Citrus Sinensis ID: 009571

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
MELSSSFASLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQPKSV
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHcccccEEccccHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHccccccccHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccc
ccccccccccccccccEccccccccHHHHHHcccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHcccccccccccHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHccHHHHHHHccccEEEEEEcccEccHHHHHcccccHHHHHccccHEcccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHccHHEHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHcHHHHHHEHEccHccccccc
MELSSSFaslvsdnisfssaispfplqsslktlkltkptsqnLRILAVAvepqqdlphnspQKLLKELAERkkvtspkkkvppkkfilrpplddkklVDRFlkspqlslksfpllssclppsrlnnadQTWIDEYLLEAKQAlgyslepsdqlgddnpakhfDTLLYLAFQHpfcernkarhvraghsrlcFLGQFVLELAFCEFFlqryprespapmRERVFGligrrnlpkWIKAASLQNLIFPFDEMDRLirkereppvkSVFWALFGAIYLCFGFPEVYRVLFEVfgmdpedkecqpkLRRQLEDVDYVSVefegnkltwqdvaaykppedalfaqprlfracvppgmhrfrgnlwdfdsrpqvmqtlgyplvvqdripeITEARNIELGLglqlcflhpskykfehprfCFERLEYVGQKIQDLVMAERLLMKhldapghwlqeKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHnrrlrnpstTAVQQALHGLAytvygkpdvrrLMFEVfdfeqiqpksv
MELSSSFASLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAvepqqdlphnsPQKLLKELAerkkvtspkkkvppkkfilrpplddkklVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQryprespapMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDapghwlqekhrRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVfdfeqiqpksv
MELSSSFASLVSDNISFSSAISPFplqsslktlkltkptsqNLRILAVAVEPQQDLPHNSPQKLLKELAERkkvtspkkkvppkkFILRPPLDDKKLVDRflkspqlslksfpllssclppsRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQPKSV
*******************************************RILAV************************************************LVDRFLK**QLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSL***********AKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE**APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP****C**KLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFE*******
************DNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVA***************L*ELA****************FILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCE*********GHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD****KEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLV*QDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIY******************TTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQP***
*********LVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAER**********PPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQPKSV
***************SFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEM**LIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQ****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MELSSSFASLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQPKSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query532 2.2.26 [Sep-21-2011]
Q5L0Q3246 Ribonuclease 3 OS=Geobaci yes no 0.233 0.504 0.282 5e-05
A9VT87245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.275 7e-05
Q819V8245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 9e-05
B7HDX2245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 9e-05
B7IUK8245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 9e-05
Q7UGZ7266 Ribonuclease 3 OS=Rhodopi no no 0.208 0.417 0.300 0.0001
B9IVD8245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 0.0001
B7HLI2245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 0.0001
Q732M1245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 0.0001
Q6HEW6245 Ribonuclease 3 OS=Bacillu yes no 0.238 0.518 0.267 0.0001
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc PE=3 SV=1 Back     alignment and function desciption
 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%)

Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
           + LL  AF H        R +   + RL FLG  VLEL   ++  Q++P  S   + +  
Sbjct: 32  EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91

Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
             ++   +L K+  A S   L+      +    + R   +  VF A  GA+YL  G   V
Sbjct: 92  AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151

