308)
T ss_dssp HTSTTC------------------------------------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred HHhCCC------------------------------------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhH
Confidence 443211 12222222111 122344455555555554432 2334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEG-IEP--NLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
..|...+..+...|+.+.|..+|++..... ..| ....|...+..-...|+.+.+.++++++.+
T Consensus 204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555556666666665554431 122 133555555555556666666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=2.4e-09 Score=98.22 Aligned_cols=218 Identities=11% Similarity=-0.058 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHH
Q 009556 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG--DVAKALELFTQMQEQGFYPDPKIFI-TIISCLGELGKWDVIKK 343 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~ 343 (532)
++++|+..++...+... .+...|..+..++...+ ++++|+..+.++.+.. +++...+. .....+...+..+.|..
T Consensus 88 ~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 34555555555544322 24444555544444443 3556666666555442 12233322 23334445556666666
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC
Q 009556 344 NFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI 423 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 423 (532)
.++.+.+.+ +.+...|+.+..++.+.|++++|...+....+.. |. ...+...+...+..+++...+.......
T Consensus 166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 666555544 3445555556666666666555544333322210 00 1112222333444444555555444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
+++...+..+...+...|+.++|...+.+..+.. +.+...|..+..++...|++++|.+.+++..+ +.|+
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~ 308 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 308 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGG
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcc
Confidence 2333344445555555666666666666555432 11334555556666666666666666666665 4554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=2.8e-09 Score=97.75 Aligned_cols=86 Identities=6% Similarity=-0.132 Sum_probs=36.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHH
Q 009556 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEE 378 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 378 (532)
..+..+++...+....... +++...+..+...+...++.+++...+.+..+.. +.+...+..+..+|...|+.++|.+
T Consensus 220 ~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp HHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred HhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344444444444444332 1122222333333444444455555444444332 2233444444455555555555555
Q ss_pred HHHHHHHc
Q 009556 379 CIAALKLE 386 (532)
Q Consensus 379 ~~~~~~~~ 386 (532)
.++.+.+.
T Consensus 298 ~~~~ai~l 305 (334)
T d1dcea1 298 YFSTLKAV 305 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=2.6e-08 Score=87.43 Aligned_cols=97 Identities=13% Similarity=-0.081 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..+...|.+.|++++|++.|++..+.. +.++.+|+.+..++.+.|++++|++.|+++.+.. +.+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 344555566666666666666666666553 3455666666666666666666666666666543 33445566666666
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 009556 158 LKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~ 176 (532)
...|++++|.+.|+...+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh
Confidence 6666666666666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=4.5e-08 Score=85.78 Aligned_cols=217 Identities=10% Similarity=-0.076 Sum_probs=138.0
Q ss_pred ChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 92 DIDEAMALLAQMQALGFHP---SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
+.+.|+.-+++........ ...+|..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3445666666665542111 23467778888999999999999999998865 5678889999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
.|++..+... .+..+|..+...+...|++++|.+.|+...+.... +......+...+.+.+..+....+.........
T Consensus 93 ~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999988654 35667888888999999999999999988876422 444444444455555555555555555554322
Q ss_pred CCCHHHHHHHHHHHhccCC----HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 249 SLDRQIYNSIIDTFGKYGE----LVEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
. ...++ ++..+..... .+.+...+...... .| ...+|..+...+...|++++|.+.|++....
T Consensus 171 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 171 E--QWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp C--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2 11222 2222222222 22222221111110 01 1234556677777778888888888777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=8.4e-07 Score=73.24 Aligned_cols=131 Identities=11% Similarity=-0.081 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.||. ...+...|++++|++.|+++. ++++.+|..+..++...|++++|++.|++.++.. +.+...|..+..+|.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4665 455678899999999998753 6788889999999999999999999999999876 567888999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 009556 159 KKGLLGLGSRLLMVMEDMGIC--------------R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 215 (532)
+.|++++|.+.|++....... . ...++..+...+.+.|++++|.+.+....+....+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999988653110 0 12345566667777888888888877777654443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=2.5e-06 Score=75.71 Aligned_cols=134 Identities=9% Similarity=0.021 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCh
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL----GFHP-SSISYASLIEALASVGRTLEADAIFQEMVCF----GF-NPKL 147 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~-~~~~ 147 (532)
..|......|...|++++|++.|.++.+. +-++ -..+|..+..+|.+.|++++|.+.++...+. |. ....