Query: 283 YRVL 286
            R L
Sbjct: 152 IRFL 155
Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon.
Geobacillus kaustophilus (strain HTA426) (taxid: 235909)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 3
>sp|A9VT87|RNC_BACWK Ribonuclease 3 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q819V8|RNC_BACCR Ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|B7HDX2|RNC_BACC4 Ribonuclease 3 OS=Bacillus cereus (strain B4264) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|B7IUK8|RNC_BACC2 Ribonuclease 3 OS=Bacillus cereus (strain G9842) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q7UGZ7|RNC_RHOBA Ribonuclease 3 OS=Rhodopirellula baltica (strain SH1) GN=rnc PE=3 SV=2 Back     alignment and function description
>sp|B9IVD8|RNC_BACCQ Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|B7HLI2|RNC_BACC7 Ribonuclease 3 OS=Bacillus cereus (strain AH187) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q732M1|RNC_BACC1 Ribonuclease 3 OS=Bacillus cereus (strain ATCC 10987) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q6HEW6|RNC_BACHK Ribonuclease 3 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rnc PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
255584888532 RNA binding protein, putative [Ricinus c 0.994 0.994 0.829 0.0
449510992534 PREDICTED: LOW QUALITY PROTEIN: uncharac 1.0 0.996 0.803 0.0
224074235535 predicted protein [Populus trichocarpa] 0.992 0.986 0.808 0.0
225438954542 PREDICTED: uncharacterized protein LOC10 0.998 0.979 0.824 0.0
449448248533 PREDICTED: uncharacterized protein LOC10 1.0 0.998 0.797 0.0
15235580537 Ribonuclease III family protein [Arabido 0.936 0.927 0.841 0.0
297798116537 ribonuclease III family protein [Arabido 0.936 0.927 0.839 0.0
356496965525 PREDICTED: uncharacterized protein LOC10 0.979 0.992 0.775 0.0
356541663540 PREDICTED: uncharacterized protein LOC10 0.926 0.912 0.815 0.0
357453661544 Ribonuclease [Medicago truncatula] gi|35 0.992 0.970 0.760 0.0
>gi|255584888|ref|XP_002533159.1| RNA binding protein, putative [Ricinus communis] gi|223527031|gb|EEF29218.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/535 (82%), Positives = 488/535 (91%), Gaps = 6/535 (1%)

Query: 1   MELSSSFASLVS-DNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQ--DLP 57
           MELSSSF        ISF+S+ SPF LQ  LK      P   NLR+LAVA++P Q  +LP
Sbjct: 1   MELSSSFTHFTKISEISFTSSFSPFALQIHLKKPIKFPP---NLRVLAVAIDPPQPQELP 57

Query: 58  HNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSS 117
            NSPQ+LLKELAERKK+TSPKKKVPPK+FIL+PPLDDKKL  RFL SPQLSLK FPLLSS
Sbjct: 58  QNSPQRLLKELAERKKITSPKKKVPPKRFILKPPLDDKKLAQRFLNSPQLSLKQFPLLSS 117

Query: 118 CLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCER 177
           CLP SRLN+ D+TWIDEYLLEAKQALGYSLEPSD  GDDNPAK FDTLLYLAFQHP CER
Sbjct: 118 CLPSSRLNSVDKTWIDEYLLEAKQALGYSLEPSDNFGDDNPAKQFDTLLYLAFQHPSCER 177

Query: 178 NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKA 237
             ARHV+ GHSRLCFLGQ+VLELAFCEFFLQRYPRESPAPMRERVF LIG+RNLPKWIKA
Sbjct: 178 TNARHVKYGHSRLCFLGQYVLELAFCEFFLQRYPRESPAPMRERVFALIGKRNLPKWIKA 237

Query: 238 ASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDK 297
           ASLQNLIFP+D++D+L+RK+REPPVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDPE +
Sbjct: 238 ASLQNLIFPYDDIDKLLRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPEAE 297

Query: 298 ECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRG 357
           +CQPKLRRQLEDVDYVSVEFEGNKL+WQDVAAYKPPEDALFA PRLFRACVPPGMHRFRG
Sbjct: 298 DCQPKLRRQLEDVDYVSVEFEGNKLSWQDVAAYKPPEDALFAHPRLFRACVPPGMHRFRG 357

Query: 358 NLWDFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFE 417
           N+WD+DSRP+VM+TLGYPL + DRIP+ITEARNIELGLGLQLCFLHPSKYKFEHPRFC+E
Sbjct: 358 NIWDYDSRPKVMKTLGYPLAMSDRIPDITEARNIELGLGLQLCFLHPSKYKFEHPRFCYE 417

Query: 418 RLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSE 477
           RLE+VGQKIQDLV+AERLLMKHLDAPG WLQE+HRR+LMNKFCGRYLR+K+LH +++YSE
Sbjct: 418 RLEFVGQKIQDLVLAERLLMKHLDAPGKWLQERHRRLLMNKFCGRYLRDKHLHHFIVYSE 477

Query: 478 QVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQPKSV 532
           QV DAYE+NRRLRNP+TTAVQQALHGL+YTVYGKPDVRRLMFEVFDFEQIQPK+V
Sbjct: 478 QVIDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 532

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449510992|ref|XP_004163832.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101231265 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224074235|ref|XP_002304313.1| predicted protein [Populus trichocarpa] gi|222841745|gb|EEE79292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225438954|ref|XP_002284222.1| PREDICTED: uncharacterized protein LOC100254381 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448248|ref|XP_004141878.1| PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15235580|ref|NP_195467.1| Ribonuclease III family protein [Arabidopsis thaliana] gi|4468817|emb|CAB38218.1| putative protein [Arabidopsis thaliana] gi|7270733|emb|CAB80416.1| putative protein [Arabidopsis thaliana] gi|95147308|gb|ABF57289.1| At4g37510 [Arabidopsis thaliana] gi|332661403|gb|AEE86803.1| Ribonuclease III family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798116|ref|XP_002866942.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] gi|297312778|gb|EFH43201.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356496965|ref|XP_003517335.1| PREDICTED: uncharacterized protein LOC100814070 [Glycine max] Back     alignment and taxonomy information
>gi|356541663|ref|XP_003539293.1| PREDICTED: uncharacterized protein LOC100809155 [Glycine max] Back     alignment and taxonomy information
>gi|357453661|ref|XP_003597111.1| Ribonuclease [Medicago truncatula] gi|357482679|ref|XP_003611626.1| Ribonuclease [Medicago truncatula] gi|355486159|gb|AES67362.1| Ribonuclease [Medicago truncatula] gi|355512961|gb|AES94584.1| Ribonuclease [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
TAIR|locus:2126397537 AT4G37510 [Arabidopsis thalian 0.988 0.979 0.746 1.9e-216
TIGR_CMR|BA_3987245 BA_3987 "ribonuclease III" [Ba 0.238 0.518 0.267 0.00069
TAIR|locus:2126397 AT4G37510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2091 (741.1 bits), Expect = 1.9e-216, P = 1.9e-216
 Identities = 397/532 (74%), Positives = 432/532 (81%)

Query:     4 SSSFASLVSDN---ISFSSAISPFXXXXXXXXXXXXXXXXXNLRILAVAVEPQQDLPHNS 60
             SSS   + S +   ISFSS+IS F                 NLRI A      Q LP +S
Sbjct:     9 SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSRFQ---NLRICASVTAETQGLPRDS 65

Query:    61 PQKLLKELAERXXXXXXXXXXXXXXFILRPPLDDKKLVDRXXXXXXXXXXXXXXXXXXXX 120
             PQ+LLKELA+R              FILRPPLDDKKL +R                    
Sbjct:    66 PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 125

Query:   121 XXRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKA 180
               +LNNAD+TWIDEYLLE KQALGYSLEPS+ LGDDNPAKHFDTLLYLAFQHP C+R +A
Sbjct:   126 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 185

Query:   181 RHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASL 240
             RHV+ GHSRL FLGQ+VLELA  EFFLQRYPRESP PMRERVF LIG+R LPKWIKAASL
Sbjct:   186 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 245

Query:   241 QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQ 300
             QNLIFP+D+MD+LIRKEREPPVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDP+  ECQ
Sbjct:   246 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 305

Query:   301 PKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLW 360
             P+ RRQLEDVDYVSVEFEG KL WQD+A YKPPEDALFA PRLFRACVPPGMHRFRGN+W
Sbjct:   306 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 365

Query:   361 DFDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLE 420
             DFDS+P+VMQTLGYPL + DRI EITEARNIELGLGLQLCFLHPSK+KFEHPRFCFERLE
Sbjct:   366 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 425