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 34677777777778888888887776543 1111 1245677777777777777777777765532 10 0112
Q ss_pred HhHHHHHHHHHh-cCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 148 RFYNILLRGFLK-KGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 148 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
.++..+...|.. .|++++|.+.+++..+. +.++ ...++..+...+.+.|++++|++.|++....
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 334444444433 46666666666655431 1111 1223455555555666666666666555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.5e-06 Score=63.79 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=72.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.-...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+....+.+ +.+...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 34556777888888888888887765 5667778888888888888888888888888765 567777788888888888
Q ss_pred ChhHHHHHHHHHHHcC
Q 009556 162 LLGLGSRLLMVMEDMG 177 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~ 177 (532)
++++|+..|++..+..
T Consensus 86 ~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE 101 (117)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888877643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.1e-06 Score=66.68 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
+....+.|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|+..++.. +.+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 4455667788888888888888888875 5677788888888888888888888888888765 4566788888888888
Q ss_pred cCChhHHHHHHHHHHHcC
Q 009556 160 KGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~ 177 (532)
.|++++|...+++.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK 108 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 888888888888888754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.9e-06 Score=67.55 Aligned_cols=124 Identities=13% Similarity=-0.051 Sum_probs=88.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 009556 119 IEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198 (532)
Q Consensus 119 i~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 198 (532)
...+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++..+... .+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence 445567888888888887643 56777888888888888999999888888887654 5667888888888888888
Q ss_pred HHHHHHHHHHHHCCCC--------------cC-HHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 199 DDTWLIINEMRSKGFQ--------------LN-SFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~--------------~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
++|.+.|++....... ++ ..++..+..++.+.|++++|.+.+....+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888887653110 01 1334445556666666776666666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=0.0004 Score=59.95 Aligned_cols=224 Identities=11% Similarity=-0.006 Sum_probs=128.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
|+..+..|-..+.+.+|+++|++.|++..+.| +...+..|...+.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566677777788899999999999988765 56666667777765 567888888888887755 233334
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHhHHHH
Q 009556 152 ILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (532)
Q Consensus 152 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 223 (532)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 44444433 3566777777777776543 1222222222222 334556666666555432 44555555
Q ss_pred HHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 224 IGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 224 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
...+.. ..+...+...++...+.| +......+...|.. ..+.++|...|.+..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555553 344555556666555543 44444444444433 345666666666665543 3444444544
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCC
Q 009556 296 WHCK----AGDVAKALELFTQMQEQG 317 (532)
Q Consensus 296 ~~~~----~g~~~~A~~~~~~m~~~~ 317 (532)
.|.. ..+.++|.++|++..+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4443 225556666666655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=9.4e-06 Score=71.86 Aligned_cols=209 Identities=12% Similarity=0.038 Sum_probs=114.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CCCHhHHHHH
Q 009556 294 IRWHCKAGDVAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAIL 363 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 363 (532)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++...+. +. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34455666666666666665431 1111 1245566666677777777777776665432 10 1113344455
Q ss_pred HHHHH-hcCCcccHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCC-----CCH-HHHH
Q 009556 364 VDIYG-QYGRFRDPEECIAALKLE----GLQP-SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE-----PNL-VMLN 431 (532)
Q Consensus 364 i~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~-~~~~ 431 (532)
...|. ..|++++|.+.+++..+. +..+ -..++..+...+...|++++|.+.+++....... ... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55553 357788887777766432 1111 1234667778888888888888888887654211 111 2234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCcChHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 432 VLINAFGVAGKYKEALSVYHLMKDIGIS-PD---LVTYSTLMKAFIR--AKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (532)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 505 (532)
..+..+...|+++.|.+.+++..+.... ++ ......++.++.. .+.+++|+..|+++. +-|..-...|.+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~----~lD~~~~~~L~~ 279 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM----RLDKWKITILNK 279 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS----CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCHHHHHHHHH
Confidence 4555667788888888888888764211 11 2234556666544 233556666665443 335443334444
Q ss_pred H
Q 009556 506 A 506 (532)
Q Consensus 506 a 506 (532)
+
T Consensus 280 ~ 280 (290)
T d1qqea_ 280 I 280 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=2.8e-06 Score=70.66 Aligned_cols=99 Identities=10% Similarity=-0.075 Sum_probs=75.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
|+...+......|.+.|++++|+..|++..... +.++..|..+..+|.+.|++++|+..|+...+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666677778888888888888888877765 5667778888888888888888888888887654 34566777788
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~ 175 (532)
.+|.+.|++++|...|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888777654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.37 E-value=0.00055 Score=59.01 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 009556 391 SGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDL 462 (532)
Q Consensus 391 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 462 (532)
+...+..+...|.. ..+...+...++...+.| +......+...|.. ..++++|..+|++..+.| ++
T Consensus 141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~ 214 (265)
T d1ouva_ 141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 214 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CH
Confidence 34445555555554 345566666666666544 45555555555554 567888999998888876 45
Q ss_pred HHHHHHHHHHHh----cCCcChHHHHHHHHHhCCCC
Q 009556 463 VTYSTLMKAFIR----AKKFHKVPEIYKQMESSGCT 494 (532)
Q Consensus 463 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 494 (532)
..+..|...|.+ ..+.++|.++|++..+.|..
T Consensus 215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 666667776665 34788899999988887744
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.3e-05 Score=59.79 Aligned_cols=92 Identities=14% Similarity=0.002 Sum_probs=66.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
-...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++...+.+. .+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence 4556667778888888887777665 45667777777777777777777777777776644 566677777777777777
Q ss_pred hHHHHHHHHHHHHC
Q 009556 198 LDDTWLIINEMRSK 211 (532)
Q Consensus 198 ~~~a~~~~~~m~~~ 211 (532)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.9e-06 Score=64.72 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPDL-VTYSTLMKAF 472 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 472 (532)
.++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|+++|+++...+..|+. .+|..|..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666777777777777777654 4566777777777766444 34577777777665433332 3566677777
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 505 (532)
.+.|++++|.+.|+++.+ +.|+......+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 777777777777777777 5676554444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.27 E-value=4.5e-06 Score=61.75 Aligned_cols=91 Identities=11% Similarity=-0.057 Sum_probs=76.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.+...+.+.|++++|+..|++..... +-++.+|..+..++.+.|++++|+..|++..+.. +.+...+..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 45667788999999999999988875 4568889999999999999999999999988765 556788888888999999
Q ss_pred ChhHHHHHHHHHH
Q 009556 162 LLGLGSRLLMVME 174 (532)
Q Consensus 162 ~~~~A~~~~~~m~ 174 (532)
++++|.+.+++..
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999988888753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2e-05 Score=62.44 Aligned_cols=92 Identities=7% Similarity=0.026 Sum_probs=64.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
....+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+... .+..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCC
Confidence 3456667777777777777777665 45666777777777777777777777777776543 445667777777777777
Q ss_pred hHHHHHHHHHHHHC
Q 009556 198 LDDTWLIINEMRSK 211 (532)
Q Consensus 198 ~~~a~~~~~~m~~~ 211 (532)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777665
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.21 E-value=1.2e-05 Score=66.74 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=61.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
|+...+......+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..|+...+..+ -+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence 455555556666666677777777776666554 44556666666666666666666666666655322 2455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 009556 190 DYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~ 210 (532)
.+|.+.|++++|+..|++...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=7.7e-06 Score=61.31 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC-hHhHHHHHHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT---LEADAIFQEMVCFGFNPK-LRFYNILLRG 156 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 156 (532)
+.+++.+...+++++|.+.|++....+ +.++.++..+..++.+.++. ++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467778888888888888888888876 56778888888888765544 468888888876543233 2367778888
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~ 177 (532)
|.+.|++++|.+.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 888888888888888887743
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.09 E-value=2e-05 Score=58.13 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
.+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..|++..+..+ .+...|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCC
Confidence 34556667777777887777777654 34567777777777777777777777777776543 45667777777777777
Q ss_pred ChHHHHHHHHHH
Q 009556 197 RLDDTWLIINEM 208 (532)
Q Consensus 197 ~~~~a~~~~~~m 208 (532)
+.++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0029 Score=55.84 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (532)
+.+++.-....++...+.+ +....+++...|...++++.