Query:   421 YVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQ 480
             YVGQKIQD+ MAERLLMKHLDAPG WLQEKHRR+LMNKFCGRYLREK LH ++IYSE+V 
Sbjct:   426 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 485

Query:   481 DAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFEQIQPKSV 532
             D YEHNRRLRNP+TTAVQQA+HGLAYT+YGKPDVRRLMFEVFDFEQIQPK+V
Sbjct:   486 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0004525 "ribonuclease III activity" evidence=IEA;ISS
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0051607 "defense response to virus" evidence=RCA
TIGR_CMR|BA_3987 BA_3987 "ribonuclease III" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_III0636
hypothetical protein (535 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
cd00593133 cd00593, RIBOc, RIBOc 1e-22
smart00535129 smart00535, RIBOc, Ribonuclease III family 1e-21
cd00593133 cd00593, RIBOc, RIBOc 3e-19
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 5e-06
smart00535129 smart00535, RIBOc, Ribonuclease III family 3e-05
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 4e-05
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 3e-04
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information 
 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
           +LL  A  HP        H R  + RL FLG  VLEL   E+  +++P  S   +     
Sbjct: 1   SLLLEALTHPSYANE---HGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRS 57

Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
            L+    L +  +   L   +      ++   + R   +  VF AL GAIYL  GF    
Sbjct: 58  ALVSNETLARLARELGLGKYLRLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAAR 117

Query: 284 RVLFEVFGMDPED 296
           + L  + G   E+
Sbjct: 118 KFLLRLLGPLIEE 130

Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
KOG1817 533 consensus Ribonuclease [RNA processing and modific 100.0
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 100.0
PRK14718 467 ribonuclease III; Provisional 100.0
PRK12371235 ribonuclease III; Reviewed 100.0
PRK12372 413 ribonuclease III; Reviewed 100.0
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 100.0
PRK12371235 ribonuclease III; Reviewed 100.0
PRK14718467 ribonuclease III; Provisional 99.98
PRK12372413 ribonuclease III; Reviewed 99.98
PRK00102229 rnc ribonuclease III; Reviewed 99.98
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.98
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 99.97
PRK00102229 rnc ribonuclease III; Reviewed 99.97
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.96
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 99.96
smart00535129 RIBOc Ribonuclease III family. 99.96
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.95
KOG07011606 consensus dsRNA-specific nuclease Dicer and relate 99.95
smart00535129 RIBOc Ribonuclease III family. 99.95
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.94
KOG1817533 consensus Ribonuclease [RNA processing and modific 99.91
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.89
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.87
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 99.36
KOG3769333 consensus Ribonuclease III domain proteins [Transl 98.76
KOG3769 333 consensus Ribonuclease III domain proteins [Transl 98.27
COG1939132 Ribonuclease III family protein [Replication, reco 97.97
COG1939132 Ribonuclease III family protein [Replication, reco 97.31
>KOG1817 consensus Ribonuclease [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-45  Score=379.95  Aligned_cols=323  Identities=22%  Similarity=0.274  Sum_probs=250.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccc------------------c-------------
Q 009571          132 IDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK------------------A-------------  180 (532)
Q Consensus       132 ~~~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~------------------~-------------  180 (532)
                      .+..+.-+++.+||+|++             ..+|..|+||||+....                  +             
T Consensus        39 ~~~~l~~~e~~i~y~f~~-------------r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr  105 (533)
T KOG1817|consen   39 YHQSLDHLEELIGYTFQD-------------RCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKR  105 (533)
T ss_pred             HHHhHHHHHHHhCeeecc-------------hHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHH
Confidence            445678899999999998             89999999999986310                  0             


Q ss_pred             --------------------ccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCC
Q 009571          181 --------------------RHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASL  240 (532)
Q Consensus       181 --------------------~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL  240 (532)
                                          ......|||||||||++.+++++.++|..+|...+|.|...|+++|.|+.++.+++++.+
T Consensus       106 ~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrk  185 (533)
T KOG1817|consen  106 KLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRK  185 (533)
T ss_pred             HhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHH
Confidence                                013568999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh-CCCCCccccchhhhhhccccccccccccC
Q 009571          241 QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF-GMDPEDKECQPKLRRQLEDVDYVSVEFEG  319 (532)
Q Consensus       241 ~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~-g~d~~~~~~~pkl~~~ledid~vs~ef~g  319 (532)
                      +.++....+.+.....+....++++|||++||+|+|.|...+.....+.+ +.++       .+.               
T Consensus       186 d~fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~ep-------vle---------------  243 (533)
T KOG1817|consen  186 DEFLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEP-------VLE---------------  243 (533)
T ss_pred             HHHHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCc-------hhh---------------
Confidence            99998766544433334467899999999999999999987766554432 2121       111               


Q ss_pred             cccchhhcccCCCchhhhhhcchhhhccCCCCCccccCCccc-CCChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhh
Q 009571          320 NKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWD-FDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQ  398 (532)
Q Consensus       320 ~~l~w~~i~~~~~p~dal~~~p~l~~~c~p~~~~~f~~~~~~-~~~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~  398 (532)
                        -.|.........++    .        |. .+++....|- .-.+.+.++++|..|.            ++.   ++.
T Consensus       244 --e~w~~~~ehelq~~----e--------p~-gDr~~~~~~Ppllp~~~~e~~~g~vF~------------Hir---lla  293 (533)
T KOG1817|consen  244 --EEWEHEPEHELQEQ----E--------PA-GDRVLITKYPPLLPLTQFEEIIGIVFI------------HIR---LLA  293 (533)
T ss_pred             --ccccCCCcCccccc----C--------CC-ccccccccCCCCCchhhHHHHHHHHHH------------HHH---HHH
Confidence              01221111100000    0        00 0111111111 1123567889998875            665   999


Q ss_pred             hhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchh
Q 009571          399 LCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQ  478 (532)
Q Consensus       399 ~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~  478 (532)
                      +|||-+|...++-...+|||||||||+||+++++++||.+||+++||.||.+|++||+|++-+++|..+|+++|++....
T Consensus       294 ~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n~~  373 (533)
T KOG1817|consen  294 RAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITNFD  373 (533)
T ss_pred             HHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhCcc
Confidence            99999996444334568999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             hhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571          479 VQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD  523 (532)
Q Consensus       479 ~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~  523 (532)
                      ..+.    -+.+....||+|||+|||+|+|.|.+.+++|+..+|-
T Consensus       374 ~k~~----~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~  414 (533)
T KOG1817|consen  374 LKDF----QNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFF  414 (533)
T ss_pred             hhhh----hhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhh
Confidence            4332    3456678999999999999999999999999999883

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>KOG1817 consensus Ribonuclease [RNA processing and modification] Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1o0w_A252 Crystal Structure Of Ribonuclease Iii (Tm1102) From 5e-05
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
           + LL+ A  H     E+N+A R     + +L FLG  VLEL  CE   ++YP        
Sbjct: 35  EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 94
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
           R   A   E V  ++ R+ NL K+         +F     ++   ++R+  +   F AL 
Sbjct: 95  RVKSAAASEEVLAMVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 145
Query: 271 GAIYLCFGFPEVYRVLFE 288
            AIYL  G+ ++ + LFE
Sbjct: 146 AAIYLDQGYEKI-KELFE 162

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 1e-06
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 3e-04
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.5 bits (156), Expect = 5e-11
 Identities = 87/613 (14%), Positives = 163/613 (26%), Gaps = 194/613 (31%)

Query: 2   ELSSSFASLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEP--QQDLP-- 57
              S  +    D+I     +S   +  +L+        S+   ++   VE   + +    
Sbjct: 41  MPKSILSKEEIDHI----IMSKDAVSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFL 94