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 3334444444444444333 33455666666666666544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.00015 Score=57.81 Aligned_cols=97 Identities=9% Similarity=-0.080 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--------------SISYASLIEALASVGRTLEADAIFQEMVCFGFN 144 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~ 144 (532)
.+......+.+.|++++|+..|.+.....-... ..+|+.+..+|.+.|++++|+..++..++.. +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 345566788899999999999998876421100 1233444445555555555555555555443 3
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.++..+..+..+|...|++++|...|+...+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=8.1e-05 Score=56.24 Aligned_cols=103 Identities=10% Similarity=0.169 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHH
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS-PD-----LVTYSTLM 469 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-----~~~~~~l~ 469 (532)
..+...+...|++++|++.|.+..+.. +.+...|..+..+|.+.|++++|.+.++++++.... ++ ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344556666777777777777666653 345666667777777777777777777776542100 00 12455566
Q ss_pred HHHHhcCCcChHHHHHHHHHhCCCCCCHHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 501 (532)
..+...+++++|.+.|++... ..|+.....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 116 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA--EHRTPDVLK 116 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCCCHHHHH
Confidence 666677777777777777665 334444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00011 Score=55.41 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------hHhHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-------LRFYNI 152 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-------~~~~~~ 152 (532)
+..+-..+.+.|++++|+..|++..+.+ +.+..++..+..+|.+.|++++|++.++++++.. +.+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4556778888899999999999988875 5677888888999999999999999998877532 111 134556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
+...+...+++++|++.|+.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666677777888888877776553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.86 E-value=0.00041 Score=54.11 Aligned_cols=109 Identities=13% Similarity=-0.007 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFH----PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
..+..-...+.+.|++.+|+..|.++...-.. ++.... .... .....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhH
Confidence 34566677888999999999999988764210 111100 0000 0011234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..+|.+.|++++|++.++...+..+ .+..+|..+..++...|++++|...|++..+.
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555544332 34445555555555555555555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.008 Score=52.92 Aligned_cols=283 Identities=9% Similarity=0.086 Sum_probs=122.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhC
Confidence 3444444555555555555543332 3444455555555555555444321 344555555555544
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
.....+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.+
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 443322 1112222234444445566666666666666666654432 1234555566666665543 33333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC
Q 009556 311 TQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP 390 (532)
Q Consensus 311 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (532)
... +...| ...++..|.+.+-++++.-++..+... -+++.-.+.+..+..++....+-..+. .
T Consensus 156 ~~~---s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~--------~~A~~~~i~~~~~~~~~~~f~e~~~k~---~ 218 (336)
T d1b89a_ 156 ELF---WSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEY--------DNAIITMMNHPTDAWKEGQFKDIITKV---A 218 (336)
T ss_dssp HHH---STTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCH--------HHHHHHHHHSTTTTCCHHHHHHHHHHC---S
T ss_pred Hhc---cccCC---HHHHHHHHHHcCChHHHHHHHHhcCCH--------HHHHHHHHHcchhhhhHHHHHHHHHcc---C
Confidence 222 11111 123344455555554444444333211 011111122222222222222222221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
|+..|-.++..|... +.+-...++..+... -|. ..++..+-+.+++.-...+++...+.| +....++|..
T Consensus 219 N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~ 288 (336)
T d1b89a_ 219 NVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNN 288 (336)
T ss_dssp STHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHH
Confidence 223344444444432 122233333333321 121 345556667777777777777766654 4467889999
Q ss_pred HHHhcCCcChHH
Q 009556 471 AFIRAKKFHKVP 482 (532)
Q Consensus 471 ~~~~~g~~~~a~ 482 (532)
.|...++++.-.
T Consensus 289 lyie~~d~~~l~ 300 (336)
T d1b89a_ 289 LFITEEDYQALR 300 (336)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHhCcchhHHHH
Confidence 999998865433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.77 E-value=0.00047 Score=55.24 Aligned_cols=124 Identities=9% Similarity=-0.035 Sum_probs=79.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.........|++++|.+.|.+....- +.... ......+.+...-..+.. .....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 33456788999999999999988751 21110 000010111111111111 12345667778888888
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCcCHHhH
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR-----SKGFQLNSFVY 220 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~ 220 (532)
++++|+..++.+.+... -+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+-
T Consensus 82 ~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 82 RASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 88888888888877654 567788888888888888888888888763 35788876553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00037 Score=55.40 Aligned_cols=97 Identities=7% Similarity=-0.050 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC-----------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL---GFHPS-----------SISYASLIEALASVGRTLEADAIFQEMVCFGF 143 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~-----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 143 (532)
..+......+.+.|++.+|+..|++.... ....+ ..+|+.+..++.+.|++++|+..++...+..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 34566778889999999999999886642 00111 1123334444445555555555555554433
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
+.+...|..+..++...|++++|...|+.+.+
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444455555555555555555555444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00028 Score=56.17 Aligned_cols=111 Identities=7% Similarity=-0.082 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
+......+.+.|++++|++.|+++.+.. ..............+ . +.....+..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~~~----~----~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGAKL----Q----PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHGGG----H----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHHHh----C----hhhHHHHHHHHHHHHh
Confidence 4455667788899999999998876420 000000000000000 0 1123344455555555
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
.|++++|+..+++..+... .+..+|..+..++...|++++|++.|++..+.
T Consensus 90 ~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666655555432 34455555556666666666666666655554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.0008 Score=53.44 Aligned_cols=126 Identities=6% Similarity=-0.097 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+......+.+.|++++|+..|.+.++.-..... ..+.-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 4455667788899999999999888753210000 000000111111 1224556666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTF 262 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 262 (532)
+.|++++|+..++..+..... +..++..+..++...|++++|...|+.+.+... .+..+...+-...
T Consensus 74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 140 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 777777777777777665322 566677777777777777777777777766542 2444444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.00056 Score=53.28 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 501 (532)
.+|+.+..+|.+.|++++|++.+++..+.. +.+...|..+..++...|++++|...|++..+ +.|+.....
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~ 138 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIR 138 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 466778888999999999999999988764 34778899999999999999999999999987 567544433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00067 Score=54.28 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh-----CCCCCCHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQI 502 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 502 (532)
..+..+..++...|++++|...++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 456778889999999999999999998763 34778899999999999999999999999853 599998876544
Q ss_pred HH
Q 009556 503 LQ 504 (532)
Q Consensus 503 l~ 504 (532)
.-
T Consensus 147 ~~ 148 (179)
T d2ff4a2 147 NE 148 (179)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.61 E-value=4.9e-05 Score=65.43 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=78.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHH
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (532)
..+.|++++|++.+++..+.. +.|...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 456799999999999988875 6678889999999999999999999999988764 22344444444444333222222
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 167 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..-.......+.+++...+......+...|+.++|.++++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000111122334444556677778888888888877654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=0.00021 Score=55.12 Aligned_cols=73 Identities=8% Similarity=-0.086 Sum_probs=53.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASV----------GRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
|-+.+.+++|++.|+...+.. |.++.++..+..++... +.+++|+..|++..+.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345677999999999998886 66788888888887754 34567777777777665 4566677777777
Q ss_pred HHhcC
Q 009556 157 FLKKG 161 (532)
Q Consensus 157 ~~~~g 161 (532)
|...|
T Consensus 85 y~~~g 89 (145)
T d1zu2a1 85 YTSFA 89 (145)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 76544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=3.5e-05 Score=73.79 Aligned_cols=225 Identities=10% Similarity=-0.003 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHH
Q 009556 95 EAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILLRGFLKKGLLGLGSRLLMV 172 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 172 (532)
+|.+.|++..+. +|+ ..++..+..++...+++++| |+++.... |+. ..++.... +. ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~-Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQD-LW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHH-HH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHH-HH-HHHHHHHHHHHHH
Confidence 566777776654 333 33455556666666666654 55554321 211 11111100 00 1113344555555
Q ss_pred HHHcCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 009556 173 MEDMGICRNQETYEILLD--YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (532)
Q Consensus 173 m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (532)
..+....++..-....+. .....+.++.++..+....+.. .++...+..+...+.+.|+.++|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 544322222221111111 1122333444444443332221 1234455666666777777777776666554431
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 330 (532)
...++..+.+.+...|++++|...|++..+... -+...|+.+...+...|+..+|+..|.+..... .|-...+..+..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 124566677777778888888888887776532 245677888888888888888888888777653 455666666666
Q ss_pred HHHc
Q 009556 331 CLGE 334 (532)
Q Consensus 331 ~~~~ 334 (532)
.+.+
T Consensus 229 ~~~~ 232 (497)
T d1ya0a1 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=6e-05 Score=72.09 Aligned_cols=229 Identities=5% Similarity=-0.126 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 130 EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ-ETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 130 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
+|.+.|++..+.. +.....+..+..++...|++++| |+++.... |+. ..++. ....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHHh
Confidence 5778888877532 12234555566667777777665 56655421 211 11111 1111111245566777776
Q ss_pred HHCCCCcCHHhHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 009556 209 RSKGFQLNSFVYGKVIGL--YRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD 286 (532)
Q Consensus 209 ~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 286 (532)
.+....++..-....+.. ....+.++.++..+....+.. +++...+..+...+.+.|+.++|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 655434443322222222 222344555555544443332 2355667778888889999999988777655421 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 366 (532)
..++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... +|...++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3466778888999999999999999998763 3356889999999999999999999999998776 5667788888877
Q ss_pred HHhcCC
Q 009556 367 YGQYGR 372 (532)
Q Consensus 367 ~~~~g~ 372 (532)
+.+...
T Consensus 230 ~~~~~~ 235 (497)
T d1ya0a1 230 LSKALE 235 (497)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.0012 Score=52.41 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=92.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
.....+...|++++|++.|.++.+.. .............. +. +.....|..+..++.+.|
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGAK----LQ----PVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHHhhc
Confidence 34556778899999999998876420 00000011111100 01 124557888899999999
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
++++|+..+++..+.... +..+|..+..++...|++++|.+.|+.+.+.. +.+..+...+.....+.....+
T Consensus 92 ~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987533 78899999999999999999999999999875 3366677776666554444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.37 E-value=0.00017 Score=62.03 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=72.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 009556 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 201 (532)
..+.|++++|++.+++.++.. +.|...+..+...++..|++++|.+.|+...+... -+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHHH
Confidence 446788899999998888876 56778888888889999999999888888877532 2333444444444333322222
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000111112223333344556667777777777666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.36 E-value=0.0024 Score=50.43 Aligned_cols=126 Identities=10% Similarity=-0.041 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCF---GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
.+......+.+.|++++|...|...... ....+.. .......+ ....|+.+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhHHH
Confidence 4556677888999999999999887642 1011100 00001111 1224555666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
+|.+.|++++|+..++....... .+..+|..+..++...|++++|...|+.+.+.. +.+..+...+-....+.
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 66777777777777777666532 256666666677777777777777777776654 23444444444443333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.21 E-value=0.0011 Score=50.92 Aligned_cols=72 Identities=3% Similarity=-0.216 Sum_probs=48.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK----------GLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
-+.+.+++|++.|+...+.. |.+..++..+..++... +.+++|+..|++..+..+ .+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHH
Confidence 45566889999999988776 56777888888777654 334567777777766543 4555666666666
Q ss_pred HhcC
Q 009556 193 VNAG 196 (532)
Q Consensus 193 ~~~~ 196 (532)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.05 E-value=0.0055 Score=47.53 Aligned_cols=96 Identities=19% Similarity=0.079 Sum_probs=54.4
Q ss_pred hHHHH--HHHHHHcCChHHHHHHHHHHHHcCC-CCC----------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 009556 79 SYNKS--IQYCCKLGDIDEAMALLAQMQALGF-HPS----------SISYASLIEALASVGRTLEADAIFQEMVCF---- 141 (532)
Q Consensus 79 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~-~~~----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 141 (532)
+|+.+ ...+.+.|++++|++.|++..+..- .|+ ...|+.+..++...|++++|.+.+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 4456677888888888888765321 111 345667777777777777777777766532
Q ss_pred -CCCCC-----hHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 009556 142 -GFNPK-----LRFYNILLRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 142 -g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (532)
...++ ...++.+..+|...|++++|...|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1123444455555555555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.62 E-value=0.02 Score=44.17 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 254 IYNSIIDTFGKYGELVEALEVFEKMQQE-----SIRPD-----IVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
.|+.+..+|.+.|++++|...+++..+. ...++ ...++.+..+|...|++++|++.|++..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544321 01111 1123445555556666666666555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.011 Score=41.09 Aligned_cols=74 Identities=9% Similarity=-0.107 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALG-----FHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
..+-.+...+.+.|++++|+..|++..+.. ..++ ..+++.+..++.+.|++++|++.++++++.. |.+..+++
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 344466777788888888888888766541 1111 4567777788888888888888888877754 23344444
Q ss_pred H
Q 009556 152 I 152 (532)
Q Consensus 152 ~ 152 (532)
.
T Consensus 85 N 85 (95)
T d1tjca_ 85 N 85 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.028 Score=38.93 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=45.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFG-----FNP-KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+...+-.+...+.+.|++++|++.|++..+.. ..+ ...+++.|..++.+.|++++|+..++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34445567778888888888888888776431 111 13567777777777777777777777777653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.81 E-value=0.21 Score=36.79 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDV 303 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~ 303 (532)
+.++|.+++++..+.| +...+..|...|.. ..+.++|.++|++..+.| +......|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4445555555544443 33333333333322 234555555555554443 23333333333333 2345
Q ss_pred HHHHHHHHHHHHCC
Q 009556 304 AKALELFTQMQEQG 317 (532)
Q Consensus 304 ~~A~~~~~~m~~~~ 317 (532)
++|.++|++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.37 E-value=0.3 Score=35.81 Aligned_cols=48 Identities=15% Similarity=0.001 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQES 282 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 282 (532)
+.++|.++|+...+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 4555666666655554 33334444444433 335666666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.32 E-value=0.29 Score=34.80 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
..++.+.+.|+-++-.++++.+.+. -+|++.....+..+|.+.|...++.+++.+..+.|
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3344444444444444444443331 23333334444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.27 E-value=0.3 Score=34.71 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccH
Q 009556 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (532)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 376 (532)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+.- |. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F---Dl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---DL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---CG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhc---Cc----------hhhhcHHHH
Confidence 34567777777777777653 245556666655555556666666665554321 11 122222222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
...+-.+ ..+...+...++....+|.-+.-.++...+.+.+ +|+....-.+..+|.+-|...++-+++.++-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222221 1122335555666677777777777777765544 667777777777777777777777777777776
Q ss_pred CCC
Q 009556 457 GIS 459 (532)
Q Consensus 457 ~~~ 459 (532)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.51 Score=33.71 Aligned_cols=77 Identities=4% Similarity=-0.079 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 424 EPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
.|...|--.+..++.+.. +.++++.+|++..+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+.+ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 355555556666666554 3456777777776542 223 24556677778888888888888888877 6676544
Q ss_pred HHHH
Q 009556 500 RQIL 503 (532)
Q Consensus 500 ~~~l 503 (532)
...|
T Consensus 109 A~~L 112 (124)
T d2pqrb1 109 VGAL 112 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.70 E-value=0.74 Score=30.90 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 442 KYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.+ +.++...|..+++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 33445555555555566667766677777777777777777776666533 223344555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.71 E-value=8 Score=34.69 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=60.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHhcC
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS--VGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKG 161 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g 161 (532)
....+.|+..++.++...+... | ..-|-..-..-.. .....+...++ .+..-.|- ...-...+..+.+.+
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl---~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFV---RANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHHHhcc
Confidence 3456778888888877776431 2 2233322222222 23344333333 33211121 122234456667777
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
++......+. ..+.+...-.....+....|+.++|...+..+-..|
T Consensus 87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 7766444332 122345555566777778888888887777665544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.35 E-value=1.9 Score=28.81 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 364 (532)
+.-++.+-++.+......|++....+.+.+|.+.+++..|.++++.+.... ..+...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344555556666666677777777777777777777777777777666432 12234454443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.68 E-value=5.6 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 291 NSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
-.+.-+|.+.|++++|.+.++.+.+
T Consensus 77 Y~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 77 YYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444445555555555555555554
|