Query: 58  -------HNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLK 110
                     P  + +   E++       +V  K  + R     K      L+   L L+
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK------LRQALLELR 148

Query: 111 SFPLLS---------SCLPPSRLNNADQT--------WI-------DEYLLEAKQALGYS 146
               +          + +      +            W+        E +LE  Q L Y 
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 147 LEPSDQLGDDNPA--------------------KHFDTLLYL----------AFQHPFCE 176
           ++P+     D+ +                     + + LL L          AF    C+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CK 267

Query: 177 -----RNKA----------RHVRAGHSRLCFLGQFVLELAFCEFF---LQRYPRE----S 214
                R K            H+   H  +      V  L   ++     Q  PRE    +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTN 326

Query: 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274
           P     R   +I            S++      D +      +           L   I 
Sbjct: 327 P-----RRLSIIA----------ESIR------DGLATWDNWK-----HVNCDKLTTIIE 360

Query: 275 LCFGF--PEVYRVLFEVFGMDPEDKECQPKLRRQL-EDVDYVSVEFEGNKLTWQDVAAYK 331
                  P  YR +F+   + P        L   +  DV    V    NKL    +   +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 332 PPEDALFAQPRLFRACVP----PGMHRFRGNLWDFDSRPQVMQTLGYPLVVQDRIPEITE 387
           P E  +          V       +HR                     +V    IP+  +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHR--------------------SIVDHYNIPKTFD 460

Query: 388 ARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLM---KHLDAPG 444
           + ++           +  +Y + H          +G  ++++   ER+ +     LD   
Sbjct: 461 SDDLIP--------PYLDQYFYSH----------IGHHLKNIEHPERMTLFRMVFLDF-- 500

Query: 445 HWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRL--------------- 489
            +L++K R           +    L +   Y   + D      RL               
Sbjct: 501 RFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 490 -RNPSTTAVQQAL 501
             +  T  ++ AL
Sbjct: 560 ICSKYTDLLRIAL 572
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 100.0
3o2r_A170 Ribonuclease III; structural genomics, center for 100.0
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 100.0
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 100.0
3o2r_A170 Ribonuclease III; structural genomics, center for 100.0
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 100.0
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 100.0
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 100.0
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 100.0
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 99.98
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 99.97
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.97
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 99.97
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 99.97
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 99.97
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.97
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.96
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.93
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.93
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.89
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.83
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.75
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
Probab=100.00  E-value=2.4e-57  Score=511.39  Aligned_cols=316  Identities=18%  Similarity=0.174  Sum_probs=228.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhh
Q 009571          185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS  264 (532)
Q Consensus       185 ~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLAD  264 (532)
                      .||||||||||+||+++|+++||.+||+.+||.||.+|+++|||++|+.+|+++||++||+.++++.     .+++++||
T Consensus       332 ~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~ilaD  406 (756)
T 2qvw_A          332 DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKTWAD  406 (756)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----CcccHHHh
Confidence            4899999999999999999999999999999999999999999999999999999999999988653     45899999


Q ss_pred             HHHHHHHHHHhh-cChHHHHHHHHHHhCCCCCccc----c-ch-h--hhhhcc--cc--------cc-----cccccc--
Q 009571          265 VFWALFGAIYLC-FGFPEVYRVLFEVFGMDPEDKE----C-QP-K--LRRQLE--DV--------DY-----VSVEFE--  318 (532)
Q Consensus       265 vfEALIGAIylD-~G~~~a~~~i~~~~g~d~~~~~----~-~p-k--l~~~le--di--------d~-----vs~ef~--  318 (532)
                      +|||+|||||+| +|++.|++|+.+++...++...    | .| +  +...+.  .+        +.     .++...  
T Consensus       407 ~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~  486 (756)
T 2qvw_A          407 MYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSR  486 (756)
T ss_dssp             HHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSH
T ss_pred             HHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccchhhH
Confidence            999999999999 9999999999998853322111    0 12 1  100000  00        00     000000  


Q ss_pred             ----------C----cccchhhcccC-------CCc------hhhhhhcc-----------------hhhhccCCCCC--
Q 009571          319 ----------G----NKLTWQDVAAY-------KPP------EDALFAQP-----------------RLFRACVPPGM--  352 (532)
Q Consensus       319 ----------g----~~l~w~~i~~~-------~~p------~dal~~~p-----------------~l~~~c~p~~~--  352 (532)
                                +    ....|.++..+       ..|      .|++.+..                 +.|..|.+..+  
T Consensus       487 aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~  566 (756)
T 2qvw_A          487 VSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVL  566 (756)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECC
T ss_pred             HHHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceeccccccccccccccccccccCCchh
Confidence                      0    01134332211       011      12211110                 12334433100  


Q ss_pred             ---c-c-----c--------cCCcccCCChHHHHHHhCCCCccCCCchhhh-------hhhhhhh------hhhhhhhhc
Q 009571          353 ---H-R-----F--------RGNLWDFDSRPQVMQTLGYPLVVQDRIPEIT-------EARNIEL------GLGLQLCFL  402 (532)
Q Consensus       353 ---~-~-----f--------~~~~~~~~~~~~l~~~Lgy~f~~~~~~~~i~-------~~~n~~~------~~lL~~Alt  402 (532)
                         + .     .        ..++|. ..+..+|++|||+|+++  +..+.       -.+++.+      ..||.+|||
T Consensus       567 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~lE~~lgY~F~~~--~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlT  643 (756)
T 2qvw_A          567 YIYHRSVQCPVLYGSLTETPTGPVAS-KVLALYEKILAYESSGG--SKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALT  643 (756)
T ss_dssp             TTTTSSSCCTTTTCCCC---CTTTHH-HHHHHHHHHHSSCCCCS--SHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHS
T ss_pred             hhhcccccCccccccccccccchhhh-hHHHHHHHHhCCCccCc--chhhhHhhhhhhhccccccccccccHHHHHHHhc
Confidence               0 0     0        112222 12678999999999852  11110       0000100      248999999


Q ss_pred             CCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcC--ChhhHhcchhhh
Q 009571          403 HPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKN--LHRYMIYSEQVQ  480 (532)
Q Consensus       403 H~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~--L~~~l~~g~~~~  480 (532)
                      |+|          ||||||||||||+++|++|||++||+.+||.||++|+++||+++||.+|+++|  |++||++|+|+.
T Consensus       644 H~S----------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~  713 (756)
T 2qvw_A          644 PHV----------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI  713 (756)
T ss_dssp             TGG----------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC
T ss_pred             Ccc----------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhh
Confidence            999          79999999999999999999999999999999999999999999999999999  999999998874


Q ss_pred             hhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcccc
Q 009571          481 DAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFE  525 (532)
Q Consensus       481 ~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~~~  525 (532)
                      .       .++++++|+|||+|||||+|+|++.|++||.++|.+.
T Consensus       714 ~-------~~~kilaD~~EAliGAiylD~G~~~a~~~v~~~~~~~  751 (756)
T 2qvw_A          714 Q-------PDSKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQ  751 (756)
T ss_dssp             C-------TTCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTGGG
T ss_pred             c-------CCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2       5688999999999999999999999999999999653
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 532
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 3e-09
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 6e-04
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 7e-05
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 0.001
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 165 LLYLAFQHP---FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
           LL+ A  H      +    R     + +L FLG  VLEL  CE   ++YP      +   
Sbjct: 27  LLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARV 86

Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
                    L    +  +L   +F     ++   ++R+  +   F AL  AIYL  G+ +
Sbjct: 87  KSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEK 146

Query: 282 VYRVLFEVF 290
           +  +  + F
Sbjct: 147 IKELFEQEF 155
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 100.0
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 100.0
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 100.0
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 99.98
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.91
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.83
d1ztda1124 Hypothetical protein PF0609 {Pyrococcus furiosus [ 80.66
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure